Query psy9708
Match_columns 99
No_of_seqs 107 out of 135
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:36:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyg_A NTD biosynthesis operon 92.2 0.65 2.2E-05 32.8 7.5 81 14-94 90-185 (289)
2 1u02_A Trehalose-6-phosphate p 84.2 6 0.00021 27.4 7.8 79 13-93 60-144 (239)
3 3rqt_A Putative uncharacterize 65.3 11 0.00038 29.0 5.3 50 40-95 311-360 (486)
4 1iuh_A 2'-5' RNA ligase; riken 64.0 19 0.00066 24.3 5.9 52 38-89 13-66 (198)
5 3lvu_A ABC transporter, peripl 63.0 13 0.00043 25.8 4.9 56 39-95 101-160 (258)
6 3iuu_A MLRC-like, putative met 59.2 32 0.0011 27.6 7.1 87 4-91 90-224 (495)
7 2kl8_A OR15; structural genomi 58.7 28 0.00094 21.0 6.9 61 35-95 12-73 (85)
8 3o6p_A Peptide ABC transporter 58.5 5.9 0.0002 27.0 2.4 50 40-95 81-132 (229)
9 3zs6_A Periplasmic oligopeptid 57.6 23 0.00077 27.3 5.8 50 39-95 331-381 (506)
10 2vfk_A AKAP18 delta; APO, hydr 55.9 18 0.00062 24.2 4.5 57 33-89 15-72 (205)
11 3o9p_A Periplasmic murein pept 55.8 25 0.00087 27.1 5.9 50 39-95 343-393 (519)
12 3pam_A Transmembrane protein; 49.1 29 0.001 23.8 4.8 54 39-95 102-159 (259)
13 1jet_A OPPA, oligo-peptide bin 48.4 39 0.0013 25.9 5.8 48 41-95 343-391 (517)
14 3rxz_A Polysaccharide deacetyl 48.0 42 0.0014 24.1 5.7 68 11-94 99-166 (300)
15 3t66_A Nickel ABC transporter 43.9 45 0.0015 25.6 5.6 55 40-95 305-362 (496)
16 2o7i_A Oligopeptide ABC transp 42.6 49 0.0017 26.1 5.7 55 40-95 345-405 (592)
17 3drf_A Oligopeptide-binding pr 40.5 77 0.0026 24.9 6.5 54 40-95 382-441 (590)
18 1vr5_A Oligopeptide ABC transp 39.8 45 0.0015 25.9 5.0 55 40-95 339-399 (547)
19 2lxi_A RNA-binding protein 10; 39.2 42 0.0014 19.6 3.8 31 64-97 2-32 (91)
20 4hti_A Receptor-type tyrosine- 38.8 59 0.002 20.7 4.6 52 1-52 29-88 (99)
21 1jx6_A LUXP protein; protein-l 36.7 87 0.003 21.9 5.8 57 38-94 18-77 (342)
22 1vgj_A Hypothetical protein PH 36.2 59 0.002 21.1 4.6 51 38-88 13-66 (184)
23 3ry3_A Putative solute-binding 36.1 51 0.0018 25.5 4.8 55 40-95 334-392 (528)
24 1zu0_A Chitin oligosaccharide 33.3 86 0.003 24.1 5.7 55 40-95 324-384 (529)
25 3r27_A HnRNP L, heterogeneous 32.9 35 0.0012 21.2 2.8 31 59-92 17-47 (100)
26 2hsg_A Glucose-resistance amyl 32.7 1.2E+02 0.004 21.2 5.9 62 30-95 29-94 (332)
27 2cc0_A Acetyl-xylan esterase; 32.5 43 0.0015 22.4 3.4 41 10-50 53-93 (195)
28 1wex_A Hypothetical protein (r 31.4 34 0.0012 20.9 2.5 31 58-91 10-40 (104)
29 3cl6_A PUUE allantoinase; URIC 31.2 46 0.0016 24.1 3.6 43 9-51 116-158 (308)
30 3v6g_A Probable transcriptiona 30.6 35 0.0012 22.6 2.7 24 72-95 12-35 (208)
31 3jsj_A Putative TETR-family tr 30.3 42 0.0014 21.2 2.9 24 72-96 7-30 (190)
32 3qbu_A Putative uncharacterize 29.3 69 0.0024 23.4 4.3 42 9-50 109-150 (326)
33 3kjx_A Transcriptional regulat 29.1 1.3E+02 0.0043 21.2 5.6 62 30-95 37-102 (344)
34 2grv_A LPQW; substrate-binding 28.9 1.1E+02 0.0038 24.3 5.7 55 40-95 368-442 (621)
35 1r8j_A KAIA; circadian clock p 28.9 22 0.00076 26.8 1.5 43 39-85 159-201 (289)
36 2noo_A NIKA, nickel-binding pe 28.8 91 0.0031 23.7 5.1 55 40-95 313-372 (502)
37 4hhu_A OR280; engineered prote 28.6 1.3E+02 0.0046 20.1 6.4 61 35-95 13-74 (170)
38 4hhu_A OR280; engineered prote 28.6 1.3E+02 0.0046 20.1 6.5 31 65-95 125-155 (170)
39 1sjq_A Polypyrimidine tract-bi 28.5 66 0.0023 20.0 3.6 30 59-91 12-41 (105)
40 3on2_A Probable transcriptiona 28.5 51 0.0017 20.6 3.1 24 72-95 10-33 (199)
41 2d5w_A Peptide ABC transporter 28.5 1.1E+02 0.0038 23.9 5.6 55 40-95 375-437 (603)
42 2gfn_A HTH-type transcriptiona 28.4 40 0.0014 22.0 2.6 24 73-96 8-31 (209)
43 1uqw_A Putative binding protei 27.0 1.5E+02 0.005 22.7 6.0 48 40-95 329-376 (509)
44 3tpa_A Heme-binding protein A; 26.8 1.4E+02 0.0048 22.9 5.9 49 40-95 336-387 (521)
45 4hlb_A Uncharacterized protein 26.8 88 0.003 19.7 3.9 39 16-54 48-89 (115)
46 1ny1_A Probable polysaccharide 26.5 70 0.0024 22.3 3.8 41 10-50 92-132 (240)
47 3on4_A Transcriptional regulat 26.3 59 0.002 20.2 3.1 24 72-95 8-31 (191)
48 1qpz_A PURA, protein (purine n 26.2 1.4E+02 0.0047 21.0 5.4 62 30-95 27-92 (340)
49 3dew_A Transcriptional regulat 26.1 52 0.0018 20.6 2.8 24 72-95 6-29 (206)
50 1qm9_A Polypyrimidine tract-bi 25.8 62 0.0021 21.0 3.2 34 61-97 118-151 (198)
51 3h87_C Putative uncharacterize 25.5 23 0.00079 21.4 0.9 20 65-84 3-22 (73)
52 2y8u_A Chitin deacetylase; hyd 25.1 73 0.0025 22.1 3.6 40 11-50 82-121 (230)
53 3ccy_A Putative TETR-family tr 25.0 56 0.0019 20.9 2.8 24 73-96 13-36 (203)
54 3kkd_A Transcriptional regulat 25.0 54 0.0018 21.6 2.8 24 72-95 33-56 (237)
55 2llz_A Uncharacterized protein 24.6 77 0.0026 20.2 3.3 34 58-95 8-41 (100)
56 3s6o_A Polysaccharide deacetyl 24.4 74 0.0025 23.3 3.7 40 11-50 123-162 (321)
57 2c71_A Glycoside hydrolase, fa 24.2 79 0.0027 21.6 3.6 41 10-50 55-95 (216)
58 1jh6_A Cyclic phosphodiesteras 24.0 1.2E+02 0.004 20.2 4.5 51 31-89 16-66 (189)
59 2f07_A YVDT; helix-turn-helix, 24.0 63 0.0022 20.7 3.0 24 72-95 8-31 (197)
60 1zk8_A Transcriptional regulat 23.7 77 0.0026 19.7 3.3 24 72-95 6-29 (183)
61 2nx4_A Transcriptional regulat 23.7 46 0.0016 21.3 2.2 23 74-96 10-32 (194)
62 2q24_A Putative TETR family tr 23.7 59 0.002 20.6 2.7 20 74-93 15-34 (194)
63 3cdl_A Transcriptional regulat 23.4 41 0.0014 21.7 1.9 23 73-95 8-30 (203)
64 2i10_A Putative TETR transcrip 23.4 55 0.0019 21.2 2.6 23 74-96 11-33 (202)
65 2j13_A Polysaccharide deacetyl 23.2 90 0.0031 21.9 3.8 43 9-51 103-145 (247)
66 3m8u_A Heme-binding protein A; 23.0 1.6E+02 0.0055 22.5 5.5 49 40-95 331-382 (522)
67 1pcf_A P15, transcriptional co 22.8 6.2 0.00021 23.4 -2.1 23 4-26 23-47 (66)
68 3isz_A Succinyl-diaminopimelat 22.6 91 0.0031 22.3 3.8 32 63-94 252-283 (377)
69 3col_A Putative transcription 22.4 68 0.0023 19.9 2.8 24 72-95 8-31 (196)
70 2d6y_A Putative TETR family re 22.0 67 0.0023 20.7 2.8 24 72-95 6-29 (202)
71 2lse_A Four helix bundle prote 27.6 19 0.00065 22.4 0.0 62 30-91 23-85 (101)
72 3nrg_A TETR family transcripti 21.9 44 0.0015 21.4 1.8 24 72-95 11-34 (217)
73 3he0_A Transcriptional regulat 21.9 73 0.0025 19.9 2.9 23 73-95 10-32 (196)
74 2qtq_A Transcriptional regulat 21.9 74 0.0025 20.1 2.9 24 72-95 14-37 (213)
75 2h1v_A Ferrochelatase; rossman 21.9 2.3E+02 0.008 20.5 6.7 53 33-93 195-249 (310)
76 2qwt_A Transcriptional regulat 21.8 63 0.0021 20.7 2.6 20 74-93 13-32 (196)
77 2w53_A Repressor, SMet; antibi 21.8 69 0.0024 20.7 2.8 24 73-96 10-33 (219)
78 3rd3_A Probable transcriptiona 21.5 69 0.0023 20.0 2.7 24 72-95 8-31 (197)
79 2iw0_A Chitin deacetylase; hyd 21.4 75 0.0026 22.4 3.1 42 9-50 94-135 (254)
80 3f0c_A TETR-molecule A, transc 21.3 71 0.0024 20.3 2.8 24 72-95 9-32 (216)
81 2dg8_A Putative TETR-family tr 21.1 83 0.0028 19.9 3.1 23 73-95 8-30 (193)
82 2wui_A MEXZ, transcriptional r 21.1 57 0.0019 21.1 2.3 23 73-95 10-32 (210)
83 3jvd_A Transcriptional regulat 20.7 1.1E+02 0.0038 21.5 4.0 63 30-96 33-99 (333)
84 2ad9_A Polypyrimidine tract-bi 20.7 67 0.0023 20.4 2.5 30 59-91 27-56 (119)
85 2np5_A Transcriptional regulat 20.6 75 0.0026 20.4 2.8 22 74-95 9-30 (203)
86 1ui5_A A-factor receptor homol 20.5 79 0.0027 20.6 2.9 23 73-95 8-30 (215)
87 1j3m_A The conserved hypotheti 20.5 48 0.0016 20.9 1.8 27 68-94 4-30 (129)
88 3him_A Probable transcriptiona 20.3 65 0.0022 20.3 2.4 23 72-94 14-36 (211)
89 2qas_A SSPB, hypothetical prot 20.0 81 0.0028 21.7 2.9 64 4-74 30-102 (157)
No 1
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}
Probab=92.21 E-value=0.65 Score=32.84 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=53.6
Q ss_pred eEEecccceeeeec-cC--Ccc----------chhHHHHHHHHHHHHHhCCCCce--EEeecCCeeeEeecCCCCCchHH
Q psy9708 14 AWVENKGPLLTFHY-TN--TPV----------ELRPEMVSLATQLIESAGFKAGA--WVENKGPLLTFHYTNTPVELRPE 78 (99)
Q Consensus 14 ~~vgnhG~el~~h~-~~--~p~----------e~~~~l~~~a~~L~e~~~~~~G~--~VE~K~~~~a~HyR~v~~~~~~~ 78 (99)
.+++++|.++.+-. +. +.. -..+.+.++...|.+.++...+. ..|.+++.+++||+...+.....
