RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9708
(99 letters)
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural
genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP:
c.108.1.15
Length = 239
Score = 48.1 bits (115), Expect = 4e-08
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 13 GAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFKAGAWVENKGPLLTFHYTNTP 72
GA + G Y N + G + K + +H
Sbjct: 67 GACSKING---QIVYNNGSDRFLGVFDRIYEDTRSWVSDFPGLRIYRKNLAVLYHLGLMG 123
Query: 73 VELRPEMVSLATQLIESAGFK 93
+++P++ S ++ G +
Sbjct: 124 ADMKPKLRSRIEEIARIFGVE 144
Score = 42.7 bits (101), Expect = 2e-06
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 12 QGAWVENKGPLLTFHYTNTPVELRPEMVSLATQLIESAGFK 52
G + K + +H +++P++ S ++ G +
Sbjct: 104 PGLRIYRKNLAVLYHLGLMGADMKPKLRSRIEEIARIFGVE 144
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Length = 168
Score = 29.5 bits (67), Expect = 0.11
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 8/43 (18%)
Query: 44 QLIESAGFKAGAWVENKGPLLTFHYTNTPVELRPEMVSLATQL 86
Q + AG + N G + V EM +
Sbjct: 132 QALARAGIDEAHSMHNHG----EDWGAAAV----EMAVKFGKN 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.31
Identities = 22/114 (19%), Positives = 31/114 (27%), Gaps = 53/114 (46%)
Query: 33 ELRPEM----VSLATQLIESA--------------------GFKAGAWVENKG------- 61
ELR ++ L LI+ + G W+EN
Sbjct: 172 ELR-DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 62 --------PLLTF----HYTNT-------PVELRPEMVSLAT--QLIESAGFKA 94
PL+ HY T P ELR + Q + +A A
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase,
MCSG, midwest center for structu genomics, PSI; 1.65A
{Vibrio parahaemolyticus}
Length = 177
Score = 27.2 bits (61), Expect = 0.81
Identities = 3/29 (10%), Positives = 11/29 (37%)
Query: 71 TPVELRPEMVSLATQLIESAGFKAGECEL 99
+R ++V + + + + + E
Sbjct: 46 LDYPIRCKLVDAFIKDMGLSNVQRSDLEQ 74
Score = 24.1 bits (53), Expect = 8.1
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 6/49 (12%)
Query: 30 TPVELRPEMVSLATQLIESAGFKAGAW-VENKGPLLTFHYT-NTPVELR 76
+R ++V + + + + P + T L
Sbjct: 46 LDYPIRCKLVDAFIKDMGLSNVQRSDLEQALYQP----GQSVTTYALLE 90
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc
genomics, center for structural genomics of infectious
DISE csgid; 2.05A {Francisella tularensis subsp}
Length = 246
Score = 26.7 bits (60), Expect = 1.1
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 20/73 (27%)
Query: 26 HYTNTP--VELRPEMVSLATQLIESAGF-KAGAWVENKGPLLTFHYTNTPVELRPEMVSL 82
+ V L MV LIES F KAGA + FH + R SL
Sbjct: 83 YGITAGMDVHL---MVKPVDALIES--FAKAGA------TSIVFHPEASEHIDR----SL 127
Query: 83 ATQLIESAGFKAG 95
QLI+S G +AG
Sbjct: 128 --QLIKSFGIQAG 138
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate,
(beta/alpha)8 barrel, carbohydrate metabolism,
isomerase; HET: S6P; 2.20A {Escherichia coli} PDB:
3ct7_A*
Length = 231
Score = 26.0 bits (58), Expect = 2.3
Identities = 14/72 (19%), Positives = 17/72 (23%), Gaps = 19/72 (26%)
Query: 27 YTNTP--VELRPEMVSLATQLIESAGF-KAGAWVENKGPLLTFHYTNTPVELRPEMVSLA 83
P L MV+ I +AGA +T H E
Sbjct: 55 LATKPLDCHL---MVTRPQDYIAQ--LARAGA------DFITLHP-----ETINGQAFRL 98
Query: 84 TQLIESAGFKAG 95
I K G
Sbjct: 99 IDEIRRHDMKVG 110
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase,
isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Length = 230
Score = 25.6 bits (57), Expect = 2.5
Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 32/79 (40%)
Query: 27 YTNTP--VELRPEMVSLATQLIESAGF-KAGAWVENKGPLLTFHYTNTPVELRPEMVSLA 83
T V L M+ + +E F KAGA +++ H E A
Sbjct: 60 LTKKTLDVHL---MIVEPEKYVED--FAKAGA------DIISVH---------VE--HNA 97
Query: 84 T-------QLIESAGFKAG 95
+ I G KAG
Sbjct: 98 SPHLHRTLCQIRELGKKAG 116
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol
5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus
pyogenes} SCOP: c.1.2.2
Length = 220
Score = 25.1 bits (56), Expect = 3.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 20/72 (27%)
Query: 27 YTNTP--VELRPEMVSLATQLIESAGF-KAGAWVENKGPLLTFHYTNTPVELRPEMVSLA 83
++ L MV + +E+ F +AGA ++T H +T +L
Sbjct: 59 HSKLVFDCHL---MVVDPERYVEA--FAQAGA------DIMTIHTESTRHIHG----AL- 102
Query: 84 TQLIESAGFKAG 95
Q I++AG KAG
Sbjct: 103 -QKIKAAGMKAG 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 5.6
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 24/71 (33%)
Query: 33 ELRPE-------MV-----SLATQLIESAGFKAGA-----WVENKGPLLTFHYTNTPVEL 75
ELRP ++ +A + S + W L N+P +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETV 198
Query: 76 RPEMVSLATQL 86
+ L Q+
Sbjct: 199 LEMLQKLLYQI 209
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT,
protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A
{Moloney murine leukemia virus} PDB: 1d1u_A 1n4l_A*
1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A
2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A
1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Length = 255
Score = 24.9 bits (54), Expect = 5.9
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 14 AWVENKGPLLTFHYTNTPVELRPEM 38
AW E G L + L+
Sbjct: 9 AWAETGGMGLAVRQAPLIIPLKATS 33
Score = 24.9 bits (54), Expect = 5.9
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 55 AWVENKGPLLTFHYTNTPVELRPEM 79
AW E G L + L+
Sbjct: 9 AWAETGGMGLAVRQAPLIIPLKATS 33
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase;
rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3
PDB: 1kaq_A*
Length = 194
Score = 24.4 bits (54), Expect = 7.3
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 71 TPVELRPEMVSLATQLIESAGFKAGECEL 99
T R EM+ LA Q + FK E+
Sbjct: 56 TDSFHRVEMLKLAIQ--SNPSFKLELVEM 82
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD,
nucleotidyltransferase, pyridine nucleotide biosynthesi
transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A*
2qtm_A*
Length = 189
Score = 24.4 bits (54), Expect = 7.4
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 71 TPVELRPEMVSLATQLIESAGFKAGECEL 99
T VE R +M+ LAT+ F EL
Sbjct: 51 TSVESRLQMLELATE--AEEHFSICLEEL 77
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
2h2a_A*
Length = 189
Score = 24.0 bits (53), Expect = 9.7
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 71 TPVELRPEMVSLATQLIESAGFKAGECEL 99
V+ R M+ + E + E+
Sbjct: 51 IDVQHRLTMIQMIID--ELGFGDICDDEI 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.418
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,472,989
Number of extensions: 68692
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 18
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)