BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9708
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CU7|A Chain A, Human Complement Component 5
 pdb|3CU7|B Chain B, Human Complement Component 5
 pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
            Beta-Grasp Domain Of Ssl7
 pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
          Length = 1676

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 17   ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELR 76
            ++KG L  +  T+     RP  V L   LI S GF +G    +   ++  H T+T  E+ 
Sbjct: 1318 KHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVV--HKTSTSEEVC 1375

Query: 77   PEMVSLATQLIESAGFKA 94
               + + TQ IE++ ++ 
Sbjct: 1376 SFYLKIDTQDIEASHYRG 1393


>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
          Length = 1676

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 17   ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELR 76
            ++KG L  +  T+     RP  V L   LI S GF +G    +   ++  H T+T  E+ 
Sbjct: 1318 KHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVV--HKTSTSEEVC 1375

Query: 77   PEMVSLATQLIESAGFKA 94
               + + TQ IE++ ++ 
Sbjct: 1376 SFYLKIDTQDIEASHYRG 1393


>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
          Length = 1580

 Score = 27.3 bits (59), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 17   ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELR 76
            ++KG L  +  T+     RP  V L   LI S GF +G    +   ++  H T+T  E+ 
Sbjct: 1222 KHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVV--HKTSTSEEVC 1279

Query: 77   PEMVSLATQLIESAGFKA 94
               + + TQ IE++ ++ 
Sbjct: 1280 SFYLKIDTQDIEASHYRG 1297


>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
           C2- 2-1)
 pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
           C2- 2-1)
 pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
           C2- 2-1)
 pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
           C2- 2-1)
 pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
           C2- 2-1)
 pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
           C2- 2-1)
          Length = 1024

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 18  NKGPLLTFHYTNTP--VELRPEM---VSLATQLIESAGFKAGAWVEN 59
           N   + T HY   P  ++L  EM   V L   L E+ GF+AG WVEN
Sbjct: 362 NVNAIRTSHYPPHPRLLDLADEMGFWVILECDL-ETHGFEAGGWVEN 407


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,122,070
Number of Sequences: 62578
Number of extensions: 106349
Number of successful extensions: 222
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 9
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)