Query psy9709
Match_columns 500
No_of_seqs 359 out of 2625
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 17:37:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 100.0 1.2E-65 2.7E-70 507.9 29.1 340 152-500 4-395 (499)
2 PLN02295 glycerol kinase 100.0 5.7E-62 1.2E-66 517.3 35.1 341 154-500 1-400 (512)
3 PTZ00294 glycerol kinase-like 100.0 3.9E-61 8.5E-66 510.3 36.3 339 154-500 3-399 (504)
4 PRK00047 glpK glycerol kinase; 100.0 2.8E-61 6.1E-66 511.0 34.2 344 149-500 1-396 (498)
5 PRK15027 xylulokinase; Provisi 100.0 4.8E-60 1E-64 499.9 31.9 328 154-500 1-380 (484)
6 TIGR01314 gntK_FGGY gluconate 100.0 2E-59 4.4E-64 497.6 31.3 331 154-499 1-393 (505)
7 TIGR01311 glycerol_kin glycero 100.0 1.1E-58 2.4E-63 490.6 34.7 339 153-500 1-392 (493)
8 COG1070 XylB Sugar (pentulose 100.0 3.5E-57 7.6E-62 478.4 31.4 338 150-500 1-394 (502)
9 PRK04123 ribulokinase; Provisi 100.0 6.2E-57 1.3E-61 483.2 33.6 339 151-500 1-432 (548)
10 PRK10331 L-fuculokinase; Provi 100.0 8.7E-57 1.9E-61 473.4 30.6 323 153-500 2-382 (470)
11 TIGR01234 L-ribulokinase L-rib 100.0 1.3E-56 2.9E-61 478.7 32.4 335 154-500 2-429 (536)
12 TIGR01315 5C_CHO_kinase FGGY-f 100.0 9.9E-57 2.1E-61 479.5 29.0 329 155-500 2-437 (541)
13 PRK10939 autoinducer-2 (AI-2) 100.0 1.6E-55 3.4E-60 469.1 28.4 332 153-500 3-402 (520)
14 TIGR01312 XylB D-xylulose kina 100.0 8.2E-55 1.8E-59 461.3 31.5 330 156-500 1-383 (481)
15 TIGR02628 fuculo_kin_coli L-fu 100.0 8.4E-55 1.8E-59 457.5 29.8 322 154-500 2-386 (465)
16 PLN02669 xylulokinase 100.0 6.4E-52 1.4E-56 441.4 29.7 336 151-500 6-440 (556)
17 KOG2517|consensus 100.0 1E-50 2.3E-55 411.5 26.5 344 152-500 5-407 (516)
18 COG1069 AraB Ribulose kinase [ 100.0 1.1E-49 2.4E-54 400.1 27.7 334 151-500 1-425 (544)
19 TIGR02627 rhamnulo_kin rhamnul 100.0 1.8E-49 4E-54 416.0 24.9 318 156-500 1-380 (454)
20 PRK10640 rhaB rhamnulokinase; 100.0 1E-44 2.3E-49 380.5 22.4 293 180-500 17-368 (471)
21 PF00370 FGGY_N: FGGY family o 100.0 6.9E-44 1.5E-48 344.4 18.7 218 154-385 1-218 (245)
22 COG0554 GlpK Glycerol kinase [ 99.9 8.8E-27 1.9E-31 231.9 10.6 147 24-175 5-198 (499)
23 KOG2531|consensus 99.9 4.6E-22 1E-26 195.2 22.4 337 150-500 6-436 (545)
24 PF00370 FGGY_N: FGGY family o 99.8 7.2E-21 1.6E-25 183.8 11.9 104 25-133 1-104 (245)
25 PRK00047 glpK glycerol kinase; 99.8 1.7E-20 3.6E-25 199.4 12.5 111 19-134 1-111 (498)
26 PLN02295 glycerol kinase 99.8 2.3E-20 5E-25 198.8 11.9 104 25-133 1-109 (512)
27 COG1070 XylB Sugar (pentulose 99.8 2.7E-20 5.8E-25 197.4 11.2 105 24-133 4-109 (502)
28 PTZ00294 glycerol kinase-like 99.8 7.1E-20 1.5E-24 194.8 12.5 106 25-134 3-110 (504)
29 PRK10331 L-fuculokinase; Provi 99.8 1.7E-19 3.7E-24 190.3 12.0 103 25-134 3-107 (470)
30 TIGR01234 L-ribulokinase L-rib 99.8 1.9E-19 4.1E-24 192.8 10.6 105 25-134 2-129 (536)
31 PRK15027 xylulokinase; Provisi 99.8 3.1E-19 6.6E-24 189.1 11.6 103 26-135 2-104 (484)
32 TIGR02628 fuculo_kin_coli L-fu 99.8 3.8E-19 8.2E-24 187.3 11.5 102 25-133 2-105 (465)
33 PRK04123 ribulokinase; Provisi 99.8 4.9E-19 1.1E-23 190.3 12.3 105 24-133 3-125 (548)
34 TIGR01311 glycerol_kin glycero 99.8 1E-18 2.2E-23 185.5 12.5 106 25-134 2-107 (493)
35 TIGR01315 5C_CHO_kinase FGGY-f 99.8 9.2E-19 2E-23 187.5 11.5 104 26-135 2-114 (541)
36 TIGR01314 gntK_FGGY gluconate 99.8 1.7E-18 3.6E-23 184.4 12.0 103 25-133 1-103 (505)
37 PRK10939 autoinducer-2 (AI-2) 99.7 6.1E-18 1.3E-22 180.6 12.5 103 25-133 4-108 (520)
38 KOG2517|consensus 99.7 3.2E-17 6.9E-22 167.6 12.2 111 23-133 5-115 (516)
39 PLN02669 xylulokinase 99.7 6.4E-17 1.4E-21 173.1 10.5 105 24-133 8-144 (556)
40 TIGR02627 rhamnulo_kin rhamnul 99.6 2.9E-16 6.3E-21 165.0 8.2 98 27-133 1-102 (454)
41 COG1069 AraB Ribulose kinase [ 99.6 4.4E-16 9.4E-21 158.0 8.5 108 24-136 3-119 (544)
42 TIGR01312 XylB D-xylulose kina 99.6 9.3E-16 2E-20 162.8 10.6 100 28-132 2-101 (481)
43 PF02782 FGGY_C: FGGY family o 99.6 7.3E-15 1.6E-19 137.1 8.2 100 401-500 34-142 (198)
44 TIGR00241 CoA_E_activ CoA-subs 99.0 2.8E-09 6E-14 103.0 10.4 114 26-179 2-115 (248)
45 PRK10640 rhaB rhamnulokinase; 98.9 3.6E-09 7.9E-14 111.7 9.2 85 39-133 3-90 (471)
46 TIGR00241 CoA_E_activ CoA-subs 98.4 5.3E-07 1.2E-11 87.1 7.1 70 154-242 1-70 (248)
47 TIGR02261 benz_CoA_red_D benzo 97.9 0.00014 3.1E-09 69.7 11.7 121 25-180 2-123 (262)
48 TIGR03192 benz_CoA_bzdQ benzoy 97.9 0.00014 3.1E-09 70.7 11.7 113 25-180 33-151 (293)
49 TIGR03286 methan_mark_15 putat 97.6 0.00038 8.2E-09 70.5 10.6 116 23-179 143-265 (404)
50 PRK13311 N-acetyl-D-glucosamin 97.6 0.00039 8.4E-09 67.5 10.0 86 155-261 2-88 (256)
51 KOG2531|consensus 97.6 0.00019 4.1E-09 72.2 7.7 87 25-116 10-108 (545)
52 PRK09698 D-allose kinase; Prov 97.6 0.00059 1.3E-08 67.9 11.2 91 151-261 2-96 (302)
53 COG1940 NagC Transcriptional r 97.5 0.00059 1.3E-08 68.3 10.4 87 24-128 6-93 (314)
54 PRK09698 D-allose kinase; Prov 97.5 0.00062 1.3E-08 67.7 10.4 76 24-119 4-79 (302)
55 PRK13311 N-acetyl-D-glucosamin 97.4 0.00066 1.4E-08 65.9 9.3 82 26-128 2-84 (256)
56 PRK09557 fructokinase; Reviewe 97.4 0.0008 1.7E-08 67.0 9.9 83 154-257 1-83 (301)
57 TIGR00744 ROK_glcA_fam ROK fam 97.4 0.00066 1.4E-08 68.0 9.4 84 28-129 2-86 (318)
58 PRK13310 N-acetyl-D-glucosamin 97.4 0.00079 1.7E-08 67.1 9.8 89 155-264 2-91 (303)
59 PRK09557 fructokinase; Reviewe 97.4 0.00064 1.4E-08 67.7 9.0 82 26-128 2-83 (301)
60 COG1924 Activator of 2-hydroxy 97.4 0.0017 3.7E-08 64.4 11.2 115 22-179 133-253 (396)
61 TIGR00744 ROK_glcA_fam ROK fam 97.4 0.001 2.2E-08 66.7 10.1 89 156-262 1-90 (318)
62 PF00480 ROK: ROK family; Int 97.4 0.001 2.2E-08 60.7 9.2 87 157-266 1-88 (179)
63 COG1940 NagC Transcriptional r 97.4 0.0014 3.1E-08 65.6 11.0 97 150-264 3-101 (314)
64 PRK13310 N-acetyl-D-glucosamin 97.3 0.001 2.2E-08 66.3 9.0 82 26-128 2-84 (303)
65 COG2971 Predicted N-acetylgluc 97.2 0.00083 1.8E-08 65.1 7.4 68 24-101 5-72 (301)
66 PRK12408 glucokinase; Provisio 97.1 0.0007 1.5E-08 68.4 5.5 77 24-128 16-98 (336)
67 smart00732 YqgFc Likely ribonu 97.1 0.0022 4.8E-08 52.2 7.2 30 26-56 3-32 (99)
68 PF00480 ROK: ROK family; Int 97.0 0.0024 5.1E-08 58.2 8.0 82 28-132 1-83 (179)
69 PF05378 Hydant_A_N: Hydantoin 97.0 0.00064 1.4E-08 61.9 4.0 79 27-122 2-80 (176)
70 PF01869 BcrAD_BadFG: BadF/Bad 97.0 0.0018 4E-08 63.3 7.4 68 27-104 1-68 (271)
71 PRK13321 pantothenate kinase; 96.7 0.0052 1.1E-07 59.6 8.0 63 26-105 2-64 (256)
72 TIGR03192 benz_CoA_bzdQ benzoy 96.7 0.0089 1.9E-07 58.4 9.3 67 153-237 32-98 (293)
73 TIGR03286 methan_mark_15 putat 96.6 0.0085 1.8E-07 60.9 8.8 72 150-240 141-212 (404)
74 TIGR02261 benz_CoA_red_D benzo 96.6 0.0094 2E-07 57.4 8.7 72 154-239 2-74 (262)
75 PRK13318 pantothenate kinase; 96.6 0.0082 1.8E-07 58.3 8.4 63 26-105 2-64 (258)
76 PF14574 DUF4445: Domain of un 96.6 0.0052 1.1E-07 63.2 6.9 81 25-105 2-91 (412)
77 PRK05082 N-acetylmannosamine k 96.5 0.011 2.3E-07 58.6 8.9 89 155-266 3-93 (291)
78 smart00732 YqgFc Likely ribonu 96.5 0.0076 1.6E-07 49.0 6.6 29 155-184 3-31 (99)
79 PRK11031 guanosine pentaphosph 96.5 0.023 5E-07 60.5 11.6 148 24-188 6-165 (496)
80 PF14574 DUF4445: Domain of un 96.5 0.0082 1.8E-07 61.7 7.7 82 154-235 2-92 (412)
81 PRK10854 exopolyphosphatase; P 96.4 0.046 9.9E-07 58.6 13.5 146 25-188 12-170 (513)
82 COG2971 Predicted N-acetylgluc 96.3 0.014 3.1E-07 56.6 7.7 70 150-230 2-72 (301)
83 PRK00292 glk glucokinase; Prov 96.2 0.012 2.5E-07 59.1 7.3 80 153-258 2-81 (316)
84 PRK12408 glucokinase; Provisio 96.2 0.0085 1.8E-07 60.6 5.8 77 153-257 16-98 (336)
85 TIGR03123 one_C_unchar_1 proba 96.1 0.0083 1.8E-07 59.5 5.4 31 28-59 2-32 (318)
86 PRK05082 N-acetylmannosamine k 96.1 0.019 4E-07 56.8 7.9 63 26-107 3-65 (291)
87 PRK14101 bifunctional glucokin 96.0 0.0066 1.4E-07 66.9 4.8 65 26-115 20-84 (638)
88 PRK15080 ethanolamine utilizat 96.0 0.17 3.6E-06 49.4 13.9 58 23-84 23-80 (267)
89 PF00349 Hexokinase_1: Hexokin 96.0 0.034 7.3E-07 52.0 8.5 73 25-104 64-138 (206)
90 PRK00292 glk glucokinase; Prov 96.0 0.015 3.3E-07 58.2 6.5 79 25-129 3-81 (316)
91 TIGR03706 exo_poly_only exopol 95.8 0.043 9.4E-07 54.5 8.8 148 26-189 2-159 (300)
92 PRK13321 pantothenate kinase; 95.7 0.028 6.1E-07 54.5 7.1 63 155-234 2-64 (256)
93 PF01869 BcrAD_BadFG: BadF/Bad 95.7 0.019 4.1E-07 56.1 5.8 67 156-232 1-67 (271)
94 PRK09472 ftsA cell division pr 95.6 0.079 1.7E-06 55.3 10.4 80 20-106 4-86 (420)
95 PRK13318 pantothenate kinase; 95.5 0.04 8.7E-07 53.5 7.5 63 155-234 2-64 (258)
96 TIGR02707 butyr_kinase butyrat 95.3 0.06 1.3E-06 54.6 8.1 66 26-102 2-70 (351)
97 PF05378 Hydant_A_N: Hydantoin 95.2 0.046 1E-06 49.7 6.2 73 156-244 2-74 (176)
98 COG0248 GppA Exopolyphosphatas 95.1 0.18 4E-06 53.2 11.0 150 25-188 4-162 (492)
99 PRK14101 bifunctional glucokin 95.0 0.029 6.3E-07 61.9 5.1 79 152-257 17-95 (638)
100 smart00842 FtsA Cell division 94.9 0.17 3.7E-06 46.5 9.1 74 27-107 2-78 (187)
101 COG1924 Activator of 2-hydroxy 94.8 0.12 2.6E-06 51.6 8.2 72 150-240 132-203 (396)
102 smart00842 FtsA Cell division 94.3 0.36 7.8E-06 44.3 9.8 74 155-235 1-77 (187)
103 TIGR00749 glk glucokinase, pro 94.1 0.075 1.6E-06 53.2 5.3 62 28-107 2-66 (316)
104 KOG1794|consensus 93.9 0.29 6.2E-06 47.2 8.3 92 24-132 3-95 (336)
105 TIGR02259 benz_CoA_red_A benzo 93.9 0.13 2.9E-06 52.0 6.3 73 409-498 298-376 (432)
106 TIGR01174 ftsA cell division p 93.5 0.43 9.4E-06 48.9 9.6 75 26-107 2-79 (371)
107 TIGR02259 benz_CoA_red_A benzo 93.4 0.094 2E-06 53.1 4.3 32 153-185 2-33 (432)
108 PLN02914 hexokinase 93.3 0.41 8.8E-06 50.5 9.0 59 25-87 96-157 (490)
109 PRK09472 ftsA cell division pr 93.3 0.74 1.6E-05 48.1 11.1 78 151-235 6-86 (420)
110 PF13941 MutL: MutL protein 93.2 0.33 7.1E-06 50.7 8.1 52 26-87 2-55 (457)
111 PF00349 Hexokinase_1: Hexokin 93.1 0.23 4.9E-06 46.4 6.2 60 154-216 64-123 (206)
112 PTZ00288 glucokinase 1; Provis 93.0 0.55 1.2E-05 48.5 9.4 89 24-129 26-116 (405)
113 COG4820 EutJ Ethanolamine util 92.7 1.4 3E-05 40.4 10.2 29 24-53 29-57 (277)
114 PRK15080 ethanolamine utilizat 92.3 0.92 2E-05 44.2 9.6 57 151-211 22-78 (267)
115 PLN02596 hexokinase-like 92.3 0.61 1.3E-05 49.2 8.7 60 23-87 96-158 (490)
116 PLN02362 hexokinase 91.9 0.86 1.9E-05 48.4 9.3 58 26-87 97-157 (509)
117 PF13941 MutL: MutL protein 91.7 0.59 1.3E-05 48.8 7.7 53 155-217 2-56 (457)
118 PLN02405 hexokinase 91.5 0.88 1.9E-05 48.2 8.9 59 25-87 96-157 (497)
119 TIGR02707 butyr_kinase butyrat 91.4 0.69 1.5E-05 46.9 7.9 68 155-231 2-70 (351)
120 PRK03011 butyrate kinase; Prov 91.2 0.36 7.7E-06 49.1 5.5 69 25-101 3-71 (358)
121 COG0849 ftsA Cell division ATP 91.0 1.6 3.4E-05 45.3 10.0 74 25-105 7-83 (418)
122 PTZ00107 hexokinase; Provision 90.8 1.4 3E-05 46.4 9.6 61 26-87 76-143 (464)
123 PRK13331 pantothenate kinase; 90.7 0.91 2E-05 43.7 7.4 58 26-107 9-66 (251)
124 PRK13317 pantothenate kinase; 90.6 0.66 1.4E-05 45.4 6.6 26 25-51 3-28 (277)
125 PRK13324 pantothenate kinase; 90.5 1.1 2.3E-05 43.5 7.8 65 26-106 2-66 (258)
126 TIGR01174 ftsA cell division p 90.1 2.2 4.9E-05 43.6 10.4 81 155-244 2-85 (371)
127 KOG1794|consensus 89.6 1.9 4.2E-05 41.7 8.5 74 152-235 2-76 (336)
128 PTZ00288 glucokinase 1; Provis 89.2 2 4.4E-05 44.3 9.1 57 152-215 25-83 (405)
129 TIGR02529 EutJ ethanolamine ut 89.0 1.2 2.5E-05 42.7 6.8 53 28-84 1-53 (239)
130 TIGR00749 glk glucokinase, pro 87.9 0.7 1.5E-05 46.2 4.7 24 156-180 1-24 (316)
131 COG0849 ftsA Cell division ATP 87.9 4.3 9.4E-05 42.0 10.4 59 154-215 7-68 (418)
132 PRK12440 acetate kinase; Revie 87.8 2.3 4.9E-05 43.6 8.2 33 21-53 1-33 (397)
133 TIGR01175 pilM type IV pilus a 87.4 3.6 7.8E-05 41.6 9.6 75 24-107 3-79 (348)
134 PTZ00340 O-sialoglycoprotein e 87.4 2.9 6.3E-05 42.2 8.6 76 25-105 2-78 (345)
135 PRK10719 eutA reactivating fac 87.1 3.2 6.9E-05 43.3 8.9 35 150-186 143-177 (475)
136 PRK13320 pantothenate kinase; 86.4 2.4 5.2E-05 40.7 7.3 25 26-52 4-28 (244)
137 COG5026 Hexokinase [Carbohydra 86.2 2.2 4.7E-05 43.7 7.0 60 25-87 76-136 (466)
138 PRK07058 acetate kinase; Provi 86.1 3.1 6.8E-05 42.5 8.1 32 22-53 2-35 (396)
139 TIGR00555 panK_eukar pantothen 85.7 3.2 6.9E-05 40.6 7.7 25 27-52 3-27 (279)
140 PRK09604 UGMP family protein; 85.0 4.3 9.3E-05 40.9 8.6 77 25-105 2-80 (332)
141 PRK07157 acetate kinase; Provi 84.9 2.8 6.1E-05 42.9 7.2 28 26-53 5-32 (400)
142 PRK13326 pantothenate kinase; 84.2 3.7 8.1E-05 39.8 7.4 29 26-56 8-36 (262)
143 PF11104 PilM_2: Type IV pilus 84.0 4.3 9.4E-05 41.0 8.2 92 28-129 1-98 (340)
144 PRK13324 pantothenate kinase; 83.7 5 0.00011 38.9 8.1 64 155-234 2-65 (258)
145 PLN02914 hexokinase 83.6 2.1 4.5E-05 45.3 5.8 60 153-216 95-157 (490)
146 PRK11031 guanosine pentaphosph 83.3 4.4 9.5E-05 43.3 8.2 80 152-236 5-88 (496)
147 PF11104 PilM_2: Type IV pilus 83.3 3.9 8.4E-05 41.4 7.5 55 157-212 1-57 (340)
148 PRK10854 exopolyphosphatase; P 83.2 4.3 9.4E-05 43.5 8.2 79 153-236 11-93 (513)
149 TIGR02529 EutJ ethanolamine ut 83.1 4.7 0.0001 38.6 7.6 52 157-212 1-52 (239)
150 COG3734 DgoK 2-keto-3-deoxy-ga 83.0 1.7 3.7E-05 41.9 4.4 34 21-55 2-35 (306)
151 PF06277 EutA: Ethanolamine ut 82.8 4.4 9.6E-05 42.3 7.6 34 149-184 139-172 (473)
152 PF00871 Acetate_kinase: Aceto 82.7 1.4 3E-05 45.3 4.0 28 26-53 2-29 (388)
153 PLN02362 hexokinase 82.5 2.4 5.3E-05 45.1 5.8 58 153-216 95-157 (509)
154 PLN02666 5-oxoprolinase 82.4 2 4.4E-05 50.7 5.6 88 24-121 9-99 (1275)
155 TIGR00016 ackA acetate kinase. 81.9 3.8 8.3E-05 42.1 6.7 28 26-53 6-34 (404)
156 PLN02405 hexokinase 81.8 2.8 6.1E-05 44.4 6.0 60 153-216 95-157 (497)
157 PLN02596 hexokinase-like 81.8 2.7 5.7E-05 44.5 5.7 60 153-216 96-158 (490)
158 TIGR03706 exo_poly_only exopol 81.8 4.7 0.0001 40.0 7.3 77 155-236 2-82 (300)
159 COG4020 Uncharacterized protei 81.6 3.4 7.3E-05 39.1 5.7 63 25-107 5-67 (332)
160 TIGR01175 pilM type IV pilus a 81.3 5.2 0.00011 40.4 7.6 74 153-235 3-78 (348)
161 COG3894 Uncharacterized metal- 80.8 2 4.4E-05 44.6 4.3 38 150-187 161-198 (614)
162 PRK12397 propionate kinase; Re 79.9 4.2 9E-05 41.8 6.2 32 21-53 1-32 (404)
163 PTZ00107 hexokinase; Provision 79.6 4.5 9.8E-05 42.6 6.6 62 154-216 75-143 (464)
164 TIGR03723 bact_gcp putative gl 79.6 7.9 0.00017 38.7 8.1 84 26-113 1-86 (314)
165 PRK09605 bifunctional UGMP fam 79.6 7.9 0.00017 41.8 8.7 76 25-106 2-78 (535)
166 TIGR00671 baf pantothenate kin 79.5 4.9 0.00011 38.6 6.3 29 27-57 2-30 (243)
167 PF14450 FtsA: Cell division p 79.4 4 8.6E-05 34.4 5.1 56 155-213 1-59 (120)
168 PRK13326 pantothenate kinase; 79.2 5.6 0.00012 38.6 6.6 26 154-181 7-32 (262)
169 COG4820 EutJ Ethanolamine util 79.2 5.4 0.00012 36.6 6.0 32 151-183 27-58 (277)
170 TIGR03123 one_C_unchar_1 proba 79.1 2.3 5.1E-05 42.3 4.0 31 156-187 1-31 (318)
171 TIGR01319 glmL_fam conserved h 78.5 5.9 0.00013 41.3 6.8 49 29-87 1-50 (463)
172 TIGR00329 gcp_kae1 metallohydr 78.3 8.2 0.00018 38.4 7.7 77 27-107 1-79 (305)
173 COG3894 Uncharacterized metal- 78.2 5.8 0.00012 41.4 6.5 32 24-55 164-195 (614)
174 COG4972 PilM Tfp pilus assembl 78.2 5.9 0.00013 39.2 6.4 64 25-97 11-77 (354)
175 COG4972 PilM Tfp pilus assembl 77.9 6.2 0.00013 39.1 6.4 57 154-216 11-70 (354)
176 PF04312 DUF460: Protein of un 77.6 7.8 0.00017 33.3 6.2 31 23-55 31-61 (138)
177 KOG1369|consensus 76.8 8.7 0.00019 40.3 7.5 58 26-87 88-147 (474)
178 COG4819 EutA Ethanolamine util 76.8 10 0.00022 37.6 7.4 31 149-181 141-171 (473)
179 PF14450 FtsA: Cell division p 76.7 3.1 6.6E-05 35.1 3.6 56 26-84 1-59 (120)
180 PRK13331 pantothenate kinase; 76.6 8.3 0.00018 37.1 6.9 24 154-179 8-31 (251)
181 PRK12379 propionate/acetate ki 75.8 9.7 0.00021 39.1 7.5 31 23-53 4-34 (396)
182 COG3734 DgoK 2-keto-3-deoxy-ga 75.4 7.6 0.00017 37.6 6.1 32 151-183 3-34 (306)
183 PRK12440 acetate kinase; Revie 75.3 11 0.00024 38.6 7.7 30 150-179 1-30 (397)
184 COG0248 GppA Exopolyphosphatas 74.8 4.9 0.00011 42.7 5.2 79 153-236 3-85 (492)
185 PF02685 Glucokinase: Glucokin 74.7 9.9 0.00021 38.0 7.1 20 28-48 2-21 (316)
186 TIGR03722 arch_KAE1 universal 74.3 11 0.00024 37.7 7.5 73 27-105 1-74 (322)
187 TIGR01319 glmL_fam conserved h 74.2 7.7 0.00017 40.5 6.3 49 158-216 1-50 (463)
188 PRK13320 pantothenate kinase; 74.0 13 0.00029 35.6 7.6 24 155-180 4-27 (244)
189 PRK03011 butyrate kinase; Prov 73.9 5.2 0.00011 40.8 5.0 70 154-231 3-72 (358)
190 PTZ00340 O-sialoglycoprotein e 73.7 12 0.00027 37.7 7.6 76 154-235 2-79 (345)
191 TIGR00671 baf pantothenate kin 73.6 9.3 0.0002 36.7 6.4 28 156-185 2-29 (243)
192 COG1214 Inactive homolog of me 73.6 7.8 0.00017 36.6 5.8 73 25-113 2-74 (220)
193 COG0145 HyuA N-methylhydantoin 73.3 8.8 0.00019 42.4 6.9 76 25-119 3-78 (674)
194 COG1548 Predicted transcriptio 73.0 8.2 0.00018 36.9 5.6 23 26-51 5-27 (330)
195 COG5026 Hexokinase [Carbohydra 72.6 6.9 0.00015 40.2 5.4 60 154-216 76-136 (466)
196 COG1521 Pantothenate kinase ty 70.4 12 0.00027 35.8 6.4 29 27-57 3-31 (251)
197 TIGR03725 bact_YeaZ universal 69.9 15 0.00033 34.0 6.9 69 26-112 1-69 (202)
198 PF00871 Acetate_kinase: Aceto 68.6 8.5 0.00018 39.6 5.2 26 155-180 2-27 (388)
199 PF07736 CM_1: Chorismate muta 67.9 8.8 0.00019 32.1 4.2 37 68-107 13-49 (118)
200 PF02685 Glucokinase: Glucokin 67.8 20 0.00044 35.8 7.6 21 156-176 1-21 (316)
201 PRK00976 hypothetical protein; 67.2 15 0.00033 36.6 6.5 18 26-43 3-20 (326)
202 KOG1386|consensus 66.3 20 0.00043 37.5 7.2 85 151-235 7-96 (501)
203 PRK00039 ruvC Holliday junctio 66.0 44 0.00096 29.9 8.7 54 25-87 3-59 (164)
204 COG0533 QRI7 Metal-dependent p 64.4 25 0.00054 35.2 7.3 81 25-111 2-84 (342)
205 COG0837 Glk Glucokinase [Carbo 64.3 19 0.00041 35.4 6.2 25 24-49 7-31 (320)
206 PF02075 RuvC: Crossover junct 63.5 33 0.00071 30.2 7.3 53 26-87 1-56 (149)
207 PF07318 DUF1464: Protein of u 63.4 7.5 0.00016 38.9 3.5 42 28-77 1-42 (343)
208 PLN02666 5-oxoprolinase 63.1 11 0.00025 44.7 5.5 33 151-184 7-39 (1275)
209 cd02185 AroH Chorismate mutase 62.2 12 0.00026 31.2 3.9 38 67-107 12-49 (117)
210 COG4020 Uncharacterized protei 61.4 41 0.00089 32.1 7.7 21 153-173 3-23 (332)
211 PRK13317 pantothenate kinase; 61.4 52 0.0011 32.2 9.0 92 404-496 116-213 (277)
212 TIGR01796 CM_mono_aroH monofun 61.3 13 0.00028 31.1 3.9 38 67-107 12-49 (117)
213 TIGR00329 gcp_kae1 metallohydr 61.1 25 0.00054 34.9 6.9 75 156-234 1-77 (305)
214 PRK01433 hscA chaperone protei 61.0 11 0.00024 41.2 4.6 24 152-175 192-215 (595)
215 COG0282 ackA Acetate kinase [E 61.0 11 0.00025 38.1 4.3 28 25-52 2-29 (396)
216 PF14639 YqgF: Holliday-juncti 60.7 24 0.00053 31.1 5.9 30 24-54 5-38 (150)
217 PTZ00009 heat shock 70 kDa pro 60.6 8.3 0.00018 42.7 3.7 24 152-175 193-216 (653)
218 PRK14878 UGMP family protein; 60.0 31 0.00067 34.6 7.3 71 28-105 2-73 (323)
219 PRK09604 UGMP family protein; 59.8 38 0.00083 34.1 8.0 77 154-234 2-80 (332)
220 PRK00976 hypothetical protein; 57.5 26 0.00056 35.0 6.1 19 154-172 2-20 (326)
221 PRK12397 propionate kinase; Re 57.0 29 0.00063 35.8 6.5 25 155-179 5-29 (404)
222 COG2183 Tex Transcriptional ac 56.9 29 0.00063 38.5 6.8 65 25-107 331-396 (780)
223 COG1521 Pantothenate kinase ty 56.7 25 0.00054 33.8 5.7 30 155-186 2-31 (251)
224 PRK09605 bifunctional UGMP fam 56.6 32 0.0007 37.1 7.3 76 154-235 2-78 (535)
225 PF07318 DUF1464: Protein of u 56.4 11 0.00024 37.8 3.3 42 157-206 1-42 (343)
226 PRK07058 acetate kinase; Provi 56.0 17 0.00038 37.2 4.7 24 150-173 1-24 (396)
227 PRK05183 hscA chaperone protei 53.1 16 0.00035 40.1 4.4 24 152-175 200-223 (616)
228 TIGR00555 panK_eukar pantothen 53.1 1.1E+02 0.0023 30.1 9.5 92 404-496 121-221 (279)
229 PF03309 Pan_kinase: Type III 53.0 51 0.0011 30.6 7.1 22 27-50 2-23 (206)
230 TIGR03722 arch_KAE1 universal 52.5 38 0.00083 33.9 6.6 73 156-234 1-74 (322)
231 TIGR03723 bact_gcp putative gl 51.8 57 0.0012 32.6 7.6 77 155-235 1-79 (314)
232 PF05035 DGOK: 2-keto-3-deoxy- 51.7 14 0.00031 36.3 3.3 27 30-57 1-27 (287)
233 cd00529 RuvC_resolvase Hollida 51.6 96 0.0021 27.3 8.3 53 26-87 2-57 (154)
234 COG1548 Predicted transcriptio 50.5 26 0.00055 33.6 4.5 30 154-186 4-33 (330)
235 TIGR02350 prok_dnaK chaperone 49.0 14 0.0003 40.6 3.0 25 151-175 181-205 (595)
236 KOG1369|consensus 48.8 53 0.0011 34.6 7.0 59 154-217 87-148 (474)
237 PTZ00009 heat shock 70 kDa pro 47.8 19 0.00041 39.9 3.9 21 152-172 3-23 (653)
238 CHL00094 dnaK heat shock prote 47.2 15 0.00034 40.4 3.0 22 152-173 186-207 (621)
239 PF04312 DUF460: Protein of un 47.1 66 0.0014 27.8 6.1 33 150-184 29-61 (138)
240 PRK00290 dnaK molecular chaper 47.0 15 0.00033 40.5 3.0 22 152-173 184-205 (627)
241 PRK00290 dnaK molecular chaper 46.7 18 0.00038 40.0 3.4 19 154-172 3-21 (627)
242 PTZ00400 DnaK-type molecular c 46.6 16 0.00035 40.6 3.1 25 151-175 224-248 (663)
243 TIGR03281 methan_mark_12 putat 46.3 13 0.00029 36.4 2.1 22 27-49 2-23 (326)
244 PF14239 RRXRR: RRXRR protein 46.3 40 0.00086 30.5 4.9 67 111-181 2-77 (176)
245 TIGR03725 bact_YeaZ universal 46.2 78 0.0017 29.2 7.2 63 155-235 1-63 (202)
246 PRK13411 molecular chaperone D 46.1 18 0.00039 40.1 3.4 24 152-175 185-208 (653)
247 PLN02920 pantothenate kinase 1 46.1 1.7E+02 0.0036 30.2 9.9 94 402-496 184-288 (398)
248 KOG2707|consensus 46.0 40 0.00087 33.8 5.2 82 25-111 33-116 (405)
249 PF00012 HSP70: Hsp70 protein; 45.8 14 0.00031 40.3 2.5 25 152-176 187-211 (602)
250 COG0443 DnaK Molecular chapero 45.8 18 0.00039 39.4 3.2 25 151-175 170-194 (579)
251 COG0145 HyuA N-methylhydantoin 44.8 35 0.00076 37.8 5.2 32 153-185 2-33 (674)
252 COG1214 Inactive homolog of me 44.5 59 0.0013 30.6 6.1 66 154-235 2-67 (220)
253 TIGR02350 prok_dnaK chaperone 44.4 18 0.0004 39.6 3.1 18 155-172 2-19 (595)
254 COG2441 Predicted butyrate kin 44.4 28 0.0006 33.8 3.8 45 156-207 1-45 (374)
255 PRK13410 molecular chaperone D 44.4 29 0.00064 38.5 4.7 23 154-178 3-25 (668)
256 CHL00094 dnaK heat shock prote 44.3 22 0.00048 39.2 3.7 22 154-177 3-24 (621)
257 PTZ00186 heat shock 70 kDa pre 43.9 21 0.00046 39.5 3.5 24 152-175 211-234 (657)
258 PRK13411 molecular chaperone D 43.7 23 0.00051 39.2 3.8 22 154-177 3-24 (653)
259 PRK09585 anmK anhydro-N-acetyl 43.3 37 0.0008 34.6 4.8 78 25-107 3-100 (365)
260 PF00012 HSP70: Hsp70 protein; 43.3 18 0.00039 39.5 2.8 18 155-172 1-18 (602)
261 PRK05183 hscA chaperone protei 43.2 22 0.00047 39.2 3.4 21 152-172 18-38 (616)
262 COG0282 ackA Acetate kinase [E 43.1 68 0.0015 32.7 6.5 26 154-179 2-27 (396)
263 PRK11678 putative chaperone; P 42.9 19 0.00042 37.9 2.8 18 26-43 2-19 (450)
264 PTZ00186 heat shock 70 kDa pre 42.6 25 0.00055 38.9 3.8 19 154-172 28-46 (657)
265 PRK13410 molecular chaperone D 42.4 24 0.00052 39.2 3.6 24 152-175 186-209 (668)
266 PRK13328 pantothenate kinase; 41.9 26 0.00055 33.9 3.3 25 25-51 3-27 (255)
267 PTZ00400 DnaK-type molecular c 41.3 23 0.00051 39.3 3.3 19 154-172 42-60 (663)
268 PRK14878 UGMP family protein; 41.0 79 0.0017 31.7 6.8 72 156-234 1-73 (323)
269 TIGR03281 methan_mark_12 putat 40.8 20 0.00043 35.3 2.3 22 155-177 1-22 (326)
270 COG4012 Uncharacterized protei 40.7 77 0.0017 30.6 6.0 46 26-82 229-274 (342)
271 PRK11678 putative chaperone; P 40.1 25 0.00054 37.1 3.1 17 155-171 2-18 (450)
272 PLN03184 chloroplast Hsp70; Pr 40.0 25 0.00053 39.2 3.2 25 151-175 222-246 (673)
273 COG0443 DnaK Molecular chapero 39.3 33 0.00071 37.5 4.0 21 153-173 5-25 (579)
274 PF14639 YqgF: Holliday-juncti 39.1 74 0.0016 28.0 5.5 28 155-183 7-38 (150)
275 PRK13322 pantothenate kinase; 38.5 26 0.00057 33.6 2.8 24 26-50 2-25 (246)
276 PRK07157 acetate kinase; Provi 38.1 44 0.00096 34.4 4.4 25 155-179 5-29 (400)
277 PF01548 DEDD_Tnp_IS110: Trans 38.1 70 0.0015 27.4 5.2 29 27-56 2-30 (144)
278 COG0533 QRI7 Metal-dependent p 37.8 1.2E+02 0.0025 30.6 7.1 76 154-234 2-79 (342)
279 TIGR01991 HscA Fe-S protein as 37.1 23 0.00049 38.9 2.3 24 152-175 180-203 (599)
280 PRK00109 Holliday junction res 35.6 2.9E+02 0.0063 23.8 8.8 22 155-177 6-27 (138)
281 PF03309 Pan_kinase: Type III 35.5 32 0.0007 31.9 2.8 23 155-179 1-23 (206)
282 PRK12379 propionate/acetate ki 35.4 59 0.0013 33.5 4.8 28 152-179 4-31 (396)
283 cd00529 RuvC_resolvase Hollida 35.2 1.9E+02 0.0042 25.3 7.6 21 155-175 2-22 (154)
284 PF02075 RuvC: Crossover junct 35.1 1.5E+02 0.0032 26.0 6.8 55 155-217 1-57 (149)
285 PF05035 DGOK: 2-keto-3-deoxy- 34.0 44 0.00096 32.9 3.6 28 159-187 1-28 (287)
286 TIGR01991 HscA Fe-S protein as 33.7 30 0.00065 38.0 2.6 18 155-172 1-18 (599)
287 PF03652 UPF0081: Uncharacteri 33.5 66 0.0014 27.7 4.2 22 25-47 2-23 (135)
288 TIGR01865 cas_Csn1 CRISPR-asso 32.6 33 0.00072 39.0 2.8 21 153-173 1-21 (805)
289 COG2377 Predicted molecular ch 32.5 37 0.00081 34.3 2.8 81 23-107 4-102 (371)
290 COG4401 AroH Chorismate mutase 32.0 94 0.002 25.6 4.4 37 68-107 15-51 (125)
291 PRK00109 Holliday junction res 31.9 1.5E+02 0.0033 25.6 6.2 22 26-48 6-27 (138)
292 TIGR01865 cas_Csn1 CRISPR-asso 31.6 36 0.00077 38.8 2.8 22 25-47 2-23 (805)
293 PF06723 MreB_Mbl: MreB/Mbl pr 31.4 44 0.00096 33.5 3.2 26 156-183 4-29 (326)
294 PRK01433 hscA chaperone protei 31.3 45 0.00098 36.5 3.5 19 153-171 19-37 (595)
295 PLN03184 chloroplast Hsp70; Pr 31.1 44 0.00095 37.2 3.4 19 154-172 40-58 (673)
296 PF13756 Stimulus_sens_1: Stim 31.0 1.2E+02 0.0026 25.1 5.2 24 32-56 15-38 (112)
297 COG2433 Uncharacterized conser 31.0 6.5E+02 0.014 27.5 11.6 112 62-183 149-272 (652)
298 TIGR00904 mreB cell shape dete 30.7 35 0.00077 34.2 2.4 21 153-173 150-170 (333)
299 KOG1386|consensus 30.5 1.9E+02 0.0042 30.5 7.5 66 24-89 9-79 (501)
300 PF01548 DEDD_Tnp_IS110: Trans 30.2 83 0.0018 26.9 4.4 29 155-184 1-29 (144)
301 TIGR00016 ackA acetate kinase. 30.2 77 0.0017 32.8 4.7 24 155-178 6-30 (404)
302 TIGR00904 mreB cell shape dete 29.9 39 0.00084 33.9 2.5 22 156-179 5-26 (333)
303 PF02541 Ppx-GppA: Ppx/GppA ph 29.5 66 0.0014 31.4 4.0 59 24-85 113-173 (285)
304 COG1647 Esterase/lipase [Gener 29.4 80 0.0017 29.8 4.2 34 65-104 60-93 (243)
305 PF08735 DUF1786: Putative pyr 29.4 1.8E+02 0.004 28.0 6.7 66 153-241 167-232 (254)
306 PF07736 CM_1: Chorismate muta 28.8 93 0.002 26.1 4.1 36 197-235 13-48 (118)
307 PRK13929 rod-share determining 28.8 45 0.00097 33.6 2.8 22 155-178 6-27 (335)
308 PHA02754 hypothetical protein; 28.5 1.4E+02 0.003 21.5 4.2 39 75-115 14-52 (67)
309 PRK13322 pantothenate kinase; 28.0 47 0.001 31.9 2.6 23 155-178 2-24 (246)
310 PF04848 Pox_A22: Poxvirus A22 27.8 1.2E+02 0.0026 26.5 4.8 25 25-50 2-26 (143)
311 PF07066 DUF3882: Lactococcus 27.8 3.9E+02 0.0085 23.4 7.7 52 26-87 4-60 (159)
312 PLN02902 pantothenate kinase 27.6 3.4E+02 0.0074 31.0 9.3 94 402-496 233-337 (876)
313 PRK13325 bifunctional biotin-- 27.6 82 0.0018 34.5 4.6 23 25-50 340-362 (592)
314 PRK00180 acetate kinase A/prop 27.5 80 0.0017 32.7 4.3 28 26-53 3-30 (402)
315 PRK13928 rod shape-determining 27.5 45 0.00097 33.5 2.5 24 154-179 148-171 (336)
316 PRK00039 ruvC Holliday junctio 27.1 3E+02 0.0064 24.6 7.4 22 154-176 3-24 (164)
317 PRK13928 rod shape-determining 26.9 43 0.00094 33.6 2.3 22 156-179 6-27 (336)
318 KOG1385|consensus 26.7 1.2E+02 0.0026 31.3 5.2 67 151-217 65-134 (453)
319 PRK08557 hypothetical protein; 26.6 46 0.00099 34.7 2.4 60 250-312 316-377 (417)
320 COG4012 Uncharacterized protei 24.9 2.2E+02 0.0048 27.6 6.3 67 155-244 229-295 (342)
321 PF03702 UPF0075: Uncharacteri 24.9 2E+02 0.0044 29.3 6.6 77 154-236 2-97 (364)
322 COG5146 PanK Pantothenate kina 24.4 1.2E+02 0.0025 28.9 4.3 90 402-494 164-266 (342)
323 PRK13929 rod-share determining 24.4 73 0.0016 32.0 3.4 20 153-172 150-169 (335)
324 KOG2708|consensus 24.4 3.2E+02 0.007 25.9 7.1 74 26-105 4-78 (336)
325 PRK13795 hypothetical protein; 24.0 50 0.0011 36.5 2.2 32 281-312 408-439 (636)
326 PRK09585 anmK anhydro-N-acetyl 23.9 1E+02 0.0022 31.5 4.3 78 154-236 3-100 (365)
327 cd02185 AroH Chorismate mutase 23.8 1.1E+02 0.0025 25.5 3.7 37 196-235 12-48 (117)
328 TIGR00228 ruvC crossover junct 23.4 5.2E+02 0.011 22.9 8.1 55 26-87 1-55 (156)
329 PF08735 DUF1786: Putative pyr 23.2 2.1E+02 0.0045 27.6 5.9 65 24-112 168-232 (254)
330 TIGR01796 CM_mono_aroH monofun 22.8 1.2E+02 0.0027 25.4 3.7 37 196-235 12-48 (117)
331 PRK13328 pantothenate kinase; 22.6 84 0.0018 30.3 3.2 23 155-178 3-25 (255)
332 PRK13329 pantothenate kinase; 22.6 63 0.0014 31.1 2.4 17 25-42 3-19 (249)
333 cd04697 Nudix_Hydrolase_38 Mem 22.5 2.1E+02 0.0046 23.7 5.4 56 36-99 3-64 (126)
334 PF03702 UPF0075: Uncharacteri 22.5 1.4E+02 0.0031 30.5 5.0 77 25-107 2-97 (364)
335 smart00265 BH4 BH4 Bcl-2 homol 22.4 52 0.0011 19.9 1.1 11 322-332 10-20 (27)
336 PF03652 UPF0081: Uncharacteri 21.9 1E+02 0.0022 26.6 3.3 20 154-173 2-21 (135)
337 PF01968 Hydantoinase_A: Hydan 21.5 91 0.002 30.7 3.3 23 26-50 79-101 (290)
338 PF12864 DUF3822: Protein of u 21.2 3E+02 0.0065 26.3 6.8 80 23-115 17-96 (253)
339 PF08841 DDR: Diol dehydratase 21.1 1.3E+02 0.0028 29.5 4.0 29 23-53 134-162 (332)
340 COG2012 RPB5 DNA-directed RNA 20.8 46 0.001 25.6 0.8 24 357-380 27-50 (80)
341 KOG2707|consensus 20.1 1.6E+02 0.0036 29.7 4.6 76 155-234 34-111 (405)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=1.2e-65 Score=507.88 Aligned_cols=340 Identities=50% Similarity=0.853 Sum_probs=311.7
Q ss_pred CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
++|+++||.||||+|+++||.+ |++++..+.+++.++|++||+||||.+||.++..+++.++.+ .++++.+|.+||
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~-g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIG 79 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDED-GNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIG 79 (499)
T ss_pred ccEEEEEecCCcceeEEEECCC-CCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEE
Confidence 5799999999999999999985 999999999999999999999999999999999999999876 588999999999
Q ss_pred EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHh
Q psy9709 232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI 311 (500)
Q Consensus 232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~ 311 (500)
|++|.+|+++||+++|+|++|+|.|+|.|..+.++++.+... .+.+.+.||..+.|+|+..|+.|+.+|.|...+++
T Consensus 80 ITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~---~~~i~~kTGL~~dpYFSatKi~WiLdnv~g~r~~a 156 (499)
T COG0554 80 ITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGY---EERIREKTGLVLDPYFSATKIKWILDNVPGARERA 156 (499)
T ss_pred eeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcch---hhhhhhhcCCccCCCccchhhhHHHhhChhhhhHh
Confidence 999999999999999999999999999999999999998722 36788899999999999999999999999999999
Q ss_pred hcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec------
Q psy9709 312 KENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS------ 385 (500)
Q Consensus 312 ~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~------ 385 (500)
.++...|.++..||.|+|||....+||+||||+|+|||+++.+||+++|+.||||.++||+|+++.++.|.+..
