BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9709
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 310 bits (795), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 228/397 (57%), Gaps = 63/397 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID+GT + R AI+ + E + ++ I P+ GW E +P +I V+ + A
Sbjct: 6 AIDQGTTSSR-AIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLA--- 61
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
L+ L+ +DI +GITNQRET VVWD TG+P+YNAIVW DTR IVD++ D+
Sbjct: 62 LTRGNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGG---DEG 118
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT--- 333
+ K I GLP++ YFS K+ W++ NV R ++ LFG DTW++WN+TG T
Sbjct: 119 AEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTEGG 178
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG------------ 381
HVTDVTNASRTMLM++D+L W + +P ++LP+IRSSSE+YG
Sbjct: 179 VHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPGVP 238
Query: 382 ----------------------------------------KVHSNNGLVTTVAYQFGPDA 401
KV S NGL+TTV Y+ G DA
Sbjct: 239 IAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIG-DA 297
Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
+YALEGSIAV G+ V+WLRDNL + ++ + E LA KV G YFVPAF GL+APYW
Sbjct: 298 PAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYW 357
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
R DARG + G+T++ + HI RAALEA FQ+R++++
Sbjct: 358 RPDARGALVGLTRYVNRNHIARAALEATAFQSREVVD 394
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID+GT + R AI+ + E + ++ I P+ GW E +P +I V+ + A
Sbjct: 6 AIDQGTTSSR-AIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLA--- 61
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
L+ L+ +DI +GITNQRET VVWD TG+P+YNAI
Sbjct: 62 LTRGNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAI 99
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 215/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI +T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAIVW R I + +
Sbjct: 60 L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
D +DY++ GL + PYFS K+ W++ +V R + LFGTVDTWL+W +
Sbjct: 117 ---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
T HVTD TNASRTML NI +L WD + + +P +LPE+R SSE+YG+
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
V S NGL+TT+A
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
GP YALEG++ +AGA+++WLRD + L+++ ++E A KV T VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
APYW ARG I G+T+ HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 80
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI +T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 81 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAI
Sbjct: 60 L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI 101
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 215/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI +T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAIVW R I + +
Sbjct: 60 L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
D +DY++ GL + PYFS K+ W++ +V R + LFGTVDTWL+W +
Sbjct: 117 R---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
T HVTD TNASRTML NI +L WD + + +P +LPE+R SSE+YG+
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
V S NGL+TT+A
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
GP YALEG++ +AGA+++WLRD + L+++ ++E A KV T VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
APYW ARG I G+T+ HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 80
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI +T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 81 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAI
Sbjct: 60 L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI 101
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 215/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI +T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAIVW R I + +
Sbjct: 60 L---VEVLTKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
D +DY++ GL + PYFS K+ W++ +V R + LFGTVDTWL+W +
Sbjct: 117 R---DGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
T HVTD TNASRTML NI +L WD + + +P +LPE+R SSE+YG+
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
V S NGL+TT+A
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
GP YALEG++ +AGA+++WLRD + L+++ ++E A KV T VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
APYW ARG I G+T+ HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 80
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI +T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSST 59
Query: 81 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAI
Sbjct: 60 L---VEVLTKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI 101