T Consensus 90 ~~i~~~g~~i~~~~~ng~~~~~~~~~~~~~~~~~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~ 169 (289)
T 3gyg_A 90 FIASDLGTEITYFSEHNFGQQDNKWNSRINEGFSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKK 169 (289)
T ss_dssp EEEETTTTEEEECCSSSTTEECHHHHHHHHTTCCHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHH
T ss_pred eEeecCCceEEEEcCCCcEeecCchhhhhcccCCHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchH
Confidence 68888888876621 11 110 12345556666777765654333 56888999999999976544455
Q ss_pred HHHHHHHHHHHhCccc
Q psy9708 79 MVSLATQLIESAGFKA 94 (99)
Q Consensus 79 v~~~~~~~~~~~G~~~ 94 (99)
.+..+.++.+.+|++.
T Consensus 170 ~~~~~~~~l~~~g~~~ 185 (289)
T 3gyg_A 170 NLLAIEKICEEYGVSV 185 (289)
T ss_dssp HHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHcCCCE
Confidence 6677888899999864
No 2
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=84.19 E-value=6 Score=27.38 Aligned_cols=79 Identities=8% Similarity=-0.005 Sum_probs=41.2
Q ss_pred CeEEecccceeeeeccCCcc----chhHHHH-HHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHH
Q psy9708 13 GAWVENKGPLLTFHYTNTPV----ELRPEMV-SLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLI 87 (99)
Q Consensus 13 g~~vgnhG~el~~h~~~~p~----e~~~~l~-~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~ 87 (99)
..+++++|..+... ...-. -+...+. +.++++.+.+.-.++.++|.|....++||+.+++.. +++.+...+.+
T Consensus 60 ~~~I~~nGa~i~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 137 (239)
T 1u02_A 60 INMICYHGACSKIN-GQIVYNNGSDRFLGVFDRIYEDTRSWVSDFPGLRIYRKNLAVLYHLGLMGADM-KPKLRSRIEEI 137 (239)
T ss_dssp CEEEEGGGTEEEET-TEEEECTTGGGGHHHHHHHHHHHTTHHHHSTTCEEEEETTEEEEECTTSCSTT-HHHHHHHHHHH
T ss_pred hheEEECCEEEeeC-CeeeecccccccchhhHHHHHHHHHHHhhCCCcEEEecCCEEEEEcCCCChhH-HHHHHHHHHHH
Confidence 36899999988652 11100 0111111 223333322211246799999999999999876532 33443333323
Q ss_pred HH-hCcc
Q psy9708 88 ES-AGFK 93 (99)
Q Consensus 88 ~~-~G~~ 93 (99)
.+ .++.
T Consensus 138 ~~~~~~~ 144 (239)
T 1u02_A 138 ARIFGVE 144 (239)
T ss_dssp HHHHTCE
T ss_pred hccCCcE
Confidence 22 4554
No 3
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=65.33 E-value=11 Score=29.00 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|...| ||+.+++-+.. .......+....++-.++.|++++
T Consensus 311 ~kAk~LL~eAG~~~g-----~~l~l~l~~~~-~~~~~~~~a~~iq~~l~~iGI~v~ 360 (486)
T 3rqt_A 311 EQAKMLLAKDGYTKE-----HPLKIKLITYD-GRPELSKIAQVLQSDAKKANIEID 360 (486)
T ss_dssp HHHHHHHHTTTCCSS-----SCEEEEEEECS-SSTHHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHCCCCCC-----CceEEEEEecC-CCccHHHHHHHHHHHHHhcCCEEE
Confidence 667889999998777 78888888754 233444566666666777898764
No 4
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=64.01 E-value=19 Score=24.28 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCC-CceEEeecCCeeeEeec-CCCCCchHHHHHHHHHHHHH
Q psy9708 38 MVSLATQLIESAGFK-AGAWVENKGPLLTFHYT-NTPVELRPEMVSLATQLIES 89 (99)
Q Consensus 38 l~~~a~~L~e~~~~~-~G~~VE~K~~~~a~HyR-~v~~~~~~~v~~~~~~~~~~ 89 (99)
+.+.+.++++++... .+-|++.-.+-+|+.|= +++++..+++.+.+.+++..
T Consensus 13 ~~~~l~~~~~~l~~~~~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~~~ 66 (198)
T 1iuh_A 13 VRAALVEAQTKVRPFRGWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLARL 66 (198)
T ss_dssp HHHHHHHHHGGGTTCTTEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHhcc
Confidence 344445555555322 24599999999999874 67888999999998888754
No 5
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=63.00 E-value=13 Score=25.76 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCc--eEEe--ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 39 VSLATQLIESAGFKAG--AWVE--NKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 39 ~~~a~~L~e~~~~~~G--~~VE--~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
.+.|++|.++.|...+ -+.+ .||+++++.+..- ......+....++-.++.|+++.
T Consensus 101 ~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~-~~~~~~~a~~iq~~l~~iGi~v~ 160 (258)
T 3lvu_A 101 LRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQG-DSDMQTVLEIYTRALERLGIAAQ 160 (258)
T ss_dssp HHHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETT-CHHHHHHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCC-ChhHHHHHHHHHHHHHHcCCeeE
Confidence 3677889999886532 2333 3568899988762 33445566666777777998874
No 6
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=59.18 E-value=32 Score=27.57 Aligned_cols=87 Identities=15% Similarity=-0.015 Sum_probs=63.5
Q ss_pred HHHhhhCCCCeEEecccceeee---------------------------------------------eccCCcc-chhHH
Q psy9708 4 WIERHYCKQGAWVENKGPLLTF---------------------------------------------HYTNTPV-ELRPE 37 (99)
Q Consensus 4 dl~~~v~~~g~~vgnhG~el~~---------------------------------------------h~~~~p~-e~~~~ 37 (99)
++++...+||.|...||...+- -||.-|. +..+.