T Consensus 157 e~Gel~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip~~~LPev~~ss~~~G~t~~~~~g~~ 236 (499)
T COG0554 157 EKGELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFLGAE 236 (499)
T ss_pred hcCCeEEecchhhheeeccCCceeccccchhHHHhcccccccCCCHHHHHHhCCChHhCccccccccccccccccccCCc
Confidence 88889999999999999996336899999999999999999999999999999999999999999988887211
Q ss_pred ----------------------------------------------CCcceEEEEEeecCCCCceeeechhhhchhHHHH
Q psy9709 386 ----------------------------------------------NNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVK 419 (500)
Q Consensus 386 ----------------------------------------------~~G~~~~~~~~~~~~~p~~~~~~g~~~~~G~~~~ 419 (500)
..||++|+++.++. .-.|.+||++..+|.+++
T Consensus 237 vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~g--k~~YALEGsif~aGaavq 314 (499)
T COG0554 237 VPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDG--KVTYALEGSIFVAGAAVQ 314 (499)
T ss_pred eeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCC--eEEEEEecceeehhhHHH
Confidence 12344555555443 247999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy9709 420 WLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499 (500)
Q Consensus 420 w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~ 499 (500)
|+++.++...+..+.+.+|.+++.++|++|.|.|.|.++||||+++||.|+||+..++++|++||++|+|||+.+.+++.
T Consensus 315 WLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi~RA~LEsiayQ~~dv~~a 394 (499)
T COG0554 315 WLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLEA 394 (499)
T ss_pred HHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988778888899999988889999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy9709 500 Y 500 (500)
Q Consensus 500 ~ 500 (500)
|
T Consensus 395 M 395 (499)
T COG0554 395 M 395 (499)
T ss_pred H
Confidence 7
No 2
>PLN02295 glycerol kinase
Probab=100.00 E-value=5.7e-62 Score=517.32 Aligned_cols=341 Identities=51% Similarity=0.912 Sum_probs=293.5
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC----eeE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD----IVT 229 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~----I~~ 229 (500)
|+||||+|||++|+++||.+ |++++..+.+++..++++||.||||++||++++++++++++++ +.++++ |.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~~-G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~---~~~~~~i~~~i~a 76 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRD-ARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKA---AAKGHNVDSGLKA 76 (512)
T ss_pred CEEEEecCCCceEEEEECCC-CCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHc---CCCccccccceEE
Confidence 57999999999999999975 9999999999998889999999999999999999999999863 445555 899
Q ss_pred EEEcCCCceeEEEe-CCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHH
Q psy9709 230 LGITNQRETTVVWD-LNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVR 308 (500)
Q Consensus 230 I~vs~~~~~~v~~d-~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~ 308 (500)
|++|+|++++++|| + +|+|++|+|+|+|.|+.++++++.+..+. ..+.+++.||.++++.++++||+||++|+||+|
T Consensus 77 Ig~s~q~~~~v~~dd~-~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~ 154 (512)
T PLN02295 77 IGITNQRETTVAWSKS-TGRPLYNAIVWMDSRTSSICRRLEKELSG-GRKHFVETCGLPISTYFSATKLLWLLENVDAVK 154 (512)
T ss_pred EEEecCcceEEEEECC-CCCCcccceeccccchHHHHHHHHhhccc-hhHHHHHhhCCcCCcccHHHHHHHHHhcCHHHH
Confidence 99999999999995 6 79999999999999999999999876531 124566899999999999999999999999999
Q ss_pred HHhhcccccccchhHHHHHhhcCCC---eeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec
Q psy9709 309 RAIKENRCLFGTVDTWLVWNLTGRT---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385 (500)
Q Consensus 309 ~~~~~~~~~~~~~~dyi~~~LTg~g---~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~ 385 (500)
++++.+..+|++++|||.|+|||.. ++++|+|+|+++++||+++++|++++++.+||+.++||+++++++++|++..
T Consensus 155 ~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~ell~~~gi~~~~lP~l~~~~~~~G~v~~ 234 (512)
T PLN02295 155 EAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAK 234 (512)
T ss_pred HhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHHHHHcCCCHHHCCCcccCccceecccc
Confidence 8875455689999999999999310 7899999999999999999999999999999999999999999999997422
Q ss_pred C-------------------------Ccce-----E--EEEEee-------------------cCCCCceeeechhhhch
Q psy9709 386 N-------------------------NGLV-----T--TVAYQF-------------------GPDATPIYALEGSIAVA 414 (500)
Q Consensus 386 ~-------------------------~G~~-----~--~~~~~~-------------------~~~~p~~~~~~g~~~~~ 414 (500)
. .|.. | .+.... +...|+.|.++++++++
T Consensus 235 ~~a~~g~pV~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 314 (512)
T PLN02295 235 GWPLAGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSVAIA 314 (512)
T ss_pred ccccCCCcEEEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCCCceEEEEEEecCCCCceEEEechhhhh
Confidence 1 0100 0 000000 01116789999999999
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q psy9709 415 GAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTR 494 (500)
Q Consensus 415 G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~ 494 (500)
|.+++|+++.++...+++++++++++.+++++++|+|||.|+|+|+||+++||+|+||+..|+++||+||++|||||.+|
T Consensus 315 G~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~r 394 (512)
T PLN02295 315 GAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVK 394 (512)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999988643457777888877788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q psy9709 495 DILELY 500 (500)
Q Consensus 495 ~~~~~~ 500 (500)
+++|.|
T Consensus 395 ~~l~~l 400 (512)
T PLN02295 395 DVLDAM 400 (512)
T ss_pred HHHHHH
Confidence 999864
No 3
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=3.9e-61 Score=510.28 Aligned_cols=339 Identities=53% Similarity=0.901 Sum_probs=294.0
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCC--CeeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD--DIVTLG 231 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~--~I~~I~ 231 (500)
+++|||+|||++|+++||.+ |++++..+++++...+.+||.|||+++||++++++++++++++ +.... +|.+|+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~-G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~---~~~~~~~~I~aIg 78 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEK-GNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKL---REKGPSFKIKAIG 78 (504)
T ss_pred EEEEEecCCCceEEEEECCC-CCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHc---CCCCccCceEEEE
Confidence 89999999999999999975 9999999999988888899999999999999999999998764 33344 799999
Q ss_pred EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHh
Q psy9709 232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI 311 (500)
Q Consensus 232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~ 311 (500)
+|+|++++++||+++|+||+|+++|+|.|+.++++++.+..+. .+.+++.||.++++.++++||+||++|+|++|+++
T Consensus 79 is~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~--~~~~~~~tG~~~~~~~~~~kl~wl~~~~P~~~~~~ 156 (504)
T PTZ00294 79 ITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGG--SNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAV 156 (504)
T ss_pred eecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhcCc--chHHHHhhCCcCCccchHHHHHHHHhcCHHHHHhh
Confidence 9999999999987459999999999999999999999887642 24566899999999999999999999999999988
Q ss_pred hcccccccchhHHHHHhhcCCC--eeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC---
Q psy9709 312 KENRCLFGTVDTWLVWNLTGRT--CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN--- 386 (500)
Q Consensus 312 ~~~~~~~~~~~dyi~~~LTg~g--~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~--- 386 (500)
+++..++++++|||.|+|| | ++++|+++|++|++||+++++|++++++.+||+.++||+|+++++++|.+...
T Consensus 157 ~~~~~~~~~~~dyl~~~LT--G~~~~~~d~s~As~tgl~D~~~~~W~~~ll~~~gi~~~~LP~v~~~~~~~G~l~~~~~~ 234 (504)
T PTZ00294 157 KEGTLLFGTIDTWLIWNLT--GGKSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVP 234 (504)
T ss_pred hcCCeEEEcHHHHHHHHhc--CCceEEEEhhhhHHhhccCcccCccCHHHHHHhCCCHHHCCCccCCccccCccchhhcC
Confidence 6224468899999999999 7 89999999999999999999999999999999999999999999999974210
Q ss_pred -------------------------Cc-------ceEEEEEeec-------------------CCCCceeeechhhhchh
Q psy9709 387 -------------------------NG-------LVTTVAYQFG-------------------PDATPIYALEGSIAVAG 415 (500)
Q Consensus 387 -------------------------~G-------~~~~~~~~~~-------------------~~~p~~~~~~g~~~~~G 415 (500)
.| ....+....+ ...|+.|.++++++++|
T Consensus 235 ~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (504)
T PTZ00294 235 LLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSIAVAG 314 (504)
T ss_pred CCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechhhhhH
Confidence 01 0001011010 01133788899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9709 416 AAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRD 495 (500)
Q Consensus 416 ~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~ 495 (500)
.+++|+++.++...+++.+++++++++++++++|+|||.|+|+|++|+++||+|+||+.+|+++||+||++|||||.+|+
T Consensus 315 ~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~i~rAvlEgia~~~r~ 394 (504)
T PTZ00294 315 AGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTND 394 (504)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999886545677888888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q psy9709 496 ILELY 500 (500)
Q Consensus 496 ~~~~~ 500 (500)
++|.|
T Consensus 395 ~~~~l 399 (504)
T PTZ00294 395 VIESM 399 (504)
T ss_pred HHHHH
Confidence 99864
No 4
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=2.8e-61 Score=510.98 Aligned_cols=344 Identities=47% Similarity=0.791 Sum_probs=296.9
Q ss_pred cccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709 149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 228 (500)
Q Consensus 149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~ 228 (500)
|+|++|+||||+|||++|+++||.+ |++++..+.+++...+.+||.|||+++||+++++++++++++ .+.++++|.
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~~-g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~ 76 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDHD-GNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQIA 76 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECCC-CCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHee
Confidence 4566799999999999999999975 999999999998888899999999999999999999999875 456677899
Q ss_pred EEEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHH
Q psy9709 229 TLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVR 308 (500)
Q Consensus 229 ~I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~ 308 (500)
+||+++|++++++||+++|+|++|+|+|+|.|+.++++++.+... .+++++.+|.++++.++++||+||++|+||+|
T Consensus 77 ~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~ 153 (498)
T PRK00047 77 AIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRDGY---EDYIREKTGLVIDPYFSGTKIKWILDNVEGAR 153 (498)
T ss_pred EEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhccc---hhhHHHhhCCCCCccchHHHHHHHHHcCHhHH
Confidence 999999999999999635999999999999999999999987622 24588999999999999999999999999999
Q ss_pred HHhhcccccccchhHHHHHhhcCCCe-eeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecCC
Q psy9709 309 RAIKENRCLFGTVDTWLVWNLTGRTC-HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNN 387 (500)
Q Consensus 309 ~~~~~~~~~~~~~~dyi~~~LTg~g~-~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~~ 387 (500)
+++.++..+|++++|||.|+||| |+ +++|+|+|+++++||+++++|++++++.+||+.++||+++++++++|.+....
T Consensus 154 ~~~~~~~~~~~~~~dyl~~~LTG-~~~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~ 232 (498)
T PRK00047 154 ERAEKGELLFGTIDTWLVWKLTG-GKVHVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYG 232 (498)
T ss_pred HHHhcCCeEEeChHHhHhhhhcC-CCeeEeechHHhhhhccccccCccCHHHHHhcCCCHHHCCCccCCccccccccccc
Confidence 99874445688999999999995 34 89999999999999999999999999999999999999999999999643211
Q ss_pred ----------------------c------------ceEEEEEeec-C--------------CCCc--eeeechhhhchhH
Q psy9709 388 ----------------------G------------LVTTVAYQFG-P--------------DATP--IYALEGSIAVAGA 416 (500)
Q Consensus 388 ----------------------G------------~~~~~~~~~~-~--------------~~p~--~~~~~g~~~~~G~ 416 (500)
| ....+....+ . ..++ .|..+++++++|.
T Consensus 233 ~l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~ 312 (498)
T PRK00047 233 FFGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVAGS 312 (498)
T ss_pred cCCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhHHH
Confidence 1 0001011110 0 1133 5888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9709 417 AVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDI 496 (500)
Q Consensus 417 ~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~ 496 (500)
+++|+++.++....+++++++++..+++++++|+|||.|+|+|+||+++||+|+||+.+|+++||+||++|||||.+|++
T Consensus 313 ~l~W~~~~~~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~r~~ 392 (498)
T PRK00047 313 AIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDV 392 (498)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998864345667788887778888999999999999999999999999999999999999999999999999999
Q ss_pred HHhC
Q psy9709 497 LELY 500 (500)
Q Consensus 497 ~~~~ 500 (500)
+|.|
T Consensus 393 ~e~l 396 (498)
T PRK00047 393 LDAM 396 (498)
T ss_pred HHHH
Confidence 9864
No 5
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=4.8e-60 Score=499.89 Aligned_cols=328 Identities=24% Similarity=0.364 Sum_probs=288.8
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 233 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs 233 (500)
++||||+|||++|+++||.+ |++++..+.+++...+.+|+.|||+++||+++++++++++++. ..++|.+|++|
T Consensus 1 ~~lgID~GTts~Ka~l~d~~-G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~-----~~~~I~aI~is 74 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQ-GEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH-----SLQDVKALGIA 74 (484)
T ss_pred CEEEEEecccceEEEEEcCC-CCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC-----CccceeEEEEe
Confidence 47899999999999999975 9999999999988788899999999999999999999998752 34679999999
Q ss_pred CCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhc
Q psy9709 234 NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKE 313 (500)
Q Consensus 234 ~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~ 313 (500)
+|+++++++|+ +|+|++|+++|+|.|+.++++++.+..+ .+++.+|.++++.++++||+|+++|+||+|++++
T Consensus 75 ~q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~~-----~~~~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~- 147 (484)
T PRK15027 75 GQMHGATLLDA-QQRVLRPAILWNDGRCAQECALLEARVP-----QSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQID- 147 (484)
T ss_pred cCCCceEEECC-CcCCccccccccCccHHHHHHHHHHhcc-----hhHHHhCCCcCccchHHHHHHHHHhCHHHHHHhh-
Confidence 99999999999 7999999999999999999999987654 2567899999999999999999999999999997
Q ss_pred ccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----Ccc
Q psy9709 314 NRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----NGL 389 (500)
Q Consensus 314 ~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----~G~ 389 (500)
+|++++|||.|+|| |++++|+++|+++++||+++++|++++++.+||+.++||+++++++++|++... .|+
T Consensus 148 ---~~~~~~dyl~~~LT--G~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~~~lP~v~~~~~~~G~l~~~~a~~~GL 222 (484)
T PRK15027 148 ---KVLLPKDYLRLRMT--GEFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGALLPEVAKAWGM 222 (484)
T ss_pred ---hhcChHHHHHhhhc--CCccccHHHhhcccccccccCCCcHHHHHHhCCCHHHCCCCCCCccccccccHHHHHHhCC
Confidence 89999999999999 789999999999999999999999999999999999999999999999984210 010
Q ss_pred ---------------------------------eEEEEEe--------------ecCCCCceeeechhhhchhHHHHHHH
Q psy9709 390 ---------------------------------VTTVAYQ--------------FGPDATPIYALEGSIAVAGAAVKWLR 422 (500)
Q Consensus 390 ---------------------------------~~~~~~~--------------~~~~~p~~~~~~g~~~~~G~~~~w~~ 422 (500)
...+... ..+..|+.|.+++.+.++|.+++|++
T Consensus 223 ~~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~ 302 (484)
T PRK15027 223 ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLMSVMLSAASCLDWAA 302 (484)
T ss_pred CCCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEecCCcccCchhceeecceecCCceEEEEEehhhHHHHHHHH
Confidence 0000000 01123678888899999999999999
Q ss_pred HHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 423 DNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
+.++. ..++++.++++++| ++++++|+|||.|+|+|++|+++||+|+||+.+|+++||+||++|||||.+|+++|.|
T Consensus 303 ~~~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l 380 (484)
T PRK15027 303 KLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV 380 (484)
T ss_pred HHhCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98864 34677766777766 8899999999999999999999999999999999999999999999999999999864
No 6
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=2e-59 Score=497.64 Aligned_cols=331 Identities=23% Similarity=0.375 Sum_probs=289.7
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 233 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs 233 (500)
|+||||+|||++|+++||.+ |++++..+.+++...+.+|+.+||+++||+.+++++++++++. +.+ ++|.+||++
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~---~~~-~~I~~Igis 75 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEEN-GKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL---EDE-DEILFVSFS 75 (505)
T ss_pred CEEEEeccccceEEEEEcCC-CCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC---CCc-CceEEEEEe
Confidence 57999999999999999974 9999999998887788899999999999999999999998752 333 679999999
Q ss_pred CCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhc
Q psy9709 234 NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKE 313 (500)
Q Consensus 234 ~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~ 313 (500)
+|++++++||+ +|+|++|+++|+|.|+.++++++.+.++. +++++.+|.++++.++++||+|+++|+|++|++++
T Consensus 76 ~~~~~~v~~D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~- 150 (505)
T TIGR01314 76 TQMHSLIAFDE-NWQPLTRLITWADNRAVKYAEQIKESKNG---FDIYRRTGTPIHPMAPLSKIIWLEAEHPDIYQKAA- 150 (505)
T ss_pred cccceeEEECC-CcCCcccceeccccchHHHHHHHHhhcCH---HHHHHHHCCCCCccchHHHHHHHHHhChhHHHhhc-
Confidence 99999999999 79999999999999999999999887653 56889999999999999999999999999999987
Q ss_pred ccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----CCcc
Q psy9709 314 NRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----NNGL 389 (500)
Q Consensus 314 ~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~~G~ 389 (500)
+|++++|||.|+|| |++++|+|+|+++++||+++++|++++++.+||++++||+|+++++++|++.. ..|+
T Consensus 151 ---~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~l~~~g~~iG~l~~~~a~~~GL 225 (505)
T TIGR01314 151 ---KYLEIKGYIFQRLF--GTYKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMGI 225 (505)
T ss_pred ---EEECHHHHHHHHHc--CCceeEhhhhhhhcceeCCCCCCCHHHHHhcCCCHHHCCCCcCcccccCCcCHHHHHHhCC
Confidence 89999999999999 78999999999999999999999999999999999999999999999997432 1111
Q ss_pred e------------------------EEEEEeecC-----------------------CCCceeeechhhhchhHHHHHHH
Q psy9709 390 V------------------------TTVAYQFGP-----------------------DATPIYALEGSIAVAGAAVKWLR 422 (500)
Q Consensus 390 ~------------------------~~~~~~~~~-----------------------~~p~~~~~~g~~~~~G~~~~w~~ 422 (500)
. .......|+ ..++.|..+++++++|.+++||+
T Consensus 226 ~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~ 305 (505)
T TIGR01314 226 QSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTKEHWVIGGPVNNGGDVLRWAR 305 (505)
T ss_pred CCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeeccCcCccCCCCceEEEEecCCcEEEEeeecchHhHHHHHH
Confidence 0 000000110 01246788888999999999999
Q ss_pred HHcCCC----------CCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHH
Q psy9709 423 DNLNLM----------DNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICF 491 (500)
Q Consensus 423 ~~~~~~----------~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~ 491 (500)
+.+... +.|+.++++++++| ++++++|+|||.|+|+|++|+++||+|+||+.+|+++||+||++||+||
T Consensus 306 ~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~Gl~~~~~~~~l~rAvlEgia~ 385 (505)
T TIGR01314 306 DEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIY 385 (505)
T ss_pred HHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccCCCCCCCCCccEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 877421 34788899888877 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy9709 492 QTRDILEL 499 (500)
Q Consensus 492 ~~~~~~~~ 499 (500)
.++++++.
T Consensus 386 ~~~~~~~~ 393 (505)
T TIGR01314 386 NLYTVALA 393 (505)
T ss_pred HHHHHHHH
Confidence 99988764
No 7
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=1.1e-58 Score=490.58 Aligned_cols=339 Identities=53% Similarity=0.884 Sum_probs=295.6
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
+|++|||+|||++|+++||.+ |+++...+.+++...+.+||.+||+++||+.+++++++++++ .++++++|.+||+
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~~-g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~aIgi 76 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDKD-GNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDDIAAIGI 76 (493)
T ss_pred CeEEEEecCCCceEEEEECCC-CCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhheeEEEE
Confidence 478999999999999999975 999999999998888899999999999999999999999876 4566778999999
Q ss_pred cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709 233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK 312 (500)
Q Consensus 233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 312 (500)
++|++++++||+++|+|++|+++|+|.|+.++++++.+.++. +.+++.+|.++++.++++||+|+++|+||+|++++
T Consensus 77 s~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~wlk~~~Pe~~~~~~ 153 (493)
T TIGR01311 77 TNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYG---EFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAE 153 (493)
T ss_pred ecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhcch---HHHHHHhCCcCCccchHHHHHHHHhcCHHHHHHhh
Confidence 999999999997349999999999999999999999887653 57889999999999999999999999999999886
Q ss_pred cccccccchhHHHHHhhcCCC--eeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----
Q psy9709 313 ENRCLFGTVDTWLVWNLTGRT--CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN---- 386 (500)
Q Consensus 313 ~~~~~~~~~~dyi~~~LTg~g--~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~---- 386 (500)
+++.+|++++|||.|+|| | +.++|+++|+++++||+++++|++++++.+|+++++||+|+++++++|.+...
T Consensus 154 ~~~~~~~~~~dyl~~~Lt--G~~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~~~~lP~l~~~g~~~G~v~~~~l~~ 231 (493)
T TIGR01311 154 RGELLFGTIDTWLIWNLT--GGKVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGA 231 (493)
T ss_pred cCCeEEECHhHhhhhhcc--CCceEEeccchhhhhhcccccccccCHHHHHHcCCCHHHCCCccCCccceecccccccCC
Confidence 333468899999999999 7 89999999999999999999999999999999999999999999999974321
Q ss_pred -----------------Ccc-----e-----E--EEEEeecC---------------CCCc---eeeechhhhchhHHHH
Q psy9709 387 -----------------NGL-----V-----T--TVAYQFGP---------------DATP---IYALEGSIAVAGAAVK 419 (500)
Q Consensus 387 -----------------~G~-----~-----~--~~~~~~~~---------------~~p~---~~~~~g~~~~~G~~~~ 419 (500)
.|. . + .+....+. ..++ .|..++++.++|.+++
T Consensus 232 g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~ 311 (493)
T TIGR01311 232 EIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSVFVAGAAVQ 311 (493)
T ss_pred CceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeehhhhHHHHH
Confidence 010 0 0 00111110 1122 3778888999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy9709 420 WLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499 (500)
Q Consensus 420 w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~ 499 (500)
|+++.++....++.+++++++++++++++|+|||.|+|+|++|+++||+|+|++.+|+++||+||++|||||.+|++++.
T Consensus 312 W~~~~~~~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~ 391 (493)
T TIGR01311 312 WLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLEA 391 (493)
T ss_pred HHHHHhCCCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999875456778888887778888999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q psy9709 500 Y 500 (500)
Q Consensus 500 ~ 500 (500)
|
T Consensus 392 l 392 (493)
T TIGR01311 392 M 392 (493)
T ss_pred H
Confidence 5
No 8
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-57 Score=478.44 Aligned_cols=338 Identities=28% Similarity=0.435 Sum_probs=292.6
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 229 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~ 229 (500)
+++.++||||+|||++|+++||.+.|++++..+..++..++++||.|||+++||++++++++++.++ ..++..+|.+
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~I~a 77 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDAIAA 77 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCCCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhhceE
Confidence 4677999999999999999999854899999999999888999999999999999999999999986 3467789999
Q ss_pred EEEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHH
Q psy9709 230 LGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRR 309 (500)
Q Consensus 230 I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~ 309 (500)
|++++|+|+++++|+ +|+||+|+|+|+|.|+.++++++.+..+. ++.+..+|.++.+.++++||+|+++|+||+|+
T Consensus 78 I~is~~~~g~vllD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~~~---~~~~~~t~~~~~~~~t~~kL~Wl~~~~P~~~~ 153 (502)
T COG1070 78 IGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEERLGG---EALYARTGLQAMPGFTAPKLLWLKENEPDLFA 153 (502)
T ss_pred EEEeccccceEEECC-CCCCccccceecchhhHHHHHHHHhhccc---hhhhhhcCCCcCccccHHHHHHHHhcCcHHHH
Confidence 999999999999999 69999999999999999999999998774 56677799999999999999999999999999
Q ss_pred HhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCC-CCCCCcccCCcccceeec---
Q psy9709 310 AIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP-TILPEIRSSSEIYGKVHS--- 385 (500)
Q Consensus 310 ~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~-~~lP~i~~~~~~~G~~~~--- 385 (500)
|++ +|++++|||.|+|| |++++|+|+|++|++||+++++|+.++++.+|+++ ++||+++++++++|.+..
T Consensus 154 k~~----~il~~~dyl~~rLT--G~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~~~~~lp~vv~~g~~~G~l~~e~A 227 (502)
T COG1070 154 KAA----KILLIKDYLRYRLT--GEFATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAA 227 (502)
T ss_pred hhh----heechHHHHHHHHh--CCcccccccccccccccccccccCHHHHHHcCCChHHhCCCccCccceeccccHHHH
Confidence 998 89999999999999 88999999999999999999999999999999995 999999999999997431
Q ss_pred -CCcc----------------------------eE----EEEEe--e----c----------CCCCceeeechhhhchhH
Q psy9709 386 -NNGL----------------------------VT----TVAYQ--F----G----------PDATPIYALEGSIAVAGA 416 (500)
Q Consensus 386 -~~G~----------------------------~~----~~~~~--~----~----------~~~p~~~~~~g~~~~~G~ 416 (500)
..|+ .. +.... . . ...|+.|...+..+++|.
T Consensus 228 ~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (502)
T COG1070 228 EELGLPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLPGWFIVMGANNTGGW 307 (502)
T ss_pred HHhCCCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeeccccccCCccceeeecccCCCeEEEEEEecccHH
Confidence 1111 00 00000 0 0 012456777888899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHh--cC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHH
Q psy9709 417 AVKWLRDNLNLMDNVRETESLAEK--VM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQT 493 (500)
Q Consensus 417 ~~~w~~~~~~~~~~~~~l~~~~~~--~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~ 493 (500)
+++|+++.+.....+.++...+.. .+ ++.+++|.|||.|||.|++++..||.|+|+...|+++|++||++||+||.+
T Consensus 308 ~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~~r~~~~g~~~~~~~~~l~ravlEgva~~l 387 (502)
T COG1070 308 LLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPAARGGFVGLTLPHTRAHLARAVLEGVAFAL 387 (502)
T ss_pred HHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCccceeEEEccccccCHHHHHHHHHHHHHHHH
Confidence 999999999764344443333322 23 778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q psy9709 494 RDILELY 500 (500)
Q Consensus 494 ~~~~~~~ 500 (500)
+..++.|
T Consensus 388 ~~~~~~l 394 (502)
T COG1070 388 ADGLEAL 394 (502)
T ss_pred HHHHHHH
Confidence 9988864
No 9
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=6.2e-57 Score=483.20 Aligned_cols=339 Identities=19% Similarity=0.227 Sum_probs=287.9
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccc------cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI------SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 224 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~------~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~ 224 (500)
|++|+||||+||||+|+++||.++|+++...+.+++.. .+++||.||||++||+++++++++++++ .++.+
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~ 77 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDP 77 (548)
T ss_pred CCcEEEEEecCCCceEEEEEECCCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCCh
Confidence 34689999999999999999952499999998888743 4889999999999999999999999876 35566
Q ss_pred CCeeEEEEcCCCceeEEEeCCCCcccc-----------cceeeccCCCHHHHHHHHhhCCCCccchhhcc-cCCCCchhc
Q psy9709 225 DDIVTLGITNQRETTVVWDLNTGEPLY-----------NAIVWSDTRADNIVDQVLAKFPDQDKDYLKPI-CGLPVSPYF 292 (500)
Q Consensus 225 ~~I~~I~vs~~~~~~v~~d~~~G~~l~-----------~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~-tG~~~~~~~ 292 (500)
.+|.+||+|+|++++++||+ +|+|++ |+|+|+|.|+.++++++.+..+. ..+++++. +|..+++.+
T Consensus 78 ~~I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~~ 155 (548)
T PRK04123 78 AAVVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHE-RGEADLSRYIGGIYSSEW 155 (548)
T ss_pred hhEEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhcc-chhhHHHHhcCCccCcch
Confidence 78999999999999999999 799998 89999999999999999876531 01346654 488889999
Q ss_pred hHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCC-----eeeeecccccccccccCC-CCCCcHHHHhhcC--
Q psy9709 293 SALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT-----CHVTDVTNASRTMLMNID-SLQWDPLLCKYFA-- 364 (500)
Q Consensus 293 ~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g-----~~~~d~s~as~t~l~d~~-~~~W~~~ll~~~g-- 364 (500)
+++||+||++|+||+|++++ +|++++|||.|+|| | ..++|.++++.+++||.+ +..|++++++.+|
T Consensus 156 ~~~kl~Wl~~~~P~~~~~~~----~~l~~~dyl~~~LT--G~~~~~~~~~~~~~as~~~~~d~~~~~~~s~ell~~~g~~ 229 (548)
T PRK04123 156 FWAKILHVLREDPAVYEAAA----SWVEACDWVVALLT--GTTDPQDIVRSRCAAGHKALWHESWGGLPSADFFDALDPL 229 (548)
T ss_pred HHHHHHHHHhhCHHHHHHHh----HhccHHHHHHHHHh--CCCCccccccchhhcccccccccccCCCCCHHHHHHhccc
Confidence 99999999999999999987 89999999999999 6 677999999999999999 5666999999996
Q ss_pred ----CCCCCCCCcccCCcccceeecC----Ccc---------------------------------eEEEEEee------
Q psy9709 365 ----VPPTILPEIRSSSEIYGKVHSN----NGL---------------------------------VTTVAYQF------ 397 (500)
Q Consensus 365 ----l~~~~lP~i~~~~~~~G~~~~~----~G~---------------------------------~~~~~~~~------ 397 (500)
++.++||+++++++++|.+... .|+ ...+....