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 281 bits (718), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 214/402 (53%), Gaps = 62/402 (15%)
Query: 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 209
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSWT 59
Query: 210 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVL 269
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAIVW R I + +
Sbjct: 60 L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLK 116
Query: 270 AKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNL 329
D +DY++ GL + PYFS K+ W++ +V R + LFGTVDTWL+W +
Sbjct: 117 ---RDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKM 173
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
T HVTD TNASRTML NI +L WD + + +P +LPE+R SSE+YG+
Sbjct: 174 TQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKG 233
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
V S NGL+TT+A
Sbjct: 234 GTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA-- 291
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
GP YALEG++ +AGA+++WLRD + L+++ ++E A KV T VY VPAF GL
Sbjct: 292 CGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
APYW ARG I G+T+ HIIRA LE+I +QTRD+LE
Sbjct: 352 GAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 393
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTT 80
T+ I +D+GT + R ++ VS + I P+ GW E DPMEI T
Sbjct: 1 TEKKYIVALDQGTTSSRAVVMDHDANIISVSQR-EFEQIYPKPGWVEHDPMEIWATQSWT 59
Query: 81 MDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ +E L+ +S D I +GITNQRETT+VW+ TG+P+YNAI
Sbjct: 60 L---VEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI 101
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 211/393 (53%), Gaps = 62/393 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
+D+GT + R AI+ L V + + P+ GW E DP+EI + TT+ A E
Sbjct: 6 ALDQGTTSSR-AILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWE---TTLWAAREV 61
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
L G +++ LGITNQRETT++WD TG+PL+NAIVW D R + + + AK
Sbjct: 62 LRRAGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAK---GL 118
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ + GL PYFS KL WL++NV ++ + FGTVDTWL+WNLTG H
Sbjct: 119 EPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGKVHA 178
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK-------------- 382
TD TNASRT+L N+ +L WDP L + +P +LPE+R S +G+
Sbjct: 179 TDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGAPVPIRG 238
Query: 383 --------------------------------------VHSNNGLVTTVAYQFGPDATPI 404
V S GL+ TVA+ G AT
Sbjct: 239 VLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRAT-- 296
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD 464
YALEGS+ VAGAAV WL++ + L+ E E+LA V TGDVYFVPAF GL APYW
Sbjct: 297 YALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPY 355
Query: 465 ARGVICGMTQFTTKGHIIRAALEAICFQTRDIL 497
ARG + G+T+ T++ H+ RAALE + FQ RD++
Sbjct: 356 ARGTLLGLTRGTSRAHLARAALEGVAFQVRDVV 388
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
+D+GT + R AI+ L V + + P+ GW E DP+EI + TT+ A E
Sbjct: 6 ALDQGTTSSR-AILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWE---TTLWAAREV 61
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
L G +++ LGITNQRETT++WD TG+PL+NAI
Sbjct: 62 LRRAGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAI 99
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 211/394 (53%), Gaps = 62/394 (15%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
ID+GT + R AI+ E + PQ GW E D EI +V + E +
Sbjct: 11 IDQGTTSSR-AILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSV---LAVXTEVI 66
Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
+ + + D I +GITNQRETTVVWD +TG P+Y+AIVW + +I ++ + +Q
Sbjct: 67 NENDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQGYEQT- 125
Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVT 337
+ GL + PYF+ K+ W++ NV R + LFGT+DTWLVW L+G+ H+T
Sbjct: 126 --FRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKAAHIT 183
Query: 338 DVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--------------- 382
D +NASRT+ NI L+WD L + VP LPE+++SSE+YGK
Sbjct: 184 DYSNASRTLXFNIHDLEWDDELLELLTVPKNXLPEVKASSEVYGKTIDYHFYGQEVPIAG 243
Query: 383 --------------------------------------VHSNNGLVTTVAYQFGPDATPI 404
V S +GL+TT+AY G D
Sbjct: 244 VAGDQQAALFGQACFERGDVKNTYGTGGFXLXNTGDKAVKSESGLLTTIAY--GIDGKVN 301
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD 464
YALEGSI V+G+A++WLRD L +++ ++ES A +V +T VY VPAF GL PYW +
Sbjct: 302 YALEGSIFVSGSAIQWLRDGLRXINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSE 361
Query: 465 ARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
ARG I G+T+ T K H IRA LE++C+QTRD+ E