T Consensus 90 ~l~~a~p~Dgv~L~LHGAmv~eg~~D~EGdlL~rvR~~vGp~vpI~~slDlH~Nvt~~mv~~aD~l~~yrtyPH~D~~et 169 (495)
T 3iuu_A 90 QAARMQDFDAICLDLHGATLAEHTLDTEGYLLSRLREVVGNDIMISLALDLHAYLTPQMVEQATIITSFRTTPHADIEET 169 (495)
T ss_dssp HHHHHSCCSEEEEEECSCCCBSSCSSHHHHHHHHHHHHHTTTSEEEEEECTTCCCCHHHHHHCSEEEECCCSSCCCHHHH
T ss_pred HHHhcCCCCEEEEeccCcEeecCCCCchHHHHHHHHHHhCCCCeEEEEeCCCCCccHHHHhhCCEEEEcCCCCccCHHHH
Confidence 6666677888899999887543 2666674 77777
Q ss_pred HHHHHHHHHHHh--CCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhC
Q psy9708 38 MVSLATQLIESA--GFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 91 (99)
Q Consensus 38 l~~~a~~L~e~~--~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G 91 (99)
-.++++-|.+.+ +.++-.+.-.-|..+... ..+..+=...+.+.++++=+.-|
T Consensus 170 g~raa~lL~~~l~~~~rp~~a~~~~P~l~~~~-~~T~~eP~~~l~~~~~~~E~~~g 224 (495)
T 3iuu_A 170 GVRAMTLLDSLSNETRPPRAIYSLIPFLTRGN-DETWSGPLAEIGAAADRWRARSD 224 (495)
T ss_dssp HHHHHHHHHHTTTCSSCCEEEEEEECBCCBSC-CCSSSSHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHhCCCCceEEEecCCEEcccC-CCCchhHHHHHHHHHHHHhccCC
Confidence 778888887777 345666778888888877 67777777788888888644335
No 7
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=58.65 E-value=28 Score=21.05 Aligned_cols=61 Identities=18% Similarity=0.206 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHhC-CCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 35 RPEMVSLATQLIESAG-FKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 35 ~~~l~~~a~~L~e~~~-~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
......++++++.+.. |.-.+..---+--+-+-...||...+.++...+.+++.++++.++
T Consensus 12 leafekalkemirqarkfagtvtytldgndleiritgvpeqvrkelakeaerlakefnitvt 73 (85)
T 2kl8_A 12 LEAFEKALKEMIRQARKFAGTVTYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFNITVT 73 (85)
T ss_dssp HHHHHHHHHHHHHHHTTTTCEEEEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhhcceEEEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcCeEEE
Confidence 3445566666666653 333334444555566677889999999999999999999998775
No 8
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=58.48 E-value=5.9 Score=27.00 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHH-h-Ccccc
Q psy9708 40 SLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIES-A-GFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~-~-G~~~~ 95 (99)
+.|++|.++.|...|. |++.+++.|.. ......+....++-.++ . |++++
T Consensus 81 ~kAk~LL~eaG~~~g~----~~l~l~l~~~~--~~~~~~~a~~i~~~l~~~i~GI~v~ 132 (229)
T 3o6p_A 81 KKAKEYWEKAKKELGI----STLTMDILSSD--ADSSKKTVEFVQGSIQDALDGVKVT 132 (229)
T ss_dssp HHHHHHHHHHHHHHTC----SCEEEEEEEEC--SHHHHHHHHHHHHHHHHHSTTEEEE
T ss_pred HHHHHHHHHcCcccCC----CceEEEEEeCC--ChHHHHHHHHHHHHHHHhCCCcEEE
Confidence 5667888877655553 67889998854 23345566666776777 8 98774
No 9
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=57.60 E-value=23 Score=27.26 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHH-hCcccc
Q psy9708 39 VSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIES-AGFKAG 95 (99)
Q Consensus 39 ~~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~-~G~~~~ 95 (99)
.+.|++|.++.|..+| ||+.+++-|..-+ ....+....++-.++ .|+++.
T Consensus 331 ~~kAk~LL~eAG~~~G-----~~~~l~l~~~~~~--~~~~~a~~i~~~l~~~iGI~v~ 381 (506)
T 3zs6_A 331 VDYAKNLLKQAGHGDA-----NPLTFTLTYNTND--LHKKVALFAASEWRTKLGVTAK 381 (506)
T ss_dssp HHHHHHHHHHTTCSTT-----SCCEEEEEEESCH--HHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHcCCCCC-----CCceEEEEEcCCc--hHHHHHHHHHHHHHHhcCCEEE
Confidence 4778999999998765 7889999887632 233455556666665 898864
No 10
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=55.88 E-value=18 Score=24.23 Aligned_cols=57 Identities=9% Similarity=-0.042 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHHHHhCCCCceEEeecCCeeeEeec-CCCCCchHHHHHHHHHHHHH
Q psy9708 33 ELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYT-NTPVELRPEMVSLATQLIES 89 (99)
Q Consensus 33 e~~~~l~~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR-~v~~~~~~~v~~~~~~~~~~ 89 (99)
+....+.+..+.|.++.....+.|++.-.+-+|+.+= +++++..+++.+...++...
T Consensus 15 ~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~ 72 (205)
T 2vfk_A 15 KITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPF 72 (205)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcchHHHhCCcCccEEEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 5677776666666654211235699999999999885 57888888888888877654
No 11
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=55.81 E-value=25 Score=27.07 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHH-hCcccc
Q psy9708 39 VSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIES-AGFKAG 95 (99)
Q Consensus 39 ~~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~-~G~~~~ 95 (99)
.+.|++|.++.|...| ||+.+++-|..-+ ....+....++-.++ .|+++.
T Consensus 343 ~~kAk~LL~eaG~~~G-----~~l~l~l~~~~~~--~~~~~a~~i~~~l~~~iGI~v~ 393 (519)
T 3o9p_A 343 NAQAKTLLSAAGYGPQ-----KPLKLTLLYNTSE--NHQKIAIAVASMWKKNLGVDVK 393 (519)
T ss_dssp HHHHHHHHHHHTCBTT-----BCCEEEEEEESCH--HHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHcCCCCC-----CCceEEEEecCCc--hhHHHHHHHHHHHHHhcCcEEE
Confidence 3778999999997765 7888999887632 234455556666665 898764
No 12
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=49.14 E-value=29 Score=23.84 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCce--EEe--ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 39 VSLATQLIESAGFKAGA--WVE--NKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 39 ~~~a~~L~e~~~~~~G~--~VE--~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
.+.|++|.++.|...|. +.+ .||+++++-+.+ .....+....++-.++.|+++.
T Consensus 102 ~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~---~~~~~~a~~iq~~l~~iGI~v~ 159 (259)
T 3pam_A 102 AQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQS---LEEEKVALAFQSNLSRLGIHAE 159 (259)
T ss_dssp HHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESS---HHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCC---chHHHHHHHHHHHHHHcCCEEE
Confidence 36778999998865322 333 356788887753 3344556666776777898774
No 13
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=48.37 E-value=39 Score=25.92 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHH-hCcccc
Q psy9708 41 LATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIES-AGFKAG 95 (99)
Q Consensus 41 ~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~-~G~~~~ 95 (99)
.|++|.++.|...| |++.+++-|..- .....+....++-.++ .|+++.
T Consensus 343 kAk~LL~eAG~~~G-----~~~~l~l~~~~~--~~~~~~a~~iq~~l~~~iGI~v~ 391 (517)
T 1jet_A 343 EAKKLLAEAGFTAD-----KPLTFDLLYNTS--DLHKKLAIAVASIWKKNLGVNVN 391 (517)
T ss_dssp HHHHHHHHTTCCSS-----SCCEEEEEEESC--HHHHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHhCCCCCC-----CCeEEEEEecCC--chHHHHHHHHHHHHHHhcCCEEE
Confidence 78999999987765 677888888652 2334555566666665 898864
No 14
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=47.97 E-value=42 Score=24.09 Aligned_cols=68 Identities=16% Similarity=0.047 Sum_probs=38.8
Q ss_pred CCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHh
Q psy9708 11 KQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESA 90 (99)
Q Consensus 11 ~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~ 90 (99)
-.|+=+||||..-.....-.+.+.+..|.+..+.|.+..|. +|......|=...+ .+.+++.+.
T Consensus 99 ~~GhEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~--------~p~~fr~P~g~~~~--------~~~~~l~e~ 162 (300)
T 3rxz_A 99 RAGHEIAHHGYLHESLVGADEDTERKILTRGIEALEEVAGV--------HPVGYRAPMWEMNW--------HTPKLLAEF 162 (300)
T ss_dssp HTTCEEEECCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHSC--------CCCEECCGGGCCCT--------THHHHHHHT
T ss_pred HcCCEEEecCCCCcccccCCHHHHHHHHHHHHHHHHHHhCC--------CCcEEECCCCCCCH--------HHHHHHHHc
Confidence 35789999997643332223456777777776666665652 23333333333332 345667778
Q ss_pred Cccc
Q psy9708 91 GFKA 94 (99)
Q Consensus 91 G~~~ 94 (99)
||+.
T Consensus 163 G~~y 166 (300)
T 3rxz_A 163 GFLY 166 (300)
T ss_dssp TCSE
T ss_pred CCEE
Confidence 8874
No 15
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=43.90 E-value=45 Score=25.56 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCC--ceEE-eecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFKA--GAWV-ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~~--G~~V-E~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|... |.+. ..||+.+++.+..- ......+....++-.++.|++++
T Consensus 305 ~kAk~LL~eaG~~~~dG~~~~dG~~l~l~l~~~~~-~~~~~~~a~~i~~~l~~iGI~v~ 362 (496)
T 3t66_A 305 DIAIQYLEEAGYTLENGQMQKDGEPLHFTVLTYGS-RAELPLIAQVFQSNAKQIGIEVE 362 (496)
T ss_dssp HHHHHHHHHHTCEECC-CEEETTEECEEEEEECSS-STTHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCCCCCcCccCCcEEEEEEEecCC-CccHHHHHHHHHHHHHhcCCEEE
Confidence 56788888888664 4432 23677888888652 23344555666666677898774
No 16
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A*
Probab=42.64 E-value=49 Score=26.05 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCC---CceEEe--ecCCe-eeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFK---AGAWVE--NKGPL-LTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~---~G~~VE--~K~~~-~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|.. +|.+.- .|++. +++-+..- ......+....++-.++.|+++.
T Consensus 345 ~kAk~LL~eAG~~~~~dG~~~~~~G~~l~~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~ 405 (592)
T 2o7i_A 345 DMANKILDEAGYKKGPDGVRVGPDGTKLGPYTISVPYG-WTDWMMMCEMIAKNLRSIGIDVK 405 (592)
T ss_dssp HHHHHHHHHTTCEECTTSCEECTTCCBCCCEEEECCTT-CHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCCCCCCCeEECCCCCEeeEEEEEeCCC-chHHHHHHHHHHHHHHHcCCeEE
Confidence 5678999999875 455542 45666 77776542 22334555666666677898874
No 17
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Probab=40.49 E-value=77 Score=24.88 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCC----CceEEee--cCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFK----AGAWVEN--KGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~----~G~~VE~--K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|.. .|.+ +. |++.+++-|..- ......+.+..++-.++.|+++.