T Consensus 230 l~~~i~~~llP~l~~~g~~~G~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~GTs~~~~~~~~~~~~~ 309 (548)
T PRK04123 230 LARGLRDKLFTETWTAGEPAGTLTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVMGTSTCDILLADKQRAV 309 (548)
T ss_pred hhhhhHhhcCCccccCCCcccccCHHHHHHhCCCCCCeEEecchhhhhhhcccCcCCCcEEEEecCceEEEEecCCcccc
Confidence 8889999999999999984320 110 00000000
Q ss_pred --------cCCCCceeeechhhhchhHHHHHHHHHcCC-----------CCCHHHHHHHHHhcC-CCCCeEEeccCCCCC
Q psy9709 398 --------GPDATPIYALEGSIAVAGAAVKWLRDNLNL-----------MDNVRETESLAEKVM-TTGDVYFVPAFGGLY 457 (500)
Q Consensus 398 --------~~~~p~~~~~~g~~~~~G~~~~w~~~~~~~-----------~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r 457 (500)
+...|+.|.++++++++|.+++||++.++. ...|+.++++++++| ++++++|+|||.|+|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger 389 (548)
T PRK04123 310 PGICGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGRR 389 (548)
T ss_pred CceeecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCCC
Confidence 012356788899999999999999998741 134788888888876 899999999999999
Q ss_pred CCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 458 APYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 458 ~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
+|++||++||+|+||+.+|+++||+||++||+||.+|+++|.|
T Consensus 390 ~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l 432 (548)
T PRK04123 390 TPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECF 432 (548)
T ss_pred CCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875
No 10
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=8.7e-57 Score=473.40 Aligned_cols=323 Identities=19% Similarity=0.258 Sum_probs=274.8
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecc--cccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 230 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~--~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I 230 (500)
+++||||+|||++|+++||.+ |++++..+.+++ ...+.+||.|||+++||+++++++++++++. ...+|.+|
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~~-G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~-----~~~~I~~I 75 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDRQ-GKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL-----TECHIRGI 75 (470)
T ss_pred ceEEEEecCCCceEEEEEcCC-CcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC-----CccceEEE
Confidence 489999999999999999975 999999988876 3457889999999999999999999998752 24579999
Q ss_pred EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709 231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA 310 (500)
Q Consensus 231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 310 (500)
++|+|+++++++|+ +|+|++|+|+|+|.|+.++++++.+..+. +.+++.+|.++.+.++++||+|+++|+||+|++
T Consensus 76 ~is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~Kl~Wl~~~~P~~~~~ 151 (470)
T PRK10331 76 TVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVMENIERYISA---QQLQQISGVGAFSFNTLYKLVWLKENHPQLLEQ 151 (470)
T ss_pred EEeccccceEEECC-CcCCccCceeecCCCcHHHHHHHHHhcCH---HHHHhhhCCCccccchHHHHHHHHHhCHHHHHH
Confidence 99999999999999 79999999999999999999999887653 568889999998999999999999999999999
Q ss_pred hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----C
Q psy9709 311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----N 386 (500)
Q Consensus 311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~ 386 (500)
++ +|++++|||.|+|| |++++|+|+|+++++||+++++|++++++.+||+.++||+|+++++++|++.. .
T Consensus 152 ~~----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~~~~lP~i~~~g~~~G~v~~~~a~~ 225 (470)
T PRK10331 152 AH----AWLFISSLINHRLT--GEFTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFPRLVEAGEQIGTLQPSAAAL 225 (470)
T ss_pred hh----hhcCHHHHHHHhhc--CccccchhhccceeeeecccCCCCHHHHHHcCCCHHHCCCcccccccccccCHHHHHH
Confidence 87 89999999999999 78999999999999999999999999999999999999999999999998432 1
Q ss_pred Ccce-----------------------EEEEEeecC---------------------------CCCceeeechhhhchhH
Q psy9709 387 NGLV-----------------------TTVAYQFGP---------------------------DATPIYALEGSIAVAGA 416 (500)
Q Consensus 387 ~G~~-----------------------~~~~~~~~~---------------------------~~p~~~~~~g~~~~~G~ 416 (500)
.|+. .......|+ ..++.|..++.... |.
T Consensus 226 ~GL~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~ 304 (470)
T PRK10331 226 LGLPVGIPVISAGHDTQFALFGSGAGQNQPVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQSGLYNPGMQWLA-SG 304 (470)
T ss_pred hCCCCCCeEEEccccHHHHHhCCCCCCCCEEEecchhhhheeecCCCcccccccccccceeccccCceeeechhhHH-HH
Confidence 1111 000000110 01233444333333 44
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Q psy9709 417 AVKWLRDNLNL-MDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTR 494 (500)
Q Consensus 417 ~~~w~~~~~~~-~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~ 494 (500)
+++|+++.+.. ...|+.+++++++.| ++++++|+|+|.|+| ||+|+||+.+|+++||+||++|||||++|
T Consensus 305 ~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~--------rg~~~Gl~~~~~~~~l~rAvlEgia~~~~ 376 (470)
T PRK10331 305 VLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQ--------NAGWQGVTLNTTRGHFYRAALEGLTAQLK 376 (470)
T ss_pred HHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccC--------ceeEECCCCCcCHHHHHHHHHHHHHHHHH
Confidence 89999998853 245888988888876 889999999999987 99999999999999999999999999999
Q ss_pred HHHHhC
Q psy9709 495 DILELY 500 (500)
Q Consensus 495 ~~~~~~ 500 (500)
+++|.|
T Consensus 377 ~~~~~l 382 (470)
T PRK10331 377 RNLQVL 382 (470)
T ss_pred HHHHHH
Confidence 999864
No 11
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.3e-56 Score=478.74 Aligned_cols=335 Identities=19% Similarity=0.195 Sum_probs=284.5
Q ss_pred EEEEEeccCCCceEEEEe-CCCCeEEEEeeeeccc-----ccCC------CCeEEEChHHHHHHHHHHHHHHHHHHHhCC
Q psy9709 154 LIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDIST-----ISPQ------EGWAEQDPMEILQAVQTTMDRAIEKLSAHG 221 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d-~~~G~vi~~~~~~~~~-----~~~~------~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~ 221 (500)
|+||||+||||+|+++|| .+ |++++..+.+++. .++. +||.||||++||+++++++++++++ .+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~-G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVAT-GEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECCC-CcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cC
Confidence 689999999999999999 65 9999999888874 3453 8999999999999999999999986 35
Q ss_pred CCCCCeeEEEEcCCCceeEEEeCCCCccccc-----------ceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCch
Q psy9709 222 LSRDDIVTLGITNQRETTVVWDLNTGEPLYN-----------AIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSP 290 (500)
Q Consensus 222 ~~~~~I~~I~vs~~~~~~v~~d~~~G~~l~~-----------~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~ 290 (500)
+++++|++|++|+|++|+++||+ +|+|++| +|+|+|.|+.++++++.+.... ..+.+++.+|.++++
T Consensus 78 ~~~~~I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~~~ 155 (536)
T TIGR01234 78 VDPADVVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHA-PGEVDLSRYGGIISS 155 (536)
T ss_pred CCHHHEEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhc-cchhHHHhhCCccCc
Confidence 56678999999999999999999 7999983 9999999999999999876521 025678889999999
Q ss_pred hchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCC-----
Q psy9709 291 YFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAV----- 365 (500)
Q Consensus 291 ~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl----- 365 (500)
.++++||+||++|+||+|+++. +|++++|||.|+|| |+.++|+++++.+++++...+.|++++++.+|+
T Consensus 156 ~~~~~kl~Wl~~~~pe~~~~~~----~~l~~~dyl~~~LT--G~~~~d~s~a~~~~l~~~~w~~~~~~~l~~~g~~~~~~ 229 (536)
T TIGR01234 156 EWFWAKILQITEEDPAIYQAAD----RWIELADWIVAQLS--GDIRRGRCTAGYKALWHESWGYPSASFFDELNPILNRH 229 (536)
T ss_pred hhHHHHHHHHHhhChHHHHHHh----hhcCHHHHHHHHHh--CCccccchhcccceeccccccCCCHHHHHHhcchhhhh
Confidence 9999999999999999999987 89999999999999 779999999999998876656669999999985
Q ss_pred -CCCCCCCcccCCcccceeec----CCcc----------------------------------eEEEEEeec--------
Q psy9709 366 -PPTILPEIRSSSEIYGKVHS----NNGL----------------------------------VTTVAYQFG-------- 398 (500)
Q Consensus 366 -~~~~lP~i~~~~~~~G~~~~----~~G~----------------------------------~~~~~~~~~-------- 398 (500)
+.++||+|+++++++|.+.. ..|+ ...+.....
T Consensus 230 lp~~~~p~i~~~g~~~G~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~ 309 (536)
T TIGR01234 230 LPDKLFTDIWTAGEPAGTLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMGTSTCHVLIGDKQRAVPGM 309 (536)
T ss_pred hhhhcCCceecCCCcccccCHHHHHHhCCCCCCeEEecchhHhhhhhccccccCCcEEEEEccceEEEEecCccccCCce
Confidence 78899999999999997432 0110 000000000
Q ss_pred ------CCCCceeeechhhhchhHHHHHHHHHcCCC-----------CCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCC
Q psy9709 399 ------PDATPIYALEGSIAVAGAAVKWLRDNLNLM-----------DNVRETESLAEKVM-TTGDVYFVPAFGGLYAPY 460 (500)
Q Consensus 399 ------~~~p~~~~~~g~~~~~G~~~~w~~~~~~~~-----------~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~ 460 (500)
...|+.|.++++++++|.+++||++.+... +.|+.|++.+++.| ++++|+|+|||.|||+|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~p~g~~gllflP~l~Ger~P~ 389 (536)
T TIGR01234 310 CGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQPSGEHGLVALDWFNGNRSPL 389 (536)
T ss_pred eeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhCCCCCCCeEecchhccCCCCC
Confidence 012566778888999999999999987421 23788888887776 899999999999999999
Q ss_pred CCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 461 ~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
+|+++||+|+|++.+|+++||+||++|||||.+|+++|.|
T Consensus 390 ~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l 429 (536)
T TIGR01234 390 VDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETF 429 (536)
T ss_pred CCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
No 12
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=9.9e-57 Score=479.52 Aligned_cols=329 Identities=21% Similarity=0.266 Sum_probs=278.9
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
++|||+|||++|+++||.+ |++++..+.+++..++.+||.|||+++||+++++++++++++ .+++..+|.+|||++
T Consensus 2 ~lgID~GTts~Ka~l~d~~-G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igis~ 77 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST-GDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNSVKGIGFDA 77 (541)
T ss_pred EEEEEecCcCEEEEEEcCC-CCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhheEEEEecc
Confidence 6899999999999999975 999999999998888999999999999999999999999876 456667899999999
Q ss_pred CCceeEEEeCCCCccc---------ccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhCh
Q psy9709 235 QRETTVVWDLNTGEPL---------YNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVS 305 (500)
Q Consensus 235 ~~~~~v~~d~~~G~~l---------~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p 305 (500)
| +++++||+ +|+|+ +|+|+|+|.|+.++++++.+.. +++++.+|.++++.++++||+|+++|+|
T Consensus 78 ~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~-----~~~~~~tG~~~~~~~~~~kl~Wl~~~~P 150 (541)
T TIGR01315 78 T-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINATN-----HNLLRYVGGKMSVEMEIPKVLWLKNNMP 150 (541)
T ss_pred c-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHH-----HHHHHHhCCeeCcchhHHHHHHHHHhCh
Confidence 9 89999999 69999 8999999999999999997542 3578899999999999999999999999
Q ss_pred HHHHHhhcccccccchhHHHHHhhcCCCeeeeeccccccccccc---CCCCCCcHHHHhhcCCCC---CCC----CCccc
Q psy9709 306 SVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMN---IDSLQWDPLLCKYFAVPP---TIL----PEIRS 375 (500)
Q Consensus 306 e~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d---~~~~~W~~~ll~~~gl~~---~~l----P~i~~ 375 (500)
|+|+++. +|++++|||.|+|| |+.++|+++++.+++|| +++++|++++++.+||+. +.| |++++
T Consensus 151 e~~~~~~----~~l~~~dyl~~~LT--G~~~~d~~~as~~~~~d~~d~~~~~W~~ell~~~Gi~~~~~~~l~~~lp~i~~ 224 (541)
T TIGR01315 151 PELFARC----KFFDLTDFLTWRAT--GKEIRSFCSVVCKWGFVPVDGSNKGWQEDFYETIGLGELVTDNFIRMGGSWMS 224 (541)
T ss_pred HHHHHhh----hhcchhhhheeeee--cchhHhHhHHhHhhhccccccccCCCCHHHHHHcCChhhhhccccccCCcccC
Confidence 9999987 89999999999999 78999999999888888 699999999999999994 234 99999
Q ss_pred CCcccce-eecC------------------------CcceE--------------EEEEeec------------------
Q psy9709 376 SSEIYGK-VHSN------------------------NGLVT--------------TVAYQFG------------------ 398 (500)
Q Consensus 376 ~~~~~G~-~~~~------------------------~G~~~--------------~~~~~~~------------------ 398 (500)
+++++|. +.+. .|... ......|
T Consensus 225 ~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~~~~~GTs~~~~~~~~~~~~~~~~ 304 (541)
T TIGR01315 225 PGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRLAAVAGTSTCHMAMTKGPVFVPGV 304 (541)
T ss_pred CCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcEEEEecCceEEEEecCCCccCCce
Confidence 9999996 4310 01100 0001111
Q ss_pred ------CCCCceeeechhhhchhHHHHHHHHHcCCC------------CCHHHHHH----HHHhcC-C-----CCCeEEe
Q psy9709 399 ------PDATPIYALEGSIAVAGAAVKWLRDNLNLM------------DNVRETES----LAEKVM-T-----TGDVYFV 450 (500)
Q Consensus 399 ------~~~p~~~~~~g~~~~~G~~~~w~~~~~~~~------------~~~~~l~~----~~~~~~-~-----~~~l~~~ 450 (500)
...|+.|.++++++++|.+++|+++.+... ..|+.+++ ++++.+ + ++|++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~fl 384 (541)
T TIGR01315 305 WGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVY 384 (541)
T ss_pred eecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHHHHHHhhhhcccCccccCCCceEEc
Confidence 013567888999999999999999876411 23544443 344443 3 4799999
Q ss_pred ccCCCCCCCCCCCCCcEEEEcCCCCCCH---HHHHHHHHHHHHHHHHHHHHhC
Q psy9709 451 PAFGGLYAPYWRKDARGVICGMTQFTTK---GHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 451 P~~~G~r~P~~~~~~~g~f~Gl~~~~~~---~~l~rAv~Egia~~~~~~~~~~ 500 (500)
|||.|+|+|+|||++||+|+||+.+|++ +||+||++|||||++|+++|.|
T Consensus 385 P~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l 437 (541)
T TIGR01315 385 PDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAM 437 (541)
T ss_pred cccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 8999999999999999999875
No 13
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=1.6e-55 Score=469.13 Aligned_cols=332 Identities=20% Similarity=0.297 Sum_probs=281.4
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 230 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I 230 (500)
+|+||||+||||+|+++||.+ |++++..+.+++.. .+.+|+.|||+++||+++++++++++++ .++...+|.+|
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~-G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~I~aI 78 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN-GNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASDIAAV 78 (520)
T ss_pred cEEEEEecCCCceEEEEECCC-CCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccceEEE
Confidence 499999999999999999975 99999988887644 3568999999999999999999999876 35566789999
Q ss_pred EEcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHH
Q psy9709 231 GITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRA 310 (500)
Q Consensus 231 ~vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~ 310 (500)
++|+|++++++||+ +|+|+++ +.|.|.|+.++++++.+..+. ..+++++.+|.++ +.++++||+|+++|+||+|++
T Consensus 79 ~~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~-~~~~~~~~tG~~~-~~~~~~kl~Wl~~~~pe~~~~ 154 (520)
T PRK10939 79 SATSMREGIVLYDR-NGTEIWA-CANVDARASREVSELKELHNN-FEEEVYRCSGQTL-ALGALPRLLWLAHHRPDIYRQ 154 (520)
T ss_pred EEECCcccEEEECC-CCCEeeC-CcCCCcccHHHHHHHHHhcCh-HHHHHHHHhCCcC-CcchHHHHHHHHHcCcHHHHH
Confidence 99999999999999 7999976 578999999999999876542 1246788999875 678999999999999999999
Q ss_pred hhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----C
Q psy9709 311 IKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----N 386 (500)
Q Consensus 311 ~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~ 386 (500)
+. +|++++|||.|+|| |++++|+|+|+++++||+++++|++++++.+||+.++||+|+++++++|.+.. .
T Consensus 155 ~~----~~~~~~dyl~~~LT--G~~~~d~s~As~tgl~d~~~~~W~~~ll~~~gi~~~~lP~i~~~g~~~G~v~~~~A~~ 228 (520)
T PRK10939 155 AH----TITMISDWIAYMLS--GELAVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGHVTAKAAAE 228 (520)
T ss_pred hh----eEechhHhhhheee--CceeeEhhhhhceeeeecCCCCCCHHHHHHcCCCHHHCCCCccCCceeeeecHHHHHh
Confidence 87 89999999999999 78999999999999999999999999999999999999999999999998431 1
Q ss_pred Ccce--------------------------------EE--EEEee--------------cCCCCceeeechhhhchhHHH
Q psy9709 387 NGLV--------------------------------TT--VAYQF--------------GPDATPIYALEGSIAVAGAAV 418 (500)
Q Consensus 387 ~G~~--------------------------------~~--~~~~~--------------~~~~p~~~~~~g~~~~~G~~~ 418 (500)
.|+. |+ +.... .+..|+.|.+++.++++|.++
T Consensus 229 ~GL~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l 308 (520)
T PRK10939 229 TGLRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNLPAPVTDPNMNIRINPHVIPGMVQAESISFFTGLTM 308 (520)
T ss_pred hCCCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEeccccccCccccceeceeeeCCcceEeeeeccceeee
Confidence 1110 00 00000 011256788889999999999
Q ss_pred HHHHHHcCCC----------CCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCC---CHHHHHHH
Q psy9709 419 KWLRDNLNLM----------DNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFT---TKGHIIRA 484 (500)
Q Consensus 419 ~w~~~~~~~~----------~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~---~~~~l~rA 484 (500)
+||++.|... +.|+.++++++++| +++++ +|||.|+|.|.+++++||+|+||+.+| +++||+||
T Consensus 309 ~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl--~P~l~g~~~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RA 386 (520)
T PRK10939 309 RWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGI--IPIFSDVMRFKSWYHAAPSFINLSIDPEKCNKATLFRA 386 (520)
T ss_pred ehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCC--cccccCCCCCCCCcccceeEEccccCcccCCHHHHHHH
Confidence 9999987431 24788899888887 87776 599999987666678999999999987 99999999
Q ss_pred HHHHHHHHHHHHHHhC
Q psy9709 485 ALEAICFQTRDILELY 500 (500)
Q Consensus 485 v~Egia~~~~~~~~~~ 500 (500)
++|||||.+|++++.|
T Consensus 387 vlEgia~~~~~~l~~l 402 (520)
T PRK10939 387 LEENAAIVSACNLQQI 402 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999864
No 14
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=8.2e-55 Score=461.26 Aligned_cols=330 Identities=29% Similarity=0.421 Sum_probs=291.7
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 235 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~ 235 (500)
+|||+|||++|++++|.+ |+++...+.+++...+.+||.+||++++|+.+++++++++++ .++++.+|.+||+++|
T Consensus 1 lgIDiGtt~ik~~l~d~~-g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~I~gIgvs~~ 76 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQ-GEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQDIKGIGISGQ 76 (481)
T ss_pred CceeecCcceEEEEECCC-CCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEecC
Confidence 589999999999999975 999999999999888899999999999999999999999876 4566778999999999
Q ss_pred CceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhccc
Q psy9709 236 RETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENR 315 (500)
Q Consensus 236 ~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~ 315 (500)
++++++||+ +|++++|+++|.|.|..++.+++.+.++ ...+++.+|....+.++++||+||++|+||+|+++.
T Consensus 77 ~~g~v~~d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~~---~~~~~~~~g~~~~~~~~~~kl~wl~~~~p~~~~~~~--- 149 (481)
T TIGR01312 77 MHGLVLLDA-NGEVLRPAILWNDTRTAQECEELEAELG---DERVLEITGNLALPGFTAPKLLWVRKHEPEVFARIA--- 149 (481)
T ss_pred CceeEEECC-CcCCCccchhhhccchHHHHHHHHHhcC---HhHHHHHHCCCCCccchHHHHHHHHHcChHHHHHhh---
Confidence 999999998 7999999999999999998888887764 256788899999999999999999999999999987
Q ss_pred ccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec----CCcc--
Q psy9709 316 CLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----NNGL-- 389 (500)
Q Consensus 316 ~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~----~~G~-- 389 (500)
+|++++|||.|+|| |+.++|+++|++|++||+++++|++++++.+|+++++||+|+++++++|++.. ..|+
T Consensus 150 -~~~~~~~yi~~~Lt--G~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi~~~~Lp~iv~~~~~~G~v~~~~a~~~Gl~~ 226 (481)
T TIGR01312 150 -KVMLPKDYLRYRLT--GEYVTEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSA 226 (481)
T ss_pred -eeeCchHHHhhhhc--CCeeeeHHHhhcccccccCCCCCCHHHHHHhCCCHHHCCCccCCCCeeeeEcHHHHHHhCCCC
Confidence 89999999999999 78999999999999999999999999999999999999999999999998431 0110
Q ss_pred --------------------------------eEEEEEe--------------ecCCCCceeeechhhhchhHHHHHHHH
Q psy9709 390 --------------------------------VTTVAYQ--------------FGPDATPIYALEGSIAVAGAAVKWLRD 423 (500)
Q Consensus 390 --------------------------------~~~~~~~--------------~~~~~p~~~~~~g~~~~~G~~~~w~~~ 423 (500)
...+... ..+..|+.|.+++++.++|.+++|+++
T Consensus 227 g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~w~~~ 306 (481)
T TIGR01312 227 GVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWLPMGVTLSATSSLEWFRE 306 (481)
T ss_pred CCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceEEEeEehhhHHHHHHHHH
Confidence 0000000 011246778888999999999999999
Q ss_pred HcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 424 NLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 424 ~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
.++. .+|+.+++++++++ ++++++|+|||.|+|.|++|+++||+|+|++.+|+++|++||++||+||.+|++++.|
T Consensus 307 ~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l 383 (481)
T TIGR01312 307 LFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDIL 383 (481)
T ss_pred HhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8853 46888999888877 8889999999999999999999999999999999999999999999999999999864
No 15
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=8.4e-55 Score=457.46 Aligned_cols=322 Identities=22% Similarity=0.321 Sum_probs=271.4
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecc--cccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~--~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
+++|||+|||++|+++||.+ |++++..+.+++ ...+.+||.|||+++||+++++++++++++ +.+.+|.+|+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~-g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~ 75 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ-GKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIA 75 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC-CCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEE
Confidence 68999999999999999974 999999888866 346789999999999999999999999853 3456799999
Q ss_pred EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHh
Q psy9709 232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI 311 (500)
Q Consensus 232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~ 311 (500)
+++|+++++++|+ +|+|++|+|+|+|.|+.++++++.+..+. +++++.||.++.+.++++||+|+++|+||+|+++
T Consensus 76 ~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~wl~~~~pe~~~~~ 151 (465)
T TIGR02628 76 VTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVMDNIERLLDA---QRLYAINGIGAYSFNTLYKLVWLKEHHPQLFERM 151 (465)
T ss_pred EeccccceEEECC-CCCCccccccccCcccHHHHHHHHHhhCH---HHHHHHhCCCccccchHHHHHHHHHhChHHHHHH
Confidence 9999999999999 79999999999999999999999987653 5688899999888899999999999999999999
Q ss_pred hcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC----C
Q psy9709 312 KENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----N 387 (500)
Q Consensus 312 ~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~----~ 387 (500)
+ +|++++|||.|+|| |++++|+|+|+++++||+++++|++++++.+||+.++||+++++++++|.+... .
T Consensus 152 ~----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~~~~lP~l~~~~~~~G~v~~~~a~~~ 225 (465)
T TIGR02628 152 H----KFVFISSMITHRLT--GEFTTDITMAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQNSAAAML 225 (465)
T ss_pred H----HhhCcHHHHHHHHh--CCcccchhhhhcceeeecCcCCCCHHHHHHcCCCHHHCCCcccCCccceeeCHHHHHHh
Confidence 8 89999999999999 789999999999999999999999999999999999999999999999985321 1
Q ss_pred cce-----------------------EEEEEeecC---------------------------CCCceeeechhhhchhHH
Q psy9709 388 GLV-----------------------TTVAYQFGP---------------------------DATPIYALEGSIAVAGAA 417 (500)
Q Consensus 388 G~~-----------------------~~~~~~~~~---------------------------~~p~~~~~~g~~~~~G~~ 417 (500)
|+. ..+....|+ ..++.|...+...++| +
T Consensus 226 Gl~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~ 304 (465)
T TIGR02628 226 GLPVGVPVISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARSQQVDTSLLSQYAGSTCELDSQAGLYNPAMQWLASG-V 304 (465)
T ss_pred CCCCCCCEEecCccHHHHHhccCCCCCcEEEeccchhhheeccCcCCCCccccccccccccccCCceeeehhhhhhhh-H
Confidence 110 000000110 1134555444445555 8
Q ss_pred HHHHHHHcCCC----CC-HHHHHHHHHhcC-CCCCeE-EeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHH
Q psy9709 418 VKWLRDNLNLM----DN-VRETESLAEKVM-TTGDVY-FVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAIC 490 (500)
Q Consensus 418 ~~w~~~~~~~~----~~-~~~l~~~~~~~~-~~~~l~-~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia 490 (500)
++|+++.+... .+ |++|++.+++++ ++++++ |+|++. |.+||+|+||+.+|+++||+||++||||
T Consensus 305 ~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~--------~~a~g~~~Gl~~~~~~~~l~rAvlEgia 376 (465)
T TIGR02628 305 LEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLL--------SCGQGGIQGLTLNTTRGHIYRAALEGLT 376 (465)
T ss_pred HHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCC--------cccceeEECCCCCCCHHHHHHHHHHHHH
Confidence 99999977421 12 688888888876 888998 888764 5679999999999999999999999999
Q ss_pred HHHHHHHHhC
Q psy9709 491 FQTRDILELY 500 (500)
Q Consensus 491 ~~~~~~~~~~ 500 (500)
|.+|+++|.|
T Consensus 377 ~~~r~~~e~l 386 (465)
T TIGR02628 377 AQLKRNLQML 386 (465)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 16
>PLN02669 xylulokinase
Probab=100.00 E-value=6.4e-52 Score=441.44 Aligned_cols=336 Identities=14% Similarity=0.130 Sum_probs=284.3
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccc---cCCCCeEEEChH----------HHHHHHHHHHHHHHHHH
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI---SPQEGWAEQDPM----------EILQAVQTTMDRAIEKL 217 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~---~~~~g~~~~d~~----------~~~~~i~~~l~~~~~~~ 217 (500)
..+|+||||+|||++|+++||.+ |++++..+.+++.. ++.++++|||++ .||+++..+++++.+
T Consensus 6 ~~~~~LGiD~GT~s~Ka~l~d~~-g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~-- 82 (556)
T PLN02669 6 EDSLFLGFDSSTQSLKATVLDSN-LRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK-- 82 (556)
T ss_pred CCCeEEEEecccCCeEEEEEcCC-CCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH--
Confidence 35689999999999999999975 99999999998743 345668999998 677999999999863
Q ss_pred HhCCCCCCCeeEEEEcCCCceeEEEeCCCCccc-------------------ccceeeccCCCHHHHHHHHhhCCCCccc
Q psy9709 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL-------------------YNAIVWSDTRADNIVDQVLAKFPDQDKD 278 (500)
Q Consensus 218 ~~~~~~~~~I~~I~vs~~~~~~v~~d~~~G~~l-------------------~~~i~w~D~r~~~~~~~~~~~~~~~~~~ 278 (500)
.+++.++|+||++|+|+|++|+||+.+|++| .|+++|+|.|+.++++++.+.++. .+
T Consensus 83 --~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l~~~~gg--~~ 158 (556)
T PLN02669 83 --EKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREIEEAVGG--AA 158 (556)
T ss_pred --cCCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHHHHHcCc--HH
Confidence 3566788999999999999999988447776 688999999999999999987653 35
Q ss_pred hhhcccCCCCchhchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCee-eeecccccccccccCCCCCCcH
Q psy9709 279 YLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCH-VTDVTNASRTMLMNIDSLQWDP 357 (500)
Q Consensus 279 ~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~-~~d~s~as~t~l~d~~~~~W~~ 357 (500)
++++.||.+.++.++++||+|+++|+||+|++++ +|+.++|||.|+|| |+. .+|+|+|+++++||+++++|++
T Consensus 159 ~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~----~i~~~~dyl~~~Lt--G~~~~~D~sdasg~~l~Di~~~~Ws~ 232 (556)
T PLN02669 159 ELSKLTGSRAYERFTGPQIRKIYETQPEVYHDTE----RISLVSSFMASLLV--GDYASIDETDGAGMNLMDIEKRCWSK 232 (556)
T ss_pred HHHHHHCCcccccccHHHHHHHHHhChHHHHHHH----hhccHHHHHHHhhc--CCCccccchhhhhhhhhccccCCcCH
Confidence 6888999999999999999999999999999998 89999999999999 775 6999999999999999999999
Q ss_pred HHHhhcCCC-CCCCCCcccCCcccceeecC--------------------------Ccc------------eEEEEEee-
Q psy9709 358 LLCKYFAVP-PTILPEIRSSSEIYGKVHSN--------------------------NGL------------VTTVAYQF- 397 (500)
Q Consensus 358 ~ll~~~gl~-~~~lP~i~~~~~~~G~~~~~--------------------------~G~------------~~~~~~~~- 397 (500)
++++.+++. .++||+++++++++|++... .|+ .+++....
T Consensus 233 ~ll~~~~~~l~~~Lp~~~~~~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~slGTs~~~~~~~~ 312 (556)
T PLN02669 233 AALEATAPGLEEKLGKLAPAHAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTPGDLAISLGTSDTVFGITR 312 (556)
T ss_pred HHHHhhCccHHHHCcCCCCCCcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCCCeEEEEEcccceEEEecC
Confidence 999999544 37899999999999984321 011 11111110
Q ss_pred -----------cCCC-CceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCC----
Q psy9709 398 -----------GPDA-TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPY---- 460 (500)
Q Consensus 398 -----------~~~~-p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~---- 460 (500)
.+.. |+.|..+++..+||.+++|+++.+.. ..|+.++++++..| +++|++++||+.||+.|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~y~~~~~~~ngg~~~~w~r~~~~~-~~~~~~~~~~~~~~~g~~g~l~~~~~~~e~~P~~~~~ 391 (556)
T PLN02669 313 EPQPSLEGHVFPNPVDPESYMVMLCYKNGSLTREDIRNRCAD-GSWDVFNKLLEQTPPLNGGKLGFYYKEHEILPPLPVG 391 (556)
T ss_pred CCCCCCCcceeeCccCCCCeEEEEEecchHHHHHHHHHHhcc-CcHHHHHHHHHhCCCCCCCEEEeeccCcccCCCCCCc
Confidence 0112 67899999999999999999998853 46888899887776 888999899999999996
Q ss_pred CCCCCcEEEEcCCCC---------CCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 461 WRKDARGVICGMTQF---------TTKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 461 ~~~~~~g~f~Gl~~~---------~~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
+++.++|.|+|++.. |+++|++||++||++|++|.+++.|
T Consensus 392 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l 440 (556)
T PLN02669 392 FHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERF 440 (556)
T ss_pred cchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999988 6999999999999999999999875
No 17
>KOG2517|consensus
Probab=100.00 E-value=1e-50 Score=411.50 Aligned_cols=344 Identities=46% Similarity=0.693 Sum_probs=287.9
Q ss_pred CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
.++++|||+||||+|+++||..+|+++..+..++....+++||.||||.++|+++++|++.+.+++...++....+++|+
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 68999999999999999999778999999999999889999999999999999999999999988765556666688999
Q ss_pred EcCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHH-HHH
Q psy9709 232 ITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRA 310 (500)
Q Consensus 232 vs~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~-~~~ 310 (500)
+++|+++.++|++..|+|++++|.|+|.|+..+++++....+. ....+.+.+|.+++++|.++||+||++|.|++ ..+
T Consensus 85 v~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~-~~~~~~~~~Gl~~s~~f~~~KL~Wl~dn~~~~~~~~ 163 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPS-NLFLPRPYCGLPVSPEFSAPKLRWLLDNVPEVLKAK 163 (516)
T ss_pred EEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCc-hhcccccccCCccccccchheehHHhhhCHHHHHHH
Confidence 9999999999999899999999999999999999999988764 12224467999999999999999999999999 444
Q ss_pred hhcccccccchhHHHHHhhcCC-Ce---eeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecC
Q psy9709 311 IKENRCLFGTVDTWLVWNLTGR-TC---HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN 386 (500)
Q Consensus 311 ~~~~~~~~~~~~dyi~~~LTg~-g~---~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~ 386 (500)
.. ..+.+.+|+.|++++. +. +++|.++++++++||..+..|+..+++.+|++.+++|++..+++++|.....
T Consensus 164 ~~----~~~~~~~~~twl~~~~t~~~~~~~~d~~Nas~t~~f~~~~~~wd~~~~~f~~lp~~llp~i~s~~e~~g~~~~~ 239 (516)
T KOG2517|consen 164 EE----GGFDLGTFDTWLATGLTGRSSCHCTDVTNASRTGLFNTESGLWDLKLLDFFGLPLNLLPDIRSSSEVYGTTAAG 239 (516)
T ss_pred Hh----cccchhhhhhheeecCCccceeccccccccccccccchhhhhhhhhhhhhhCCCcccCCccccccccccccccc
Confidence 43 4445555555555533 33 5899999999999999999999999999999999999999999999983211
Q ss_pred -----Cc-------------ce--------------EEEEEee---cC----CCCc---------------eeeechhhh
Q psy9709 387 -----NG-------------LV--------------TTVAYQF---GP----DATP---------------IYALEGSIA 412 (500)
Q Consensus 387 -----~G-------------~~--------------~~~~~~~---~~----~~p~---------------~~~~~g~~~ 412 (500)
.| ++ .+-+..+ |+ ..|| .|.++|...