Sbjct: 362 ARGAIFGLTRGTEKEHFIRATLESLCYQTRDVXE 395
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
ID+GT + R AI+ E + PQ GW E D EI +V + E +
Sbjct: 11 IDQGTTSSR-AILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSV---LAVXTEVI 66
Query: 89 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ + + D I +GITNQRETTVVWD +TG P+Y+AI
Sbjct: 67 NENDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAI 103
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 272 bits (695), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 212/401 (52%), Gaps = 75/401 (18%)
Query: 157 VIDEGTRTVRFAI------ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTM 210
ID+GT + R + I+ + Q+E H P+ GW E DP EI Q V +T+
Sbjct: 30 AIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHF-------PKSGWVEHDPEEIWQTVVSTV 82
Query: 211 DRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLA 270
AIEK G++ +DI +GITNQRET VVWD TG+P++NAIVW D R D++
Sbjct: 83 KEAIEK---SGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKK 139
Query: 271 KFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVR-RAIKENRCLFGTVDTWLVWNL 329
K +K ++K GL + PYFS KL+WL+ NV + RA K C FGT+DT+L+W L
Sbjct: 140 K--GLEKTFVKKT-GLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELC-FGTIDTFLIWRL 195
Query: 330 TGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG-------- 381
TG C TD TNASRT+L NI WD L + VP LPE++ + +G
Sbjct: 196 TGGECFCTDATNASRTLLYNIAENAWDDELTEVLRVPKEXLPEVKDCAADFGVTDPSLFG 255
Query: 382 --------------------------------------------KVHSNNGLVTTVAYQF 397
V S N L+TT+AY+
Sbjct: 256 AAIPILGVAGDQQAATIGQACFKPGXLKSTYGTGCFALLNTGKDXVRSKNRLLTTIAYRL 315
Query: 398 GPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLY 457
D YALEGSI VAGAAV+WLRD L ++ +T SLAE + +VY VPAF GL
Sbjct: 316 --DGETTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLG 373
Query: 458 APYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
AP+W DARG I G T+ T RAALEA+C+QTRD+LE
Sbjct: 374 APHWDPDARGAIFGXTRNTGPAEFARAALEAVCYQTRDLLE 414
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 16/104 (15%)
Query: 28 VIDEGTRTVRFAI------ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTM 81
ID+GT + R + I+ + Q+E H P+ GW E DP EI Q V +T+
Sbjct: 30 AIDQGTTSTRAIVFDGNQKIAGVGQKEFKQHF-------PKSGWVEHDPEEIWQTVVSTV 82
Query: 82 DRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
AIEK G++ +DI +GITNQRET VVWD TG+P++NAI
Sbjct: 83 KEAIEK---SGITANDIAAIGITNQRETVVVWDRETGKPIHNAI 123
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 9 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 67
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+ D
Sbjct: 68 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 121
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT HV
Sbjct: 122 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 181
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
TD +NASRTML NI L+WD + +P ++LPE++S+SE+YG
Sbjct: 182 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIA 241
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
S+N L+TT+ Y G +
Sbjct: 242 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 299
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
YALEGSI VAG+A++WLRD L +++ ++E LA K +VY VPAF GL APYW
Sbjct: 300 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 359
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG + G+T+ TTK +RA L+A+ +Q++D+++
Sbjct: 360 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 394
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 9 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 67
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 68 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 102
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 8 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 66
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+ D
Sbjct: 67 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 120
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT HV
Sbjct: 121 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 180
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
TD +NASRTML NI L+WD + +P ++LPE++S+SE+YG
Sbjct: 181 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYAFYGSEVPIA 240
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
S+N L+TT+ Y G +
Sbjct: 241 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 298
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
YALEGSI VAG+A++WLRD L +++ ++E LA K +VY VPAF GL APYW
Sbjct: 299 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 358
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG + G+T+ TTK +RA L+A+ +Q++D+++
Sbjct: 359 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 393