T Consensus 382 ~kAk~LL~eAG~~~~~~dG~~-~~~G~~l~l~~~~~~~-~~~~~~~a~~i~~~l~~iGI~v~ 441 (590)
T 3drf_A 382 DKANKLLDEDGWKLNKSTGYR-EKDGKELSLVYAARVG-DANAETIAQNYIQQWKKIGVKVS 441 (590)
T ss_dssp HHHHHHHHHTTCEEETTTTEE-EETTEECEEEEECBCC-STTHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCcccCCCceE-CCCCcEEEEEEEecCC-ChHHHHHHHHHHHHHHHhCcEEE
Confidence 6678899998876 4555 32 467777776542 22344555555565667898874
No 18
>1vr5_A Oligopeptide ABC transporter, periplasmic oligope binding protein; TM1223, periplasmic oligopepti binding, structural genomics; HET: EPE; 1.73A {Thermotoga maritima} SCOP: c.94.1.1
Probab=39.84 E-value=45 Score=25.92 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCC----CceEE--eecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFK----AGAWV--ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~----~G~~V--E~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|.. +|.+. ..|++.+++-+..- ......+....++-.++.|+++.
T Consensus 339 ~kAk~LL~eAG~~~~~~dG~~~~~~G~~l~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~ 399 (547)
T 1vr5_A 339 EMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYG-WTDWMVSIQSIAEDLVKVGINVE 399 (547)
T ss_dssp HHHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEECCTT-CHHHHHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHCCCeEECCCCeEECCCCeEEEEEEEecCC-ChhHHHHHHHHHHHHHhcCceEE
Confidence 5678899999875 34443 24667888876542 22334555566666677898864
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=39.19 E-value=42 Score=19.59 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=24.0
Q ss_pred eeEeecCCCCCchHHHHHHHHHHHHHhCcccccc
Q psy9708 64 LTFHYTNTPVELRPEMVSLATQLIESAGFKAGEC 97 (99)
Q Consensus 64 ~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~~~ 97 (99)
-++..++.|.+.-++ ..+++++++|..+..|
T Consensus 2 ~~i~v~nLp~~~te~---~l~~~F~~~G~~v~~v 32 (91)
T 2lxi_A 2 NIVMLRMLPQAATED---DIRGQLQSHGVQAREV 32 (91)
T ss_dssp CEEEEETCCSSCCHH---HHHHHHHHHTCCCSBC
T ss_pred CEEEEeCCCCCCCHH---HHHHHHHHhCCEeEEE
Confidence 367889999987766 6778899999766554
No 20
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=38.83 E-value=59 Score=20.66 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=35.8
Q ss_pred ChhHHHhhhCCCC---eEEecccceeeeeccCC-----ccchhHHHHHHHHHHHHHhCCC
Q psy9708 1 MLKWIERHYCKQG---AWVENKGPLLTFHYTNT-----PVELRPEMVSLATQLIESAGFK 52 (99)
Q Consensus 1 ~l~dl~~~v~~~g---~~vgnhG~el~~h~~~~-----p~e~~~~l~~~a~~L~e~~~~~ 52 (99)
|++.|.++++++. ..+-==|-++||+.++= +.+........-..|.++.|+.
T Consensus 29 l~~~la~~l~l~~~~F~~isV~g~aVTFrV~~N~~n~taadVA~~a~~~K~~Le~~tG~~ 88 (99)
T 4hti_A 29 LVEDVARLLQVPSSAFADVEVLGPAVTFKVSANVQNVTTEDVEKATVDNKDKLEETSGLK 88 (99)
T ss_dssp HHHHHHHHTTCCGGGEEEEEEETTEEEEEECCCTTCCCHHHHHHHHHHTHHHHHHHHSSC
T ss_pred HHHHHHHHhCCchhheeeeeecCceEEEEeccCCCCCCHHHHHHHHHHHHHHHHHhhCeE
Confidence 4778899999994 45555677899976664 3455555555555777777754
No 21
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=36.74 E-value=87 Score=21.90 Aligned_cols=57 Identities=7% Similarity=0.005 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCCce--EEeecCCeeeEeecC-CCCCchHHHHHHHHHHHHHhCccc
Q psy9708 38 MVSLATQLIESAGFKAGA--WVENKGPLLTFHYTN-TPVELRPEMVSLATQLIESAGFKA 94 (99)
Q Consensus 38 l~~~a~~L~e~~~~~~G~--~VE~K~~~~a~HyR~-v~~~~~~~v~~~~~~~~~~~G~~~ 94 (99)
-.+...+..+++|++|+. .--.|..++.|=... ....--.++++.+.+.++++|+.+
T Consensus 18 tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 77 (342)
T 1jx6_A 18 QRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINY 77 (342)
T ss_dssp HHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 334445556667777775 224455677777766 566677788899999999999765
No 22
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=36.18 E-value=59 Score=21.07 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCC--CceEEeecCCeeeEeec-CCCCCchHHHHHHHHHHHH
Q psy9708 38 MVSLATQLIESAGFK--AGAWVENKGPLLTFHYT-NTPVELRPEMVSLATQLIE 88 (99)
Q Consensus 38 l~~~a~~L~e~~~~~--~G~~VE~K~~~~a~HyR-~v~~~~~~~v~~~~~~~~~ 88 (99)
+.+...++++++... .+-|+..-.+-+|+.+= +++++..+++.+..++++.
T Consensus 13 ~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~ 66 (184)
T 1vgj_A 13 VRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAE 66 (184)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcCCCcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHHc
Confidence 344445556666322 24488888889999875 6788888888888888764
No 23
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=36.06 E-value=51 Score=25.52 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCC---CceEE-eecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFK---AGAWV-ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~---~G~~V-E~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|.. +|.+. ..||+.+++.|.. .+.....+....++-.++.|++++
T Consensus 334 ~kAk~LL~eAG~~~~~dG~~~~~G~~l~l~l~~~~-~~~~~~~~a~~iq~~l~~iGI~v~ 392 (528)
T 3ry3_A 334 DKAKQILEQAGWQLNSQGTREKNGLPAKITLWYTS-GDTTRRDLAQALRSMLKPIGIDVD 392 (528)
T ss_dssp HHHHHHHHHTTCEECTTSSEEETTEECEEEEEEES-SCHHHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHcCCccCCCCEEccCCeEEEEEEEecC-CCHHHHHHHHHHHHHHHHcCCEEE
Confidence 5678899998876 34432 2366789998875 233344566666666678898764
No 24
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=33.25 E-value=86 Score=24.12 Aligned_cols=55 Identities=27% Similarity=0.267 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCC----CceEEe--ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFK----AGAWVE--NKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~----~G~~VE--~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|.. +|.+.+ .||+.+++.+..- ......+....++-.++.|++++
T Consensus 324 ~kAk~LL~eAG~~~~~~dG~~~~~~G~~l~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~ 384 (529)
T 1zu0_A 324 EGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNG-WTDFNNTVQLAVEQLQEVGIKAK 384 (529)
T ss_dssp HHHHHHHHHTTCBCCSSSSSCBCTTCCCCCEEEECCTT-CHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcCCeEECCCceEECCCCcEEEEEEEecCC-CHHHHHHHHHHHHHHHHcCCeEE
Confidence 5678898988864 232332 3567888887652 22334455556666677898864
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=32.90 E-value=35 Score=21.20 Aligned_cols=31 Identities=6% Similarity=-0.072 Sum_probs=24.7
Q ss_pred ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCc
Q psy9708 59 NKGPLLTFHYTNTPVELRPEMVSLATQLIESAGF 92 (99)
Q Consensus 59 ~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~ 92 (99)
.-+|+-+++.+|.|.+.-++ ..++++..+|-
T Consensus 17 ~~~ps~~l~V~NLp~~~te~---~L~~lF~~fG~ 47 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEA---DLVEALQEFGP 47 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHH---HHHHHHGGGSC
T ss_pred cCCCCcEEEEeCCCCCCCHH---HHHHHHhccCC
Confidence 34688899999999887665 56788999983
No 26
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=32.68 E-value=1.2e+02 Score=21.21 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=40.3
Q ss_pred CccchhHHHHHHHHHHHHHhCCCCce----EEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 30 TPVELRPEMVSLATQLIESAGFKAGA----WVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 30 ~p~e~~~~l~~~a~~L~e~~~~~~G~----~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+..+-+.++ .+..+++|++|+. .--.|..++.|=.......--..+++.+.+.++++|+.+.
T Consensus 29 vs~~tr~rV----~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 94 (332)
T 2hsg_A 29 VKPSTRKKV----LETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNII 94 (332)
T ss_dssp SCHHHHHHH----HHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHH----HHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEE
Confidence 344445554 4445666777775 1234666777777666667778889999999999998764
No 27
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=32.50 E-value=43 Score=22.42 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=24.3
Q ss_pred CCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhC
Q psy9708 10 CKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 50 (99)
Q Consensus 10 ~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~ 50 (99)
--.|.-+|||+..=.....-.+.+....|.+..+.|.+..|
T Consensus 53 ~~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G 93 (195)
T 2cc0_A 53 VDAGMWVANHSYTHPHMTQLGQAQMDSEISRTQQAIAGAGG 93 (195)
T ss_dssp HHTTCEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCCCEEEcCCCCccccccCCHHHHHHHHHHHHHHHHHHhC
Confidence 34579999999862222222345667777666556655444
No 28
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.37 E-value=34 Score=20.93 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=25.2
Q ss_pred eecCCeeeEeecCCCCCchHHHHHHHHHHHHHhC
Q psy9708 58 ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 91 (99)
Q Consensus 58 E~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G 91 (99)
...+|.-+++.++.|.+..++ ..+++++++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~---~L~~~F~~fG 40 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEA---DLVEALEKFG 40 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHH---HHHHHHTTTS
T ss_pred CcCCCCCEEEEeCCCCCCCHH---HHHHHHHhCC
Confidence 456788999999999987665 4678899998
No 29
>3cl6_A PUUE allantoinase; URIC acid, nitrogen fixation, hydrolase; 1.58A {Pseudomonas fluorescens} PDB: 3cl7_A 3cl8_A 1z7a_A
Probab=31.21 E-value=46 Score=24.08 Aligned_cols=43 Identities=16% Similarity=0.028 Sum_probs=26.1
Q ss_pred hCCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhCC
Q psy9708 9 YCKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGF 51 (99)
Q Consensus 9 v~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~~ 51 (99)
+--.|+-+||||..-.....-.+.+.+..|.+..+.|.+..|.