T Consensus 240 ~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~~~~~g~q~g~g~~~~~~leg~~a 319 (516)
T KOG2517|consen 240 DLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGLLTTVGGQSGTGKLLDHALEGHAA 319 (516)
T ss_pred ccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCccceecccccccccHHHHHHhcccc
Confidence 01 00 0001111 11 1122 255677777
Q ss_pred chhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEcCCCCCCHHHHHHHHHHHHHHH
Q psy9709 413 VAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQ 492 (500)
Q Consensus 413 ~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~Gl~~~~~~~~l~rAv~Egia~~ 492 (500)
.+|..++|+++.+...+....+++++..+..+.+++|.|.|.|.|+|+|||++||+|.|++.+++..||.||++|+|||+
T Consensus 320 ~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i~Gls~~ts~~hia~A~leai~fq 399 (516)
T KOG2517|consen 320 FAGALVQWLRDNLGIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVIIGLSQDTSKEHLARAALEAIAFQ 399 (516)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeEEEecCCCCHHHHHHHHHHHHHHH
Confidence 78999999999887655566677788877788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q psy9709 493 TRDILELY 500 (500)
Q Consensus 493 ~~~~~~~~ 500 (500)
+|.+++.|
T Consensus 400 tr~Il~am 407 (516)
T KOG2517|consen 400 TREILEAM 407 (516)
T ss_pred HHHHHHHH
Confidence 99999975
No 18
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1.1e-49 Score=400.09 Aligned_cols=334 Identities=23% Similarity=0.315 Sum_probs=283.9
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 230 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I 230 (500)
|..|++|||+||.|.|+++||..+|++++.+.++|+...+.....+|++.++|++++.+++.++++ +++++.+|++|
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gI 77 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGI 77 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEE
Confidence 457899999999999999999977999999999999988888888999999999999999999987 68999999999
Q ss_pred EEcCCCceeEEEeCCCCcccc---------cceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHH
Q psy9709 231 GITNQRETTVVWDLNTGEPLY---------NAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLI 301 (500)
Q Consensus 231 ~vs~~~~~~v~~d~~~G~~l~---------~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~ 301 (500)
||+.. +|++++|+ +|+|+. ++|+|+|+|+.+++++++.... .++...|..++|.|..|||+||+
T Consensus 78 GvDaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in~~~~-----~~L~~~GG~~SpEm~~PKlmwl~ 150 (544)
T COG1069 78 GVDAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEINATCH-----PVLDYYGGKISPEMMIPKLMWLK 150 (544)
T ss_pred EEcce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHHHHHHhhch-----HHHHhhCCccChhhhHHHHHHHH
Confidence 99999 89999999 699985 4899999999999999998753 37788899999999999999999
Q ss_pred hhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccC-CCCCCcHHHHhhcCCCC-----CCCC-Ccc
Q psy9709 302 QNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNI-DSLQWDPLLCKYFAVPP-----TILP-EIR 374 (500)
Q Consensus 302 ~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~-~~~~W~~~ll~~~gl~~-----~~lP-~i~ 374 (500)
+|.|++|+++. +|+.+.|||.|+|| |+..-+.+++.....|.. +.+.|++++++.+|++. ..|| +++
T Consensus 151 ~~~p~~~~~a~----~~fdl~D~l~~~lt--G~~~Rs~Ct~~~Kw~~~~~~~~~~~~~~f~~ig~~~l~~~~~~l~~~i~ 224 (544)
T COG1069 151 REAPAVWERAA----HIFDLADWLTWKLT--GSIARSRCTAGCKWNWLEHEGGLWSADFFDKIGLDDLRELDSKLPEDIV 224 (544)
T ss_pred hhChHHHHHhh----hhhhHHHHHHHHhh--cchhhccccceeeeeeeccccCCCCHHHHHhcCchhhhcccccCCcccc
Confidence 99999999987 99999999999999 778888888988888988 55669999999999872 2354 788
Q ss_pred cCCcccceeec---------------------CCcce---------------EEEEEee----------------cCCCC
Q psy9709 375 SSSEIYGKVHS---------------------NNGLV---------------TTVAYQF----------------GPDAT 402 (500)
Q Consensus 375 ~~~~~~G~~~~---------------------~~G~~---------------~~~~~~~----------------~~~~p 402 (500)
+.|+.+|.+++ .+|.. |+.+..+ +...|
T Consensus 225 ~~g~~vg~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~P 304 (544)
T COG1069 225 PAGEPVGGLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLP 304 (544)
T ss_pred cCCccccccCHHHHHHhCCCCCcEEeccceeccccccccccCCCCeEEEEeccceEEEEecCCceecCccccccccccCc
Confidence 99999998322 11111 1111111 11258
Q ss_pred ceeeechhhhchhHHHHHHHHHcCCCC-------C-----H-------HHHHHHHHhc-CCCCCeEEeccCCCCCCCCCC
Q psy9709 403 PIYALEGSIAVAGAAVKWLRDNLNLMD-------N-----V-------RETESLAEKV-MTTGDVYFVPAFGGLYAPYWR 462 (500)
Q Consensus 403 ~~~~~~g~~~~~G~~~~w~~~~~~~~~-------~-----~-------~~l~~~~~~~-~~~~~l~~~P~~~G~r~P~~~ 462 (500)
|.|.+||++++.|..++||.+..+... . | +.|.+.+.+. |+..+++++|+|+|+|+|+.|
T Consensus 305 g~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~f~GNRsP~aD 384 (544)
T COG1069 305 GLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLAD 384 (544)
T ss_pred chhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHHHHhhHhccCcccCCcEecccccCCcCCCCC
Confidence 899999999999999999999863211 1 1 2334444444 489999999999999999999
Q ss_pred CCCcEEEEcCCCCCCHH---HHHHHHHHHHHHHHHHHHHhC
Q psy9709 463 KDARGVICGMTQFTTKG---HIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 463 ~~~~g~f~Gl~~~~~~~---~l~rAv~Egia~~~~~~~~~~ 500 (500)
|++||+|+|++++|+++ .+|||.+|++||.+|.++|.|
T Consensus 385 p~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 385 PRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred ccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999 899999999999999999975
No 19
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=1.8e-49 Score=416.03 Aligned_cols=318 Identities=17% Similarity=0.221 Sum_probs=256.2
Q ss_pred EEEeccCCCceEEEEeCCC--CeEE-EEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 156 GVIDEGTRTVRFAIISALT--QEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~--G~vi-~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
++||+|||++|++++|.++ |+++ .....+++...+++++.+||++.||+++.++++++.+. ..+|.+|++
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Igi 73 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIGI 73 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEEE
Confidence 5899999999999999752 4666 56666677778889999999999999999999988642 246999999
Q ss_pred cCCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709 233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK 312 (500)
Q Consensus 233 s~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 312 (500)
|+|++++++||+ +|+|++|+|+|+|.|+.++++++.+..+. +++++.+|.++.+.++++||+||++|+||+|++++
T Consensus 74 s~q~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~ 149 (454)
T TIGR02627 74 DTWGVDFVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSELGK---EAIYQRTGIQFLPFNTLYQLRALTEQQPDLLEKVA 149 (454)
T ss_pred eccceeEEEEcC-CCCCccCceecCCCCCHHHHHHHHhhcCH---HHHHHHhCCCcCCccHHHHHHHHHHhChhHHHHHH
Confidence 999999999999 79999999999999999999999887653 67889999999999999999999999999999998
Q ss_pred cccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecCC--cce
Q psy9709 313 ENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNN--GLV 390 (500)
Q Consensus 313 ~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~~--G~~ 390 (500)
+|++++|||.|+|| |+.++|+|+|++|++||+++++|++++++.+||++++||+|+++++++|.+.... |+.
T Consensus 150 ----~~l~~~dyl~~~LT--G~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi~~~~lP~l~~~~~~~G~~~~~gl~g~p 223 (454)
T TIGR02627 150 ----HFLLIPDYLNYRLT--GKKVWEYTNATTTQLVNINTDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQGNQIP 223 (454)
T ss_pred ----HhCCHHHHHHHhee--CCceeeeehhhhcccccCCCCCcCHHHHHHcCCCHHHcCCccCCCCeeEEeecccCCCCC
Confidence 89999999999999 7899999999999999999999999999999999999999999999999754321 110
Q ss_pred EE---------------------EEEeecC--------------------------CCCceeeechhhhchhHHHHHHHH
Q psy9709 391 TT---------------------VAYQFGP--------------------------DATPIYALEGSIAVAGAAVKWLRD 423 (500)
Q Consensus 391 ~~---------------------~~~~~~~--------------------------~~p~~~~~~g~~~~~G~~~~w~~~ 423 (500)
.. .....|+ ..++.|.+.+.+. ++ |+++
T Consensus 224 Vv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~----W~~~ 298 (454)
T TIGR02627 224 VVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFESQTPITNEQALAANITNEGGADGRYRVLKNIM-GL----WLLQ 298 (454)
T ss_pred EEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccCCCCCCCHHHHHhccccccccccEEEeecchh-hh----HHHH
Confidence 00 0001110 0012233332222 23 6665
Q ss_pred HcCC---CCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCC-CcE------EEEcCCCCCCHHHHHHHHHHHHHHHH
Q psy9709 424 NLNL---MDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD-ARG------VICGMTQFTTKGHIIRAALEAICFQT 493 (500)
Q Consensus 424 ~~~~---~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~-~~g------~f~Gl~~~~~~~~l~rAv~Egia~~~ 493 (500)
.+.. ...|+.+.+.+...|. +.|++.|++.|++||. +++ .|+||+..|+++||+||++||+||.+
T Consensus 299 ~~~~~~~~~~~~~l~~~a~~~p~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Gl~~~~~~~~l~RAv~Egva~~~ 373 (454)
T TIGR02627 299 RVCRERDINDLPALIEQAQALPA-----FKSIINPNDDRFINPENMCEEIQAYCRETNQPIPESDAELARCIFDSLALLY 373 (454)
T ss_pred HHHhhhccccHHHHHHHhcCCCC-----CCeeeCCCcccccChhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5431 2346666666654442 3366789999999995 444 45999999999999999999999999
Q ss_pred HHHHHhC
Q psy9709 494 RDILELY 500 (500)
Q Consensus 494 ~~~~~~~ 500 (500)
|+++|.|
T Consensus 374 r~~~e~l 380 (454)
T TIGR02627 374 RQVLLEL 380 (454)
T ss_pred HHHHHHH
Confidence 9999865
No 20
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=1e-44 Score=380.50 Aligned_cols=293 Identities=17% Similarity=0.238 Sum_probs=239.2
Q ss_pred EeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCCceeEEEeCCCCcccccceeeccC
Q psy9709 180 SHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDT 259 (500)
Q Consensus 180 ~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~~~~~v~~d~~~G~~l~~~i~w~D~ 259 (500)
..++++. ..+.+++.++|++.||+++.++++++... ..+|.+|++|+|++++++||+ +|+||+|+|+|+|.
T Consensus 17 ~~r~~~~-~~~~~~~~~~d~~~~~~~i~~~l~~~~~~-------~~~I~~Igis~q~~~~v~lD~-~G~pL~pai~w~D~ 87 (471)
T PRK10640 17 IHRFNNG-LHSQDGFDTWDVDSLESAIRLGLNKVCEE-------GIRIDSIGIDTWGVDYVLLDK-QGQRVGLPVSYRDS 87 (471)
T ss_pred EEecCCC-CeeeCCeeEECHHHHHHHHHHHHHHHhhc-------CCCccEEEEcCCcccEEEECC-CCCCcCCceeccCC
Confidence 3444444 34678899999999999999998887542 357999999999999999999 79999999999999
Q ss_pred CCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeec
Q psy9709 260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDV 339 (500)
Q Consensus 260 r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~ 339 (500)
|+.++++++.+.++. +++++.||.++.+.++++||+|+++|+|++|++++ +|++++|||.|+|| |+.++|+
T Consensus 88 Ra~~~~~~l~~~~~~---~~~~~~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~----~~l~~~dyl~~~LT--G~~~~d~ 158 (471)
T PRK10640 88 RTDGVMAQAQQQLGK---RDIYRRSGIQFLPFNTLYQLRALTEQQPELIAQVA----HALLIPDYFSYRLT--GKMNWEY 158 (471)
T ss_pred CCHHHHHHHHHhcCH---HHHHHHhCCCCCCccHHHHHHHHHHhChHHHHHhh----HeecHHHHHHHHHh--CCcceee
Confidence 999999999987653 67889999999999999999999999999999987 89999999999999 7899999
Q ss_pred ccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeecCCc--ceEE---------------------EEEe
Q psy9709 340 TNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNG--LVTT---------------------VAYQ 396 (500)
Q Consensus 340 s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~~~G--~~~~---------------------~~~~ 396 (500)
|+|++|++||+++++|++++++.+||+.++||+++++++++|.+....| +.-. ....
T Consensus 159 s~as~t~l~d~~~~~W~~ell~~~Gi~~~~LP~lv~~~~~~G~v~~~~g~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s 238 (471)
T PRK10640 159 TNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPLNDSDAAYLS 238 (471)
T ss_pred cHhhhccccCCCcCCcCHHHHHHcCCCHHHcCCCcCCCccceeeecccCCCCCEEEeCCCcHHHHhhccCCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999998543222 1000 0001
Q ss_pred ecC--------------------------CCCceeeechhhhchhHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCCCe
Q psy9709 397 FGP--------------------------DATPIYALEGSIAVAGAAVKWLRDNLNL---MDNVRETESLAEKVMTTGDV 447 (500)
Q Consensus 397 ~~~--------------------------~~p~~~~~~g~~~~~G~~~~w~~~~~~~---~~~~~~l~~~~~~~~~~~~l 447 (500)
.|+ ..++.|.+...+ .| +|+++.+.. ...|+++.++++++|+++++
T Consensus 239 ~GT~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~--~g---~W~~~~~~~~~~~~~~~~l~~~a~~~~g~~gl 313 (471)
T PRK10640 239 SGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNI--MG---LWLLQRVLQERQITDLPALIAATAALPACRFL 313 (471)
T ss_pred eccHhhhheecCCCcCCHHHHHhccCccCCCCceEEEecch--hH---HHHHHHHHHHhccCCHHHHHHHHHhCCCCCce
Confidence 111 012233333222 13 899997642 23577887788888888888
Q ss_pred EEeccCCCCCCCCCCC-CCcEEEEcCCCCC------CHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 448 YFVPAFGGLYAPYWRK-DARGVICGMTQFT------TKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 448 ~~~P~~~G~r~P~~~~-~~~g~f~Gl~~~~------~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
+ +| .|+|. +|| ++||+|+|++..| +++||+||++||+||.+|+++|.|
T Consensus 314 i-~p--~ger~--~~~~~arg~~~gl~~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l 368 (471)
T PRK10640 314 I-NP--NDDRF--INPPSMCSEIQAACRETAQPVPESDAELARCIFDSLALLYADVLHEL 368 (471)
T ss_pred e-CC--Ccccc--cCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 58 69994 675 8999997777766 999999999999999999999865
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=6.9e-44 Score=344.40 Aligned_cols=218 Identities=33% Similarity=0.516 Sum_probs=198.3
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 233 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs 233 (500)
|+||||+|||++|+++||. +|+++...+++++...+.+|+.+||+++||+.+++++++++++ .+..+.+|++|+++
T Consensus 1 y~lgiDiGTts~K~~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~aI~is 76 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE-DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQIKAIGIS 76 (245)
T ss_dssp EEEEEEECSSEEEEEEEET-TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGGEEEEEEE
T ss_pred CEEEEEEcccceEEEEEeC-CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccceeEEEEec
Confidence 6899999999999999996 5999999999999888889999999999999999999999986 35677899999999
Q ss_pred CCCceeEEEeCCCCcccccceeeccCCCHHHHHHHHhhCCCCccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhhc
Q psy9709 234 NQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKE 313 (500)
Q Consensus 234 ~~~~~~v~~d~~~G~~l~~~i~w~D~r~~~~~~~~~~~~~~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~ 313 (500)
+++++++++|+ +|+|++|+++|+|.|+.++++++.+... .+++++.+|.++++.++++||+||++|+||+|++++
T Consensus 77 ~~~~~~v~~D~-~~~pl~~~i~w~D~R~~~~~~~l~~~~~---~~~~~~~tG~~~~~~~~~~kl~wl~~~~p~~~~~~~- 151 (245)
T PF00370_consen 77 GQGHGLVLLDK-DGKPLRPAILWMDTRAAEEAEELNEEGS---PEEIYEKTGLPLSPGYPLAKLLWLKENEPEIFEKAA- 151 (245)
T ss_dssp E-SSEEEEEET-TSSBSSCEE-TT-CTTHHHHHHHHHHTH---HHHHHHHHSS-SSTTSHHHHHHHHHHHSHHHHHHHH-
T ss_pred cccCCcceecc-ccccccccccccccchhhHHHHHHhhcC---cceeeeeccccccccchHHHHHHHHHhCchhhhhhh-
Confidence 99999999999 6999999999999999999999988654 378899999999999999999999999999999998
Q ss_pred ccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcHHHHhhcCCCCCCCCCcccCCcccceeec
Q psy9709 314 NRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385 (500)
Q Consensus 314 ~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~~ll~~~gl~~~~lP~i~~~~~~~G~~~~ 385 (500)
+|++++|||.|+|| |+.++|+|+|+++++||+++++|++++++.+|++.++||+|+++|+++|++..
T Consensus 152 ---~~~~~~dyl~~~Lt--G~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~~~~lP~i~~~g~~~G~~~~ 218 (245)
T PF00370_consen 152 ---KFLTLSDYLAYKLT--GRAATDYSNASRTGLYDIRTGQWDEELLEALGIPEELLPEIVPPGEIIGTLTP 218 (245)
T ss_dssp ---EEEEHHHHHHHHHH--SC-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSGGGGSCEEE-TTSEEEEEEH
T ss_pred ---hcccHHHHHHhhcc--ccccccccchhccccccccccccCHHHHHhhCCChhhCCcEecCCCeeEEECH
Confidence 99999999999999 78999999999999999999999999999999999999999999999999765
No 22
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=99.94 E-value=8.8e-27 Score=231.86 Aligned_cols=147 Identities=35% Similarity=0.531 Sum_probs=130.8
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.||++||.||||+|++|||. +|++++..+.+++.++|++||+||||+++|+++..++++++++ +++.+.+|++|||
T Consensus 5 ~yIlAiDqGTTssRaivfd~-~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIGI 80 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIGI 80 (499)
T ss_pred cEEEEEecCCcceeEEEECC-CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEEe
Confidence 68889999999999999998 9999999999999999999999999999999999999999988 8999999999999
Q ss_pred cCCcceeEEeeCCCCCccccccccCCccc----------------cCCC-----CCCCCCCC------Cc-----ccccc
Q psy9709 104 TNQRETTVVWDLNTGEPLYNAIDKMPSLV----------------YNTP-----PEPSSNTN------NN-----SIQTQ 151 (500)
Q Consensus 104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~----------------~~~t-----~~~~~~~~------n~-----~~~~~ 151 (500)
+.||+|+|+||+++|+|++|+|.|+|+|. +++| ||| |++| |+ +....
T Consensus 81 TNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~dpYF-SatKi~WiLdnv~g~r~~ae~G 159 (499)
T COG0554 81 TNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLDPYF-SATKIKWILDNVPGARERAEKG 159 (499)
T ss_pred eccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccCCCc-cchhhhHHHhhChhhhhHhhcC
Confidence 99999999999999999999999997775 3455 999 9988 55 23345
Q ss_pred CCEEEEEec---------------cCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDE---------------GTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDi---------------GTts~k~~l~d~~~G 175 (500)
+-.+..||. -|+..|++|||..++
T Consensus 160 el~fGTiDtWLiw~LTgg~~h~TD~sNASRT~L~ni~~l 198 (499)
T COG0554 160 ELLFGTIDTWLIWKLTGGKVHVTDYSNASRTMLFNIHSL 198 (499)
T ss_pred CeEEecchhhheeeccCCceeccccchhHHHhccccccc
Confidence 567888887 366778888887654
No 23
>KOG2531|consensus
Probab=99.90 E-value=4.6e-22 Score=195.18 Aligned_cols=337 Identities=15% Similarity=0.157 Sum_probs=244.4
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccC----CCC-------eEEEChH-HHHHHHHHHHHHHHHHH
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISP----QEG-------WAEQDPM-EILQAVQTTMDRAIEKL 217 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~----~~g-------~~~~d~~-~~~~~i~~~l~~~~~~~ 217 (500)
+....+||+|.+|+.+|++++|.+ ++|+..+...+....| .+| .....|- .|.+++--. ++++
T Consensus 6 ~~~~~fLG~DlSTQqlKaviids~-LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDll----l~kl 80 (545)
T KOG2531|consen 6 QPDRSFLGFDLSTQQLKAVIIDSN-LNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLL----LDKL 80 (545)
T ss_pred CCCceeeeeecccceeEEEEEcCC-ccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHH----HHHH
Confidence 334569999999999999999985 9999877666543322 122 3344555 555555444 4444
Q ss_pred HhCCCCCCCeeEEEEcCCCceeEEEeCCCCcc-cc-------------------cceeeccCCCHHHHHHHHhhCCCCcc
Q psy9709 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEP-LY-------------------NAIVWSDTRADNIVDQVLAKFPDQDK 277 (500)
Q Consensus 218 ~~~~~~~~~I~~I~vs~~~~~~v~~d~~~G~~-l~-------------------~~i~w~D~r~~~~~~~~~~~~~~~~~ 277 (500)
..++.+...|.||+=++|.|+.|.|.+ .++- |. ..-.|+|.....+++++...+++ .
T Consensus 81 ~~~~~d~~kV~aiSGagQQHGsVyWs~-ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~ElE~~VGG--~ 157 (545)
T KOG2531|consen 81 REAGFDLSKVMAISGAGQQHGSVYWSK-GAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQELEEAVGG--A 157 (545)
T ss_pred HHcCCCHHHhhhhcccccccceeeehh-hhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHHHHHhcc--H
Confidence 456788888999999999999999987 3432 11 23469999999999999998875 6
Q ss_pred chhhcccCCCCchhchHHHHHHHHhhChHHHHHhhcccccccchhHHHHHhhcCCCeeeeecccccccccccCCCCCCcH
Q psy9709 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDP 357 (500)
Q Consensus 278 ~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~~~~~~~~~~dyi~~~LTg~g~~~~d~s~as~t~l~d~~~~~W~~ 357 (500)
.++.+.||...+..|+.++++-+.+.+||+|+++. ++-.+..|++-.|-| +...+|+|+++++.|+|++++.|+.
T Consensus 158 ~~la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~Te----rISLVSsFlaSlllG-~~a~id~sDgsGMNL~dIr~k~ws~ 232 (545)
T KOG2531|consen 158 QELAKLTGSRAYERFTGPQIRKIYQQEPEAYEKTE----RISLVSSFLASLLLG-SYAPIDESDGSGMNLLDIRKKKWSK 232 (545)
T ss_pred HHHHHhhcchhhhhcccHHHHHHHHhChHhhhccc----eeehHHHHHHHHHhc-cccceecccccCchHHHHhhhhhhH
Confidence 78889999999999999999999999999999987 888889999999997 4778999999999999999999999
Q ss_pred HHHhhcCCC-CCCCCCcccCCcccceeec----------------C---------------------CcceEEEEEeec-
Q psy9709 358 LLCKYFAVP-PTILPEIRSSSEIYGKVHS----------------N---------------------NGLVTTVAYQFG- 398 (500)
Q Consensus 358 ~ll~~~gl~-~~~lP~i~~~~~~~G~~~~----------------~---------------------~G~~~~~~~~~~- 398 (500)
++|+++.-+ +++|-..+++..++|++.. . .|.++|+.....
T Consensus 233 ~~L~~~apdL~~KL~~pv~~~~~~G~I~~Yfv~r~gF~p~C~Vv~~tGDNpsslagL~l~~~dl~iSLGTSdTv~m~t~~ 312 (545)
T KOG2531|consen 233 ALLDACAPDLEEKLGKPVPPMSIAGTISKYFVKRYGFPPDCKVVPSTGDNPSSLAGLPLRPGDLLISLGTSDTVFMVTKE 312 (545)
T ss_pred HHHhhhChhHHHHhCCCCCccccccchhhhhHhhcCCCCCCEEEecCCCChHHhhCccccCCceEEEecCcceEEEEcCC
Confidence 999988644 3456666778788888322 1 122233322111
Q ss_pred -------C-----CCCceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCC-CCC
Q psy9709 399 -------P-----DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYW-RKD 464 (500)
Q Consensus 399 -------~-----~~p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~-~~~ 464 (500)
| ..|..|+..-|.-+|+.+-+-+|+... ..+++..++.....| |.++.+-+-|=.+|-.|.. -..
T Consensus 313 ~~p~~egHvf~hP~~~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~g~~g~~f~~~EIvP~~~~G~ 391 (545)
T KOG2531|consen 313 YHPSPEGHVFCHPTDPNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNNGNLGVYFPEREIVPSVPKGT 391 (545)
T ss_pred CCCCCCcceeccCCCccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCCCceeEecccccccCCCCccc
Confidence 1 124568877788899999898887653 357899999877776 6666533222245656511 111
Q ss_pred CcEEEE---------cCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 465 ARGVIC---------GMTQFTTKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 465 ~~g~f~---------Gl~~~~~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
.|=.+- ++-...++++-+||++||-++..|...+.|
T Consensus 392 ~R~~~~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~l 436 (545)
T KOG2531|consen 392 LRFIFENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPL 436 (545)
T ss_pred eEEEecCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccc
Confidence 111111 333445688999999999999988776643
No 24
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=99.84 E-value=7.2e-21 Score=183.77 Aligned_cols=104 Identities=31% Similarity=0.440 Sum_probs=94.8
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
|++|||+|||++|++|||. +|++++..+.+++...+.+|+.||||++||+++++++++++++ .+...++|.+||||
T Consensus 1 y~lgiDiGTts~K~~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~aI~is 76 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE-DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQIKAIGIS 76 (245)
T ss_dssp EEEEEEECSSEEEEEEEET-TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGGEEEEEEE
T ss_pred CEEEEEEcccceEEEEEeC-CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccceeEEEEec
Confidence 4677999999999999997 9999999999999999999999999999999999999999998 77788999999999
Q ss_pred CCcceeEEeeCCCCCccccccccCCcccc
Q psy9709 105 NQRETTVVWDLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~ 133 (500)
+|++++|++|+ +|+|++|+|+|.|.|..
T Consensus 77 ~~~~~~v~~D~-~~~pl~~~i~w~D~R~~ 104 (245)
T PF00370_consen 77 GQGHGLVLLDK-DGKPLRPAILWMDTRAA 104 (245)
T ss_dssp E-SSEEEEEET-TSSBSSCEE-TT-CTTH
T ss_pred cccCCcceecc-ccccccccccccccchh
Confidence 99999999999 69999999999999973
No 25
>PRK00047 glpK glycerol kinase; Provisional
Probab=99.83 E-value=1.7e-20 Score=199.42 Aligned_cols=111 Identities=39% Similarity=0.601 Sum_probs=101.0
Q ss_pred ccccCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709 19 IQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 98 (500)
Q Consensus 19 ~~m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i 98 (500)
|||+ .+++|||+|||++|++|||. +|++++..+.+|+...+.+||+||||++||+++++++++++++ .+.++++|
T Consensus 1 ~~m~-~~~lgiD~GTts~Ka~l~d~-~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I 75 (498)
T PRK00047 1 MMMK-KYILALDQGTTSSRAIIFDH-DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQI 75 (498)
T ss_pred CCcc-CEEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHe
Confidence 3444 57788999999999999998 9999999999999888999999999999999999999999987 77778899
Q ss_pred eEEEEcCCcceeEEeeCCCCCccccccccCCccccC
Q psy9709 99 VTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN 134 (500)
Q Consensus 99 ~~Igis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~ 134 (500)
.+||||+|++++++||+++|+|++|+|+|+|.|..+
T Consensus 76 ~~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~ 111 (498)
T PRK00047 76 AAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTAD 111 (498)
T ss_pred eEEEEecCcceEEEEECCCCcCCcccceecccchHH
Confidence 999999999999999963599999999999988743
No 26
>PLN02295 glycerol kinase
Probab=99.83 E-value=2.3e-20 Score=198.77 Aligned_cols=104 Identities=47% Similarity=0.779 Sum_probs=96.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC----eeE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD----IVT 100 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~----i~~ 100 (500)
+++|||+|||++|++|||. +|++++..+.+|+..+|++||+||||++||+++++++++++++ .+.++++ |.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~-~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~~i~~~i~a 76 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR-DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEK---AAAKGHNVDSGLKA 76 (512)
T ss_pred CEEEEecCCCceEEEEECC-CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCCccccccceEE
Confidence 4677999999999999998 9999999999999999999999999999999999999999988 6666666 799
Q ss_pred EEEcCCcceeEEe-eCCCCCccccccccCCcccc
Q psy9709 101 LGITNQRETTVVW-DLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 101 Igis~~~~~~v~~-d~~~g~pl~p~i~w~d~~~~ 133 (500)
||+|+|++|+++| |+ +|+||+|+|+|+|.|..
T Consensus 77 Ig~s~q~~~~v~~dd~-~G~pl~~~i~w~D~Ra~ 109 (512)
T PLN02295 77 IGITNQRETTVAWSKS-TGRPLYNAIVWMDSRTS 109 (512)
T ss_pred EEEecCcceEEEEECC-CCCCcccceeccccchH
Confidence 9999999999999 57 79999999999998874
No 27
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=99.82 E-value=2.7e-20 Score=197.39 Aligned_cols=105 Identities=31% Similarity=0.457 Sum_probs=98.9
Q ss_pred cEEEEEecCCCcceEEEEeCCC-CcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALT-QEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~-g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
.+++|||+|||++|+++||. + |++++..+.+++..++.+||+||||++||+++++++++++++ ..+..++|.|||
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~-~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~I~aI~ 79 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDE-DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDAIAAIG 79 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeC-CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhhceEEE
Confidence 56777999999999999998 7 899999999999998999999999999999999999999988 667889999999
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~ 133 (500)
||+|+|+++++|+ +|+||+|+|+|+|.|..
T Consensus 80 is~~~~g~vllD~-~g~~L~~~i~w~D~R~~ 109 (502)
T COG1070 80 ISGQGHGLVLLDA-NGEPLRPAILWNDTRAA 109 (502)
T ss_pred EeccccceEEECC-CCCCccccceecchhhH
Confidence 9999999999999 69999999999998884
No 28
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=99.81 E-value=7.1e-20 Score=194.77 Aligned_cols=106 Identities=45% Similarity=0.717 Sum_probs=96.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCC--CeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD--DIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~--~i~~Ig 102 (500)
+++|||+|||++|++|||. +|++++..+.+++...+.+||.||||++||+++++++++++++ .+..+. +|++||
T Consensus 3 ~~lgiDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~---~~~~~~~~~I~aIg 78 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE-KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKK---LREKGPSFKIKAIG 78 (504)
T ss_pred EEEEEecCCCceEEEEECC-CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCCCccCceEEEE
Confidence 6788999999999999998 9999999999999888999999999999999999999999987 555555 799999
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCccccC
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN 134 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~ 134 (500)
||+|++++|+||+++|+||+|+|+|+|.|..+
T Consensus 79 is~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~ 110 (504)
T PTZ00294 79 ITNQRETVVAWDKVTGKPLYNAIVWLDTRTYD 110 (504)
T ss_pred eecCcceEEEEECCCCCCcccceeecchhhHH
Confidence 99999999999874599999999999988753
No 29
>PRK10331 L-fuculokinase; Provisional
Probab=99.80 E-value=1.7e-19 Score=190.28 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=93.4
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeee--eecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
+++|||+|||++|+++||. +|++++..+.+++ ...+.+||+||||++||+++++++++++++ . ...+|.+||
T Consensus 3 ~~lgID~GTt~~Ka~l~d~-~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~---~--~~~~I~~I~ 76 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDR-QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE---L--TECHIRGIT 76 (470)
T ss_pred eEEEEecCCCceEEEEEcC-CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh---C--CccceEEEE
Confidence 6778999999999999998 9999999998876 456789999999999999999999999876 3 345799999
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCccccC
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN 134 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~ 134 (500)
||+|++++++||+ +|+||+|+|+|+|.|..+
T Consensus 77 is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~ 107 (470)
T PRK10331 77 VTTFGVDGALVDK-QGNLLYPIISWKCPRTAA 107 (470)
T ss_pred EeccccceEEECC-CcCCccCceeecCCCcHH
Confidence 9999999999999 799999999999988853
No 30
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=99.79 E-value=1.9e-19 Score=192.80 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=94.7
Q ss_pred EEEEEecCCCcceEEEEe-CCCCcEEEEEEeeeee-----ecCC------CCccccCHHHHHHHHHHHHHHHHHHHHhCC
Q psy9709 25 LIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDIST-----ISPQ------EGWAEQDPMEILQAVQTTMDRAIEKLSAHG 92 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d-~~~g~~l~~~~~~~~~-----~~~~------~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~ 92 (500)
+++|||+|||++|++||| . +|++++..+.+|+. .+|. +||+||||++||+++++++++++++ .+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~-~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA-TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECC-CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cC
Confidence 577899999999999999 8 89999999999873 4564 8999999999999999999999988 77
Q ss_pred CCCCCeeEEEEcCCcceeEEeeCCCCCcccc-----------ccccCCccccC
Q psy9709 93 LSRDDIVTLGITNQRETTVVWDLNTGEPLYN-----------AIDKMPSLVYN 134 (500)
Q Consensus 93 ~~~~~i~~Igis~~~~~~v~~d~~~g~pl~p-----------~i~w~d~~~~~ 134 (500)
+++++|++||+|+|++|+|+||+ +|+||+| +|+|+|.|..+
T Consensus 78 ~~~~~I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~ 129 (536)
T TIGR01234 78 VDPADVVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQE 129 (536)
T ss_pred CCHHHEEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHH
Confidence 77788999999999999999999 6999993 99999987643
No 31
>PRK15027 xylulokinase; Provisional
Probab=99.79 E-value=3.1e-19 Score=189.07 Aligned_cols=103 Identities=27% Similarity=0.316 Sum_probs=95.1
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++|||+|||++|++|||. +|++++..+.+|+...+.+||.||||++||+++++++++++++ . ..++|.+||||+
T Consensus 2 ~lgID~GTts~Ka~l~d~-~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~---~--~~~~I~aI~is~ 75 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE-QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ---H--SLQDVKALGIAG 75 (484)
T ss_pred EEEEEecccceEEEEEcC-CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHh---C--CccceeEEEEec
Confidence 567999999999999998 9999999999999888999999999999999999999999976 3 356899999999
Q ss_pred CcceeEEeeCCCCCccccccccCCccccCC
Q psy9709 106 QRETTVVWDLNTGEPLYNAIDKMPSLVYNT 135 (500)
Q Consensus 106 ~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~ 135 (500)
|+|++++||+ +|+|++|+|+|+|.|..+.
T Consensus 76 q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~ 104 (484)
T PRK15027 76 QMHGATLLDA-QQRVLRPAILWNDGRCAQE 104 (484)
T ss_pred CCCceEEECC-CcCCccccccccCccHHHH
Confidence 9999999999 6999999999999888644
No 32
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=99.79 E-value=3.8e-19 Score=187.33 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=92.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeee--eecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~--~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
+++|||+|||++|++|||. +|++++..+.+++ ...+.+||+||||++||+++++++++++++ +.+++|.+||
T Consensus 2 ~ilgiD~GTss~K~~l~d~-~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~ 75 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR-QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIA 75 (465)
T ss_pred eEEEEecCCCcEEEEEEcC-CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEE
Confidence 5788999999999999998 9999999998865 456889999999999999999999999853 3456799999
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~ 133 (500)
+++|+++++++|+ +|+|++|+|+|+|.|..
T Consensus 76 ~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~ 105 (465)
T TIGR02628 76 VTTFGVDGAPFDK-QGNQLYPIISWKCPRTA 105 (465)
T ss_pred EeccccceEEECC-CCCCccccccccCcccH
Confidence 9999999999999 69999999999998875
No 33
>PRK04123 ribulokinase; Provisional
Probab=99.79 E-value=4.9e-19 Score=190.34 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=95.9
Q ss_pred cEEEEEecCCCcceEEEEe-CCCCcEEEEEEeeeeee------cCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy9709 24 PLIGVIDEGTRTVRFAIIS-ALTQEEVVSHSMDISTI------SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 96 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d-~~~g~~l~~~~~~~~~~------~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~ 96 (500)
.+++|||+|||++|++||| . +|+++++.+.+|+.. +|.+||+||||++||+++++++++++++ .++.+.
T Consensus 3 ~~~lgiD~GTts~Ka~l~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~ 78 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVDCA-TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDPA 78 (548)
T ss_pred cEEEEEecCCCceEEEEEECC-CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCChh
Confidence 3677899999999999999 5 899999999998743 5899999999999999999999999987 777778
Q ss_pred CeeEEEEcCCcceeEEeeCCCCCccc-----------cccccCCcccc
Q psy9709 97 DIVTLGITNQRETTVVWDLNTGEPLY-----------NAIDKMPSLVY 133 (500)
Q Consensus 97 ~i~~Igis~~~~~~v~~d~~~g~pl~-----------p~i~w~d~~~~ 133 (500)
+|.+||||+|++++++||+ +|+||+ |+|+|+|.|..
T Consensus 79 ~I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~ 125 (548)
T PRK04123 79 AVVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQ 125 (548)
T ss_pred hEEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHH
Confidence 8999999999999999999 699998 99999998763
No 34
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=99.78 E-value=1e-18 Score=185.46 Aligned_cols=106 Identities=43% Similarity=0.688 Sum_probs=98.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
+++|||+|||++|++|||. +|++++..+.+++..++.+||+||||++||+++++++++++++ .++.+++|.+|||+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~-~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~aIgis 77 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDDIAAIGIT 77 (493)
T ss_pred eEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhheeEEEEe
Confidence 5778999999999999998 9999999999999888999999999999999999999999988 77777899999999
Q ss_pred CCcceeEEeeCCCCCccccccccCCccccC
Q psy9709 105 NQRETTVVWDLNTGEPLYNAIDKMPSLVYN 134 (500)
Q Consensus 105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~ 134 (500)
+|++++|+||+++|+|++|+|+|.|.|..+
T Consensus 78 ~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~ 107 (493)
T TIGR01311 78 NQRETTVVWDKATGKPLYNAIVWQDRRTAS 107 (493)
T ss_pred cCcceEEEEECCCCcCcccceeecccchHH
Confidence 999999999973599999999999988754
No 35
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=99.77 E-value=9.2e-19 Score=187.51 Aligned_cols=104 Identities=24% Similarity=0.310 Sum_probs=96.7
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++|||+|||++|++|||. +|+++++.+.+++..++.+||+||||++||+++++++++++++ .+++.++|++|||++
T Consensus 2 ~lgID~GTts~Ka~l~d~-~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igis~ 77 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS-TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNSVKGIGFDA 77 (541)
T ss_pred EEEEEecCcCEEEEEEcC-CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhheEEEEecc
Confidence 567999999999999998 9999999999999889999999999999999999999999987 777778899999999
Q ss_pred CcceeEEeeCCCCCcc---------ccccccCCccccCC
Q psy9709 106 QRETTVVWDLNTGEPL---------YNAIDKMPSLVYNT 135 (500)
Q Consensus 106 ~~~~~v~~d~~~g~pl---------~p~i~w~d~~~~~~ 135 (500)
| +++|+||+ +|+|| +|+|+|+|.|..+.
T Consensus 78 ~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~ 114 (541)
T TIGR01315 78 T-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAE 114 (541)
T ss_pred c-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHH
Confidence 9 99999999 69999 89999999888533
No 36
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=99.77 E-value=1.7e-18 Score=184.39 Aligned_cols=103 Identities=21% Similarity=0.292 Sum_probs=95.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
+++|||+|||++|+++||. +|+++++.+.+++...+.+||.||||++||+++++++++++++ .+.+ ++|.+|||+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~-~~I~~Igis 75 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE-NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN---LEDE-DEILFVSFS 75 (505)
T ss_pred CEEEEeccccceEEEEEcC-CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh---CCCc-CceEEEEEe
Confidence 3677999999999999998 9999999999998888889999999999999999999999987 5544 679999999
Q ss_pred CCcceeEEeeCCCCCccccccccCCcccc
Q psy9709 105 NQRETTVVWDLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~ 133 (500)
+|++++++||+ +|+||+|+|+|+|.|..
T Consensus 76 ~~~~~~v~~D~-~g~pl~~~i~w~D~R~~ 103 (505)
T TIGR01314 76 TQMHSLIAFDE-NWQPLTRLITWADNRAV 103 (505)
T ss_pred cccceeEEECC-CcCCcccceeccccchH
Confidence 99999999999 69999999999998884
No 37
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=99.75 E-value=6.1e-18 Score=180.65 Aligned_cols=103 Identities=19% Similarity=0.309 Sum_probs=92.8
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeee--cCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~--~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
+++|||+|||++|+++||. +|++++..+.+|+.. .+.+||+||||++||+++++++++++++ .++.+++|.|||
T Consensus 4 ~~lgID~GTts~Ka~l~d~-~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~I~aI~ 79 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDL-NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASDIAAVS 79 (520)
T ss_pred EEEEEecCCCceEEEEECC-CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccceEEEE
Confidence 7888999999999999998 999999998887644 4678999999999999999999999987 777778899999
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~ 133 (500)
+|+|++++++||+ +|+|+.+ +.|.|.|..
T Consensus 80 ~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~ 108 (520)
T PRK10939 80 ATSMREGIVLYDR-NGTEIWA-CANVDARAS 108 (520)
T ss_pred EECCcccEEEECC-CCCEeeC-CcCCCcccH
Confidence 9999999999999 6999976 678888774
No 38
>KOG2517|consensus
Probab=99.72 E-value=3.2e-17 Score=167.64 Aligned_cols=111 Identities=37% Similarity=0.529 Sum_probs=102.3
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
.++++|||+||||+|++|||..+|+.+..++.+.....+++||.||||.++|+++++||+++.+.+...+.....|.+||
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig 84 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG 84 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence 47899999999999999999559999999999999999999999999999999999999999888655556666788899
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~ 133 (500)
|++||++.++|++.+|+|++++|.|+|.|..