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 8 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 66
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 67 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 101
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 208/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A
Sbjct: 9 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA--- 64
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+ D
Sbjct: 65 FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 121
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT HV
Sbjct: 122 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 181
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
TD +NASRTML NI L+WD + +P ++LPE++S+SE+YG
Sbjct: 182 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYEFYGSEVPIA 241
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
S+N L+TT+ Y G +
Sbjct: 242 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 299
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
YALEGSI VAG+A++WLRD L +++ ++E LA K +VY VPAF GL APYW
Sbjct: 300 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 359
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG + G+T+ TTK +RA L+A+ +Q++D+++
Sbjct: 360 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 394
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A
Sbjct: 9 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGA--- 64
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 65 FIESGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 102
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 8 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 66
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+ D
Sbjct: 67 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 120
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT HV
Sbjct: 121 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 180
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
TD +NASRTML NI L+WD + +P ++LPE++S+SE+YG
Sbjct: 181 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIA 240
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
S+N L+TT+ Y G +
Sbjct: 241 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 298
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
YALEGSI VAG+A++WLRD L +++ ++E LA K +VY VPAF GL APYW
Sbjct: 299 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 358
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG + G+T+ TTK +RA L+A+ +Q++D+++
Sbjct: 359 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 393
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 8 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 66
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 67 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 101
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 262 bits (670), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 21 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 79
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+ D
Sbjct: 80 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 133
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT HV
Sbjct: 134 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 193
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
TD +NASRTML NI L+WD + +P ++LPE++S+SE+YG
Sbjct: 194 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVPIA 253
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
S+N L+TT+ Y G +
Sbjct: 254 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 311
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
YALEGSI VAG+A++WLRD L +++ ++E LA K +VY VPAF GL APYW
Sbjct: 312 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 371
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG + G+T+ TTK +RA L+A+ +Q++D+++
Sbjct: 372 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 406
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 21 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 79
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 80 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 114
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 262 bits (669), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 209/395 (52%), Gaps = 62/395 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 4 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 62
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+ D
Sbjct: 63 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---DGH 116
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT HV
Sbjct: 117 TEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQVHV 176