T Consensus 116 i~~~GheIg~Ht~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G~ 158 (308)
T 3cl6_A 116 MVAAGHEICSHGYRWIDYQYMDEAQEREHMLEAIRILTELTGE 158 (308)
T ss_dssp HHHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCCEEEeCCCCCcccccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3345789999998633322223346677777666666665553
No 30
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=30.63 E-value=35 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.4
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+++.++.|++.+.+++.+.||..+
T Consensus 12 ~~~~R~~Il~AA~~lf~~~G~~~~ 35 (208)
T 3v6g_A 12 PAGRRQAIVEAAERVIARQGLGGL 35 (208)
T ss_dssp --CHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhCcccC
Confidence 456688899999999999999754
No 31
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=30.31 E-value=42 Score=21.16 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=20.7
Q ss_pred CCCchHHHHHHHHHHHHHhCccccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAGE 96 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~~ 96 (99)
..+.++.|++.+.+++.+.||. +.
T Consensus 7 ~~~~r~~Il~aA~~lf~~~G~~-~t 30 (190)
T 3jsj_A 7 KQSPRERLLEAAAALTYRDGVG-IG 30 (190)
T ss_dssp CCCHHHHHHHHHHHHHHHHCTT-CC
T ss_pred cchHHHHHHHHHHHHHHHhCcc-cc
Confidence 4578889999999999999998 53
No 32
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=29.32 E-value=69 Score=23.38 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=26.7
Q ss_pred hCCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhC
Q psy9708 9 YCKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 50 (99)
Q Consensus 9 v~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~ 50 (99)
+--.|+=+||||..-.....-.+.+.+..|.+..+.|.+..|
T Consensus 109 i~~~GhEIg~H~~~H~~~~~~s~~~~~~ei~~~~~~l~~~~G 150 (326)
T 3qbu_A 109 IVDAGHEVGAHGYSHENPIAMSTKQEEDVLLKSVELIKDLTG 150 (326)
T ss_dssp HHTTTCEEEBCCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHcCCEEEeCCCCCcChhhCCHHHHHHHHHHHHHHHHHHHC
Confidence 344578999999764333333345777777777666666565
No 33
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=29.13 E-value=1.3e+02 Score=21.21 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=44.4
Q ss_pred CccchhHHHHHHHHHHHHHhCCCCce----EEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 30 TPVELRPEMVSLATQLIESAGFKAGA----WVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 30 ~p~e~~~~l~~~a~~L~e~~~~~~G~----~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+..+-+.++ .+..+++|++|+. .--.|..++.|=.......--.++++.+.+.++++|+.+.
T Consensus 37 vs~~tr~rV----~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 102 (344)
T 3kjx_A 37 VSDATRARV----LAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPV 102 (344)
T ss_dssp CCHHHHHHH----HHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEE
T ss_pred CCHHHHHHH----HHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 334444444 4455677888876 2245667788887777777888899999999999998764
No 34
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=28.90 E-value=1.1e+02 Score=24.33 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCC-------------------CceEEe-ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFK-------------------AGAWVE-NKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~-------------------~G~~VE-~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|.. .|.+.- .+++.+++-|.. .......+....++-.++.|+++.
T Consensus 368 ~kAk~LL~eAG~~~~~~~~~~~~~~~~~~~~~dG~~~~dG~~l~l~l~~~~-~~~~~~~~a~~iq~~l~~iGI~v~ 442 (621)
T 2grv_A 368 DDALELLRDAGYVSEPVPPPDNTADDPPPDNGRERIVKDGVPLTIVLGVAS-NDPTSVAVANTAADQLRNVGIDAS 442 (621)
T ss_dssp HHHHHHHHHTTCEEECCCCC------------CCEEEETTEECEEEEEEET-TCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCccccccccccccccccccCCCceeccCCeEEEEEEEeCC-CChHHHHHHHHHHHHHHhcCCEEE
Confidence 5678888988875 333421 245778887765 233344555666666677898864
No 35
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=28.90 E-value=22 Score=26.80 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHH
Q psy9708 39 VSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQ 85 (99)
Q Consensus 39 ~~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~ 85 (99)
.+++..|+|++| -.|+..=.+| ..+||+.|++.+.+..+..+.
T Consensus 159 ~rL~~KLkERLG-YLGVYYKR~p---~~F~rnl~~~ErqeLl~~Lk~ 201 (289)
T 1r8j_A 159 RDLAQRLQERLG-YLGVYYKRDP---DRFLRNLPAYESQKLHQAMQT 201 (289)
T ss_dssp HHHHHHHHHHHE-EEEEEECCCG---GGSTTTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhc-ccceeeeeCH---HHHHHhCCHHHHHHHHHHHHH
Confidence 467788999997 7899886655 578999999999888766543
No 36
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=28.77 E-value=91 Score=23.71 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCC--ce-EEe--ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFKA--GA-WVE--NKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~~--G~-~VE--~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|... |- +.| .||+.+++-|..- ......+....++-.++.|+++.
T Consensus 313 ~kAk~LL~eaG~~~~~~dg~~~~~G~~l~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~ 372 (502)
T 2noo_A 313 QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGT-DALSKSMAEIIQADMRQIGADVS 372 (502)
T ss_dssp HHHHHHHHHTTCBCCTTCSSCEETTEECEEEEEEETT-CHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHcCCCcCCCCceEccCCeEEEEEEEeCCC-ChhHHHHHHHHHHHHHhcCcEEE
Confidence 56788889988641 11 223 2457788887532 23344555666666677898864
No 37
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.56 E-value=1.3e+02 Score=20.09 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHh-CCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 35 RPEMVSLATQLIESA-GFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 35 ~~~l~~~a~~L~e~~-~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
...+..++++++.+. .|.-.+..---+--+-+-...||...+.++...+.++..++++.++
T Consensus 13 lea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni~v~ 74 (170)
T 4hhu_A 13 LEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNINVQ 74 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcceEEE
Confidence 445556666666554 2333333334444455566789999999999999999999988764
No 38
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.56 E-value=1.3e+02 Score=20.09 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=25.0
Q ss_pred eEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 65 TFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 65 a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
-+-...||...+.++...+.++..++++.++
T Consensus 125 ~i~itgvpeqvrkelakeaerl~~efni~v~ 155 (170)
T 4hhu_A 125 VIVITGVPEQVRKELAKEAERLKAEFNINVQ 155 (170)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcceEEE
Confidence 3344678999999999999999999987764
No 39
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.52 E-value=66 Score=20.00 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=24.6
Q ss_pred ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhC
Q psy9708 59 NKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 91 (99)
Q Consensus 59 ~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G 91 (99)
.+++.-+++.++.|.+..++ ..+++++.+|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~---dL~~lF~~fG 41 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEG---EVISLGLPFG 41 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHH---HHHHHHHHHC
T ss_pred CCCCCCEEEEeCCCCCCCHH---HHHHHHHhcC
Confidence 46778899999999987665 4578999999
No 40
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=28.51 E-value=51 Score=20.58 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.4
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
..+.++.|++.+.+++.+.||..+
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~ 33 (199)
T 3on2_A 10 HGSLRRVLLARAESTLEKDGVDGL 33 (199)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHHhcChhhh
Confidence 446788899999999999999754
No 41
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=28.49 E-value=1.1e+02 Score=23.90 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCC---CceEE---eec--CCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFK---AGAWV---ENK--GPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~---~G~~V---E~K--~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|.. +|.+. ..+ |+.+++-+..- ......+....++-.++.|+++.
T Consensus 375 ~kAk~LL~eAG~~~~~dG~~~~p~~G~~~~l~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~ 437 (603)
T 2d5w_A 375 KKAEALLAEMGWRKGPDGILQRTVNGRTVRFEIEYVTTAG-NVVRERTQQFFAEDLKKIGIAVK 437 (603)
T ss_dssp HHHHHHHHHTTCEECTTSCEEEEETTEEEECEEEEECBTT-CHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCcCCCCCeEeeCCCCcEeeEEEEEEecCC-ChHHHHHHHHHHHHHHhcCCEEE
Confidence 5678899999874 34333 223 67777776542 22344555566666677898764
No 42
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.36 E-value=40 Score=22.05 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHHHhCccccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAGE 96 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~~ 96 (99)
.+.+++|++.|.+++.+.||..+.
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s 31 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVT 31 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCC
Confidence 467888999999999999997653
No 43
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=27.03 E-value=1.5e+02 Score=22.69 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|...| +.+++.+..- ......+....++-.++.|+++.
T Consensus 329 ~kAk~LL~eaG~~~g-------~~l~l~~~~~-~~~~~~~a~~iq~~l~~iGI~v~ 376 (509)
T 1uqw_A 329 VKARELLKEAGYPNG-------FSTTLWSSHN-HSTAQKVLQFTQQQLAQVGIKAQ 376 (509)
T ss_dssp HHHHHHHHHHTCTTC-------EEEEEEEECC-SSSHHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHcCCCCC-------ceEEEEecCC-CchHHHHHHHHHHHHHHcCCEEE
Confidence 566888888887654 4566666542 23344555666666677898764
No 44
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=26.84 E-value=1.4e+02 Score=22.86 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCceEEeecCCeeeEeecCCC---CCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFKAGAWVENKGPLLTFHYTNTP---VELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~---~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|...| ..+++.+.... ......+....++-.++.|+++.