T Consensus 85 v~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~ 115 (516)
T KOG2517|consen 85 VVNQREGSVLWNKRTGEPLTNIIVWMDHRAV 115 (516)
T ss_pred EEecCCceEEeecCCCCcccceEEeeccccH
Confidence 9999999999999999999999999998884
No 39
>PLN02669 xylulokinase
Probab=99.69 E-value=6.4e-17 Score=173.06 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=91.8
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeee---ecCCCCccccCHH----------HHHHHHHHHHHHHHHHHHh
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIST---ISPQEGWAEQDPM----------EILQAVQTTMDRAIEKLSA 90 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~---~~~~~g~~e~d~~----------~~~~~~~~~i~~~~~~~~~ 90 (500)
.+++|||+|||++|++|||. +|++++.++.+++. .++.+||+||||+ .||+++..+++++. +
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d~-~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~-~--- 82 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLDS-NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLA-K--- 82 (556)
T ss_pred CeEEEEecccCCeEEEEEcC-CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHH-H---
Confidence 46788999999999999998 99999999999974 3445678999998 68899999999987 4
Q ss_pred CCCCCCCeeEEEEcCCcceeEEeeCCCCCcc-------------------ccccccCCcccc
Q psy9709 91 HGLSRDDIVTLGITNQRETTVVWDLNTGEPL-------------------YNAIDKMPSLVY 133 (500)
Q Consensus 91 ~~~~~~~i~~Igis~~~~~~v~~d~~~g~pl-------------------~p~i~w~d~~~~ 133 (500)
.+.+.++|+|||+|+|+|++|+||+++|+|| +|+++|+|.|..
T Consensus 83 ~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~ 144 (556)
T PLN02669 83 EKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTT 144 (556)
T ss_pred cCCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHH
Confidence 5667789999999999999999999558887 799999998864
No 40
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=99.64 E-value=2.9e-16 Score=165.05 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=87.2
Q ss_pred EEEecCCCcceEEEEeCCC---CcEE-EEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 27 GVIDEGTRTVRFAIISALT---QEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~---g~~l-~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
+|||+|||++|++++|. + |+++ ...+.+++...+.++|.|+||+.||+++.++++++.+. ..+|.+||
T Consensus 1 ~aiD~Gtt~~k~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Ig 72 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY-ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIG 72 (454)
T ss_pred CcEeccCCchheEEEEE-cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEE
Confidence 36999999999999998 6 5676 66777788888899999999999999999999998642 34699999
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCcccc
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~~ 133 (500)
||+|++++|+||+ +|+||+|+|+|+|.|..
T Consensus 73 is~q~~~~v~~D~-~G~~l~p~i~w~D~R~~ 102 (454)
T TIGR02627 73 IDTWGVDFVLLDQ-NGQRVGDPVSYRDSRTD 102 (454)
T ss_pred EeccceeEEEEcC-CCCCccCceecCCCCCH
Confidence 9999999999999 69999999999998885
No 41
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=99.63 E-value=4.4e-16 Score=158.05 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=99.8
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.|++|||+||.|.|++|||..+|++|+++..||+...+..+..||+++++|++++.+++.++++ +++++.+|+||||
T Consensus 3 ~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gIGv 79 (544)
T COG1069 3 AYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGIGV 79 (544)
T ss_pred cEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEEEE
Confidence 4666799999999999999855999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCcceeEEeeCCCCCccc---------cccccCCccccCCC
Q psy9709 104 TNQRETTVVWDLNTGEPLY---------NAIDKMPSLVYNTP 136 (500)
Q Consensus 104 s~~~~~~v~~d~~~g~pl~---------p~i~w~d~~~~~~t 136 (500)
+++ +|+|++|+ +|+|+. ++|.|+|+|..++.
T Consensus 80 DaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EA 119 (544)
T COG1069 80 DAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEA 119 (544)
T ss_pred cce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHH
Confidence 999 99999999 699883 48899999997665
No 42
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=99.63 E-value=9.3e-16 Score=162.76 Aligned_cols=100 Identities=31% Similarity=0.408 Sum_probs=95.3
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
|||+|||++|++|+|. +|+++++.+.+++..++.+||.||||++||+++++++++++++ .++++++|.|||+++|+
T Consensus 2 gIDiGtt~ik~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~I~gIgvs~~~ 77 (481)
T TIGR01312 2 GIDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQDIKGIGISGQM 77 (481)
T ss_pred ceeecCcceEEEEECC-CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEecCC
Confidence 6999999999999998 9999999999999888999999999999999999999999987 77778899999999999
Q ss_pred ceeEEeeCCCCCccccccccCCccc
Q psy9709 108 ETTVVWDLNTGEPLYNAIDKMPSLV 132 (500)
Q Consensus 108 ~~~v~~d~~~g~pl~p~i~w~d~~~ 132 (500)
+++|+||+ +|+|++|+++|.|.|.
T Consensus 78 ~g~v~~d~-~g~~l~~~i~W~D~r~ 101 (481)
T TIGR01312 78 HGLVLLDA-NGEVLRPAILWNDTRT 101 (481)
T ss_pred ceeEEECC-CcCCCccchhhhccch
Confidence 99999998 7999999999999887
No 43
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.56 E-value=7.3e-15 Score=137.07 Aligned_cols=100 Identities=36% Similarity=0.656 Sum_probs=84.1
Q ss_pred CCceeeechhhhchhHHHHHHHHHcCC------CCC-HHHHHH--HHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEEc
Q psy9709 401 ATPIYALEGSIAVAGAAVKWLRDNLNL------MDN-VRETES--LAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICG 471 (500)
Q Consensus 401 ~p~~~~~~g~~~~~G~~~~w~~~~~~~------~~~-~~~l~~--~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~G 471 (500)
.|+.|.++++++++|.+++|+++.++. ..+ ++.+.. ..+..+++.+++|+|+|.|+|+|++|+++||+|+|
T Consensus 34 ~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~g 113 (198)
T PF02782_consen 34 IPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAELEAAASPPGSGGVFFLPFLSGERSPYWDPDARGSFIG 113 (198)
T ss_dssp SEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHHHHHHHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEE
T ss_pred CCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHHHHhhhccCcccceeeeeccccCccccccccccccccc
Confidence 567899999999999999999999743 111 133332 22333488899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q psy9709 472 MTQFTTKGHIIRAALEAICFQTRDILELY 500 (500)
Q Consensus 472 l~~~~~~~~l~rAv~Egia~~~~~~~~~~ 500 (500)
++.+|+++|++||++||++|.+|++++.|
T Consensus 114 l~~~~~~~~~~rAv~Egia~~~~~~~~~l 142 (198)
T PF02782_consen 114 LSSDTTRADLARAVLEGIAFSLRQILEEL 142 (198)
T ss_dssp EETTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHhHHHHHHHhhhhc
Confidence 99999999999999999999999999864
No 44
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.97 E-value=2.8e-09 Score=103.01 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=81.0
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++|||+|||++|+++|| +|++++..+. ||+.||+.+++++++++++ .+.+..+|.+|++|+
T Consensus 2 ~lGIDiGtts~K~vl~d--~g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~---~~~~~~~i~~i~~Tg 62 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLME--DGKVIGYKWL--------------DTTPVIEETARAILEALKE---AGIGLEPIDKIVATG 62 (248)
T ss_pred EEEEEcChhheEEEEEc--CCEEEEEEEe--------------cCCCCHHHHHHHHHHHHHH---cCCChhheeEEEEEC
Confidence 56799999999999998 5899987764 4556889999999999877 777888999999999
Q ss_pred CcceeEEeeCCCCCccccccccCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 106 QRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 106 ~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
|++++|+. . + .-+..+..-. .-. .++ . ...+ ..||||++.+|+..++ + |++..
T Consensus 63 ~~~~~v~~-~-~-~~~~ei~~~~-~g~----~~~--~-------~~~~--~vidiGgqd~k~i~~~-~-g~~~~ 115 (248)
T TIGR00241 63 YGRHKVGF-A-D-KIVTEISCHG-KGA----NYL--A-------PEAR--GVIDIGGQDSKVIKID-D-GKVDD 115 (248)
T ss_pred CCcccccc-c-C-CceEEhhHHH-HHH----HHH--C-------CCCC--EEEEecCCeeEEEEEC-C-CcEee
Confidence 99999874 3 1 1111111000 000 011 0 0111 3599999999999999 5 88763
No 45
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=98.91 E-value=3.6e-09 Score=111.69 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=67.5
Q ss_pred EEEeCCCCcEEEEE---EeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCcceeEEeeC
Q psy9709 39 AIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 115 (500)
Q Consensus 39 ~v~d~~~g~~l~~~---~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~~~~v~~d~ 115 (500)
+-||. +|+.+... +++. ...+.+++.++||+.||+++.++++++... .++|.+||||+|++++++||+
T Consensus 3 ~~~~~-~~~~~~~~e~~r~~~-~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~-------~~~I~~Igis~q~~~~v~lD~ 73 (471)
T PRK10640 3 ARYER-ECRSLTLREIHRFNN-GLHSQDGFDTWDVDSLESAIRLGLNKVCEE-------GIRIDSIGIDTWGVDYVLLDK 73 (471)
T ss_pred eEEcC-CCceEEEEEEEecCC-CCeeeCCeeEECHHHHHHHHHHHHHHHhhc-------CCCccEEEEcCCcccEEEECC
Confidence 45665 45555433 2322 344678999999999999999999888542 467999999999999999999
Q ss_pred CCCCccccccccCCcccc
Q psy9709 116 NTGEPLYNAIDKMPSLVY 133 (500)
Q Consensus 116 ~~g~pl~p~i~w~d~~~~ 133 (500)
+|+||+|+|+|+|.|..
T Consensus 74 -~G~pL~pai~w~D~Ra~ 90 (471)
T PRK10640 74 -QGQRVGLPVSYRDSRTD 90 (471)
T ss_pred -CCCCcCCceeccCCCCH
Confidence 69999999999998873
No 46
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.41 E-value=5.3e-07 Score=87.09 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=57.7
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 233 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs 233 (500)
+++|||+|||++|++++| + |++++..+. +++.||+.+.+++++++++ .+.+..+|.+|++|
T Consensus 1 ~~lGIDiGtts~K~vl~d-~-g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~---~~~~~~~i~~i~~T 61 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-D-GKVIGYKWL--------------DTTPVIEETARAILEALKE---AGIGLEPIDKIVAT 61 (248)
T ss_pred CEEEEEcChhheEEEEEc-C-CEEEEEEEe--------------cCCCCHHHHHHHHHHHHHH---cCCChhheeEEEEE
Confidence 478999999999999999 6 998876643 4556788888888888865 46667889999999
Q ss_pred CCCceeEEE
Q psy9709 234 NQRETTVVW 242 (500)
Q Consensus 234 ~~~~~~v~~ 242 (500)
++++++++.
T Consensus 62 g~~~~~v~~ 70 (248)
T TIGR00241 62 GYGRHKVGF 70 (248)
T ss_pred CCCcccccc
Confidence 999888774
No 47
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.88 E-value=0.00014 Score=69.72 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=71.4
Q ss_pred EEEEEecCCCcceEEEEeCCCCcE-EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~-l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
+.+|||+|+|++|++|+|. +++. .......++.. ..+| .++..+++++++++ .+++..+|.+|+.
T Consensus 2 ~~~GIDiGStttK~Vlid~-~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~l~~~~~~---~g~~~~~i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV-DGDKEECLAKRNDRIR-------QRDP---FKLAEDAYDDLLEE---AGLAAADVAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEec-CCCeeEEEEEEEecCC-------CCCH---HHHHHHHHHHHHHH---cCCChhheEEEEE
Confidence 4567999999999999995 4542 22223223211 1133 33456677777766 7777789999999
Q ss_pred cCCcceeEEeeCCCCCccccccccCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCCeEEEE
Q psy9709 104 TNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVS 180 (500)
Q Consensus 104 s~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~ 180 (500)
|+.+......|+ . ++. | .+|.+-+.| .....-..||||++-+|++.+|.+ |++...
T Consensus 68 TGYGR~~~~a~~---~-vtE-I-----t~ha~GA~~----------~~p~~~tIiDIGGQD~K~I~~~~~-G~v~~f 123 (262)
T TIGR02261 68 TGEGESLAFHTG---H-FYS-M-----TTHARGAIY----------LNPEARAVLDIGALHGRAIRMDER-GKVEAY 123 (262)
T ss_pred ECCchhhhhhcC---C-eeE-E-----eHHHHHHHH----------HCCCCCEEEEeCCCceEEEEEcCC-CcEeeE
Confidence 998765522222 1 111 1 111111111 000112359999999999999974 988643
No 48
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.88 E-value=0.00014 Score=70.71 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=71.7
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
+.+|||+|+|++|++|+|. ++++.....++. .+|. +...+++++++++ .++..+++..+++|
T Consensus 33 ~~~GIDiGStt~K~Vlld~--~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~---~g~~~~~v~~~~~T 94 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD--GELYGYNSMRTG----------NNSP---DSAKNALQGIMDK---IGMKLEDINYVVGT 94 (293)
T ss_pred EEEEEEeCchhEEEEEEeC--CEEEEEEeecCC----------CCHH---HHHHHHHHHHHHH---cCCcccceEEEEEE
Confidence 5677999999999999994 566655444332 1232 2456677777776 67767789999998
Q ss_pred CCcceeEEeeCCCCCccccccccCCccccCCC-----CCCCCCCCCcccccc-CCEEEEEeccCCCceEEEEeCCCCeEE
Q psy9709 105 NQRETTVVWDLNTGEPLYNAIDKMPSLVYNTP-----PEPSSNTNNNSIQTQ-VPLIGVIDEGTRTVRFAIISALTQEEV 178 (500)
Q Consensus 105 ~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t-----~~~~~~~~n~~~~~~-~~~~lgIDiGTts~k~~l~d~~~G~vi 178 (500)
+.+.-.++. . |.-+.|-+ +.| .. ...-..||||++-+|++.+|.+ |++.
T Consensus 95 GyGr~~~~~-a-------------~~~v~EItaha~Ga~~----------~~pp~v~tIIDIGGQDsK~I~~d~~-G~v~ 149 (293)
T TIGR03192 95 GYGRVNVPF-A-------------HKAITEIACHARGANY----------MGGNAVRTILDMGGQDCKAIHCDEK-GKVT 149 (293)
T ss_pred Ccchhhcch-h-------------hcceeeHHHHHHHHHH----------hcCCCCCEEEEeCCCceEEEEEcCC-CcEe
Confidence 877544432 1 11111111 111 00 0122459999999999999974 9876
Q ss_pred EE
Q psy9709 179 VS 180 (500)
Q Consensus 179 ~~ 180 (500)
..
T Consensus 150 dF 151 (293)
T TIGR03192 150 NF 151 (293)
T ss_pred ee
Confidence 43
No 49
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.62 E-value=0.00038 Score=70.48 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=74.6
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
+.+.+|||+|+|++|++++|. ++++.....++. ++ .+...+++++++++ .+++.++|.+|+
T Consensus 143 ~g~~lGIDiGSTttK~Vl~dd--~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~di~~i~ 203 (404)
T TIGR03286 143 EGLTLGIDSGSTTTKAVVMED--NEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLEDVEAIG 203 (404)
T ss_pred CCEEEEEEcChhheeeEEEcC--CeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccceeEEE
Confidence 346778999999999999984 688877655431 12 33456677777766 788888999999
Q ss_pred EcCCcceeEE--eeCCCCCccccccccCCccccCCC-----CCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 103 ITNQRETTVV--WDLNTGEPLYNAIDKMPSLVYNTP-----PEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 103 is~~~~~~v~--~d~~~g~pl~p~i~w~d~~~~~~t-----~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
+|+.+...+. .+. |.-..|-+ +.| .. +.....-..||||++-.|++.++ +|
T Consensus 204 ~TGyGR~~i~~~~~a-------------d~iv~EItaha~GA~~-L~------p~~~~v~TIIDIGGQDsK~I~l~--~G 261 (404)
T TIGR03286 204 TTGYGRFTIGEHFGA-------------DLIQEELTVNSKGAVY-LA------DKQEGPATVIDIGGMDNKAISVW--DG 261 (404)
T ss_pred eeeecHHHHhhhcCC-------------CceEEEEhhHHHHHHH-hc------ccCCCCcEEEEeCCCceEEEEEc--CC
Confidence 9998877764 222 11111111 111 00 00011235699999999999885 48
Q ss_pred eEEE
Q psy9709 176 EEVV 179 (500)
Q Consensus 176 ~vi~ 179 (500)
++..
T Consensus 262 ~v~d 265 (404)
T TIGR03286 262 IPDN 265 (404)
T ss_pred ceee
Confidence 7753
No 50
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.59 E-value=0.00039 Score=67.50 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=58.9
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
++|||+|.|++|++++|.. |+++.+.+.+++ ..+++++.+.+.+++++.... ...+.+|||+.
T Consensus 2 ~lgidiggt~i~~~l~d~~-g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDEN-LQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGVQGSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECCC-CCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCCceEEEEe
Confidence 6899999999999999985 999977766543 135677777777777665421 12345888888
Q ss_pred CCceeEEEeCCCCccccccee-eccCCC
Q psy9709 235 QRETTVVWDLNTGEPLYNAIV-WSDTRA 261 (500)
Q Consensus 235 ~~~~~v~~d~~~G~~l~~~i~-w~D~r~ 261 (500)
++ ++|.++|....+.+. |.+..-
T Consensus 65 pG----~vd~~~g~i~~~~~~~w~~~~l 88 (256)
T PRK13311 65 PG----LPNADDGTVFTANVPSAMGQPL 88 (256)
T ss_pred cC----cEECCCCEEEccCCCcccCCCh
Confidence 77 778744554444343 655443
No 51
>KOG2531|consensus
Probab=97.58 E-value=0.00019 Score=72.24 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=65.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCC-----------CccccCHH-HHHHHHHHHHHHHHHHHHhCC
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-----------GWAEQDPM-EILQAVQTTMDRAIEKLSAHG 92 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~-----------g~~e~d~~-~~~~~~~~~i~~~~~~~~~~~ 92 (500)
..+|+|++|+.+|++++|. +++|+......++...|+- |..-..|- .|.+|+--. +++|++++
T Consensus 10 ~fLG~DlSTQqlKaviids-~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDll----l~kl~~~~ 84 (545)
T KOG2531|consen 10 SFLGFDLSTQQLKAVIIDS-NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLL----LDKLREAG 84 (545)
T ss_pred eeeeeecccceeEEEEEcC-CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHH----HHHHHHcC
Confidence 3567999999999999998 9999999988876544331 23333454 666655444 44444478
Q ss_pred CCCCCeeEEEEcCCcceeEEeeCC
Q psy9709 93 LSRDDIVTLGITNQRETTVVWDLN 116 (500)
Q Consensus 93 ~~~~~i~~Igis~~~~~~v~~d~~ 116 (500)
.+..+|.||+=++|.|+.|.|-+.
T Consensus 85 ~d~~kV~aiSGagQQHGsVyWs~g 108 (545)
T KOG2531|consen 85 FDLSKVMAISGAGQQHGSVYWSKG 108 (545)
T ss_pred CCHHHhhhhcccccccceeeehhh
Confidence 888999999999999999999884
No 52
>PRK09698 D-allose kinase; Provisional
Probab=97.57 E-value=0.00059 Score=67.91 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=62.8
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 230 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I 230 (500)
+..+++|||+|.|++|++++|.. |+++...+.+++. ..+++. .+.+.+.+++++++. + .++.+|
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~~-g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~~---~---~~i~gi 65 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDAE-GEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRRF---N---ARCHGI 65 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcCC-CCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHHc---C---CCeeEE
Confidence 56789999999999999999985 9999876655431 123333 666777777777642 1 478999
Q ss_pred EEcCCCceeEEEeCCCCccc-cccee---eccCCC
Q psy9709 231 GITNQRETTVVWDLNTGEPL-YNAIV---WSDTRA 261 (500)
Q Consensus 231 ~vs~~~~~~v~~d~~~G~~l-~~~i~---w~D~r~ 261 (500)
||+.++ ++|.++|..+ .|.+. |.+..-
T Consensus 66 gia~pG----~vd~~~g~i~~~~~~~~~~~~~~~l 96 (302)
T PRK09698 66 VMGFPA----LVSKDRRTVISTPNLPLTALDLYDL 96 (302)
T ss_pred EEeCCc----ceeCCCCEEEecCCCCccccccCCH
Confidence 999887 7887434433 34454 554443
No 53
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.00059 Score=68.30 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=62.4
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.+++|||+|+|++|++++|. +|+++.+.+.+++.. .+.+.+.+.+.+.+++++++ .+ ...++.+||+
T Consensus 6 ~~~lgidIggt~i~~~l~d~-~g~~l~~~~~~~~~~--------~~~~~~~~~i~~~i~~~~~~---~~-~~~~~iGIgi 72 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDL-DGEILLRERIPTPTP--------DPEEAILEAILALVAELLKQ---AQ-GRVAIIGIGI 72 (314)
T ss_pred cEEEEEEecCCEEEEEEECC-CCcEEEEEEEecCCC--------CchhHHHHHHHHHHHHHHHh---cC-CcCceEEEEe
Confidence 36777999999999999998 999999988888622 23357888888888888876 43 3456778887
Q ss_pred cCCcceeEEeeCCCC-CccccccccC
Q psy9709 104 TNQRETTVVWDLNTG-EPLYNAIDKM 128 (500)
Q Consensus 104 s~~~~~~v~~d~~~g-~pl~p~i~w~ 128 (500)
++.+ .+|. .. ....|.+.|.
T Consensus 73 ~~pg----~~~~-~~~~~~~~~~~~~ 93 (314)
T COG1940 73 PGPG----DVDN-GTVIVPAPNLGWW 93 (314)
T ss_pred ccce----eccC-CcEEeecCCCCcc
Confidence 7644 4455 12 3345555554
No 54
>PRK09698 D-allose kinase; Provisional
Probab=97.51 E-value=0.00062 Score=67.75 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=57.1
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.+++|||+|+|++|++++|. +|+++.+.+.+++. ..+++. .+.+.+.+++++++ .+ .++.+|||
T Consensus 4 ~~~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~---~~---~~i~gigi 67 (302)
T PRK09698 4 NVVLGIDMGGTHIRFCLVDA-EGEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRR---FN---ARCHGIVM 67 (302)
T ss_pred cEEEEEEcCCcEEEEEEEcC-CCCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHH---cC---CCeeEEEE
Confidence 46777999999999999998 99999877665531 123444 77888888888776 32 57999999
Q ss_pred cCCcceeEEeeCCCCC
Q psy9709 104 TNQRETTVVWDLNTGE 119 (500)
Q Consensus 104 s~~~~~~v~~d~~~g~ 119 (500)
+..+ ++|.+.|.
T Consensus 68 a~pG----~vd~~~g~ 79 (302)
T PRK09698 68 GFPA----LVSKDRRT 79 (302)
T ss_pred eCCc----ceeCCCCE
Confidence 9877 56774343
No 55
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.43 E-value=0.00066 Score=65.91 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=55.6
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++|||+|+|++|++++|. +|+++.+.+.+++ ..+++++.+.+.+.+++.... ...+.+|||+.
T Consensus 2 ~lgidiggt~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~~ 64 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDE-NLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGVQGSVGIGI 64 (256)
T ss_pred EEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCCceEEEEe
Confidence 466999999999999998 9999987776543 135677787777777666432 12345788886
Q ss_pred CcceeEEeeCCCCCccccccc-cC
Q psy9709 106 QRETTVVWDLNTGEPLYNAID-KM 128 (500)
Q Consensus 106 ~~~~~v~~d~~~g~pl~p~i~-w~ 128 (500)
.+ ++|.++|....+.+. |.
T Consensus 65 pG----~vd~~~g~i~~~~~~~w~ 84 (256)
T PRK13311 65 PG----LPNADDGTVFTANVPSAM 84 (256)
T ss_pred cC----cEECCCCEEEccCCCccc
Confidence 66 567644554333333 54
No 56
>PRK09557 fructokinase; Reviewed
Probab=97.42 E-value=0.0008 Score=66.96 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=59.3
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 233 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs 233 (500)
+.+|||+|.|++|++++|.+ |+++...+.+++ .++++++.+.+.+.+++...+ ...+.+||++
T Consensus 1 ~~lgidig~t~~~~~l~d~~-g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgi~ 63 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDA-GEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA-------TGQRGTVGVG 63 (301)
T ss_pred CEEEEEECCCcEEEEEECCC-CCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh-------cCCceEEEec
Confidence 36899999999999999985 999877655543 135677777777777766542 1346789999
Q ss_pred CCCceeEEEeCCCCcccccceeec
Q psy9709 234 NQRETTVVWDLNTGEPLYNAIVWS 257 (500)
Q Consensus 234 ~~~~~~v~~d~~~G~~l~~~i~w~ 257 (500)
.++ ++|+++|....+...|.
T Consensus 64 ~pG----~vd~~~g~i~~~~~~~~ 83 (301)
T PRK09557 64 IPG----SISPYTGLVKNANSTWL 83 (301)
T ss_pred Ccc----cCcCCCCeEEecCCccc
Confidence 887 77865576555445573
No 57
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.41 E-value=0.00066 Score=68.04 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=63.8
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
|||+|+|++|++++|. +|+++.+.+.+.+ .+++++.+.+.+.+++++++ .+....+|.+|||+..+
T Consensus 2 gidig~t~~~~~l~d~-~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 2 GVDIGGTTIKLGVVDE-EGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGAPG 67 (318)
T ss_pred EEEeCCCEEEEEEECC-CCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEeccc
Confidence 6999999999999998 8999987655432 25788999999999998877 66667789999999766
Q ss_pred ceeEEeeCCCCCccc-cccccCC
Q psy9709 108 ETTVVWDLNTGEPLY-NAIDKMP 129 (500)
Q Consensus 108 ~~~v~~d~~~g~pl~-p~i~w~d 129 (500)
++|.++|.... |..-|.+
T Consensus 68 ----~vd~~~g~~~~~~~~~w~~ 86 (318)
T TIGR00744 68 ----PVNRQRGTVYFAVNLDWKQ 86 (318)
T ss_pred ----cccCCCCEEEecCCCCCCC
Confidence 55764455322 3334754
No 58
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.41 E-value=0.00079 Score=67.05 Aligned_cols=89 Identities=12% Similarity=0.021 Sum_probs=61.7
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
++|||+|.|++|++++|.. |+++...+.+++ ..+++++.+.+.+.+++.... ...+.+|||+.
T Consensus 2 ~lgidig~t~i~~~l~d~~-g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEK-LELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR-------FGCKGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCC-CcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCcceEEEeC
Confidence 5899999999999999985 999877655443 135778888888877776532 12345788888
Q ss_pred CCceeEEEeCCCCccccccee-eccCCCHHH
Q psy9709 235 QRETTVVWDLNTGEPLYNAIV-WSDTRADNI 264 (500)
Q Consensus 235 ~~~~~v~~d~~~G~~l~~~i~-w~D~r~~~~ 264 (500)
++ ++|.++|....+.+. |.+..-.++
T Consensus 65 pG----~vd~~~g~~~~~~~~~w~~~~l~~~ 91 (303)
T PRK13310 65 PG----MPETEDGTLYAANVPAASGKPLRAD 91 (303)
T ss_pred CC----cccCCCCEEeccCcccccCCcHHHH
Confidence 87 778745665555554 665554433
No 59
>PRK09557 fructokinase; Reviewed
Probab=97.40 E-value=0.00064 Score=67.66 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=59.2
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
.+|||+|+|++|++++|. +|+++.+.+.+++ .++++++.+.+.+.++++.+. . ..+.+|||+.
T Consensus 2 ~lgidig~t~~~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~~~gIgi~~ 64 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDD-AGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA---T----GQRGTVGVGI 64 (301)
T ss_pred EEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh---c----CCceEEEecC
Confidence 456999999999999998 8999987665543 136777888888877777543 2 3567899987
Q ss_pred CcceeEEeeCCCCCccccccccC
Q psy9709 106 QRETTVVWDLNTGEPLYNAIDKM 128 (500)
Q Consensus 106 ~~~~~v~~d~~~g~pl~p~i~w~ 128 (500)
.+ ++|.++|....+...|.
T Consensus 65 pG----~vd~~~g~i~~~~~~~~ 83 (301)
T PRK09557 65 PG----SISPYTGLVKNANSTWL 83 (301)
T ss_pred cc----cCcCCCCeEEecCCccc
Confidence 76 56764566554444563
No 60
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.37 E-value=0.0017 Score=64.41 Aligned_cols=115 Identities=20% Similarity=0.215 Sum_probs=72.1
Q ss_pred cCcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 22 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 101 (500)
Q Consensus 22 ~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I 101 (500)
...+.+|||.|+|.+|+++.+. ++.++......++ | .|. ..+++++++++ .+....+|.++
T Consensus 133 ~~~~~LGID~GSTtTK~VLm~d-~~~I~~~~~~~t~------g----~p~-----~~~~l~~~le~---l~~~~~~I~~~ 193 (396)
T COG1924 133 QGMYTLGIDSGSTTTKAVLMED-GKEILYGFYVSTK------G----RPI-----AEKALKEALEE---LGEKLEEILGL 193 (396)
T ss_pred cCcEEEEEecCCcceeEEEEeC-CCeEEEEEEEcCC------C----Chh-----HHHHHHHHHHH---cccChheeeee
Confidence 3456788999999999999996 5545544443332 1 222 25566666666 55566899999
Q ss_pred EEcCCcceeEEeeCCCCCccccccccCCccccCCC------CCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 102 GITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTP------PEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 102 gis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t------~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
|+|+.+...+- .-.-.|.-..|-+ .|| . ...+ ..||||++=+|++-++ + |
T Consensus 194 ~~TGYGR~~v~-----------~~~~aD~~~~Ei~ah~kgA~~f--~-------p~~d--tIiDIGGQD~K~i~i~-d-G 249 (396)
T COG1924 194 GVTGYGRNLVG-----------AALGADKVVVEISAHAKGARYF--A-------PDVD--TVIDIGGQDSKVIKLE-D-G 249 (396)
T ss_pred eeecccHHHhh-----------hhhcCCcceeeeehhHHHHHHh--C-------CCCc--EEEEecCcceeEEEEe-C-C
Confidence 99998866553 1111222222222 333 1 1111 4599999999999998 4 8
Q ss_pred eEEE
Q psy9709 176 EEVV 179 (500)
Q Consensus 176 ~vi~ 179 (500)
.+..
T Consensus 250 ~v~d 253 (396)
T COG1924 250 KVDD 253 (396)
T ss_pred eeee
Confidence 7664
No 61
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.37 E-value=0.001 Score=66.74 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=65.1
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 235 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~ 235 (500)
+|||+|.|++|++++|.. |+++...+.+.+ .+++++.+.+.+.+++++++ .+....++.+|||+.+
T Consensus 1 lgidig~t~~~~~l~d~~-g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEE-GNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCC-CCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEecc
Confidence 589999999999999985 999876655432 25778888888888888765 3445568999999988
Q ss_pred CceeEEEeCCCCcccc-cceeeccCCCH
Q psy9709 236 RETTVVWDLNTGEPLY-NAIVWSDTRAD 262 (500)
Q Consensus 236 ~~~~v~~d~~~G~~l~-~~i~w~D~r~~ 262 (500)
+ ++|.++|.... |.+.|.+..-.
T Consensus 67 G----~vd~~~g~~~~~~~~~w~~~~l~ 90 (318)
T TIGR00744 67 G----PVNRQRGTVYFAVNLDWKQEPLK 90 (318)
T ss_pred c----cccCCCCEEEecCCCCCCCCCHH
Confidence 7 77864465433 44458765433
No 62
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.36 E-value=0.001 Score=60.66 Aligned_cols=87 Identities=21% Similarity=0.346 Sum_probs=66.5
Q ss_pred EEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCC
Q psy9709 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 236 (500)
Q Consensus 157 gIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~~ 236 (500)
|||+|+++++++++|.+ |+++...+.+++ .+++++.+.+.+.++++..+. ... +|||+.++
T Consensus 1 gidig~~~i~~~l~d~~-g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~-------~~~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLD-GEIIYSESIPTP----------TSPEELLDALAELIERLLADY-------GRS-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETT-SCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHH-------TCE-EEEEEESS
T ss_pred CEEECCCEEEEEEECCC-CCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhc-------ccc-cEEEeccc
Confidence 79999999999999985 999988777664 478889999999999988764 122 88999888
Q ss_pred ceeEEEeCCCCcccc-cceeeccCCCHHHHH
Q psy9709 237 ETTVVWDLNTGEPLY-NAIVWSDTRADNIVD 266 (500)
Q Consensus 237 ~~~v~~d~~~G~~l~-~~i~w~D~r~~~~~~ 266 (500)
++|.+.|..+. |...|.+.+-.+.++
T Consensus 62 ----~v~~~~g~i~~~~~~~~~~~~l~~~l~ 88 (179)
T PF00480_consen 62 ----IVDSEKGRIISSPNPGWENIPLKEELE 88 (179)
T ss_dssp ----EEETTTTEEEECSSGTGTTCEHHHHHH
T ss_pred ----cCcCCCCeEEecCCCCcccCCHHHHhh
Confidence 89985445554 555688866544443
No 63
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.0014 Score=65.59 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=64.9
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 229 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~ 229 (500)
.+..+++|||||.|++|++++|.. |+++...+.+++.. .+.+.+.+.+.+.++++.++. + ....+.+
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~-g~~l~~~~~~~~~~--------~~~~~~~~~i~~~i~~~~~~~---~-~~~~~iG 69 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLD-GEILLRERIPTPTP--------DPEEAILEAILALVAELLKQA---Q-GRVAIIG 69 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCC-CcEEEEEEEecCCC--------CchhHHHHHHHHHHHHHHHhc---C-CcCceEE
Confidence 345689999999999999999985 99998887877631 222467777777777777642 2 3455778
Q ss_pred EEEcCCCceeEEEeCCCC-cccccceeecc-CCCHHH
Q psy9709 230 LGITNQRETTVVWDLNTG-EPLYNAIVWSD-TRADNI 264 (500)
Q Consensus 230 I~vs~~~~~~v~~d~~~G-~~l~~~i~w~D-~r~~~~ 264 (500)
||+++++ .+|. .. ....|.+.|.+ ..-.+.
T Consensus 70 Igi~~pg----~~~~-~~~~~~~~~~~~~~~~~l~~~ 101 (314)
T COG1940 70 IGIPGPG----DVDN-GTVIVPAPNLGWWNGVDLAEE 101 (314)
T ss_pred EEeccce----eccC-CcEEeecCCCCccccccHHHH
Confidence 8887665 6665 22 22235555544 334333
No 64
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.29 E-value=0.001 Score=66.25 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=58.1
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++|||+|+|++|++++|. +|+++.+.+.+++ ..+++++.+.+.+.++++... . ..+.+|||+.
T Consensus 2 ~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~----~~~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNE-KLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR---F----GCKGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECC-CCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh---c----CCcceEEEeC
Confidence 467999999999999998 8999987765443 135788888888888877543 2 2345788887
Q ss_pred CcceeEEeeCCCCCccccccc-cC
Q psy9709 106 QRETTVVWDLNTGEPLYNAID-KM 128 (500)
Q Consensus 106 ~~~~~v~~d~~~g~pl~p~i~-w~ 128 (500)
.+ ++|.++|....+.+. |.
T Consensus 65 pG----~vd~~~g~~~~~~~~~w~ 84 (303)
T PRK13310 65 PG----MPETEDGTLYAANVPAAS 84 (303)
T ss_pred CC----cccCCCCEEeccCccccc
Confidence 66 567645655444444 54
No 65
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.00083 Score=65.05 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=52.4
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 101 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I 101 (500)
.|++|||-|+|++++.|.|. +|+++.+....-..+ ....+++-+..+.+++.+.+.+ ++.++++|.++
T Consensus 5 ~~~lGVDGGGTkt~a~l~~~-~g~vlg~g~sGpAN~------~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~i~~~ 72 (301)
T COG2971 5 PYFLGVDGGGTKTRAVLADE-DGNVLGRGKSGPANI------QLVGKEEAVRNIKDAIREALDE---AGLKPDEIAAI 72 (301)
T ss_pred cEEEEEccCCcceEEEEEcC-CCcEEEEeccCCcee------cccchHHHHHHHHHHHHHHHHh---cCCCHHHhCce
Confidence 56777999999999999997 999999875332211 2223488999999999999887 88888876554
No 66
>PRK12408 glucokinase; Provisional
Probab=97.09 E-value=0.0007 Score=68.42 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=45.0
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcE------EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEE------VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD 97 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~------l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 97 (500)
..++++|||+|++|++++|. +|++ +...+.+++ .++.+.+.+++++++ ..+
T Consensus 16 ~~~L~~DIGGT~i~~al~d~-~g~~~~~~~~~~~~~~~t~---------------~~~~~~~~i~~~~~~-------~~~ 72 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCA-SPDAAKPVELLDYRTYRCA---------------DYPSLAAILADFLAE-------CAP 72 (336)
T ss_pred ccEEEEEcChhhhheeEEec-cCCccccccccceeEecCC---------------CccCHHHHHHHHHhc-------CCC
Confidence 34677999999999999997 7773 333222221 112244445555432 124
Q ss_pred eeEEEEcCCcceeEEeeCCCCCccccccccC
Q psy9709 98 IVTLGITNQRETTVVWDLNTGEPLYNAIDKM 128 (500)
Q Consensus 98 i~~Igis~~~~~~v~~d~~~g~pl~p~i~w~ 128 (500)
+.+|||+.-+. . ++. |....+-+.|.
T Consensus 73 ~~~igIg~pG~-~--~~~--g~v~~~nl~w~ 98 (336)
T PRK12408 73 VRRGVIASAGY-A--LDD--GRVITANLPWT 98 (336)
T ss_pred cCEEEEEecCC-c--eEC--CEEEecCCCCc
Confidence 77888886664 1 333 66555445674
No 67
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=97.06 E-value=0.0022 Score=52.23 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=25.7
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeee
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDI 56 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~ 56 (500)
++|||+|+|.+|++++|. +|+++...+.+.