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH------------ 384
TD +NASRTML NI L+WD + +P ++LPE++S+SE+YG
Sbjct: 177 TDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEVPIA 236
Query: 385 -----------------------------------------SNNGLVTTVAYQFGPDATP 403
S+N L+TT+ Y G +
Sbjct: 237 GMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGY--GINGKV 294
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
YALEGSI VAG+A++WLRD L +++ ++E LA K +VY VPAF GL APYW
Sbjct: 295 YYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDS 354
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG + G+T+ TTK +RA L+A+ +Q++D+++
Sbjct: 355 EARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 389
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A +
Sbjct: 4 AIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE 62
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 63 ---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 97
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 213/398 (53%), Gaps = 76/398 (19%)
Query: 158 IDEGTRTVRFAI------ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 211
+DEGT + R I I + Q E H P+ GW E +P EI A +
Sbjct: 8 LDEGTTSARAIIFDRESNIHGIGQYEFPQHY-------PRPGWVEHNPEEIWDAQLRAIK 60
Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
AI+ SA + + I +G+TNQRETT+VWD + G+PLYNAIVW R +V+++ +
Sbjct: 61 DAIQ--SAR-IEPNQIAAIGVTNQRETTLVWDKD-GKPLYNAIVWQCRRTAEMVEEIKRE 116
Query: 272 FPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG 331
+ +K GL YFSA KL WL+ NV +R ++ +FGTVDT+L++ LTG
Sbjct: 117 YGTM----IKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTG 172
Query: 332 RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS------ 385
HVTD +NASRTML NI L WD L + F +P ++LPE+R SSE+YG
Sbjct: 173 E--HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAE 230
Query: 386 ---------------------------------------------NNGLVTTVAYQFGPD 400
++ L+TT+A+ G +
Sbjct: 231 IPVSGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAW--GLN 288
Query: 401 ATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPY 460
YALEGSI V GAAV+WLRD + ++ + ETE LA K+ + VYFVPAF GL APY
Sbjct: 289 GRVSYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPY 348
Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
W + ARG+I G+T+ T + H+ RA LEAI + TRD+++
Sbjct: 349 WDQFARGIIIGITRGTGREHLARATLEAIAYLTRDVVD 386
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 55/103 (53%), Gaps = 17/103 (16%)
Query: 29 IDEGTRTVRFAI------ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 82
+DEGT + R I I + Q E H P+ GW E +P EI A +
Sbjct: 8 LDEGTTSARAIIFDRESNIHGIGQYEFPQHY-------PRPGWVEHNPEEIWDAQLRAIK 60
Query: 83 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
AI+ SA + + I +G+TNQRETT+VWD + G+PLYNAI
Sbjct: 61 DAIQ--SAR-IEPNQIAAIGVTNQRETTLVWDKD-GKPLYNAI 99
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 211/400 (52%), Gaps = 70/400 (17%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 213
ID+ T++ + + +E + HS +++ + P GW E DP+EI+ + M+
Sbjct: 13 IDQSTQSTK---VFFYDEELNIVHSNNLNHEQKCLKP--GWYEHDPIEIMTNLYNLMNEG 67
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
I+ L S I +GITNQRET ++WD TG+PLYNAIVW DTR + +V + AK+
Sbjct: 68 IKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYN 126
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
+ D ++ G + YFSA K+ WLIQN +++ I + + G ++TWL++NLT
Sbjct: 127 NND---IQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN 183
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCK------------------------------YF 363
C+ TDVTNASRT+LM+I++LQWD +CK Y
Sbjct: 184 CY-TDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYL 242
Query: 364 AVPPTILPEIRSSSEI-------------YGK------------VHSNNGLVTTVAYQFG 398
+P T + S+ I YG V+S GL+TT+ Y+F
Sbjct: 243 NIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFN 302
Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
+ P YALEGSI AG+ V WL N L+D+ E + EK T V FVPAF GLYA
Sbjct: 303 DNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYA 361
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
P WR DAR I GMT T + HI+RA LE I FQ +I++
Sbjct: 362 PRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVD 401
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 84
ID+ T++ + + +E + HS +++ + P GW E DP+EI+ + M+
Sbjct: 13 IDQSTQSTK---VFFYDEELNIVHSNNLNHEQKCLKP--GWYEHDPIEIMTNLYNLMNEG 67
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
I+ L S I +GITNQRET ++WD TG+PLYNAI
Sbjct: 68 IKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYNAI 107
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/400 (37%), Positives = 211/400 (52%), Gaps = 70/400 (17%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 213
ID+ T++ + + +E + HS +++ + P GW E DP+EI+ + M+