T Consensus 336 ~kAk~LL~eAG~~~G-------~~l~l~~~~~~~~~~~~~~~~a~~iq~~l~~iGI~v~ 387 (521)
T 3tpa_A 336 EKAKALLAEAGYPNG-------FETEIWVQPVVRPSNPNPRRTAEIIQADWAKIGVKAK 387 (521)
T ss_dssp HHHHHHHHHTTCTTC-------EEEEEECCSSCBTTBSCHHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHcCCCCC-------ceEEEEEecCCCcCCccHHHHHHHHHHHHHHcCceEE
Confidence 667888899987665 45677665321 23344556666666677898764
No 45
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=26.84 E-value=88 Score=19.71 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=27.2
Q ss_pred Eecccceeee--eccCCcc-chhHHHHHHHHHHHHHhCCCCc
Q psy9708 16 VENKGPLLTF--HYTNTPV-ELRPEMVSLATQLIESAGFKAG 54 (99)
Q Consensus 16 vgnhG~el~~--h~~~~p~-e~~~~l~~~a~~L~e~~~~~~G 54 (99)
+=.||+.|.| ..|.+.+ ++..--.+-.++|.+++||-..
T Consensus 48 ayakgidivfvaadrkmtraefsaiasrsirelkerfgfdkd 89 (115)
T 4hlb_A 48 AYAKGIDIVFVAADRKMTRAEFSAIASRSIRELKERFGFDKD 89 (115)
T ss_dssp ECSSCEEEEEEESSSCCCHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHhcCCcEEEEeccchhhHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 3458999888 4666654 5555555677899999987543
No 46
>1ny1_A Probable polysaccharide deacetylase PDAA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.6.2.3 PDB: 1w17_A 1w1b_1 1w1a_1
Probab=26.50 E-value=70 Score=22.26 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=25.7
Q ss_pred CCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhC
Q psy9708 10 CKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 50 (99)
Q Consensus 10 ~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~ 50 (99)
--.|+-+|||+..=.....-.+.+....|.+..+.|.+..|
T Consensus 92 ~~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G 132 (240)
T 1ny1_A 92 SDEGHIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITG 132 (240)
T ss_dssp HHTTCEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCcCChhcCCccccccccCCHHHHHHHHHHHHHHHHHHhC
Confidence 34578999999863222222345677777777666666666
No 47
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=26.31 E-value=59 Score=20.17 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.6
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.++.|++.+.+++.+.||.-+
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ 31 (191)
T 3on4_A 8 ISNTKERILAVAEALIQKDGYNAF 31 (191)
T ss_dssp CCCHHHHHHHHHHHHHHHHCGGGC
T ss_pred hhhHHHHHHHHHHHHHHHhCcccC
Confidence 457888999999999999999743
No 48
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=26.24 E-value=1.4e+02 Score=20.97 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=41.6
Q ss_pred CccchhHHHHHHHHHHHHHhCCCCceE----EeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 30 TPVELRPEMVSLATQLIESAGFKAGAW----VENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 30 ~p~e~~~~l~~~a~~L~e~~~~~~G~~----VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+..+-+.++ .+..+++|++|+.. --.|..++.|=.......--.++++.+.+.++++|+.+.
T Consensus 27 vs~~tr~rV----~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 92 (340)
T 1qpz_A 27 VAEETRNAV----WAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLI 92 (340)
T ss_dssp CCHHHHHHH----HHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHH----HHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 334444444 44456667777751 234566777777666666677888899999999998764
No 49
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=26.11 E-value=52 Score=20.58 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=19.3
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
..+.++.|++.+.+++.+.||.-+
T Consensus 6 ~~~~r~~Il~aa~~l~~~~G~~~~ 29 (206)
T 3dew_A 6 RADCRSRLMEVATELFAQKGFYGV 29 (206)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGC
T ss_pred chHHHHHHHHHHHHHHhcCCcccC
Confidence 356788999999999999999653
No 50
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=25.75 E-value=62 Score=20.97 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=25.9
Q ss_pred CCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccccc
Q psy9708 61 GPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGEC 97 (99)
Q Consensus 61 ~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~~~ 97 (99)
++.-+++.++.|...-.+ ..++++..+|+.+..|
T Consensus 118 ~~~~~l~v~nl~~~~~~~---~l~~~f~~~G~~v~~v 151 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEE---DLKVLFSSNGGVVKGF 151 (198)
T ss_dssp CCCCEEEECCCCTTCCHH---HHHHHHHHTTSCCCEE
T ss_pred CCccEEEEeCCCCCCCHH---HHHHHHHHcCCCceEE
Confidence 457889999999876554 6778899999765544
No 51
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=25.49 E-value=23 Score=21.37 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=14.3
Q ss_pred eEeecCCCCCchHHHHHHHH
Q psy9708 65 TFHYTNTPVELRPEMVSLAT 84 (99)
Q Consensus 65 a~HyR~v~~~~~~~v~~~~~ 84 (99)
++.-||+|++....+...|.
T Consensus 3 ~i~IRnvpdev~~~L~~rAa 22 (73)
T 3h87_C 3 DVLIRDIPDDVLASLDAIAA 22 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHH
T ss_pred ceeecCCCHHHHHHHHHHHH
Confidence 56789999887777655443
No 52
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=25.09 E-value=73 Score=22.14 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=24.8
Q ss_pred CCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhC
Q psy9708 11 KQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 50 (99)
Q Consensus 11 ~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~ 50 (99)
-.|.-+|||+..=.....-.+.+....|.+..+.|.+..|
T Consensus 82 ~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G 121 (230)
T 2y8u_A 82 DEGHQVGAHTYDHVSLPSLGYDGIASQMTRLEEVIRPALG 121 (230)
T ss_dssp HTTCEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HCCCEEEecccCCCCcccCCHHHHHHHHHHHHHHHHHHhC
Confidence 3578999999863222222345667777776666666665
No 53
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.02 E-value=56 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCchHHHHHHHHHHHHHhCccccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAGE 96 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~~ 96 (99)
.+.+..|++.+.+++.+.||.-+.
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s 36 (203)
T 3ccy_A 13 ENIRDTIIERAAAMFARQGYSETS 36 (203)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTTSC
T ss_pred hhHHHHHHHHHHHHHHHcCcccCC
Confidence 466888999999999999997653
No 54
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=25.01 E-value=54 Score=21.61 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.++.|++.+.+++.+.||..+
T Consensus 33 ~~~~r~~Il~AA~~lf~~~G~~~~ 56 (237)
T 3kkd_A 33 SEQRRQAILDAAMRLIVRDGVRAV 56 (237)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGC
T ss_pred hHHHHHHHHHHHHHHHHhcChhhc
Confidence 346788899999999999999754
No 55
>2llz_A Uncharacterized protein YJDK; RNAse, biofilm, unknown function; NMR {Escherichia coli}
Probab=24.56 E-value=77 Score=20.24 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=23.3
Q ss_pred eecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCcccc
Q psy9708 58 ENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 58 E~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
|-|.+++||||-+ .--..+...+....+.||-.+
T Consensus 8 ~~~~YVVTf~y~e----~~Lt~~~eL~~~lt~aGF~tt 41 (100)
T 2llz_A 8 KFNTYVVSFDYPS----SYSSVFLRLRSLMYDMNFSSI 41 (100)
T ss_dssp CCCCEEEEEECCG----GGHHHHHHHHHHHHHTTEESE
T ss_pred cceEEEEEEEecc----cchHHHHHHHHHHHhCCceeE
Confidence 4478999999966 223335566777888888654
No 56
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6
Probab=24.40 E-value=74 Score=23.33 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=26.1
Q ss_pred CCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhC
Q psy9708 11 KQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 50 (99)
Q Consensus 11 ~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~ 50 (99)
-.|+=+||||..-.....-.+.+.+..|.+..+.|.+..|
T Consensus 123 ~~GhEIg~H~~~H~~~~~ls~~~~~~ei~~~~~~l~~~~G 162 (321)
T 3s6o_A 123 ELGHEIACHGWRWIHYQDMTPEREAEHMRLGMEAIERVTG 162 (321)
T ss_dssp HTTCEEEECCSSCSCCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HcCCEEeeCCccccccccCCHHHHHHHHHHHHHHHHHHhC
Confidence 3578899999874333333345677777777666666666
No 57
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=24.16 E-value=79 Score=21.59 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=25.1
Q ss_pred CCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhC
Q psy9708 10 CKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 50 (99)
Q Consensus 10 ~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~ 50 (99)
--.|.-+|||+..=.....-.+.++...|....+.|.+..|
T Consensus 55 ~~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G 95 (216)
T 2c71_A 55 VNSGHEIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAG 95 (216)
T ss_dssp HHTTCEEEECCSSSSCCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCCCEEeeCCcCCcchhhCCHHHHHHHHHHHHHHHHHhhC
Confidence 34578999999862221122345677777776666666555
No 58
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=24.05 E-value=1.2e+02 Score=20.17 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=38.2
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHH
Q psy9708 31 PVELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIES 89 (99)
Q Consensus 31 p~e~~~~l~~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~ 89 (99)
|.+..+.+.++...|....+. +.=++-+|+ .-+++.+ .+++.+..++++..