T Consensus 3 ilgiD~Ggt~i~~a~~d~-~g~~~~~~~~~~ 32 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE-TGKLADPLEVIP 32 (99)
T ss_pred EEEEccCCCeEEEEEECC-CCCEecCEEEEE
Confidence 567999999999999998 899998766544
No 68
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.04 E-value=0.0024 Score=58.23 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=62.8
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
|||+|+++++++++|. +|+++.+.+.+++ .+++++.+.+.+.++++..+ .+ .. +|||+..+
T Consensus 1 gidig~~~i~~~l~d~-~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~----~~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL-DGEIIYSESIPTP----------TSPEELLDALAELIERLLAD---YG----RS-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEET-TSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHH---HT----CE-EEEEEESS
T ss_pred CEEECCCEEEEEEECC-CCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhh---cc----cc-cEEEeccc
Confidence 6999999999999998 9999998887764 47899999999999999877 22 22 88888777
Q ss_pred ceeEEeeCCCCCcc-ccccccCCccc
Q psy9709 108 ETTVVWDLNTGEPL-YNAIDKMPSLV 132 (500)
Q Consensus 108 ~~~v~~d~~~g~pl-~p~i~w~d~~~ 132 (500)
++|.+.|..+ .|...|.+-..
T Consensus 62 ----~v~~~~g~i~~~~~~~~~~~~l 83 (179)
T PF00480_consen 62 ----IVDSEKGRIISSPNPGWENIPL 83 (179)
T ss_dssp ----EEETTTTEEEECSSGTGTTCEH
T ss_pred ----cCcCCCCeEEecCCCCcccCCH
Confidence 7888533333 34455765333
No 69
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=97.01 E-value=0.00064 Score=61.86 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 106 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~ 106 (500)
+|||+|+|++-++++|. ++.+++..+.++. |++....+.++++++++. .++++++|..|-++++
T Consensus 2 igIDvGGT~TD~v~~d~-~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT 65 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE-DTGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTT 65 (176)
T ss_pred eeEecCCCcEEEEEEeC-CCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccH
Confidence 36999999999999998 6678888877663 455778888899998877 7777899999999998
Q ss_pred cceeEEeeCCCCCccc
Q psy9709 107 RETTVVWDLNTGEPLY 122 (500)
Q Consensus 107 ~~~~v~~d~~~g~pl~ 122 (500)
..+=.++-+ +|.++.
T Consensus 66 ~~tNAl~e~-~g~~v~ 80 (176)
T PF05378_consen 66 VATNALLER-KGARVG 80 (176)
T ss_pred HHHHHHHhc-cCCCce
Confidence 877777777 475543
No 70
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.00 E-value=0.0018 Score=63.30 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=51.4
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
+|||.|+|++|++|+|. +|+++.+..... .+....+.++..+.+.+++++++++ .+.+..+|..+.+.
T Consensus 1 lGIDgGgTkt~~vl~d~-~g~il~~~~~~~------~n~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~~~~~g 68 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE-NGNILGRGKGGG------ANYNSVGFEEAMENIKEAIEEALSQ---AGLSPDDIAAICIG 68 (271)
T ss_dssp EEEEECSSEEEEEEEET-TSEEEEEEEES-------TTHHHHHHHHHHHHHHHHHHHHHHH---HTTSTTCCCEEEEE
T ss_pred CEEeeChheeeeEEEeC-CCCEEEEEEeCC------CCCCCCCcchhhhHHHHHHHHHHHH---cCCCccccceeeee
Confidence 47999999999999998 999887665322 2223356788899999999999888 67777777666433
No 71
>PRK13321 pantothenate kinase; Reviewed
Probab=96.73 E-value=0.0052 Score=59.58 Aligned_cols=63 Identities=16% Similarity=0.284 Sum_probs=43.0
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
+++||+|.|++|+++||. + +++...+.+++ ...+++++...+.+.++ + .+.+.++|.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~~-~-~i~~~~~~~T~--------~~~~~~~~~~~l~~l~~----~---~~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG-D-RLLRSFRLPTD--------KSRTSDELGILLLSLFR----H---AGLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEEC-C-EEEEEEEEecC--------CCCCHHHHHHHHHHHHH----H---cCCChhhCCeEEEEe
Confidence 456999999999999995 4 77776665554 22345556655555443 3 344456799999997
No 72
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.71 E-value=0.0089 Score=58.36 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=45.3
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
.+++|||+|+|++|++++| + ++++.....++. .++. +...+++++++++ .+....++..+++
T Consensus 32 m~~~GIDiGStt~K~Vlld-~-~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~---~g~~~~~v~~~~~ 93 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC-D-GELYGYNSMRTG----------NNSP---DSAKNALQGIMDK---IGMKLEDINYVVG 93 (293)
T ss_pred cEEEEEEeCchhEEEEEEe-C-CEEEEEEeecCC----------CCHH---HHHHHHHHHHHHH---cCCcccceEEEEE
Confidence 4789999999999999999 4 666654433222 1222 2455666666665 3555668888888
Q ss_pred cCCCc
Q psy9709 233 TNQRE 237 (500)
Q Consensus 233 s~~~~ 237 (500)
|+.+.
T Consensus 94 TGyGr 98 (293)
T TIGR03192 94 TGYGR 98 (293)
T ss_pred ECcch
Confidence 87763
No 73
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.62 E-value=0.0085 Score=60.89 Aligned_cols=72 Identities=22% Similarity=0.336 Sum_probs=50.2
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 229 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~ 229 (500)
+.+.+++|||+|+|++|++++| + ++++.....++. ++ .+.+.+++++++++ .+++..+|..
T Consensus 141 ~~~g~~lGIDiGSTttK~Vl~d-d-~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~di~~ 201 (404)
T TIGR03286 141 RQEGLTLGIDSGSTTTKAVVME-D-NEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLEDVEA 201 (404)
T ss_pred ccCCEEEEEEcChhheeeEEEc-C-CeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccceeE
Confidence 3455899999999999999998 4 778765433221 11 23455666666654 4667788999
Q ss_pred EEEcCCCceeE
Q psy9709 230 LGITNQRETTV 240 (500)
Q Consensus 230 I~vs~~~~~~v 240 (500)
|++|+.+...+
T Consensus 202 i~~TGyGR~~i 212 (404)
T TIGR03286 202 IGTTGYGRFTI 212 (404)
T ss_pred EEeeeecHHHH
Confidence 99998875554
No 74
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.62 E-value=0.0094 Score=57.35 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=45.5
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEE-EEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi-~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
+++|||+|+|++|++++|.+ ++.+ ......++. .+ .+| .+...+++++++++ .+++..+|..|+.
T Consensus 2 ~~~GIDiGStttK~Vlid~~-~~~~~~~~~~~~~~----~~---~~~---~~~~~~~l~~~~~~---~g~~~~~i~~i~~ 67 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVD-GDKEECLAKRNDRI----RQ---RDP---FKLAEDAYDDLLEE---AGLAAADVAYCAT 67 (262)
T ss_pred eEEEEEcCcccEEEEEEecC-CCeeEEEEEEEecC----CC---CCH---HHHHHHHHHHHHHH---cCCChhheEEEEE
Confidence 57999999999999999953 4322 222222221 11 122 23355666666654 4666678999999
Q ss_pred cCCCcee
Q psy9709 233 TNQRETT 239 (500)
Q Consensus 233 s~~~~~~ 239 (500)
|+.+...
T Consensus 68 TGYGR~~ 74 (262)
T TIGR02261 68 TGEGESL 74 (262)
T ss_pred ECCchhh
Confidence 9887544
No 75
>PRK13318 pantothenate kinase; Reviewed
Probab=96.61 E-value=0.0082 Score=58.29 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=43.3
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
+++||+|.|++|.+++| +|+++.+.+.+++. ...++++. +.++++++. .+.+..++.+|++++
T Consensus 2 iL~IDIGnT~iK~al~d--~g~i~~~~~~~t~~--------~~~~~~~~----~~l~~l~~~---~~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE--GGKLVAHWRISTDS--------RRTADEYG----VWLKQLLGL---SGLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE--CCEEEEEEEEeCCC--------CCCHHHHH----HHHHHHHHH---cCCCcccCceEEEEE
Confidence 45699999999999999 38888776665541 12344444 444555554 555556799999997
No 76
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.55 E-value=0.0052 Score=63.15 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=49.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeec-CCC-----Ccccc-C-HHHHHHHHHHHHHHHHHHHH-hCCCCC
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTIS-PQE-----GWAEQ-D-PMEILQAVQTTMDRAIEKLS-AHGLSR 95 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~-~~~-----g~~e~-d-~~~~~~~~~~~i~~~~~~~~-~~~~~~ 95 (500)
|=++||+|||++.+.++|..+|++++..+...+... ..+ .++.. + .+++-+.+.+.++++++++- +.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 446799999999999999878999999988777542 221 12221 1 34555555555555554432 278888
Q ss_pred CCeeEEEEcC
Q psy9709 96 DDIVTLGITN 105 (500)
Q Consensus 96 ~~i~~Igis~ 105 (500)
++|..|.|++
T Consensus 82 ~~I~~i~i~G 91 (412)
T PF14574_consen 82 EDIYEIVIVG 91 (412)
T ss_dssp GGEEEEEEEE
T ss_pred HHeEEEEEEe
Confidence 9998888874
No 77
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=96.54 E-value=0.011 Score=58.59 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=58.1
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
++|||+|.++++++++|.+ |+++...+.+++. ..+++++.+.+.+.+++... ++.+|||+.
T Consensus 3 ~lgvdig~~~i~~~l~dl~-g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~----------~~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGED-GQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQA----------QADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCC-CcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhhh----------cCcEEEEeC
Confidence 6899999999999999985 9998766665541 12466677777766665432 356788888
Q ss_pred CCceeEEEeCCCCcccc-cce-eeccCCCHHHHH
Q psy9709 235 QRETTVVWDLNTGEPLY-NAI-VWSDTRADNIVD 266 (500)
Q Consensus 235 ~~~~~v~~d~~~G~~l~-~~i-~w~D~r~~~~~~ 266 (500)
++ ++|...+..+. +.+ -|.+..-.++++
T Consensus 64 pG----~vd~~~~~~~~~~~~~~w~~~~l~~~l~ 93 (291)
T PRK05082 64 TG----IINDGILTALNPHNLGGLLHFPLVQTLE 93 (291)
T ss_pred cc----cccCCeeEEecCCCCccccCCChHHHHH
Confidence 76 56652112122 223 487776555443
No 78
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.53 E-value=0.0076 Score=49.01 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=24.3
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeee
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD 184 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~ 184 (500)
+||||+|+|.+|++++|.+ |+++...+.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~-g~~~~~~~~~ 31 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDET-GKLADPLEVI 31 (99)
T ss_pred EEEEccCCCeEEEEEECCC-CCEecCEEEE
Confidence 6899999999999999975 9888655443
No 79
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.49 E-value=0.023 Score=60.52 Aligned_cols=148 Identities=8% Similarity=0.067 Sum_probs=83.4
Q ss_pred cEEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeec--CCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 99 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~--~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~ 99 (500)
.++++||+||.|+|..|++..+| +++...+..+..-. ...| .-+++ -.+..++++++..+.+++.+ .++|.
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~F~~~~~~~~--v~~i~ 80 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNE-AMERGWQCLRLFAERLQDIP--PSQIR 80 (496)
T ss_pred CEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHH-HHHHHHHHHHHHHHHHHhCC--CCeEE
Confidence 57889999999999999996334 33434433333211 1111 22333 44555677776655543343 46899
Q ss_pred EEEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEe
Q psy9709 100 TLGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIIS 171 (500)
Q Consensus 100 ~Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d 171 (500)
+++-++.| |+.|++-+-.-+- +.+..-.....|. . -.|. ....+. .+.+|||+.|+-.++++
T Consensus 81 ~vATsAvR------eA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~-g-v~~~-l~~~~~-~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 81 VVATATLR------LAVNADEFLAKAQEILGCPVQVISGEEEARLIYQ-G-VAHT-TGGADQ-RLVVDIGGASTELVTGT 150 (496)
T ss_pred EEEeHHHH------cCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHH-h-hhhc-cCCCCC-EEEEEecCCeeeEEEec
Confidence 99999888 5544443322221 1111000000222 1 1111 111122 57799999999999998
Q ss_pred CCCCeEEEEeeeecccc
Q psy9709 172 ALTQEEVVSHSMDISTI 188 (500)
Q Consensus 172 ~~~G~vi~~~~~~~~~~ 188 (500)
+ +++....+.+...+
T Consensus 151 -~-~~~~~~~Sl~lG~v 165 (496)
T PRK11031 151 -G-AQATSLFSLSMGCV 165 (496)
T ss_pred -C-CceeeeeEEeccch
Confidence 3 78887777777654
No 80
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.48 E-value=0.0082 Score=61.72 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=52.4
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCC------eEE-EC-hHHHHHHHHHHHHHHHHHHH-hCCCCC
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEG------WAE-QD-PMEILQAVQTTMDRAIEKLS-AHGLSR 224 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g------~~~-~d-~~~~~~~i~~~l~~~~~~~~-~~~~~~ 224 (500)
|-++||+|||++.+.++|..+|++++..+..+|+.....+ +.. .+ .+++-+.+.+.+.++++++. +.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~ 81 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP 81 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 6789999999999999999889999999998887643221 112 11 34455555566666555432 457888
Q ss_pred CCeeEEEEcCC
Q psy9709 225 DDIVTLGITNQ 235 (500)
Q Consensus 225 ~~I~~I~vs~~ 235 (500)
++|..|.|++.
T Consensus 82 ~~I~~i~i~GN 92 (412)
T PF14574_consen 82 EDIYEIVIVGN 92 (412)
T ss_dssp GGEEEEEEEE-
T ss_pred HHeEEEEEEec
Confidence 99999988764
No 81
>PRK10854 exopolyphosphatase; Provisional
Probab=96.44 E-value=0.046 Score=58.58 Aligned_cols=146 Identities=11% Similarity=0.112 Sum_probs=82.2
Q ss_pred EEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCcc---ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 99 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~---e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~ 99 (500)
.+++||+|+.++|..|++..+| +++...+..+.. ..|-. .-++ +-.+..++++++..+.+++.+ .+++.
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrL---g~g~~~~g~Ls~-e~~~r~~~~L~~F~~~~~~~~--v~~v~ 85 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHL---ADGLDSDNMLSE-EAMERGLNCLSLFAERLQGFS--PANVC 85 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEEC---CCCcCCCCCcCH-HHHHHHHHHHHHHHHHHHhCC--CCeEE
Confidence 5788999999999999996334 444444444332 22211 2233 345555677777665543344 46899
Q ss_pred EEEEcCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEe
Q psy9709 100 TLGITNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIIS 171 (500)
Q Consensus 100 ~Igis~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d 171 (500)
+++-++.+ +++|+..+-.-+- |.+..-...-.|. .. .+.. ...+ -.+.+|||+.|+-.++++
T Consensus 86 ~vATsAlR------eA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~-gv-~~~l-~~~~-~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 86 IVGTHTLR------QALNATDFLKRAEKVIPYPIEIISGNEEARLIFM-GV-EHTQ-PEKG-RKLVIDIGGGSTELVIGE 155 (513)
T ss_pred EEehHHHH------cCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHh-hh-hccc-CCCC-CeEEEEeCCCeEEEEEec
Confidence 99999888 5544444432221 1111100000222 11 1111 1112 257799999999999998
Q ss_pred CCCCeEEEEeeeecccc
Q psy9709 172 ALTQEEVVSHSMDISTI 188 (500)
Q Consensus 172 ~~~G~vi~~~~~~~~~~ 188 (500)
. +++....+.+...+
T Consensus 156 ~--~~~~~~~S~~lG~v 170 (513)
T PRK10854 156 N--FEPILVESRRMGCV 170 (513)
T ss_pred C--CCeeEeEEEeccee
Confidence 3 77666666665543
No 82
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.014 Score=56.61 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=51.6
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEECh-HHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIV 228 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~-~~~~~~i~~~l~~~~~~~~~~~~~~~~I~ 228 (500)
+++.|+||||-|+|++|+.+.|. +|+++...... +-....++ +.-+..+.+++.+++.+ ++.++++|.
T Consensus 2 ~~~~~~lGVDGGGTkt~a~l~~~-~g~vlg~g~sG-------pAN~~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~i~ 70 (301)
T COG2971 2 EPMPYFLGVDGGGTKTRAVLADE-DGNVLGRGKSG-------PANIQLVGKEEAVRNIKDAIREALDE---AGLKPDEIA 70 (301)
T ss_pred CCccEEEEEccCCcceEEEEEcC-CCcEEEEeccC-------CceecccchHHHHHHHHHHHHHHHHh---cCCCHHHhC
Confidence 46779999999999999999996 49999876332 11123445 77888888888888765 466677664
Q ss_pred EE
Q psy9709 229 TL 230 (500)
Q Consensus 229 ~I 230 (500)
.+
T Consensus 71 ~~ 72 (301)
T COG2971 71 AI 72 (301)
T ss_pred ce
Confidence 43
No 83
>PRK00292 glk glucokinase; Provisional
Probab=96.25 E-value=0.012 Score=59.08 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=48.9
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
+++++||||+|++|++++|.+.++++...+.+++ +.+ .+.+.+.+++++. . ..++.+|||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~~~----~~~~~l~~~l~~~--~---~~~~~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------DYP----SLEDAIRAYLADE--H---GVQVRSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------CCC----CHHHHHHHHHHhc--c---CCCCceEEE
Confidence 3689999999999999999543555655544432 111 1344444444320 1 125788888
Q ss_pred cCCCceeEEEeCCCCcccccceeecc
Q psy9709 233 TNQRETTVVWDLNTGEPLYNAIVWSD 258 (500)
Q Consensus 233 s~~~~~~v~~d~~~G~~l~~~i~w~D 258 (500)
+.++ ++|. + +...+.+.|.+
T Consensus 62 g~pG----~vd~-~-~i~~~n~~w~~ 81 (316)
T PRK00292 62 AIAG----PVDG-D-EVRMTNHHWAF 81 (316)
T ss_pred EEeC----cccC-C-EEEecCCCccc
Confidence 8877 7786 2 34444556864
No 84
>PRK12408 glucokinase; Provisional
Probab=96.15 E-value=0.0085 Score=60.58 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=46.0
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeE------EEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEE------VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD 226 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~v------i~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 226 (500)
..+|++|||+|++|.+++|.+ |++ +...+.+++ +. +.+.+.+++++++ ..+
T Consensus 16 ~~~L~~DIGGT~i~~al~d~~-g~~~~~~~~~~~~~~~t~-----------~~----~~~~~~i~~~~~~-------~~~ 72 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCAS-PDAAKPVELLDYRTYRCA-----------DY----PSLAAILADFLAE-------CAP 72 (336)
T ss_pred ccEEEEEcChhhhheeEEecc-CCccccccccceeEecCC-----------Cc----cCHHHHHHHHHhc-------CCC
Confidence 347999999999999999964 663 333222221 11 1133344444432 124
Q ss_pred eeEEEEcCCCceeEEEeCCCCcccccceeec
Q psy9709 227 IVTLGITNQRETTVVWDLNTGEPLYNAIVWS 257 (500)
Q Consensus 227 I~~I~vs~~~~~~v~~d~~~G~~l~~~i~w~ 257 (500)
+.+|+|+..+. .++ +|....+.+.|.
T Consensus 73 ~~~igIg~pG~---~~~--~g~v~~~nl~w~ 98 (336)
T PRK12408 73 VRRGVIASAGY---ALD--DGRVITANLPWT 98 (336)
T ss_pred cCEEEEEecCC---ceE--CCEEEecCCCCc
Confidence 78889988873 144 477666666784
No 85
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=96.12 E-value=0.0083 Score=59.49 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=26.0
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeee
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTI 59 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~ 59 (500)
|+|||+-|+|++++|. +|+++...+.+.|..
T Consensus 2 G~DiGGA~~K~a~~~~-~g~~~~v~~~~~plW 32 (318)
T TIGR03123 2 GIDIGGANTKAAELDE-DGRIKEVHQLYCPLW 32 (318)
T ss_pred ccccccceeeeEEecC-CCceeEEEEecCccc
Confidence 6999999999999997 898887776666644
No 86
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=96.11 E-value=0.019 Score=56.81 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=46.5
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++|||+|.|+++++++|. +|+++.+.+.+++. ..+++++.+.+.+.++++.. ++.+|||+.
T Consensus 3 ~lgvdig~~~i~~~l~dl-~g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~----------~~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE-DGQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQA----------QADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcC-CCcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhhh----------cCcEEEEeC
Confidence 466999999999999998 99999877665541 23567777777777766532 356788887
Q ss_pred Cc
Q psy9709 106 QR 107 (500)
Q Consensus 106 ~~ 107 (500)
.+
T Consensus 64 pG 65 (291)
T PRK05082 64 TG 65 (291)
T ss_pred cc
Confidence 66
No 87
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=96.05 E-value=0.0066 Score=66.89 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=44.3
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++|+|||+|++|++++|. +|+++...+.+++. ++.+.+.+++++++ .+. .++.+|||+.
T Consensus 20 ~L~iDIGGT~ir~al~~~-~g~i~~~~~~~t~~---------------~~~~~~~i~~~l~~---~~~--~~~~~igig~ 78 (638)
T PRK14101 20 RLLADVGGTNARFALETG-PGEITQIRVYPGAD---------------YPTLTDAIRKYLKD---VKI--GRVNHAAIAI 78 (638)
T ss_pred EEEEEcCchhheeeeecC-CCcccceeEEecCC---------------CCCHHHHHHHHHHh---cCC--CCcceEEEEE
Confidence 566999999999999997 89987776554421 13455666666654 332 3577777776
Q ss_pred CcceeEEeeC
Q psy9709 106 QRETTVVWDL 115 (500)
Q Consensus 106 ~~~~~v~~d~ 115 (500)
-+ ++|.
T Consensus 79 pG----pVd~ 84 (638)
T PRK14101 79 AN----PVDG 84 (638)
T ss_pred ec----CccC
Confidence 55 5565
No 88
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.01 E-value=0.17 Score=49.43 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=38.1
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHH
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 84 (500)
..++++||+||+++|+++.+. ++++++....+-... ..| .-.|.+...+.+..+++.+
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~-~~~~~~~~~~~~~~v--r~G-~i~di~~a~~~i~~~~~~a 80 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDE-DGQPVAGALEWADVV--RDG-IVVDFIGAVTIVRRLKATL 80 (267)
T ss_pred CCEEEEEEccCceEEEEEEcC-CCCEEEEEecccccc--CCC-EEeeHHHHHHHHHHHHHHH
Confidence 357888999999999999987 787766665444322 233 3556665555555554443
No 89
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=95.99 E-value=0.034 Score=51.95 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=47.3
Q ss_pred EEEEEecCCCcceEEEEeCCCCc-EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCC-CCCCeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQE-EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL-SRDDIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~-~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~Ig 102 (500)
.+++||+|+||.|++++.. .|+ .+...+..|+. |. ...+...+++++.+.+++.+.++. .+. +.++..-+|
T Consensus 64 ~~LalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~f~~~---~~~~~~~~~l~lG 136 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVEL-SGNGKVEIEQEKYKI--PE-ELMNGSGEELFDFIADCIAEFLKE---HNLESRDEKLPLG 136 (206)
T ss_dssp EEEEEEESSSSEEEEEEEE-ESSSEEEEEEEEEE----H-HHHTSBHHHHHHHHHHHHHHHHHH---TTTTSTTSEEEEE
T ss_pred eEEEEeecCcEEEEEEEEE-cCCCCceeeeccccC--Ch-HHhcCCcccHHHHHHHHHHHHHHH---hcccccccccceE
Confidence 3566999999999999997 565 34333444431 11 112344589999999999999887 433 234444555
Q ss_pred Ec
Q psy9709 103 IT 104 (500)
Q Consensus 103 is 104 (500)
++
T Consensus 137 fT 138 (206)
T PF00349_consen 137 FT 138 (206)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 90
>PRK00292 glk glucokinase; Provisional
Probab=95.95 E-value=0.015 Score=58.20 Aligned_cols=79 Identities=14% Similarity=0.026 Sum_probs=45.8
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
+++++|+|+|++|++++|...++++.+.+.+++ + ++.+.+.+.+++++. . ..++.+|||+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~----~~~~~~~l~~~l~~~--~---~~~~~gigIg 62 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------D----YPSLEDAIRAYLADE--H---GVQVRSACFA 62 (316)
T ss_pred eEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------C----CCCHHHHHHHHHHhc--c---CCCCceEEEE
Confidence 467799999999999999414555665554432 1 112444555554320 1 1257788888
Q ss_pred CCcceeEEeeCCCCCccccccccCC
Q psy9709 105 NQRETTVVWDLNTGEPLYNAIDKMP 129 (500)
Q Consensus 105 ~~~~~~v~~d~~~g~pl~p~i~w~d 129 (500)
.-+ ++|.+ +...+.+.|..
T Consensus 63 ~pG----~vd~~--~i~~~n~~w~~ 81 (316)
T PRK00292 63 IAG----PVDGD--EVRMTNHHWAF 81 (316)
T ss_pred EeC----cccCC--EEEecCCCccc
Confidence 665 55662 23233334753
No 91
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.76 E-value=0.043 Score=54.53 Aligned_cols=148 Identities=12% Similarity=0.131 Sum_probs=80.1
Q ss_pred EEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
+++||+|+.++|..+++..++ +++...+.++..-..-...-..+++ -.+.+.+++++..+.+++.+ .+++.+++-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e-~i~~~~~~l~~f~~~~~~~~--v~~i~~vaT 78 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEE-AIERALEALKRFAELLRGFP--VDEVRAVAT 78 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHH-HHHHHHHHHHHHHHHHHhCC--CCeEEEEEc
Confidence 467999999999999996223 3444444433321110000122333 44455566666655543344 468999999
Q ss_pred cCCcceeEEeeCCCCCccccccc--------cCCccccCCCCCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 104 TNQRETTVVWDLNTGEPLYNAID--------KMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 104 s~~~~~~v~~d~~~g~pl~p~i~--------w~d~~~~~~t~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
++.|. +++++-+-..+- |.+..- -+|+........... .. .+.+|+|+.|+...+++. +
T Consensus 79 sa~R~------A~N~~~~~~~i~~~tgi~i~visg~e---Ea~l~~~gv~~~~~~-~~-~~v~DiGGGSte~~~~~~--~ 145 (300)
T TIGR03706 79 AALRD------AKNGPEFLREAEAILGLPIEVISGEE---EARLIYLGVAHTLPI-AD-GLVVDIGGGSTELILGKD--F 145 (300)
T ss_pred HHHHc------CCCHHHHHHHHHHHHCCCeEEeChHH---HHHHHHHHHHhCCCC-CC-cEEEEecCCeEEEEEecC--C
Confidence 99884 324444433321 111110 012200000000011 11 377999999999999983 7
Q ss_pred eEEEEeeeeccccc
Q psy9709 176 EEVVSHSMDISTIS 189 (500)
Q Consensus 176 ~vi~~~~~~~~~~~ 189 (500)
+++...+.++..+.
T Consensus 146 ~~~~~~Sl~lG~vr 159 (300)
T TIGR03706 146 EPGEGVSLPLGCVR 159 (300)
T ss_pred CEeEEEEEccceEE
Confidence 78777777766543
No 92
>PRK13321 pantothenate kinase; Reviewed
Probab=95.72 E-value=0.028 Score=54.51 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=41.6
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
+|+||+|.|++|.++|| + ++++...+.+++. ..+++++...+...+++. +.+.++|.+|++++
T Consensus 2 iL~IDIGnT~ik~gl~~-~-~~i~~~~~~~T~~--------~~~~~~~~~~l~~l~~~~-------~~~~~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-G-DRLLRSFRLPTDK--------SRTSDELGILLLSLFRHA-------GLDPEDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEE-C-CEEEEEEEEecCC--------CCCHHHHHHHHHHHHHHc-------CCChhhCCeEEEEe
Confidence 58999999999999999 4 5777655554431 234456665555544332 33445788888875
No 93
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.68 E-value=0.019 Score=56.13 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=46.4
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
||||.|+|++|++++|.+ |+++......-. .....+.++..+.+.+++++++++. +.+..+|..+.+
T Consensus 1 lGIDgGgTkt~~vl~d~~-g~il~~~~~~~~------n~~~~~~~~~~~~i~~~i~~~~~~~---~~~~~~i~~~~~ 67 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDEN-GNILGRGKGGGA------NYNSVGFEEAMENIKEAIEEALSQA---GLSPDDIAAICI 67 (271)
T ss_dssp EEEEECSSEEEEEEEETT-SEEEEEEEES-T------THHHHHHHHHHHHHHHHHHHHHHHH---TTSTTCCCEEEE
T ss_pred CEEeeChheeeeEEEeCC-CCEEEEEEeCCC------CCCCCCcchhhhHHHHHHHHHHHHc---CCCccccceeee
Confidence 699999999999999985 998866533211 1112345677778888888888764 455566666643
No 94
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=95.61 E-value=0.079 Score=55.31 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=53.2
Q ss_pred cccCcEEEEEecCCCcceEEEEeC-CCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy9709 20 QTQVPLIGVIDEGTRTVRFAIISA-LTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 96 (500)
Q Consensus 20 ~m~~~~i~giDiGtt~~k~~v~d~-~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~ 96 (500)
||.+.+++|||+||+++|+++.+. .+| ++++....+..-. ..| .-.|.+..-+++.++++++-+. ++.+..
T Consensus 4 ~~~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~gi--~~G-~I~d~~~~~~aI~~av~~ae~~---~g~~i~ 77 (420)
T PRK09472 4 ATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGM--DKG-GVNDLESVVKCVQRAIDQAELM---ADCQIS 77 (420)
T ss_pred ccCCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCCCc--cCC-EEEcHHHHHHHHHHHHHHHHHH---hCCccc
Confidence 355578888999999999987652 144 5566655542211 123 5678898888888888887655 666555
Q ss_pred CeeEEEEcCC
Q psy9709 97 DIVTLGITNQ 106 (500)
Q Consensus 97 ~i~~Igis~~ 106 (500)
+ +.+|+++.
T Consensus 78 ~-v~v~i~g~ 86 (420)
T PRK09472 78 S-VYLALSGK 86 (420)
T ss_pred E-EEEEecCc
Confidence 4 33677764
No 95
>PRK13318 pantothenate kinase; Reviewed
Probab=95.55 E-value=0.04 Score=53.47 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=41.1
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
+|+||+|.|++|.+++| + |+++...+.+++. ...++++.+ .++++++. .+.+..++.+|++++
T Consensus 2 iL~IDIGnT~iK~al~d-~-g~i~~~~~~~t~~--------~~~~~~~~~----~l~~l~~~---~~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-G-GKLVAHWRISTDS--------RRTADEYGV----WLKQLLGL---SGLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-C-CEEEEEEEEeCCC--------CCCHHHHHH----HHHHHHHH---cCCCcccCceEEEEE
Confidence 58999999999999999 5 8888766555431 123344443 34444433 234445688889875
No 96
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=95.35 E-value=0.06 Score=54.59 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=42.3
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHH---HHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQ---TTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~---~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
|++|..|+||+|++|||. +++++.+........ . -+++.+.+.+. +.+.+.+++ .++...+|.+|+
T Consensus 2 il~in~Gsts~k~alf~~-~~~~~~~~~~~~~~~---~----~~~~~~~~q~~~r~~~i~~~l~~---~~~~~~~i~av~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFED-ERPLFEETLRHSVEE---L----GRFKNVIDQFEFRKQVILQFLEE---HGISISKLDAVV 70 (351)
T ss_pred EEEEecCchhheEEEEeC-CCceeeeeecCCHHH---h----cccccHHHHHHHHHHHHHHHHHH---cCCCcccccEEE
Confidence 577999999999999998 888776544333111 1 12333444444 444444444 777677888883
No 97
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=95.20 E-value=0.046 Score=49.71 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=52.9
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 235 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~ 235 (500)
+|||+|+|.+-++++|.+ ..++...+.++. +++....+.+++++++++ .++++++|..|.+++.
T Consensus 2 igIDvGGT~TD~v~~d~~-~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT 65 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED-TGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTT 65 (176)
T ss_pred eeEecCCCcEEEEEEeCC-CCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccH
Confidence 699999999999999975 477777766553 345566777777777764 3556778888888776
Q ss_pred CceeEEEeC
Q psy9709 236 RETTVVWDL 244 (500)
Q Consensus 236 ~~~~v~~d~ 244 (500)
..+=.++-.
T Consensus 66 ~~tNAl~e~ 74 (176)
T PF05378_consen 66 VATNALLER 74 (176)
T ss_pred HHHHHHHhc
Confidence 555445544
No 98
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.18 Score=53.19 Aligned_cols=150 Identities=12% Similarity=0.134 Sum_probs=77.3
Q ss_pred EEEEEecCCCcceEEEEeCCC-C--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALT-Q--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 101 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~-g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I 101 (500)
.+++||+||-|+|.+|++. . | +++...+.....-..-+-.-.-+++ -.+...+|++...+.+ .+...++|.+|
T Consensus 4 ~~A~IDiGSNS~rlvV~~~-~~~~~~~l~~~k~~vrLgegl~~~g~L~~e-ai~R~~~aL~~f~e~~--~~~~~~~v~~v 79 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEI-TPGSFQVLFREKRIVRLGEGLDATGNLSEE-AIERALSALKRFAELL--DGFGAEEVRVV 79 (492)
T ss_pred eEEEEEecCCeEEEEEEec-cCCccchhhhhhhheehhcCccccCCcCHH-HHHHHHHHHHHHHHHH--hhCCCCEEEEe
Confidence 5778999999999999996 3 3 4444333222211111111122333 4445566666665554 33456789999
Q ss_pred EEcCCcceeEEeeCCCCCccc----cccccCCccccCCC-CCCCCCCC-CccccccCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 102 GITNQRETTVVWDLNTGEPLY----NAIDKMPSLVYNTP-PEPSSNTN-NNSIQTQVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 102 gis~~~~~~v~~d~~~g~pl~----p~i~w~d~~~~~~t-~~~~~~~~-n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
+-++.| |+.|++-+- ..+-+.-+-.-.+. +|++-.-. |. ... ..-.+.+|||+.|+-.++.+. .
T Consensus 80 ATsA~R------~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~-~~~-~~~~lv~DIGGGStEl~~g~~--~ 149 (492)
T COG0248 80 ATSALR------DAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVAST-LPR-KGDGLVIDIGGGSTELVLGDN--F 149 (492)
T ss_pred hhHHHH------cCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhc-CCC-CCCEEEEEecCCeEEEEEecC--C
Confidence 988887 443222110 00011101100000 11100000 10 111 233678999999999999983 5
Q ss_pred eEEEEeeeecccc
Q psy9709 176 EEVVSHSMDISTI 188 (500)
Q Consensus 176 ~vi~~~~~~~~~~ 188 (500)
++....+.+...+
T Consensus 150 ~~~~~~Sl~~G~v 162 (492)
T COG0248 150 EIGLLISLPLGCV 162 (492)
T ss_pred ccceeEEeecceE
Confidence 6666666666543
No 99
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=95.02 E-value=0.029 Score=61.87 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=50.2
Q ss_pred CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
+..+||+|||+|++|++++|.+ |+++...+.+++. + +.+...+++++++. +. .++.+||
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~-g~i~~~~~~~t~~------~---------~~~~~~i~~~l~~~---~~--~~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGP-GEITQIRVYPGAD------Y---------PTLTDAIRKYLKDV---KI--GRVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecCC-CcccceeEEecCC------C---------CCHHHHHHHHHHhc---CC--CCcceEE
Confidence 3448999999999999999975 8887665554421 1 22445555555431 21 3578888
Q ss_pred EcCCCceeEEEeCCCCcccccceeec
Q psy9709 232 ITNQRETTVVWDLNTGEPLYNAIVWS 257 (500)
Q Consensus 232 vs~~~~~~v~~d~~~G~~l~~~i~w~ 257 (500)
|+.+| ++|. + ....+.+.|.
T Consensus 76 ig~pG----pVd~-~-~~~~~nl~w~ 95 (638)
T PRK14101 76 IAIAN----PVDG-D-QVRMTNHDWS 95 (638)
T ss_pred EEEec----CccC-C-eeeecCCCcE
Confidence 88777 7776 2 2333445675
No 100
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.89 E-value=0.17 Score=46.50 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=48.3
Q ss_pred EEEecCCCcceEEEEeCC-CC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 27 GVIDEGTRTVRFAIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~-~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.|||+||+++|+++.... +| ++++....+..- -..| .-.|.+..-+++.++++++-+. .+.+.++ +.+++
T Consensus 2 ~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~g--i~~G-~I~d~~~~~~~I~~ai~~ae~~---~~~~i~~-V~v~i 74 (187)
T smart00842 2 VGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSRG--IRKG-VIVDIEAAARAIREAVEEAERM---AGVKIDS-VYVGI 74 (187)
T ss_pred EEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCC--ccCc-EEECHHHHHHHHHHHHHHHHHH---hCCcccE-EEEEE
Confidence 469999999999998642 34 555555443221 1223 5668888888888888888665 5654433 45666
Q ss_pred cCCc
Q psy9709 104 TNQR 107 (500)
Q Consensus 104 s~~~ 107 (500)
++..
T Consensus 75 ~g~~ 78 (187)
T smart00842 75 SGRH 78 (187)
T ss_pred cCCc
Confidence 6654
No 101
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=94.82 E-value=0.12 Score=51.64 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=46.5
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 229 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~ 229 (500)
+...++||||.|+|++|+++++. ++++...-... ..|. |. ...+++++.+++ +.+..+|.+
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d--~~~I~~~~~~~-----t~g~----p~-----~~~~l~~~le~l---~~~~~~I~~ 192 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMED--GKEILYGFYVS-----TKGR----PI-----AEKALKEALEEL---GEKLEEILG 192 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeC--CCeEEEEEEEc-----CCCC----hh-----HHHHHHHHHHHc---ccChheeee
Confidence 44668999999999999999994 55554332221 1221 11 244555555543 445578999
Q ss_pred EEEcCCCceeE
Q psy9709 230 LGITNQRETTV 240 (500)
Q Consensus 230 I~vs~~~~~~v 240 (500)
+++++.|...+
T Consensus 193 ~~~TGYGR~~v 203 (396)
T COG1924 193 LGVTGYGRNLV 203 (396)
T ss_pred eeeecccHHHh
Confidence 99999875544
No 102
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.27 E-value=0.36 Score=44.32 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=45.5
Q ss_pred EEEEeccCCCceEEEEeCC-CC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 155 IGVIDEGTRTVRFAIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~-~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
+.||||||+++|+++.... +| ++++....+.. .-+.| ...|.+..-+++.++++++-++ .+.+.+.+ .++
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s~--gi~~G-~I~d~~~~~~~I~~ai~~ae~~---~~~~i~~V-~v~ 73 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPSR--GIRKG-VIVDIEAAARAIREAVEEAERM---AGVKIDSV-YVG 73 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCc-EEECHHHHHHHHHHHHHHHHHH---hCCcccEE-EEE
Confidence 3689999999999998643 24 55555544321 12334 4678888877777777776544 24433333 455
Q ss_pred EcCC
Q psy9709 232 ITNQ 235 (500)
Q Consensus 232 vs~~ 235 (500)
+++.