Sbjct: 9 IDQSTQSTK---VFFYDEELNIVHSNNLNHEQKCLKP--GWYEHDPIEIMTNLYNLMNEG 63
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
I+ L S I +GITNQRET ++WD TG+PLYNAIVW DTR + +V + AK+
Sbjct: 64 IKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYN 122
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
+ D ++ G + YFSA K+ WLIQN +++ I + + G ++TWL++NLT
Sbjct: 123 NND---IQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN 179
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCK------------------------------YF 363
C+ TDVTNASRT+LM+I++LQWD +CK Y
Sbjct: 180 CY-TDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYL 238
Query: 364 AVPPTILPEIRSSSEI-------------YGK------------VHSNNGLVTTVAYQFG 398
+P T + S+ I YG V+S GL+TT+ Y+F
Sbjct: 239 NIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFN 298
Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
+ P YALEGSI AG+ V WL N L+D+ E + EK T V FVPAF GLYA
Sbjct: 299 DNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYA 357
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
P WR DAR I GMT T + HI+RA LE I FQ +I++
Sbjct: 358 PRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVD 397
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 10/101 (9%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 84
ID+ T++ + + +E + HS +++ + P GW E DP+EI+ + M+
Sbjct: 9 IDQSTQSTK---VFFYDEELNIVHSNNLNHEQKCLKP--GWYEHDPIEIMTNLYNLMNEG 63
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
I+ L S I +GITNQRET ++WD TG+PLYNAI
Sbjct: 64 IKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPLYNAI 103
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 150/393 (38%), Gaps = 76/393 (19%)
Query: 159 DEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLS 218
D GT + ++ + + V S S I + G AE+DP I AVQ + +K+
Sbjct: 10 DVGTTATK-GVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID 68
Query: 219 AHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKD 278
I + ++Q + + + E L N+I W+D A +IV +++
Sbjct: 69 GK------IAAISWSSQXHSLIGLGSDD-ELLTNSITWADNCAKSIVQDA------KNRG 115
Query: 279 YLKPI---CGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCH 335
+ + I G P P KL WL + V + + G + ++++ LTG+
Sbjct: 116 FAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEV---FSQAQKWIG-IKEYIIFRLTGKL-- 169
Query: 336 VTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI-------YGK------ 382
VTD T A+ T ++N+ +L WD L + LP+I +++ Y K
Sbjct: 170 VTDTTXAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGIDS 229
Query: 383 -----VHSNNGLVTTV---------------------------------AYQFGPDATPI 404
+ +++G ++T+ +Y P
Sbjct: 230 DTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTH 289
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTG--DVYFVPAFGGLYAPYWR 462
Y L G + G W R L D + + G ++ F+P GG AP W
Sbjct: 290 YLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPIWD 349
Query: 463 KDARGVICGMTQFTTKGHIIRAALEAICFQTRD 495
+ARG G+T+ K RA +E I F D
Sbjct: 350 ANARGSFVGLTRXHQKPEXARAVIEGIIFNLYD 382
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 88/396 (22%), Positives = 157/396 (39%), Gaps = 75/396 (18%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTIS-PQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID GT V+ +++ Q EVV+ + T+S P W+EQDP + QA DRA++
Sbjct: 5 IDLGTSGVKVILLN--EQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKA 58
Query: 217 LS-AHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQ 275
L H L D+ LGI Q + D L AI+W+D R + A+ P
Sbjct: 59 LGDQHSLQ--DVKALGIAGQMHGATLLDAQQ-RVLRPAILWNDGRCAQECTLLEARVPQS 115
Query: 276 DKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCH 335
+ I G + P F+A KL W+ ++ + R I ++ L +L +TG
Sbjct: 116 -----RVITGNLMMPGFTAPKLLWVQRHEPEIFRQI--DKVLL--PKDYLRLRMTGE--F 164
Query: 336 VTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI---------------- 379
+D+++A+ TM +++ W ++ + + +P + SEI
Sbjct: 165 ASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMAT 224
Query: 380 ----------------YGKVHSNNGLVT-------------------TVAYQFGPDATPI 404
G V +N +++ + + F
Sbjct: 225 VPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQR 284
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD-VYFVPAFGGLYAPYWRK 463
+ L + A + + W L + NV + A++ + + V+F+P G P+
Sbjct: 285 WHLMSVMLSAASCLDWAA-KLTGLSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNP 343
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
A+GV G+T + RA LE + + D +++
Sbjct: 344 QAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDV 379
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDISTIS-PQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID GT V+ +++ Q EVV+ + T+S P W+EQDP + QA DRA++
Sbjct: 5 IDLGTSGVKVILLN--EQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKA 58