T Consensus 16 p~~~~~~l~~~~~~l~~~~~~------~~~~~HiTL-lG~~~~~-~~~l~~~L~~~a~~ 66 (189)
T 1jh6_A 16 DEESEPRFKKLMEALRSEFTG------PRFVPHVTV-AVSAYLT-ADEAKKMFESACDG 66 (189)
T ss_dssp CTTTHHHHHHHHHHHHHHHTC------CCCCCCEEE-EEEEEEC-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCC------CCCCCEEEE-eCCCCCC-HHHHHHHHHHHHhh
Confidence 668888888888888877653 223888888 7777666 77888888887643
No 59
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=24.00 E-value=63 Score=20.67 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=20.6
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.+..|++.|.+++.+.||.-+
T Consensus 8 ~~~~r~~Il~aA~~lf~~~G~~~~ 31 (197)
T 2f07_A 8 TSGKYEKILQAAIEVISEKGLDKA 31 (197)
T ss_dssp CCSHHHHHHHHHHHHHHHHCTTTC
T ss_pred hhHHHHHHHHHHHHHHHHhCcccC
Confidence 457788899999999999999754
No 60
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=23.72 E-value=77 Score=19.68 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=20.2
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+...+..|++.+.+++.+.||.-+
T Consensus 6 ~~~~r~~Il~aa~~l~~~~G~~~~ 29 (183)
T 1zk8_A 6 IGLTLQKIVETAAEIADANGVQEV 29 (183)
T ss_dssp CCCCHHHHHHHHHHHHHHHCGGGC
T ss_pred hHHHHHHHHHHHHHHHHhcCcccc
Confidence 346788999999999999999754
No 61
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=23.71 E-value=46 Score=21.31 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHHHHhCccccc
Q psy9708 74 ELRPEMVSLATQLIESAGFKAGE 96 (99)
Q Consensus 74 ~~~~~v~~~~~~~~~~~G~~~~~ 96 (99)
+.+..|++.|.+++.+.||..+.
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s 32 (194)
T 2nx4_A 10 ERRRSITAAAWRLIAARGIEAAN 32 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHHHHHHHhcCcccCC
Confidence 46788999999999999997653
No 62
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=23.66 E-value=59 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=17.6
Q ss_pred CchHHHHHHHHHHHHHhCcc
Q psy9708 74 ELRPEMVSLATQLIESAGFK 93 (99)
Q Consensus 74 ~~~~~v~~~~~~~~~~~G~~ 93 (99)
+.+..|++.+.+++.+.||.
T Consensus 15 ~~r~~Il~aA~~lf~~~G~~ 34 (194)
T 2q24_A 15 RNRDKILAAAVRVFSEEGLD 34 (194)
T ss_dssp -CHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhcCcC
Confidence 55788999999999999997
No 63
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=23.43 E-value=41 Score=21.71 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHHHHHhCcccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
++.+..|++.|.+++.+.||..+
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~ 30 (203)
T 3cdl_A 8 DQKRESIVQAAIAEFGDRGFEIT 30 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTC
T ss_pred hhHHHHHHHHHHHHHHHcCchhc
Confidence 45678899999999999999754
No 64
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.36 E-value=55 Score=21.15 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=19.1
Q ss_pred CchHHHHHHHHHHHHHhCccccc
Q psy9708 74 ELRPEMVSLATQLIESAGFKAGE 96 (99)
Q Consensus 74 ~~~~~v~~~~~~~~~~~G~~~~~ 96 (99)
..++.|++.|.+++.+.||..+.
T Consensus 11 ~~r~~Il~aA~~lF~~~Gy~~ts 33 (202)
T 2i10_A 11 FDDQVALQTAMELFWRQGYEGTS 33 (202)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCC
T ss_pred CCHHHHHHHHHHHHHHhCcccCC
Confidence 45778999999999999998653
No 65
>2j13_A Polysaccharide deacetylase; family 4, peptidoglycan, hydrolase, bacterial cell WALL, carbohydrate esterase; 1.7A {Bacillus anthracis} SCOP: c.6.2.3
Probab=23.22 E-value=90 Score=21.91 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=26.6
Q ss_pred hCCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhCC
Q psy9708 9 YCKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGF 51 (99)
Q Consensus 9 v~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~~ 51 (99)
+--.|.-+|||+..=.....-.+.+....|....+.|.+..|.
T Consensus 103 ~~~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G~ 145 (247)
T 2j13_A 103 MKDEGHIIGNHSWSHPDFTAVNDEKLREELTSVTEEIKKVTGQ 145 (247)
T ss_dssp HHHTTCEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCEEEecCCCCcChhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3345789999998632222223456677777776667666664
No 66
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=22.96 E-value=1.6e+02 Score=22.52 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCCceEEeecCCeeeEeecCCC---CCchHHHHHHHHHHHHHhCcccc
Q psy9708 40 SLATQLIESAGFKAGAWVENKGPLLTFHYTNTP---VELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 40 ~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR~v~---~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.|++|.++.|...| ..+++.+.... ......+....++-.++.|+++.
T Consensus 331 ~kAk~LL~eAG~~~g-------~~l~l~~~~~~~~~~~~~~~~a~~iq~~l~~iGI~v~ 382 (522)
T 3m8u_A 331 EKAKQLLKEAGFENG-------FETDIWVQPVVRASNPNPRRMAELVQSDWEKVGVKSK 382 (522)
T ss_dssp HHHHHHHHHTTCTTC-------EEEEEECCSSCBTTBSCHHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHcCCCCC-------ceEEEEEecccccCCchHHHHHHHHHHHHHHcCceEE
Confidence 677889999987665 45667665321 23344556666666677898774
No 67
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=22.85 E-value=6.2 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=16.1
Q ss_pred HHHhhh-CCCC-eEEecccceeeee
Q psy9708 4 WIERHY-CKQG-AWVENKGPLLTFH 26 (99)
Q Consensus 4 dl~~~v-~~~g-~~vgnhG~el~~h 26 (99)
|+|+.. ..+| +-=|.||++|+..
T Consensus 23 dIRe~Y~~kdG~~~PgkKGIsL~~~ 47 (66)
T 1pcf_A 23 DIREYWMDPEGEMKPGRKGISLNPE 47 (66)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECHH
T ss_pred EEEEEEECCCCcCCCCccccccCHH
Confidence 345554 6677 6678899998874
No 68
>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A
Probab=22.59 E-value=91 Score=22.32 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=27.4
Q ss_pred eeeEeecCCCCCchHHHHHHHHHHHHHhCccc
Q psy9708 63 LLTFHYTNTPVELRPEMVSLATQLIESAGFKA 94 (99)
Q Consensus 63 ~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~ 94 (99)
.+++=.|..|.+..+++.+..+++++++|..+
T Consensus 252 ~~~~diR~~~~~~~~~i~~~i~~~~~~~g~~~ 283 (377)
T 3isz_A 252 YIQFNLRYCTEVTDEIIKQKVAEMLEKHNLKY 283 (377)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 46777899899999999999999999988754
No 69
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=22.40 E-value=68 Score=19.88 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=19.3
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.+..|++.+.+++.+.||..+
T Consensus 8 ~~~~r~~Il~aa~~l~~~~G~~~~ 31 (196)
T 3col_A 8 DMNKQVKIQDAVAAIILAEGPAGV 31 (196)
T ss_dssp --CHHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHHhcCcccC
Confidence 357788899999999999999653
No 70
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.00 E-value=67 Score=20.71 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.8
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.+..|++.|.+++.+.||.-+
T Consensus 6 ~~~~r~~Il~aA~~lf~~~G~~~~ 29 (202)
T 2d6y_A 6 PEATKARIFEAAVAEFARHGIAGA 29 (202)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHHHHcCcccC
Confidence 356788899999999999999654
No 71
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.56 E-value=19 Score=22.40 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=42.9
Q ss_pred CccchhHHHHHHHHHHHHHhCCC-CceEEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhC
Q psy9708 30 TPVELRPEMVSLATQLIESAGFK-AGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 91 (99)
Q Consensus 30 ~p~e~~~~l~~~a~~L~e~~~~~-~G~~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G 91 (99)
.|.+.+.++..+++....++.-- .-..||.=+--.---|..+|.....++......+....|
T Consensus 23 apdearerieklakdvkdeleegdaknmiekfrdemeqmykdapnavmeqlleeiekllkkag 85 (101)
T 2lse_A 23 APDEARERIEKLAKDVKDELEEGDAKNMIEKFRDEMEQMYKDAPNAVMEQLLEEIEKLLKKAG 85 (101)
Confidence 57889999999999888777311 112666655555666888887777777666666666665
No 72
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.88 E-value=44 Score=21.36 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.4
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.+..|++.+.+++.+.||.-+
T Consensus 11 ~~~~r~~Il~aA~~lf~~~G~~~~ 34 (217)
T 3nrg_A 11 PEEKRSRLIDVLLDEFAQNDYDSV 34 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGC
T ss_pred hHHHHHHHHHHHHHHHHhcCcccC
Confidence 456788899999999999999754
No 73
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=21.87 E-value=73 Score=19.87 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=19.4
Q ss_pred CCchHHHHHHHHHHHHHhCcccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
.+.+..|++.+.+++.+.||..+
T Consensus 10 ~~~r~~il~aa~~lf~~~G~~~~ 32 (196)
T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGL 32 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTTC
T ss_pred hHHHHHHHHHHHHHHHHhCcccC
Confidence 56788899999999999999754
No 74
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.87 E-value=74 Score=20.08 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=20.2
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.+..|++.+.+++.+.||.-+
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~ 37 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDI 37 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCC
T ss_pred ChhHHHHHHHHHHHHHHHcCcccc
Confidence 457788899999999999999653
No 75
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=21.85 E-value=2.3e+02 Score=20.55 Aligned_cols=53 Identities=25% Similarity=0.406 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCceEEeecCCeeeEeec-CCCCC-chHHHHHHHHHHHHHhCcc
Q psy9708 33 ELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYT-NTPVE-LRPEMVSLATQLIESAGFK 93 (99)
Q Consensus 33 e~~~~l~~~a~~L~e~~~~~~G~~VE~K~~~~a~HyR-~v~~~-~~~~v~~~~~~~~~~~G~~ 93 (99)
.+...+.+.++.|.+++++ .++.++|--| ..|.+ ..|.+.+..+++.++.|.+
T Consensus 195 pY~~~~~~t~~~l~e~l~~--------~~~~~~fqSrg~g~~~Wl~P~~~~~l~~l~~~~G~k 249 (310)
T 2h1v_A 195 PYPDQLHESAKLIAEGAGV--------SEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQ 249 (310)
T ss_dssp CHHHHHHHHHHHHHHHHTC--------SCEEEEEESCCCCSSCBSSCBHHHHHHHHHHHHCCS
T ss_pred ChHHHHHHHHHHHHHHcCC--------CCEEEEEEcCCCCCCCcCCCCHHHHHHHHHHHcCCc
Confidence 5889999999999999974 4677888776 33333 4566666677776664643
No 76
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=21.80 E-value=63 Score=20.68 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.1
Q ss_pred CchHHHHHHHHHHHHHhCcc
Q psy9708 74 ELRPEMVSLATQLIESAGFK 93 (99)
Q Consensus 74 ~~~~~v~~~~~~~~~~~G~~ 93 (99)
..++.|++.+.+++.+.||.