T Consensus 74 i~g~ 77 (187)
T smart00842 74 ISGR 77 (187)
T ss_pred EcCC
Confidence 5544
No 103
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=94.14 E-value=0.075 Score=53.22 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=37.3
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCC---CCeeEEEEc
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR---DDIVTLGIT 104 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~---~~i~~Igis 104 (500)
++|||+|++|++++|. +|+++.+.. +. +. .+ ++.+.+.+++++++ .+.+. -...+||+.
T Consensus 2 ~~DIGGT~i~~glvd~-~g~~l~~~~--~~---~~-----~~----~~~l~~~i~~~l~~---~~~~~~~~~~~~~Igi~ 63 (316)
T TIGR00749 2 VGDIGGTNARLALCEI-APGEISQAK--TY---SG-----LD----FPSLEAVVRVYLEE---HKVELKDPIAKGCFAIA 63 (316)
T ss_pred eEecCcceeeEEEEec-CCCceeeeE--EE---ec-----CC----CCCHHHHHHHHHHh---cccccCCCcCeEEEEEe
Confidence 5999999999999997 777665432 21 11 11 24455566665544 22111 235788888
Q ss_pred CCc
Q psy9709 105 NQR 107 (500)
Q Consensus 105 ~~~ 107 (500)
+..
T Consensus 64 Gpv 66 (316)
T TIGR00749 64 CPI 66 (316)
T ss_pred Ccc
Confidence 653
No 104
>KOG1794|consensus
Probab=93.91 E-value=0.29 Score=47.20 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=69.1
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC-eeEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IVTLG 102 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~-i~~Ig 102 (500)
.+++||+=|.|..|++++|+ +++++++......... -.+-+..-+.+.+.++++.++ ++.++.. +.++|
T Consensus 3 ~~y~GvEGgaT~s~~Vivd~-~~~~~~~a~~~~Tnh~------~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~lg 72 (336)
T KOG1794|consen 3 DFYGGVEGGATCSRLVIVDE-DGTILGRAVGGGTNHW------LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSLG 72 (336)
T ss_pred ceeEeecCCcceeEEEEECC-CCCEeeEeeccccccc------cCCchHHHHHHHHHHHHHHhh---cCCCccCccceee
Confidence 46788999999999999998 9999998875544222 234566788888888888887 8998887 77777
Q ss_pred EcCCcceeEEeeCCCCCccccccccCCccc
Q psy9709 103 ITNQRETTVVWDLNTGEPLYNAIDKMPSLV 132 (500)
Q Consensus 103 is~~~~~~v~~d~~~g~pl~p~i~w~d~~~ 132 (500)
++--+ .|. +.-.+..+.|...++
T Consensus 73 L~lSg-----~d~--e~~~~~lv~~~R~~f 95 (336)
T KOG1794|consen 73 LGLSG-----TDQ--EDKNRKLVTEFRDKF 95 (336)
T ss_pred eeccc-----CCc--hhHHHHHHHHHHHhc
Confidence 76433 233 566777788876665
No 105
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=93.86 E-value=0.13 Score=52.01 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=45.9
Q ss_pred hhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCeEEeccCCCCCCCCCCCCCcEEEE------cCCCCCCHHHHH
Q psy9709 409 GSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVIC------GMTQFTTKGHII 482 (500)
Q Consensus 409 g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~P~~~G~r~P~~~~~~~g~f~------Gl~~~~~~~~l~ 482 (500)
-|...+|..++-..+.|+. +.+++.+++.+... |. .-....++|- =+..+.+++|++
T Consensus 298 KCAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~~-------pv--------~ISS~CtVFAESEVIslla~G~~reDIa 360 (432)
T TIGR02259 298 RCAAGCGRYLGYIADEMNM--GLHELGPLAMKSSK-------PA--------RINSTCTVFAGAELRDRLALGDKREDIL 360 (432)
T ss_pred cccccchHHHHHHHHHcCC--CHHHHHHHHhcCCC-------CC--------CcCCcceEEehHHHHHHHHCCCCHHHHH
Confidence 3566778888888888865 56666666543211 10 0112233442 244567899999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9709 483 RAALEAICFQTRDILE 498 (500)
Q Consensus 483 rAv~Egia~~~~~~~~ 498 (500)
.+++.+|+-.+...+.
T Consensus 361 AGL~~SIA~Rv~s~l~ 376 (432)
T TIGR02259 361 AGLHRAIILRAISIIS 376 (432)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999887776654
No 106
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.46 E-value=0.43 Score=48.90 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=49.1
Q ss_pred EEEEecCCCcceEEEEeCC-CC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 26 IGVIDEGTRTVRFAIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~-~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
++||||||+++|+++.... ++ ++++....|.... ..| .-.|++..-+++.++++++-+. .+....+ +.++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~gi--~~G-~I~d~~~~~~~i~~al~~~e~~---~~~~i~~-v~~~ 74 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSRGI--KKG-VINDIEAAVGSIQRAIEAAELM---AGCEIRS-VIVS 74 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCCCc--cCc-EEEcHHHHHHHHHHHHHHHHHH---hCCcccE-EEEE
Confidence 5679999999999987631 34 4555555443311 223 5668888888888888887665 5655444 5577
Q ss_pred EcCCc
Q psy9709 103 ITNQR 107 (500)
Q Consensus 103 is~~~ 107 (500)
+++..
T Consensus 75 v~g~~ 79 (371)
T TIGR01174 75 ISGAH 79 (371)
T ss_pred Ecccc
Confidence 77643
No 107
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=93.38 E-value=0.094 Score=53.07 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=26.7
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeec
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDI 185 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~ 185 (500)
+|++|||+|+|++|++++|.+ ++++.....++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~-g~Il~~~i~pT 33 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDK-GEVIGRGITNS 33 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCC-CcEEEEEecCC
Confidence 589999999999999999964 67887765554
No 108
>PLN02914 hexokinase
Probab=93.27 E-value=0.41 Score=50.54 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=42.1
Q ss_pred EEEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
.+++||+|+||.|+++++. .|+ ++...+..++. | .....-..+++|+-+.+++++.++.
T Consensus 96 ~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~l~~gt~~eLFdfIA~~i~~fl~~ 157 (490)
T PLN02914 96 LFYALDLGGTNFRVLRVQL-GGKDERVIATEFEQVSI--P-QELMFGTSEELFDFIASGLANFVAK 157 (490)
T ss_pred EEEEEecCCceEEEEEEEe-cCCCCceeeeeEEEecC--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 3455999999999999997 663 44444444432 1 1223446789999999999999976
No 109
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.27 E-value=0.74 Score=48.07 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=48.2
Q ss_pred cCCEEEEEeccCCCceEEEEeC-CCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISA-LTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 227 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~-~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I 227 (500)
.++++.||||||+++|+++... .+| ++++....+.. --+.| ...|.+..-+++.++++++-+. ++.+.+.+
T Consensus 6 ~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~--gi~~G-~I~d~~~~~~aI~~av~~ae~~---~g~~i~~v 79 (420)
T PRK09472 6 DRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR--GMDKG-GVNDLESVVKCVQRAIDQAELM---ADCQISSV 79 (420)
T ss_pred CCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCC--CccCC-EEEcHHHHHHHHHHHHHHHHHH---hCCcccEE
Confidence 3468999999999999987652 234 55565555421 11233 4678888777777777766433 34444443
Q ss_pred eEEEEcCC
Q psy9709 228 VTLGITNQ 235 (500)
Q Consensus 228 ~~I~vs~~ 235 (500)
.+++++.
T Consensus 80 -~v~i~g~ 86 (420)
T PRK09472 80 -YLALSGK 86 (420)
T ss_pred -EEEecCc
Confidence 3555543
No 110
>PF13941 MutL: MutL protein
Probab=93.19 E-value=0.33 Score=50.68 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=40.9
Q ss_pred EEEEecCCCcceEEEEe--CCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIIS--ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d--~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
++.+|+|+|.+|+.+|| ..+.+++++++.++.. + +.++...+.++++++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv--------~--~~Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTV--------E--PGDVTIGLNNALEQLEEQ 55 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCc--------C--cccHHHHHHHHHHHHHHh
Confidence 34599999999999999 4478999998887762 1 245777888888888766
No 111
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=93.10 E-value=0.23 Score=46.41 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=40.0
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~ 216 (500)
.+|+||+|+|+.|++++.......+...+..++. |. .......+++++.+.+|+.+.+++
T Consensus 64 ~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~ia~~i~~f~~~ 123 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVELSGNGKVEIEQEKYKI--PE-ELMNGSGEELFDFIADCIAEFLKE 123 (206)
T ss_dssp EEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE----H-HHHTSBHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecCcEEEEEEEEEcCCCCceeeeccccC--Ch-HHhcCCcccHHHHHHHHHHHHHHH
Confidence 4799999999999999998623334333333331 10 001223488999999999999876
No 112
>PTZ00288 glucokinase 1; Provisional
Probab=92.98 E-value=0.55 Score=48.49 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=51.5
Q ss_pred cEEEEEecCCCcceEEEEeC--CCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISA--LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 101 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~--~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I 101 (500)
.|++++|||+||+|+++|+. .++..+...+..++.. ..|..+..+.+.+.++++.+.+ ..+..-.-.+|
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~i 96 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT-------KTDIRELLEFFDEVLQKLKKNL--SFIQRVAAGAI 96 (405)
T ss_pred CeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc-------cccHHHHHHHHHHHHHHHHhcC--ccccCcCeEEE
Confidence 57888999999999999985 1222333334443311 1366777878777777776541 11222334566
Q ss_pred EEcCCcceeEEeeCCCCCccccccccCC
Q psy9709 102 GITNQRETTVVWDLNTGEPLYNAIDKMP 129 (500)
Q Consensus 102 gis~~~~~~v~~d~~~g~pl~p~i~w~d 129 (500)
+|.+ |++. |+.-.|.-.|..
T Consensus 97 AvAG------PV~~--~~~~~~~~~~~~ 116 (405)
T PTZ00288 97 SVPG------PVTG--GQLAGPFNNLKG 116 (405)
T ss_pred EEeC------ceeC--CEeecccccccc
Confidence 6655 4433 444445555543
No 113
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=92.72 E-value=1.4 Score=40.38 Aligned_cols=29 Identities=17% Similarity=0.129 Sum_probs=25.6
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
++.+|+|+||.++-..++|. +|+.++-+-
T Consensus 29 k~~vGVDLGT~~iV~~vlD~-d~~Pvag~~ 57 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDR-DGQPVAGCL 57 (277)
T ss_pred ceEEEeecccceEEEEEEcC-CCCeEEEEe
Confidence 56777999999999999998 999998664
No 114
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=92.30 E-value=0.92 Score=44.22 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=36.6
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHH
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 211 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~ 211 (500)
+.+++++|||||+++|+++.+.. ++.++....+-. .-+.|. ..|.+.....+..+++
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~-~~~~~~~~~~~~--~vr~G~-i~di~~a~~~i~~~~~ 78 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDED-GQPVAGALEWAD--VVRDGI-VVDFIGAVTIVRRLKA 78 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCC-CCEEEEEecccc--ccCCCE-EeeHHHHHHHHHHHHH
Confidence 46789999999999999999864 766655544332 123444 5565554444444443
No 115
>PLN02596 hexokinase-like
Probab=92.27 E-value=0.61 Score=49.25 Aligned_cols=60 Identities=7% Similarity=-0.023 Sum_probs=41.6
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
+.| ++||+|+||.|++.++. .|+ +....+..++. | .....-..+++|+.+.+++.+.++.
T Consensus 96 G~y-LAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~I--p-~~l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 96 GLY-YGLNLRGSNFLLLRARL-GGKNEPISDLYREEISI--P-SNVLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred eEE-EEEeeCCceEEEEEEEE-cCCCCceEEEEEEEecC--C-hHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 345 56999999999999998 664 23333333321 1 1223446789999999999999876
No 116
>PLN02362 hexokinase
Probab=91.86 E-value=0.86 Score=48.43 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=39.7
Q ss_pred EEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
+++||+|+||.|+++++. .|+ ++...+..++. |.. -.....+++|+.+.+++.+.++.
T Consensus 97 fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~I--p~~-l~~~~~~eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 97 YYALDLGGTNFRVLRVQL-GGQRSSILSQDVERHPI--PQH-LMNSTSEVLFDFIASSLKQFVEK 157 (509)
T ss_pred EEEEecCCceEEEEEEEe-cCCCcceeeceeEEEec--Chh-hccCCHHHHHHHHHHHHHHHHHh
Confidence 456999999999999998 663 22222223321 111 12346789999999999999876
No 117
>PF13941 MutL: MutL protein
Probab=91.69 E-value=0.59 Score=48.82 Aligned_cols=53 Identities=11% Similarity=0.214 Sum_probs=40.8
Q ss_pred EEEEeccCCCceEEEEe--CCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHH
Q psy9709 155 IGVIDEGTRTVRFAIIS--ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d--~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~ 217 (500)
+|.+|||+|.+|+.+|| .++.++++..+.++.. + +.++...+.+|++++.++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv--------~--~~Dv~~G~~~A~~~l~~~~ 56 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTV--------E--PGDVTIGLNNALEQLEEQT 56 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCc--------C--cccHHHHHHHHHHHHHHhc
Confidence 57899999999999999 5557888888777662 1 1467777788888877653
No 118
>PLN02405 hexokinase
Probab=91.52 E-value=0.88 Score=48.19 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=42.3
Q ss_pred EEEEEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
.+++||+|+||.|++.+.. .|+ ++...+..++. | +....-..+++|+-+.+++++.+++
T Consensus 96 ~flAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~~~~gt~~~LFdfIA~~i~~fl~~ 157 (497)
T PLN02405 96 LFYALDLGGTNFRVLRVLL-GGKDGRVVKQEFEEVSI--P-PHLMTGSSDALFDFIAAALAKFVAT 157 (497)
T ss_pred eEEEEecCCceEEEEEEEE-cCCCCceeEEEEEEeec--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 3455999999999999997 663 44444444432 1 1223446789999999999999876
No 119
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=91.44 E-value=0.69 Score=46.94 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=39.5
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeec-ccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDI-STISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~-~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
+|+|..|+||+|+++|+.+ ++++....... +.. + +.+.+.+.+.-.++.+.+.+.+.++...+|.+|+
T Consensus 2 il~in~Gsts~k~alf~~~-~~~~~~~~~~~~~~~----~----~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDE-RPLFEETLRHSVEEL----G----RFKNVIDQFEFRKQVILQFLEEHGISISKLDAVV 70 (351)
T ss_pred EEEEecCchhheEEEEeCC-CceeeeeecCCHHHh----c----ccccHHHHHHHHHHHHHHHHHHcCCCcccccEEE
Confidence 6899999999999999986 87775543332 111 1 2223333343122233333333566667788884
No 120
>PRK03011 butyrate kinase; Provisional
Probab=91.17 E-value=0.36 Score=49.12 Aligned_cols=69 Identities=14% Similarity=0.286 Sum_probs=39.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 101 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I 101 (500)
.|++|.-|+||+|.++|+. .+.+......++...-.. -..+++.+.-..+.+.+.|++.++..++|.+|
T Consensus 3 ~il~inpgststk~a~~~~--~~~~~~~~~~h~~~~~~~------~~~~~~q~~~r~~~i~~~l~~~g~~~~~l~av 71 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED--EKPIFEETLRHSAEELEK------FKTIIDQYEFRKQAILDFLKEHGIDLSELDAV 71 (358)
T ss_pred EEEEEcCCCchheEEEEcC--CceeeeeccccCHHHHhc------CCCccchHHHHHHHHHHHHHHcCCChhcceEE
Confidence 4778999999999999984 566666665554221110 01122222222223333333377877888888
No 121
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=91.04 E-value=1.6 Score=45.28 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=47.0
Q ss_pred EEEEEecCCCcceEEEEeCCCC-c--EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQ-E--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 101 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g-~--~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I 101 (500)
++.++|+||++++++|=-..++ + +++..+.+..-. .. ..-.|.+..-+++.++++++-.. ++++.++ +.+
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGi--k~-G~I~di~~~~~sI~~av~~AE~m---ag~~i~~-v~v 79 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGI--KK-GVIVDLDAAAQSIKKAVEAAERM---AGCEIKS-VIV 79 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCccc--cc-ceEEcHHHHHHHHHHHHHHHHHh---cCCCcce-EEE
Confidence 7778999999999988765333 2 333323222211 12 35568898888888888888766 7765543 344
Q ss_pred EEcC
Q psy9709 102 GITN 105 (500)
Q Consensus 102 gis~ 105 (500)
++++
T Consensus 80 s~sG 83 (418)
T COG0849 80 SLSG 83 (418)
T ss_pred Eecc
Confidence 5554
No 122
>PTZ00107 hexokinase; Provisional
Probab=90.84 E-value=1.4 Score=46.37 Aligned_cols=61 Identities=11% Similarity=0.136 Sum_probs=40.0
Q ss_pred EEEEecCCCcceEEEEeCCCCc-EEEEEEeeeee--ec---CCCC-ccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQE-EVVSHSMDIST--IS---PQEG-WAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~-~l~~~~~~~~~--~~---~~~g-~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
+++||+|+||.|+++++. .|+ .....+..+.. .. +.+. -.+...+++|+.+.++|.+.+++
T Consensus 76 fLAlDlGGTN~RV~~V~L-~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~ 143 (464)
T PTZ00107 76 YYAIDFGGTNFRAVRVSL-RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE 143 (464)
T ss_pred EEEEecCCceEEEEEEEe-CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 456999999999999998 664 33333333321 10 0000 11226789999999999999976
No 123
>PRK13331 pantothenate kinase; Reviewed
Probab=90.68 E-value=0.91 Score=43.65 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=37.5
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
+++||+|-|++|.++||. .+++...+ +... ...| ++.+++. .+++.++|.++.+++
T Consensus 9 ~L~iDiGNT~~~~g~f~~--~~~~~~~r--t~~~------~t~d-----------~~~~l~~---~~~~~~~i~~~iisS 64 (251)
T PRK13331 9 WLALMIGNSRLHWGYFSG--ETLVKTWD--TPHL------DESI-----------IQLLLPG---QTLLIVAPNPLVIAS 64 (251)
T ss_pred EEEEEeCCCcEEEEEEEC--CEEEEEEE--cCCc------chHH-----------HHHHHHH---cCCCccccCEEEEEe
Confidence 566999999999999995 45554322 2100 1111 5555555 666777888888886
Q ss_pred Cc
Q psy9709 106 QR 107 (500)
Q Consensus 106 ~~ 107 (500)
--
T Consensus 65 VV 66 (251)
T PRK13331 65 VV 66 (251)
T ss_pred cC
Confidence 53
No 124
>PRK13317 pantothenate kinase; Provisional
Probab=90.60 E-value=0.66 Score=45.43 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=21.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVS 51 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~ 51 (500)
+.+|||+|+|.+|++++|. +++++.+
T Consensus 3 ~~iGIDiGstt~K~v~~~~-~~~~~~~ 28 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEE-KKQRTFK 28 (277)
T ss_pred ceEEEEeCcccEEEEEEcC-CCeEEEE
Confidence 4567999999999999997 7776644
No 125
>PRK13324 pantothenate kinase; Reviewed
Probab=90.49 E-value=1.1 Score=43.50 Aligned_cols=65 Identities=14% Similarity=0.232 Sum_probs=39.6
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
++.||+|-|++|.++||. ++++...+.++.. .....+++.. .++.+++. .+.+..+|.++.+|+
T Consensus 2 iL~iDiGNT~ik~gl~~~--~~~~~~~r~~t~~-------~~~t~de~~~----~l~~~~~~---~~~~~~~i~~viisS 65 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG--DRIVSQIRYATSS-------VDSTSDQMGV----FLRQALRE---NSVDLGKIDGCGISS 65 (258)
T ss_pred EEEEEeCCCceEEEEEEC--CEEEEEEEEecCc-------cccchHHHHH----HHHHHHHh---cCCCccCCCeEEEEe
Confidence 455999999999999995 4566554444310 1123344443 44444444 455566788888885
Q ss_pred C
Q psy9709 106 Q 106 (500)
Q Consensus 106 ~ 106 (500)
-
T Consensus 66 V 66 (258)
T PRK13324 66 V 66 (258)
T ss_pred C
Confidence 3
No 126
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=90.13 E-value=2.2 Score=43.64 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=48.5
Q ss_pred EEEEeccCCCceEEEEeCCC-C--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALT-Q--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~-G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
++||||||+++|+++..... + ++++....+.. .-..| ...|.+.+-+++.++++++-++ .+...+. ..++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~--gi~~G-~I~d~~~~~~~i~~al~~~e~~---~~~~i~~-v~~~ 74 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR--GIKKG-VINDIEAAVGSIQRAIEAAELM---AGCEIRS-VIVS 74 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCc-EEEcHHHHHHHHHHHHHHHHHH---hCCcccE-EEEE
Confidence 67999999999999876432 3 44555544432 22333 4678888777777777776543 3444333 3455
Q ss_pred EcCCCceeEEEeC
Q psy9709 232 ITNQRETTVVWDL 244 (500)
Q Consensus 232 vs~~~~~~v~~d~ 244 (500)
+++. .+...+.
T Consensus 75 v~g~--~v~~~~~ 85 (371)
T TIGR01174 75 ISGA--HIKSQNS 85 (371)
T ss_pred Eccc--ceEEEee
Confidence 5554 3444433
No 127
>KOG1794|consensus
Probab=89.63 E-value=1.9 Score=41.72 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=52.7
Q ss_pred CCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCC-eeEE
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IVTL 230 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~-I~~I 230 (500)
+.+++|++=|.|++|.+++|.. ++++.+........ | ....+..-+.+.+.++++..+ .+.+++. ++++
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~-~~~~~~a~~~~Tnh-----~-~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~l 71 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDED-GTILGRAVGGGTNH-----W-LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSL 71 (336)
T ss_pred CceeEeecCCcceeEEEEECCC-CCEeeEeecccccc-----c-cCCchHHHHHHHHHHHHHHhh---cCCCccCcccee
Confidence 5689999999999999999975 99998765543321 1 223455666777777777665 6888777 8877
Q ss_pred EEcCC
Q psy9709 231 GITNQ 235 (500)
Q Consensus 231 ~vs~~ 235 (500)
+++-.
T Consensus 72 gL~lS 76 (336)
T KOG1794|consen 72 GLGLS 76 (336)
T ss_pred eeecc
Confidence 76533
No 128
>PTZ00288 glucokinase 1; Provisional
Probab=89.17 E-value=2 Score=44.35 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=35.2
Q ss_pred CCEEEEEeccCCCceEEEEeC--CCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHH
Q psy9709 152 VPLIGVIDEGTRTVRFAIISA--LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE 215 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~--~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~ 215 (500)
-.|++++|||+|++|..+++. ..+..+.....++++ ...|..+..+.+.+.++.+.+
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~ 83 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNV-------TKTDIRELLEFFDEVLQKLKK 83 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEeccc-------ccccHHHHHHHHHHHHHHHHh
Confidence 457999999999999999985 112233333333331 124556666666666665554
No 129
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=89.00 E-value=1.2 Score=42.72 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=35.6
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHH
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~ 84 (500)
|||+||+++|+++.+. +++.++....+-... .+..-.|.+.....+....+.+
T Consensus 1 g~dig~~~ik~v~~~~-~~~~~~~~~~~~~~~---~~g~I~d~~~~~~~l~~l~~~a 53 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE-DGQPVAGVMQFADVV---RDGIVVDFLGAVEIVRRLKDTL 53 (239)
T ss_pred CCCcccceEEEEEEec-CCCEEEEEecccccc---cCCeEEEhHHHHHHHHHHHHHH
Confidence 5999999999999998 676666554443322 2235668877666666665544
No 130
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=87.88 E-value=0.7 Score=46.22 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=19.4
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEE
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVS 180 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~ 180 (500)
|.+|||+|++|++++|.+ |..+..
T Consensus 1 l~~DIGGT~i~~glvd~~-g~~l~~ 24 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIA-PGEISQ 24 (316)
T ss_pred CeEecCcceeeEEEEecC-CCceee
Confidence 469999999999999975 665543
No 131
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=87.86 E-value=4.3 Score=42.05 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=37.4
Q ss_pred EEEEEeccCCCceEEEEeCCCC---eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHH
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQ---EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE 215 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G---~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~ 215 (500)
++.++||||+.+++++--..++ ++++..+.+.. --+.| ...|.+..-++++.+++++-.
T Consensus 7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~Sr--Gik~G-~I~di~~~~~sI~~av~~AE~ 68 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSR--GIKKG-VIVDLDAAAQSIKKAVEAAER 68 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCc--ccccc-eEEcHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765544 22333222211 11233 466888777777777766644
No 132
>PRK12440 acetate kinase; Reviewed
Probab=87.81 E-value=2.3 Score=43.58 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=25.0
Q ss_pred ccCcEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 21 m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
|...+|++|..|+||+|..|||....+++.+..
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~ 33 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGL 33 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEEEEE
Confidence 445678889999999999999963445665543
No 133
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=87.37 E-value=3.6 Score=41.61 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=42.8
Q ss_pred cEEEEEecCCCcceEEEEeCCCC--cEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 101 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~I 101 (500)
..++|||+|++++|++.+....+ +++.....+.+...-..| .-.|++++ .+++++++++ .++... -+.+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g-~i~d~~~~----~~~l~~~~~~---~~~~~k-~v~~ 73 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEG-HIVEYQAV----AEALKELLSE---LGINTK-KAAT 73 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCC-CccCHHHH----HHHHHHHHHH---cCCCcc-eEEE
Confidence 35677999999999999985223 344444445542211222 23456554 4555555555 444333 3567
Q ss_pred EEcCCc
Q psy9709 102 GITNQR 107 (500)
Q Consensus 102 gis~~~ 107 (500)
++.+..
T Consensus 74 alp~~~ 79 (348)
T TIGR01175 74 AVPGSA 79 (348)
T ss_pred EecCCe
Confidence 777654
No 134
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=87.36 E-value=2.9 Score=42.19 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=54.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.++|||--+..+-++|+|. +|+++..........+.+ |-+ +.....-.+.+...+++++++ ++++.++|.+|++
T Consensus 2 ~iLgIETScd~tsvAl~~~-~~~il~~~~~sq~~~~G~-GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~did~Iav 76 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS-DGEILSNVRETYITPPGT-GFLPRETAQHHREHILSLVKEALEE---AKITPSDISLICY 76 (345)
T ss_pred eEEEEEccchhhEEEEEEC-CCcEEEEEEeeccccCCC-CcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEE
Confidence 4788999999999999997 788887654333211111 322 233455677777888888877 8999999999999
Q ss_pred cC
Q psy9709 104 TN 105 (500)
Q Consensus 104 s~ 105 (500)
|.
T Consensus 77 t~ 78 (345)
T PTZ00340 77 TK 78 (345)
T ss_pred ec
Confidence 86
No 135
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=87.12 E-value=3.2 Score=43.29 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=28.2
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeecc
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS 186 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~ 186 (500)
.++..++.||||+..+-.++|. +|+++.....+..
T Consensus 143 Eke~gVa~IDIGgGTT~iaVf~--~G~l~~T~~l~vG 177 (475)
T PRK10719 143 ERNTRVLNIDIGGGTANYALFD--AGKVIDTACLNVG 177 (475)
T ss_pred hccCceEEEEeCCCceEEEEEE--CCEEEEEEEEecc
Confidence 4556678899999999999998 3999987766654
No 136
>PRK13320 pantothenate kinase; Reviewed
Probab=86.45 E-value=2.4 Score=40.69 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=19.8
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSH 52 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~ 52 (500)
++.||+|-|++|.++|+. ++++...
T Consensus 4 ~L~iDiGNT~ik~~~~~~--~~~~~~~ 28 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG--DELLEVF 28 (244)
T ss_pred EEEEEeCCCcEEEEEEEC--CEEEEEE
Confidence 455999999999999995 5666543
No 137
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=86.25 E-value=2.2 Score=43.72 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=39.6
Q ss_pred EEEEEecCCCcceEEEEeCC-CCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 25 LIGVIDEGTRTVRFAIISAL-TQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~-~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
-+++||+|+||.|++++... +|+..-..+ ++. .|..-...+.++++|.-+++.++..+++
T Consensus 76 ~~LaiD~GGTnlRvc~V~l~g~gt~~~~~s-ks~--lp~e~~~~~~~~~l~~~iadrl~~fi~~ 136 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVVLGGDGTFDIEQS-KSF--LPVECRDSESRDELFGFIADRLAAFIKE 136 (466)
T ss_pred CEEEEecCCceEEEEEEEeCCCCCcccccC-ccc--CchhhccCCChHHHHHHHHHHHHHHHHH
Confidence 46679999999999999872 333332221 111 2222222337899999999999998765
No 138
>PRK07058 acetate kinase; Provisional
Probab=86.11 E-value=3.1 Score=42.50 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=24.5
Q ss_pred cCcEEEEEecCCCcceEEEEeCCCC--cEEEEEE
Q psy9709 22 QVPLIGVIDEGTRTVRFAIISALTQ--EEVVSHS 53 (500)
Q Consensus 22 ~~~~i~giDiGtt~~k~~v~d~~~g--~~l~~~~ 53 (500)
++++|++|..|+||+|..|||..+. +++.+..
T Consensus 2 ~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G~ 35 (396)
T PRK07058 2 SKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKGD 35 (396)
T ss_pred CCCEEEEEECChHhheeEEEecCCCCceEEEEEE
Confidence 5678899999999999999996223 4555543
No 139
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=85.75 E-value=3.2 Score=40.59 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=21.1
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEE
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSH 52 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~ 52 (500)
+|||+|+|-+|.+..|. +++++...
T Consensus 3 iGiDiGgT~~Kiv~~~~-~~~~~f~~ 27 (279)
T TIGR00555 3 IGIDIGGTLIKVVYEEP-KGRRKFKT 27 (279)
T ss_pred EEEEeCcceEEEEEEcC-CCcEEEEE
Confidence 46999999999999997 88887543
No 140
>PRK09604 UGMP family protein; Validated
Probab=85.00 E-value=4.3 Score=40.94 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=52.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeee-eecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS-TISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~-~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
.++|||--+-.+-++|+|. +++++........ ...+..|-. +.....--+.+...+++++++ .++++.+|.+|+
T Consensus 2 ~iLgIdTS~~~~sval~~~-~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~did~ia 77 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD-GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLEDIDAIA 77 (332)
T ss_pred eEEEEEccccceEEEEEEC-CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence 4788999777899999996 6688876543221 111112211 223345566777788888877 889999999999
Q ss_pred EcC
Q psy9709 103 ITN 105 (500)
Q Consensus 103 is~ 105 (500)
++.
T Consensus 78 vt~ 80 (332)
T PRK09604 78 VTA 80 (332)
T ss_pred Eec
Confidence 987
No 141
>PRK07157 acetate kinase; Provisional
Probab=84.92 E-value=2.8 Score=42.91 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=21.9
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
|++|..|+||+|..|||..+.+++.+..
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIASGL 32 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEEEEE
Confidence 7779999999999999963345665544
No 142
>PRK13326 pantothenate kinase; Reviewed
Probab=84.23 E-value=3.7 Score=39.84 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=21.9
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeee
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDI 56 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~ 56 (500)
+++||+|-|++|.++||. ++++...+.++
T Consensus 8 ~L~IDiGNT~ik~glf~~--~~l~~~~r~~t 36 (262)
T PRK13326 8 QLIIDIGNTSISFALYKD--NKMQIFCKLKT 36 (262)
T ss_pred EEEEEeCCCeEEEEEEEC--CEEEEEEEecc
Confidence 566999999999999995 56665444443
No 143
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=84.04 E-value=4.3 Score=41.00 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=46.2
Q ss_pred EEecCCCcceEEEEeCCCCc---EEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 28 VIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
|||||+.++|++-++. .++ +......++|...-.+| ...|++.+-+++.+++++. ++. .+-+.+++.
T Consensus 1 GiDiG~~siK~v~l~~-~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~L~~~~~~~-------~~~-~k~v~~aip 70 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK-KGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEALKELLKEN-------KIK-GKKVVLAIP 70 (340)
T ss_dssp EEEE-SSEEEEEEEET-TTT--EEEEEEEEE--TTSEETT-EES-HHHHHHHHHHHHHHH-------T-----EEEEEE-
T ss_pred CeecCCCeEEEEEEEE-cCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHHHHHHHHHc-------CCC-CCeEEEEeC
Confidence 6999999999999997 553 34445566652211122 3456776555555444443 332 345667777
Q ss_pred CCccee--EEeeCC-CCCccccccccCC
Q psy9709 105 NQRETT--VVWDLN-TGEPLYNAIDKMP 129 (500)
Q Consensus 105 ~~~~~~--v~~d~~-~g~pl~p~i~w~d 129 (500)
++.--+ +-+... +.+-+..+|.|.-
T Consensus 71 ~~~vi~r~i~lP~~m~~~el~~~I~~Ea 98 (340)
T PF11104_consen 71 GSSVIIRNIRLPAVMPEKELEEAIRWEA 98 (340)
T ss_dssp GGG-EEEEEEEE----HHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 654332 222221 2466777777753
No 144
>PRK13324 pantothenate kinase; Reviewed
Probab=83.75 E-value=5 Score=38.86 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=37.0
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
+|.||+|.|++|.++||. ++++...+.++.. .....+++...+...+ .. .+.+..+|..+.+++
T Consensus 2 iL~iDiGNT~ik~gl~~~--~~~~~~~r~~t~~-------~~~t~de~~~~l~~~~----~~---~~~~~~~i~~viisS 65 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG--DRIVSQIRYATSS-------VDSTSDQMGVFLRQAL----RE---NSVDLGKIDGCGISS 65 (258)
T ss_pred EEEEEeCCCceEEEEEEC--CEEEEEEEEecCc-------cccchHHHHHHHHHHH----Hh---cCCCccCCCeEEEEe
Confidence 678999999999999993 5666544333310 1223445444444333 22 234445677767663
No 145
>PLN02914 hexokinase
Probab=83.62 E-value=2.1 Score=45.29 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=42.4
Q ss_pred CEEEEEeccCCCceEEEEeCCCCe---EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~ 216 (500)
-.+++||+|+||.|+++++.. |+ ++...+..+++ | .....-..+++++.+.+|+++.+++
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~i--p-~~l~~gt~~eLFdfIA~~i~~fl~~ 157 (490)
T PLN02914 95 GLFYALDLGGTNFRVLRVQLG-GKDERVIATEFEQVSI--P-QELMFGTSEELFDFIASGLANFVAK 157 (490)
T ss_pred eEEEEEecCCceEEEEEEEec-CCCCceeeeeEEEecC--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999975 52 44443343332 1 1122345689999999999999875
No 146
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=83.32 E-value=4.4 Score=43.29 Aligned_cols=80 Identities=11% Similarity=0.173 Sum_probs=48.1
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI 227 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I 227 (500)
..++.+||+||+|+|..+++...| +++...+.....- ....| ..++ +-.+...+|+++..+.+... +..+|
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~-e~i~r~~~~L~~F~~~~~~~--~v~~i 79 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSN-EAMERGWQCLRLFAERLQDI--PPSQI 79 (496)
T ss_pred CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCH-HHHHHHHHHHHHHHHHHHhC--CCCeE
Confidence 567899999999999999996435 3333333333321 11122 2223 34445566777766655433 45678
Q ss_pred eEEEEcCCC
Q psy9709 228 VTLGITNQR 236 (500)
Q Consensus 228 ~~I~vs~~~ 236 (500)
.+++.++..
T Consensus 80 ~~vATsAvR 88 (496)
T PRK11031 80 RVVATATLR 88 (496)
T ss_pred EEEEeHHHH
Confidence 888876654
No 147
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=83.28 E-value=3.9 Score=41.35 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=31.4
Q ss_pred EEeccCCCceEEEEeCCCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHH
Q psy9709 157 VIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212 (500)
Q Consensus 157 gIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~ 212 (500)
|||||+.++|++-++...+ ++......++|.-.-.+| ...|++.+-+.+.+++++
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l~~~L~~~~~~ 57 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEAFASIPLPPGAISDG-EIVDPEALAEALKELLKE 57 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEEEEEEE--TTSEETT-EES-HHHHHHHHHHHHHH
T ss_pred CeecCCCeEEEEEEEEcCCccEEEEEEEEECCCCCccCC-CcCCHHHHHHHHHHHHHH
Confidence 8999999999999997423 445666666663222222 345666655555444443
No 148
>PRK10854 exopolyphosphatase; Provisional
Probab=83.22 E-value=4.3 Score=43.54 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=47.4
Q ss_pred CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 228 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~ 228 (500)
..+.+||+||+|+|..+++..+| +++...+.....- ....| ..++ +-.+..++|+++..+.+... ..+++.
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~-e~~~r~~~~L~~F~~~~~~~--~v~~v~ 85 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSE-EAMERGLNCLSLFAERLQGF--SPANVC 85 (513)
T ss_pred CEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCH-HHHHHHHHHHHHHHHHHHhC--CCCeEE
Confidence 45788999999999999997545 4444444443321 11122 2233 34455566777766655443 346788
Q ss_pred EEEEcCCC
Q psy9709 229 TLGITNQR 236 (500)
Q Consensus 229 ~I~vs~~~ 236 (500)
+++.++..