Query: 88 LS-AHGLSRDDIVTLGITNQRETTVVWD 114
L H L D+ LGI Q + D
Sbjct: 59 LGDQHSL--QDVKALGIAGQMHGATLLD 84
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 143/391 (36%), Gaps = 68/391 (17%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
+D GT T AI+ L V S + SP GWAE+DP + + + E
Sbjct: 12 LDIGT-TSTIAILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVL---AELK 67
Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
+ G S + +T V+ D + G L +I SD R + V ++ A+ D
Sbjct: 68 TTAGESDWRPGGICVTGXLPAVVLLD-DRGAVLRPSIQQSDGRCGDEVAELRAEV---DS 123
Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVT 337
+ G V+ KL W+ ++ +V AI + G+ D ++ LTG V
Sbjct: 124 EAFLARTGNGVTQQLVTAKLRWIERHEPAVFGAIA---TVCGSYD-YINXLLTGE--RVV 177
Query: 338 DVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTT----- 392
D A +++ S + L +PP+ +P + + G V + +T
Sbjct: 178 DRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAALTGLPTGL 237
Query: 393 -----------------------VAYQFG-------PDATP---------------IYAL 407
V +FG AT +YA
Sbjct: 238 PVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPGLYAP 297
Query: 408 EGSIAVAGAAVKWLRDNLNLMDNVR---ETESLAEKVMTTGD-VYFVPAFGGLYAPYWRK 463
G A G+A+ WL L + ++LA +V D + +P F G P
Sbjct: 298 NGCXAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTPIHDP 357
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTR 494
A G G++ T+GH+ RA LEA+ R
Sbjct: 358 FASGTFTGLSLSHTRGHLWRALLEAVALAFR 388
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 20/232 (8%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTMD 211
I D GT V+ +AL + H S+ + T G EQD + AVQ
Sbjct: 7 IATFDIGTTEVK----AALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQ---- 58
Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
R G+ + + ++ Q + + D + EPL+ A+++SD R +++ A+
Sbjct: 59 RIASSWWQSGVDARRVSAIVLSGQXQNFLPLDQDH-EPLHRAVLYSDKRPLKEAEEINAR 117
Query: 272 FPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG 331
D L +P +A L L+ +S +A R + ++V LTG
Sbjct: 118 ---HGADNLWSAL---ENPXTAASILPKLVFWRASFPQAFGRLRHVVLGAKDYVVLRLTG 171
Query: 332 RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV 383
R H TD TNAS T L W L + + P + E G V
Sbjct: 172 R--HATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLXPRLLEPGEQVGGV 221
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 392 TVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVP 451
T+ +F DA Y ++G I +AG L +DN+ E +A++ ++
Sbjct: 157 TIDEKFVKDAVEDYDVDGIIGIAGTT------ELGTIDNIEELSKIAKENNIY--IHVDA 208
Query: 452 AFGGLYAPY 460
AFGGL P+
Sbjct: 209 AFGGLVIPF 217
>pdb|3GG4|A Chain A, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3GG4|B Chain B, The Crystal Structure Of Glycerol Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|A Chain A, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
pdb|3L0Q|B Chain B, The Crystal Structure Of Xlylulose Kinase From Yersinia
Pseudotuberculosis
Length = 554
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 424 NLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTT-KGHII 482
N L E E++A T D++ +P F G +P + G+I G+ TT + +
Sbjct: 360 NYILRQXAGEPENIA---FLTNDIHXLPYFHGNRSPRANPNLTGIITGLKLSTTPEDXAL 416
Query: 483 R--AALEAICFQTRDILE 498
R A ++A+ TR I+E
Sbjct: 417 RYLATIQALALGTRHIIE 434
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 32/136 (23%)
Query: 284 CGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNAS 343
CG P P+ + ++ Q S+V + E L G+ S
Sbjct: 1416 CGPPPEPFNGMVHINTDTQFGSTVNYSCNEGFRLIGS---------------------PS 1454
Query: 344 RTMLMNIDSLQWDPL--LCKYFAV--PPTILPEIRSSSEIYG--KVHSNNGLVTTVAYQF 397
T L++ +++ WD +C+ + PPTI S+ + Y + +NG V T
Sbjct: 1455 TTCLVSGNNVTWDKKAPICEIISCEPPPTI-----SNGDFYSNNRTSFHNGTVVTYQCHT 1509
Query: 398 GPDATPIYALEGSIAV 413
GPD ++ L G ++
Sbjct: 1510 GPDGEQLFELVGERSI 1525
>pdb|3P8A|A Chain A, Crystal Structure Of A Hypothetical Protein From
Staphylococcus Aureus
pdb|3P8A|B Chain B, Crystal Structure Of A Hypothetical Protein From
Staphylococcus Aureus
Length = 274
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 258 DTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYF---------SALKLSWLIQNVSSVR 308
DT D V L +QD D +KP P+F KL Q S+
Sbjct: 140 DTHKDGKVKWQLLYIXNQDDDEIKP-------PFFIQWEESDSXRTKKLQKYFQKQFSIE 192
Query: 309 RAIKENRCLFGTVDTWLVW---NLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAV 365
I +++ TV WL W ++ H TD+ + + I+ D + KY +V
Sbjct: 193 TVIVKSKNRSQTVSNWLKWFDXDIVEENDHYTDLILKNDDIYFRIE----DGKVSKYHSV 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,549,153
Number of Sequences: 62578
Number of extensions: 533291
Number of successful extensions: 1491
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 68
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)