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~ 32 (196)
T 2qwt_A 13 RNRARVLEVAYDTFAAEGLG 32 (196)
T ss_dssp HHHHHHHHHHHHHHHHTCTT
T ss_pred hHHHHHHHHHHHHHHhcCCC
Confidence 45678999999999999984
No 77
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=21.75 E-value=69 Score=20.70 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.3
Q ss_pred CCchHHHHHHHHHHHHHhCccccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAGE 96 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~~ 96 (99)
.+.+..|++.|.+++.+.||..+.
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s 33 (219)
T 2w53_A 10 QATREGILDAAEACFHEHGVARTT 33 (219)
T ss_dssp GCCHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCC
Confidence 466888999999999999997653
No 78
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=21.49 E-value=69 Score=19.95 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=19.4
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.+..|++.+.+++.+.||.-+
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~ 31 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGV 31 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTC
T ss_pred hHhHHHHHHHHHHHHHHHCCcccC
Confidence 457888899999999999999643
No 79
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4 carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum} SCOP: c.6.2.3
Probab=21.43 E-value=75 Score=22.35 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=25.3
Q ss_pred hCCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhC
Q psy9708 9 YCKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 50 (99)
Q Consensus 9 v~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~ 50 (99)
+--.|.-+|||+..=.....-.+.+....|.+..+.|.+..|
T Consensus 94 i~~~GheIg~Ht~~H~~l~~ls~~~~~~ei~~~~~~l~~~~G 135 (254)
T 2iw0_A 94 MRADGHLVGSHTYAHPDLNTLSSADRISQMRQLEEATRRIDG 135 (254)
T ss_dssp HHHTTCEEEECCSSCCCGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCEEEeeccCCCCcccCCHHHHHHHHHHHHHHHHHHhC
Confidence 334578999999762222222345667777766666666555
No 80
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=21.29 E-value=71 Score=20.33 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=19.9
Q ss_pred CCCchHHHHHHHHHHHHHhCcccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
+.+.+..|++.+.+++.+.||..+
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~ 32 (216)
T 3f0c_A 9 EDGKLELIINAAQKRFAHYGLCKT 32 (216)
T ss_dssp -CCHHHHHHHHHHHHHHHHCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcC
Confidence 457788899999999999999653
No 81
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.14 E-value=83 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.7
Q ss_pred CCchHHHHHHHHHHHHHhCcccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
.+.++.|++.+.+++.+.||..+
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~ 30 (193)
T 2dg8_A 8 PQRRERILAATLDLIAEEGIARV 30 (193)
T ss_dssp TTHHHHHHHHHHHHHHHHCGGGC
T ss_pred hhHHHHHHHHHHHHHHHhChhhc
Confidence 46788899999999999999654
No 82
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=21.06 E-value=57 Score=21.10 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=19.6
Q ss_pred CCchHHHHHHHHHHHHHhCcccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
.+.+..|++.|.+++.+.||..+
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ 32 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEKGVGTT 32 (210)
T ss_dssp THHHHHHHHHHHHHHHHSCTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCcccc
Confidence 45678899999999999999754
No 83
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.71 E-value=1.1e+02 Score=21.54 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=29.6
Q ss_pred CccchhHHHHHHHHHHHHHhCCCCce----EEeecCCeeeEeecCCCCCchHHHHHHHHHHHHHhCccccc
Q psy9708 30 TPVELRPEMVSLATQLIESAGFKAGA----WVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGE 96 (99)
Q Consensus 30 ~p~e~~~~l~~~a~~L~e~~~~~~G~----~VE~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G~~~~~ 96 (99)
+..+-+.++.+ ..+++|++|+. .--.|..+++|=.......--.++++.+.+.++++|+.+.-
T Consensus 33 vs~~tr~rV~~----~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~ 99 (333)
T 3jvd_A 33 VSPQTREKVQA----AAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLV 99 (333)
T ss_dssp -----------------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHH----HHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEE
Confidence 33444444444 44556677665 23556778888887777777788999999999999988743
No 84
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.67 E-value=67 Score=20.38 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.1
Q ss_pred ecCCeeeEeecCCCCCchHHHHHHHHHHHHHhC
Q psy9708 59 NKGPLLTFHYTNTPVELRPEMVSLATQLIESAG 91 (99)
Q Consensus 59 ~K~~~~a~HyR~v~~~~~~~v~~~~~~~~~~~G 91 (99)
..++.-+++.++.|.+..++ ..+++++.+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~---dL~~lF~~fG 56 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEG---EVISLGLPFG 56 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHH---HHHHHHTTTS
T ss_pred cCCCCCEEEEeCCCCCCCHH---HHHHHHHhcC
Confidence 35678899999999986665 5678899998
No 85
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.64 E-value=75 Score=20.40 Aligned_cols=22 Identities=5% Similarity=0.157 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHHHHhCcccc
Q psy9708 74 ELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 74 ~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
..++.|++.|.+++.+.||..+
T Consensus 9 ~tr~~Il~AA~~lf~~~G~~~~ 30 (203)
T 2np5_A 9 TSPERLAAALFDVAAESGLEGA 30 (203)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGC
T ss_pred hhHHHHHHHHHHHHHHhChhhc
Confidence 5678899999999999999754
No 86
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=20.53 E-value=79 Score=20.63 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHHHHHHhCcccc
Q psy9708 73 VELRPEMVSLATQLIESAGFKAG 95 (99)
Q Consensus 73 ~~~~~~v~~~~~~~~~~~G~~~~ 95 (99)
.+.+..|++.+.+++.+.||.-+
T Consensus 8 ~~~r~~Il~aA~~lf~~~Gy~~t 30 (215)
T 1ui5_A 8 EQTRATIIGAAADLFDRRGYEST 30 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHHHHHhCcccC
Confidence 46788899999999999999754
No 87
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=20.50 E-value=48 Score=20.93 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=21.7
Q ss_pred ecCCCCCchHHHHHHHHHHHHHhCccc
Q psy9708 68 YTNTPVELRPEMVSLATQLIESAGFKA 94 (99)
Q Consensus 68 yR~v~~~~~~~v~~~~~~~~~~~G~~~ 94 (99)
|.-..+...+++++++++.+++.||.+
T Consensus 4 ~~~~s~~s~~e~~~~l~~al~~~Gf~v 30 (129)
T 1j3m_A 4 MRKTLKATLAEARAQVEAALKEEGFGI 30 (129)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHCCCEE
Confidence 334445678999999999999999986
No 88
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.33 E-value=65 Score=20.26 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=19.4
Q ss_pred CCCchHHHHHHHHHHHHHhCccc
Q psy9708 72 PVELRPEMVSLATQLIESAGFKA 94 (99)
Q Consensus 72 ~~~~~~~v~~~~~~~~~~~G~~~ 94 (99)
..+.+..|++.+.+++.+.||.-
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~ 36 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGA 36 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc
Confidence 34667889999999999999874
No 89
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=20.03 E-value=81 Score=21.70 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=42.5
Q ss_pred HHHhhhCCCCeEEecccceeeeeccCCccchhHHHHHHHHHHHHHhCCCCce---------EEeecCCeeeEeecCCCCC
Q psy9708 4 WIERHYCKQGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGA---------WVENKGPLLTFHYTNTPVE 74 (99)
Q Consensus 4 dl~~~v~~~g~~vgnhG~el~~h~~~~p~e~~~~l~~~a~~L~e~~~~~~G~---------~VE~K~~~~a~HyR~v~~~ 74 (99)
.+-..+...|..=|+|=|-|||.-+--...+- ..|+++++..-.. .|.+.+|++++.+.++|..
T Consensus 30 ~vL~~va~~g~LPg~HHFyITF~T~~pGV~i~-------d~L~~~YP~EMTIVLQhQF~dL~V~e~~FsV~LsFgg~pe~ 102 (157)
T 2qas_A 30 AALKKAAAPGGLPEPHHLYITFKTKAAGVSGP-------QDLLSKYPDEMTIVLQHQYWDLAPGETFFSVTLKFGGQPKR 102 (157)
T ss_dssp HHHHHHSSTTCSCTTCCEEEEEETTSTTCBCC-------HHHHHHSSSEEEEEESSSCEEEEECSSEEEEEEEETTEEEE
T ss_pred HHHHHHHHcCCCCCccEEEEEEecCCCCccCC-------HHHHhhCCCceEEEEEeeecCcEEecCcEEEEEEeCCeeeE
Confidence 33344666666778999999996443333333 3367777633222 6888889999999998753
Done!