T Consensus 86 ~vATsAlR 93 (513)
T PRK10854 86 IVGTHTLR 93 (513)
T ss_pred EEehHHHH
Confidence 88866544
No 149
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=83.11 E-value=4.7 Score=38.59 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred EEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHH
Q psy9709 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212 (500)
Q Consensus 157 gIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~ 212 (500)
||||||+++|+++.+.. ++-++....+-. --.+| ...|.+.....+....+.
T Consensus 1 g~dig~~~ik~v~~~~~-~~~~~~~~~~~~--~~~~g-~I~d~~~~~~~l~~l~~~ 52 (239)
T TIGR02529 1 GVDLGTANIVIVVLDED-GQPVAGVMQFAD--VVRDG-IVVDFLGAVEIVRRLKDT 52 (239)
T ss_pred CCCcccceEEEEEEecC-CCEEEEEecccc--cccCC-eEEEhHHHHHHHHHHHHH
Confidence 69999999999999976 544444333222 11233 466777665555554443
No 150
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=83.03 E-value=1.7 Score=41.93 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=27.7
Q ss_pred ccCcEEEEEecCCCcceEEEEeCCCCcEEEEEEee
Q psy9709 21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMD 55 (500)
Q Consensus 21 m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~ 55 (500)
|.+.++++||=||||.|+-+++. +|+++.+.+-.
T Consensus 2 m~~~~~i~iDWGTT~~R~wL~~~-dg~~l~~r~~~ 35 (306)
T COG3734 2 MSEPAYIAIDWGTTNLRAWLVRG-DGAVLAERRSE 35 (306)
T ss_pred CCCceEEEEecCCccEEEEEEcC-Ccceeeeeccc
Confidence 34456677999999999999998 99999876543
No 151
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=82.84 E-value=4.4 Score=42.27 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=27.2
Q ss_pred cccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeee
Q psy9709 149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMD 184 (500)
Q Consensus 149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~ 184 (500)
+.....++-||||+..+..++|+. |++++..-..
T Consensus 139 ~~~~~~V~NiDIGGGTtN~avf~~--G~v~~T~cl~ 172 (473)
T PF06277_consen 139 KEHHTVVANIDIGGGTTNIAVFDN--GEVIDTACLD 172 (473)
T ss_pred hhhCCeEEEEEeCCCceeEEEEEC--CEEEEEEEEe
Confidence 345567899999999999999993 9999776444
No 152
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=82.74 E-value=1.4 Score=45.33 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=22.5
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
|++|..|+||+|++|||..+.+++.+..
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~ 29 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLASGL 29 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeeech
Confidence 5679999999999999985566776544
No 153
>PLN02362 hexokinase
Probab=82.52 E-value=2.4 Score=45.08 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=40.1
Q ss_pred CEEEEEeccCCCceEEEEeCCCCe---EEEE--eeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQE---EVVS--HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~--~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~ 216 (500)
-.+++||+|+||.|+++++.. |+ .+.. .+.+.|.. ...-..+++++.|.+|+.+.+++
T Consensus 95 G~fLAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~Ip~~-----l~~~~~~eLFd~IA~~i~~fl~~ 157 (509)
T PLN02362 95 GTYYALDLGGTNFRVLRVQLG-GQRSSILSQDVERHPIPQH-----LMNSTSEVLFDFIASSLKQFVEK 157 (509)
T ss_pred eeEEEEecCCceEEEEEEEec-CCCcceeeceeEEEecChh-----hccCCHHHHHHHHHHHHHHHHHh
Confidence 347899999999999999985 62 2211 22222211 12346789999999999999875
No 154
>PLN02666 5-oxoprolinase
Probab=82.44 E-value=2 Score=50.72 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=50.8
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHH-HHHHHHHHHHHHHHHH-H-HhCCCCCCCeeE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPM-EILQAVQTTMDRAIEK-L-SAHGLSRDDIVT 100 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~-~~~~~~~~~i~~~~~~-~-~~~~~~~~~i~~ 100 (500)
.+.++||+|+|-+-++++|. ++.-+...+.++. .| .||. .+.+.+.+++++++.. + ...++++++|..
T Consensus 9 ~~rigIDvGGTFTD~v~~~~-~~~~~~~~K~~st--tp------~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~~ 79 (1275)
T PLN02666 9 KFRFCIDRGGTFTDVYAEVP-GGSDFRVLKLLSV--DP------ANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIEW 79 (1275)
T ss_pred CEEEEEECCcCCEeEEEEec-CCCeEEEEEeCCC--CC------CChhHHHHHHHHHHHHHHhcCCcccccCCChHHccE
Confidence 36677999999999999997 6654444444431 11 2332 3455555554444210 0 013555667888
Q ss_pred EEEcCCcceeEEeeCCCCCcc
Q psy9709 101 LGITNQRETTVVWDLNTGEPL 121 (500)
Q Consensus 101 Igis~~~~~~v~~d~~~g~pl 121 (500)
|..+++..+=.++.+ .|.++
T Consensus 80 v~hGTT~atNAller-kGa~v 99 (1275)
T PLN02666 80 IRMGTTVATNALLER-KGERI 99 (1275)
T ss_pred EEEechHHHHHHHhc-cCCcE
Confidence 877777666556665 35443
No 155
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=81.94 E-value=3.8 Score=42.09 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEecCCCcceEEEEeCCC-CcEEEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALT-QEEVVSHS 53 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~-g~~l~~~~ 53 (500)
|++|..|+||+|..+||..+ .+++.+..
T Consensus 6 iLvlN~GSSSlKf~lf~~~~~~~~l~~G~ 34 (404)
T TIGR00016 6 ILVINAGSSSLKFALFDYTNGETVLLSGL 34 (404)
T ss_pred EEEEECChHhheEEEEecCCCCceEEEEE
Confidence 77799999999999999623 45655443
No 156
>PLN02405 hexokinase
Probab=81.83 E-value=2.8 Score=44.44 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=42.4
Q ss_pred CEEEEEeccCCCceEEEEeCCCCe---EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~ 216 (500)
-.+++||+|+||.|++++... |+ .+...+..+++ | +....-..+++++.+.+|+.+.+++
T Consensus 95 G~flAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~i--p-~~~~~gt~~~LFdfIA~~i~~fl~~ 157 (497)
T PLN02405 95 GLFYALDLGGTNFRVLRVLLG-GKDGRVVKQEFEEVSI--P-PHLMTGSSDALFDFIAAALAKFVAT 157 (497)
T ss_pred eeEEEEecCCceEEEEEEEEc-CCCCceeEEEEEEeec--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999985 52 34433333332 1 1122446789999999999999875
No 157
>PLN02596 hexokinase-like
Probab=81.80 E-value=2.7 Score=44.53 Aligned_cols=60 Identities=8% Similarity=-0.001 Sum_probs=41.3
Q ss_pred CEEEEEeccCCCceEEEEeCCCCe---EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~---vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~ 216 (500)
--+++||+|+||.|+++++.. |+ +....+..+++ | .....-..+++++.+.+|+.+.+++
T Consensus 96 G~yLAlDlGGTNfRV~~V~L~-g~~~~~~~~~~~~~~I--p-~~l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 96 GLYYGLNLRGSNFLLLRARLG-GKNEPISDLYREEISI--P-SNVLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred eEEEEEeeCCceEEEEEEEEc-CCCCceEEEEEEEecC--C-hHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999985 63 23333333331 1 1112335688999999999999875
No 158
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=81.77 E-value=4.7 Score=40.01 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=42.6
Q ss_pred EEEEeccCCCceEEEEeCCCC--eEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 230 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I 230 (500)
+.+||+||+++|..+++..++ +.+...+.+...- ....| ..+++ -.+.+.+++++..+.+...+ .+++.++
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e-~i~~~~~~l~~f~~~~~~~~--v~~i~~v 76 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEE-AIERALEALKRFAELLRGFP--VDEVRAV 76 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHH-HHHHHHHHHHHHHHHHHhCC--CCeEEEE
Confidence 468999999999999996434 3333333333221 11111 22333 33444566666666554333 4577777
Q ss_pred EEcCCC
Q psy9709 231 GITNQR 236 (500)
Q Consensus 231 ~vs~~~ 236 (500)
+.++..
T Consensus 77 aTsa~R 82 (300)
T TIGR03706 77 ATAALR 82 (300)
T ss_pred EcHHHH
Confidence 755443
No 159
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.63 E-value=3.4 Score=39.13 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=37.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
+| |||-|||++|++++|. ++....+--+ +| ..+.- =...++++-++ +++..++|.-|+++
T Consensus 5 fV-GiDHGTsgi~~ai~d~-e~~~~Fklgr-----------ae--~~~~~--ek~~L~~l~de---~~i~l~eidlialt 64 (332)
T COG4020 5 FV-GIDHGTSGIKFAIYDG-EKDPEFKLGR-----------AE--LRKVA--EKSLLRELEDE---ARIALEEIDLIALT 64 (332)
T ss_pred EE-eecCCCcceEEEEEcC-CCCceEEech-----------hh--hhhhh--HHHHHHHhhHh---hCCccccceEEEEe
Confidence 55 4999999999999996 6654432110 11 01110 12334444444 66777888888887
Q ss_pred CCc
Q psy9709 105 NQR 107 (500)
Q Consensus 105 ~~~ 107 (500)
--|
T Consensus 65 YsM 67 (332)
T COG4020 65 YSM 67 (332)
T ss_pred ecc
Confidence 554
No 160
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=81.26 E-value=5.2 Score=40.44 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=42.6
Q ss_pred CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL 230 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I 230 (500)
..++|||||++++|++.+....+ +++.....+.|.-.-.+|. ..|.+.+- .++++++++ .+..... ..+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~-i~d~~~~~----~~l~~~~~~---~~~~~k~-v~~ 73 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGH-IVEYQAVA----EALKELLSE---LGINTKK-AAT 73 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCC-ccCHHHHH----HHHHHHHHH---cCCCcce-EEE
Confidence 46899999999999999985423 4555555555532223332 34655544 444555544 2333333 355
Q ss_pred EEcCC
Q psy9709 231 GITNQ 235 (500)
Q Consensus 231 ~vs~~ 235 (500)
++.+.
T Consensus 74 alp~~ 78 (348)
T TIGR01175 74 AVPGS 78 (348)
T ss_pred EecCC
Confidence 55554
No 161
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=80.83 E-value=2 Score=44.58 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.7
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeeeccc
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDIST 187 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~ 187 (500)
..+.|-+++|+|||.+++.++|.++|+++.+.....++
T Consensus 161 ~~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~q 198 (614)
T COG3894 161 KNEAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQ 198 (614)
T ss_pred cceeeeeEEecccceeeeEEEeccCCcEEEeeeccCCC
Confidence 34678899999999999999999999999876554443
No 162
>PRK12397 propionate kinase; Reviewed
Probab=79.91 E-value=4.2 Score=41.77 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=23.7
Q ss_pred ccCcEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 21 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 21 m~~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
|++. |++|..|+||+|..|||..+.+++.+..
T Consensus 1 ~~~~-iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 32 (404)
T PRK12397 1 MSYK-IMAINAGSSSLKFQLLEMPQGDMLCQGL 32 (404)
T ss_pred CCCc-EEEEECChHhheEEEEECCCCceEEEEE
Confidence 3444 7779999999999999963445666554
No 163
>PTZ00107 hexokinase; Provisional
Probab=79.64 E-value=4.5 Score=42.62 Aligned_cols=62 Identities=10% Similarity=0.165 Sum_probs=40.6
Q ss_pred EEEEEeccCCCceEEEEeCCCCe-EEEEeeee--ccccc---CCCCeE-EEChHHHHHHHHHHHHHHHHH
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQE-EVVSHSMD--ISTIS---PQEGWA-EQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~-vi~~~~~~--~~~~~---~~~g~~-~~d~~~~~~~i~~~l~~~~~~ 216 (500)
-+++||+|+|+.|++++... |. .....+.. .|... +.+... ....+++++.+.+|+.+.+++
T Consensus 75 ~fLAlDlGGTN~RV~~V~L~-g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~ 143 (464)
T PTZ00107 75 VYYAIDFGGTNFRAVRVSLR-GGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE 143 (464)
T ss_pred eEEEEecCCceEEEEEEEeC-CCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999986 53 33222222 22111 111111 235789999999999999875
No 164
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=79.58 E-value=7.9 Score=38.67 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=55.2
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeee-eecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDIS-TISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~-~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
|++||--+..+-++|+|. +++++........ ...+..|-+ +.....--+.+...+++++++ .+++.++|.+|++
T Consensus 1 iLaIdTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav 76 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD-GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAE---AGLTLSDIDAIAV 76 (314)
T ss_pred CEEEECcccceEEEEEEC-CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEE
Confidence 467999999999999996 5557766544221 112222211 223455666777778888777 8889999999999
Q ss_pred cCCcceeEEe
Q psy9709 104 TNQRETTVVW 113 (500)
Q Consensus 104 s~~~~~~v~~ 113 (500)
+..-.++-.+
T Consensus 77 ~~GPGsftgl 86 (314)
T TIGR03723 77 TAGPGLIGAL 86 (314)
T ss_pred ecCCChHHhH
Confidence 8755444433
No 165
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=79.58 E-value=7.9 Score=41.78 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=54.2
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
+|+|||--+..+-++|++. +|++++...... ..+..|-+ +.....-.+.+...+++++++ ++++..+|.+|++
T Consensus 2 ~il~iets~~~~s~a~~~~-~~~~~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav 75 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS-DGDVLFNESDPY--KPPSGGIHPREAAEHHAEAIPKVIKEALEE---AGLKPEDIDLVAF 75 (535)
T ss_pred EEEEEEccccceEEEEEeC-CCcEEEEEEeec--cCCcCCCChHHHHHHHHHHHHHHHHHHHHH---cCCCHhhCCEEEE
Confidence 4788999999999999996 678887665432 22222322 222344667777888888877 8999999999999
Q ss_pred cCC
Q psy9709 104 TNQ 106 (500)
Q Consensus 104 s~~ 106 (500)
+..
T Consensus 76 ~~g 78 (535)
T PRK09605 76 SQG 78 (535)
T ss_pred CCC
Confidence 953
No 166
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=79.52 E-value=4.9 Score=38.58 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=21.8
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEEEeeee
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSHSMDIS 57 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~ 57 (500)
+.||+|-|++|+++|+. ++++...+.++.
T Consensus 2 L~iDiGNT~i~~g~~~~--~~~~~~~r~~t~ 30 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG--NKVYQFWRLATN 30 (243)
T ss_pred EEEEECCCcEEEEEEEC--CEEEEEEEecCC
Confidence 45999999999999995 566665554443
No 167
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=79.39 E-value=4 Score=34.41 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=26.5
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeE---EEChHHHHHHHHHHHHHH
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRA 213 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~---~~d~~~~~~~i~~~l~~~ 213 (500)
+++||+|++.++++++.. +........++.. .|..|.. ..|.+++-+++..+++++
T Consensus 1 i~~iDiGs~~~~~~i~~~--~~~~~~~vl~~g~-~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED--GSDGYIRVLGVGE-VPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEET--TEEEEEEEES-----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEe--CCCCcEEEEEEec-ccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 468999999999999985 5444444333331 2223322 334455555555555443
No 168
>PRK13326 pantothenate kinase; Reviewed
Probab=79.22 E-value=5.6 Score=38.63 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=20.9
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEe
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSH 181 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~ 181 (500)
..|.||+|.|++|.++||. ++++...
T Consensus 7 ~~L~IDiGNT~ik~glf~~--~~l~~~~ 32 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKD--NKMQIFC 32 (262)
T ss_pred EEEEEEeCCCeEEEEEEEC--CEEEEEE
Confidence 3688999999999999993 5666533
No 169
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=79.16 E-value=5.4 Score=36.60 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=27.0
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeee
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSM 183 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~ 183 (500)
..++.+|+|.||.++-..++|.+ |+.++....
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~d-~~Pvag~~~ 58 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDRD-GQPVAGCLD 58 (277)
T ss_pred cCceEEEeecccceEEEEEEcCC-CCeEEEEeh
Confidence 35789999999999999999975 998876543
No 170
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=79.11 E-value=2.3 Score=42.34 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=25.7
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeeccc
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDIST 187 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~ 187 (500)
+|+|||+-++|++++|.+ |++......+.|.
T Consensus 1 ~G~DiGGA~~K~a~~~~~-g~~~~v~~~~~pl 31 (318)
T TIGR03123 1 LGIDIGGANTKAAELDED-GRIKEVHQLYCPL 31 (318)
T ss_pred CccccccceeeeEEecCC-CceeEEEEecCcc
Confidence 589999999999999975 9888777666664
No 171
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=78.46 E-value=5.9 Score=41.32 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=34.2
Q ss_pred EecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHH-HHHHHHHHHHH
Q psy9709 29 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQA-VQTTMDRAIEK 87 (500)
Q Consensus 29 iDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~-~~~~i~~~~~~ 87 (500)
+|+|+|.+|+.+||.++++++...+..+++.. +++... +.++++++.++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~----------~dv~~G~~~~a~~~l~~~ 50 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES----------DHLAGGFFNKANEKLNED 50 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch----------hhhhcchHHHHHHHHHHh
Confidence 59999999999999745777777776664321 245555 66677766655
No 172
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=78.35 E-value=8.2 Score=38.40 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=52.9
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCC-CCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQ-EGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~-~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
++||-.+..+-++|+|. +++++..........+.. .|-+ +.....--+.+...+++++++ .++++++|.+|+++
T Consensus 1 LaidTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~iav~ 76 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE-EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIE---SNVDKSEIDLIAYT 76 (305)
T ss_pred CEEecCccceEEEEEEC-CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEe
Confidence 36898888899999985 588888665444322211 2211 233455666677778888777 89999999999998
Q ss_pred CCc
Q psy9709 105 NQR 107 (500)
Q Consensus 105 ~~~ 107 (500)
.--
T Consensus 77 ~GP 79 (305)
T TIGR00329 77 QGP 79 (305)
T ss_pred cCC
Confidence 733
No 173
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=78.21 E-value=5.8 Score=41.39 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=26.9
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEee
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMD 55 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~ 55 (500)
.|=+++|+|||.+++-++|..+|+++++....
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~ 195 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITS 195 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeecc
Confidence 35566999999999999998899999877533
No 174
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.20 E-value=5.9 Score=39.22 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=38.1
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEE---EeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD 97 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~---~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 97 (500)
.++|||||++++|++.... .|+-.... ..+.|...-.+| .-.|++. +.+.+++++++ .++..++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~-~g~~~kLe~y~~~~lp~~iv~dg-~ivd~~a----v~~~Lk~ala~---~gi~~k~ 77 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR-SGNRYKLEKYASEPLPENIVADG-KIVDYDA----VASALKRALAK---LGIKSKN 77 (354)
T ss_pred ceeeEeeccceEEEEEEcc-cCCceeeeeeeecccCccccccC-CcccHHH----HHHHHHHHHHh---cCcchhh
Confidence 4667999999999999996 66554433 344442222222 3456664 45556666655 5554443
No 175
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.88 E-value=6.2 Score=39.10 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=34.7
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEE---EEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi---~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~ 216 (500)
..+|||||++++|++-... +|.-. .....+.|.---.+| ...|++.+-+ .+++++++
T Consensus 11 ~~vGIdI~~~sVKvvqLs~-~g~~~kLe~y~~~~lp~~iv~dg-~ivd~~av~~----~Lk~ala~ 70 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR-SGNRYKLEKYASEPLPENIVADG-KIVDYDAVAS----ALKRALAK 70 (354)
T ss_pred ceeeEeeccceEEEEEEcc-cCCceeeeeeeecccCccccccC-CcccHHHHHH----HHHHHHHh
Confidence 6899999999999999985 36433 444445543222233 2456665544 44555543
No 176
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=77.62 E-value=7.8 Score=33.33 Aligned_cols=31 Identities=35% Similarity=0.239 Sum_probs=24.6
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCcEEEEEEee
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMD 55 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~ 55 (500)
+++|+|||=|+|. -.+++|. +|++|...+..
T Consensus 31 ~~lIVGiDPG~tt-giAildL-~G~~l~l~S~R 61 (138)
T PF04312_consen 31 RYLIVGIDPGTTT-GIAILDL-DGELLDLKSSR 61 (138)
T ss_pred CCEEEEECCCcee-EEEEEec-CCcEEEEEeec
Confidence 5789999998875 4557898 99999877653
No 177
>KOG1369|consensus
Probab=76.77 E-value=8.7 Score=40.27 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=38.3
Q ss_pred EEEEecCCCcceEEEEeCCCCcE--EEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEE--VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~--l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
++++|+|+||.|+.++-. .|.- +......|.. |.. ...-..+++|+.+..++..-+++
T Consensus 88 ~lalDLGGTn~Rv~~v~L-~g~~~~~~~~~~~~~i--p~~-~m~gt~~~Lfd~Ia~~l~~F~~~ 147 (474)
T KOG1369|consen 88 FLALDLGGTNFRVLLVKL-GGGRTSVRMYNKIYAI--PEE-IMQGTGEELFDFIARCLADFLDK 147 (474)
T ss_pred EEEEecCCCceEEEEEEe-cCCcccceeeeeeEec--CHH-HHcCchHHHHHHHHHHHHHHHHH
Confidence 455999999999999997 5652 3222222221 111 11125788999999999998876
No 178
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=76.76 E-value=10 Score=37.58 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=24.3
Q ss_pred cccCCEEEEEeccCCCceEEEEeCCCCeEEEEe
Q psy9709 149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSH 181 (500)
Q Consensus 149 ~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~ 181 (500)
..+...++-+|||+..+-..+||. |+++...
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~--Gkv~dTa 171 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDA--GKVSDTA 171 (473)
T ss_pred hhhceEEEEEeccCCccceeeecc--cccccce
Confidence 345567889999999999999994 8877543
No 179
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=76.68 E-value=3.1 Score=35.11 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=28.2
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCC---CccccCHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE---GWAEQDPMEILQAVQTTMDRA 84 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~---g~~e~d~~~~~~~~~~~i~~~ 84 (500)
|++||+|++.++++++.. +..-.....++. ..|.. +..-.|.+++-+++..+++++
T Consensus 1 i~~iDiGs~~~~~~i~~~--~~~~~~~vl~~g-~~~s~gi~~g~Itd~~~i~~~i~~a~~~A 59 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED--GSDGYIRVLGVG-EVPSKGIKGGHITDIEDISKAIKIAIEEA 59 (120)
T ss_dssp EEEEEE-SSSEEEEEEET--TEEEEEEEES-----------HHHHH--HHHHHHHT--HHHH
T ss_pred CEEEEcCCCcEEEEEEEe--CCCCcEEEEEEe-cccccccCCCEEEEHHHHHHHHHHHHHHH
Confidence 356999999999999985 444433333332 11222 223445666666666666654
No 180
>PRK13331 pantothenate kinase; Reviewed
Probab=76.58 E-value=8.3 Score=37.12 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=19.9
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
-+|.||+|.|+++.++||. .+++.
T Consensus 8 ~~L~iDiGNT~~~~g~f~~--~~~~~ 31 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG--ETLVK 31 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC--CEEEE
Confidence 3689999999999999993 46654
No 181
>PRK12379 propionate/acetate kinase; Provisional
Probab=75.77 E-value=9.7 Score=39.07 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=24.0
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
..+|++|..|+||+|..|||..+.+++.+..
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~~G~ 34 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLMSGI 34 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEEEEE
Confidence 3578899999999999999963345665544
No 182
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=75.36 E-value=7.6 Score=37.63 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=26.6
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeee
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSM 183 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~ 183 (500)
.+..++.||=|||+.|+-+++.+ |+++.+.+-
T Consensus 3 ~~~~~i~iDWGTT~~R~wL~~~d-g~~l~~r~~ 34 (306)
T COG3734 3 SEPAYIAIDWGTTNLRAWLVRGD-GAVLAERRS 34 (306)
T ss_pred CCceEEEEecCCccEEEEEEcCC-cceeeeecc
Confidence 35788999999999999999975 988875533
No 183
>PRK12440 acetate kinase; Reviewed
Probab=75.28 E-value=11 Score=38.61 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.0
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
|.++++|+|..|+||+|..+||.+..+++.
T Consensus 1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~ 30 (397)
T PRK12440 1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVL 30 (397)
T ss_pred CCCCEEEEEECChHhheEEEEecCCCceEE
Confidence 346789999999999999999975445553
No 184
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=74.77 E-value=4.9 Score=42.68 Aligned_cols=79 Identities=13% Similarity=0.216 Sum_probs=46.3
Q ss_pred CEEEEEeccCCCceEEEEeCCCC--eEEEEeeeecccc--cCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 228 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G--~vi~~~~~~~~~~--~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~ 228 (500)
..+.+||+||.|+|.++++...| +++...+.....- ....| ..+ ++-.+....|++...+.+.. ...++|.
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g--~L~-~eai~R~~~aL~~f~e~~~~--~~~~~v~ 77 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATG--NLS-EEAIERALSALKRFAELLDG--FGAEEVR 77 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccC--CcC-HHHHHHHHHHHHHHHHHHhh--CCCCEEE
Confidence 35788999999999999996423 4443333322211 11122 223 33444556677777766543 3466788
Q ss_pred EEEEcCCC
Q psy9709 229 TLGITNQR 236 (500)
Q Consensus 229 ~I~vs~~~ 236 (500)
+|+.++..
T Consensus 78 ~vATsA~R 85 (492)
T COG0248 78 VVATSALR 85 (492)
T ss_pred EehhHHHH
Confidence 88866554
No 185
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=74.65 E-value=9.9 Score=38.02 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.9
Q ss_pred EEecCCCcceEEEEeCCCCcE
Q psy9709 28 VIDEGTRTVRFAIISALTQEE 48 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~ 48 (500)
+-|||+||+|.++++. .+..
T Consensus 2 v~DIGGTn~Rlal~~~-~~~~ 21 (316)
T PF02685_consen 2 VADIGGTNTRLALAEP-DGGP 21 (316)
T ss_dssp EEEEETTEEEEEEEEC-TCGG
T ss_pred eEEeCcccEEEEEEEc-CCCC
Confidence 4799999999999998 5544
No 186
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=74.31 E-value=11 Score=37.72 Aligned_cols=73 Identities=16% Similarity=0.222 Sum_probs=50.6
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
+|||-.+..+-++|++. ++++++...... ..+..|.+ +.....--+.+...+++++++ +++++++|.+|+++.
T Consensus 1 Lgiets~~~~s~al~~~-~~~i~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~Iavt~ 74 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE-DGEILANVSDTY--VPEKGGIHPREAAEHHAEVAPKLIKEALEE---AGVSLEDIDAVAFSQ 74 (322)
T ss_pred CEEeccccceEEEEEEC-CCeEEEEEEeec--ccCcCCcChhHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 36888777888999996 677777554433 22222322 233445566677778888877 899999999999996
No 187
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=74.21 E-value=7.7 Score=40.46 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=32.9
Q ss_pred EeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHH-HHHHHHHHHHH
Q psy9709 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQA-VQTTMDRAIEK 216 (500)
Q Consensus 158 IDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~-i~~~l~~~~~~ 216 (500)
+|||+|.+|+.+||.++++++...+..+|.. . +++... +..+++++.++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt-------~---~dv~~G~~~~a~~~l~~~ 50 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIE-------S---DHLAGGFFNKANEKLNED 50 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccc-------h---hhhhcchHHHHHHHHHHh
Confidence 5999999999999987677777766655421 1 244444 55566666554
No 188
>PRK13320 pantothenate kinase; Reviewed
Probab=73.97 E-value=13 Score=35.60 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVS 180 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~ 180 (500)
+|.||+|.|++|.++|+. ++++..
T Consensus 4 ~L~iDiGNT~ik~~~~~~--~~~~~~ 27 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG--DELLEV 27 (244)
T ss_pred EEEEEeCCCcEEEEEEEC--CEEEEE
Confidence 788999999999999993 666643
No 189
>PRK03011 butyrate kinase; Provisional
Probab=73.87 E-value=5.2 Score=40.77 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=37.3
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
.+|+|.-|+||+|.++|+. .+.+......++..--..--...|..++- .+.+.+.++ +.++..+++.+|+
T Consensus 3 ~il~inpgststk~a~~~~--~~~~~~~~~~h~~~~~~~~~~~~~q~~~r---~~~i~~~l~---~~g~~~~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED--EKPIFEETLRHSAEELEKFKTIIDQYEFR---KQAILDFLK---EHGIDLSELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEcC--CceeeeeccccCHHHHhcCCCccchHHHH---HHHHHHHHH---HcCCChhcceEEE
Confidence 3789999999999999984 45554444433321100000112222221 223333333 3567777888884
No 190
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=73.75 E-value=12 Score=37.70 Aligned_cols=76 Identities=14% Similarity=0.200 Sum_probs=49.4
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCC-CeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-GWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~-g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
.+||||.-+..+-++++|.+ |+++........ .+.. |.. +.....-.+.+...+++++++ ++++.++|.+|+
T Consensus 2 ~iLgIETScd~tsvAl~~~~-~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~did~Ia 75 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSD-GEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEE---AKITPSDISLIC 75 (345)
T ss_pred eEEEEEccchhhEEEEEECC-CcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence 47999999888999999964 777765433322 1111 322 333334455566666776664 578888999999
Q ss_pred EcCC
Q psy9709 232 ITNQ 235 (500)
Q Consensus 232 vs~~ 235 (500)
++..
T Consensus 76 vt~G 79 (345)
T PTZ00340 76 YTKG 79 (345)
T ss_pred EecC
Confidence 8753
No 191
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=73.59 E-value=9.3 Score=36.65 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=21.3
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeec
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDI 185 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~ 185 (500)
|.||+|.|++|.++|+ + ++++...+.++
T Consensus 2 L~iDiGNT~i~~g~~~-~-~~~~~~~r~~t 29 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS-G-NKVYQFWRLAT 29 (243)
T ss_pred EEEEECCCcEEEEEEE-C-CEEEEEEEecC
Confidence 6799999999999999 3 66665444433
No 192
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=73.57 E-value=7.8 Score=36.56 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=52.3
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
.+++||..|..+-++|++.++++++.....+.+ ...-+.+...+++++.+ .++...++.+|.|+
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~-------------r~hse~l~~~i~~ll~~---~~~~~~dld~iav~ 65 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLK-------------RNHAERLMPMIDELLKE---AGLSLQDLDAIAVA 65 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEecc-------------ccHHHHHHHHHHHHHHH---cCCCHHHCCEEEEc
Confidence 367799999999988888656888887766554 12333456677777776 88888899999888
Q ss_pred CCcceeEEe
Q psy9709 105 NQRETTVVW 113 (500)
Q Consensus 105 ~~~~~~v~~ 113 (500)
.--.++--+
T Consensus 66 ~GPGSFTGl 74 (220)
T COG1214 66 KGPGSFTGL 74 (220)
T ss_pred cCCCcccch
Confidence 655555443
No 193
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.26 E-value=8.8 Score=42.41 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=48.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
+.+|||+|+|.+=++++|. ++.++...+..+. |+.....+.+.++.+... . ...+|..+-++
T Consensus 3 ~~iGID~GGTfTDaV~~~~-~~g~~~~~K~lTt------------P~~~~~~~~~~~~~~~~~---~--~~~~i~~v~~g 64 (674)
T COG0145 3 LRIGIDVGGTFTDAVLLDE-DGGVLATIKVLTT------------PDLPSGIVNAGIRLALEL---L--EGSEVDLVVHG 64 (674)
T ss_pred eEEEEEcCCCcEeEEEEeC-CCCEEEEEEccCC------------CCchhhHHHHHHHHHhhc---c--ccccccEEEEe
Confidence 4567999999999999998 6657776665543 333344444444444322 1 11468888888
Q ss_pred CCcceeEEeeCCCCC
Q psy9709 105 NQRETTVVWDLNTGE 119 (500)
Q Consensus 105 ~~~~~~v~~d~~~g~ 119 (500)
++-.+=.++-+ .|.
T Consensus 65 TT~aTNaller-kG~ 78 (674)
T COG0145 65 TTLATNALLER-KGL 78 (674)
T ss_pred ccHHHHHHHhc-cCc
Confidence 77766666666 365
No 194
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=73.00 E-value=8.2 Score=36.85 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=17.9
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVS 51 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~ 51 (500)
++|||||+-|+|++.- +|.....
T Consensus 5 ilGiDIGGAntk~a~~---DG~~~~~ 27 (330)
T COG1548 5 ILGIDIGGANTKIASS---DGDNYKI 27 (330)
T ss_pred EEEeeccCccchhhhc---cCCeeee
Confidence 6779999999999984 5665543
No 195
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=72.57 E-value=6.9 Score=40.23 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=39.3
Q ss_pred EEEEEeccCCCceEEEEeCC-CCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHH
Q psy9709 154 LIGVIDEGTRTVRFAIISAL-TQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~-~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~ 216 (500)
-+|+||+|+|+.|++++... +|+..-..+. +. .|..-...+.++++|.-++..++..+.+
T Consensus 76 ~~LaiD~GGTnlRvc~V~l~g~gt~~~~~sk-s~--lp~e~~~~~~~~~l~~~iadrl~~fi~~ 136 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVVLGGDGTFDIEQSK-SF--LPVECRDSESRDELFGFIADRLAAFIKE 136 (466)
T ss_pred CEEEEecCCceEEEEEEEeCCCCCcccccCc-cc--CchhhccCCChHHHHHHHHHHHHHHHHH
Confidence 47899999999999999875 3443322111 11 1111112237899999999999887764
No 196
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=70.35 E-value=12 Score=35.84 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=24.1
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEEEeeee
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSHSMDIS 57 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~ 57 (500)
+.||+|-|+++.++++ +++++...+.++.
T Consensus 3 L~iDiGNT~~~~a~~~--~~~~~~~~r~~t~ 31 (251)
T COG1521 3 LLIDIGNTRIVFALYE--GGKVVQTWRLATE 31 (251)
T ss_pred EEEEeCCCeEEEEEec--CCeEEEEEeeccc
Confidence 4499999999999998 4788877777665
No 197
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=69.93 E-value=15 Score=33.97 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=48.5
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
+++||--+..+-+++++ +++++...... .+..--+.+...+++++++ .+++.++|.+|+++.
T Consensus 1 iLaidTs~~~~sval~~--~~~~~~~~~~~-------------~~~~h~~~l~~~i~~~l~~---~~~~~~~i~~iav~~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD--DGEILAERSEE-------------AGRNHSEILLPMIEELLAE---AGLSLQDLDAIAVGV 62 (202)
T ss_pred CEEEECCCcceEEEEEE--CCEEEEEEeeh-------------hhHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 36799999999999998 46777654322 2233445566777778777 888999999998886
Q ss_pred CcceeEE
Q psy9709 106 QRETTVV 112 (500)
Q Consensus 106 ~~~~~v~ 112 (500)
--.++..
T Consensus 63 GPGSfTG 69 (202)
T TIGR03725 63 GPGSFTG 69 (202)
T ss_pred CCChHHh
Confidence 5544443
No 198
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=68.60 E-value=8.5 Score=39.65 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.1
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVS 180 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~ 180 (500)
+|+|..|+||+|..+||.++.+++..
T Consensus 2 ILVIN~GSSS~Kfalf~~~~~~~l~~ 27 (388)
T PF00871_consen 2 ILVINPGSSSTKFALFDMDSGEVLAS 27 (388)
T ss_dssp EEEEEEESSEEEEEEEETTTTEEEEE
T ss_pred EEEEcCChHhheeeeEECCCCCeeee
Confidence 68899999999999999876677653
No 199
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=67.91 E-value=8.8 Score=32.11 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=31.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 68 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 68 ~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
-++++++++..+.+.+++++ .++++++|+.|=+|.+.
T Consensus 13 n~~e~I~~at~eLl~~i~~~---N~l~~~dIvSi~FT~T~ 49 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILER---NELSPEDIVSIIFTVTP 49 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHH---TT--GGGEEEEEEEE-T
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeCC
Confidence 57899999999999999998 99999999999998765
No 200
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=67.76 E-value=20 Score=35.80 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=17.7
Q ss_pred EEEeccCCCceEEEEeCCCCe
Q psy9709 156 GVIDEGTRTVRFAIISALTQE 176 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~ 176 (500)
|+-|||+|++|.++++...+.
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~ 21 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGP 21 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG
T ss_pred CeEEeCcccEEEEEEEcCCCC
Confidence 467999999999999987444
No 201
>PRK00976 hypothetical protein; Provisional
Probab=67.25 E-value=15 Score=36.61 Aligned_cols=18 Identities=50% Similarity=0.689 Sum_probs=15.3
Q ss_pred EEEEecCCCcceEEEEeC
Q psy9709 26 IGVIDEGTRTVRFAIISA 43 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~ 43 (500)
.+|||.|||.+|+++++.
T Consensus 3 ~~g~dhgt~~~~~~~~~~ 20 (326)
T PRK00976 3 FVGIDHGTTGIRFAIIEG 20 (326)
T ss_pred EEeecCCCccEEEEEEcC
Confidence 345999999999999964
No 202
>KOG1386|consensus
Probab=66.26 E-value=20 Score=37.54 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=56.4
Q ss_pred cCCEEEEEeccCCCceEEEEe--CCCCe-EEEEeeeecccccCCCCeE--EEChHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy9709 151 QVPLIGVIDEGTRTVRFAIIS--ALTQE-EVVSHSMDISTISPQEGWA--EQDPMEILQAVQTTMDRAIEKLSAHGLSRD 225 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d--~~~G~-vi~~~~~~~~~~~~~~g~~--~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~ 225 (500)
.-+|-+.||.|++.+|.-||. .++|. ++....+.+......||.. ..+|++.-..+..|++-+.+++.+..-...
T Consensus 7 ~~kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IPk~~h~~T 86 (501)
T KOG1386|consen 7 NLKYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIPKEKHKET 86 (501)
T ss_pred cceEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCCHhhcCCC
Confidence 456889999999999999986 33466 4554444444445566654 789999888888888887776554333334
Q ss_pred CeeEEEEcCC
Q psy9709 226 DIVTLGITNQ 235 (500)
Q Consensus 226 ~I~~I~vs~~ 235 (500)
.|.-.+..|+
T Consensus 87 pl~l~ATAGM 96 (501)
T KOG1386|consen 87 PLFLGATAGM 96 (501)
T ss_pred CeEEEecccc
Confidence 4544444444
No 203
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=66.02 E-value=44 Score=29.88 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=32.8
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEE---EEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
.|+|||-|++++=.++++. +|+.+ ......++ +. .+..+=+..+.+.+.+++++
T Consensus 3 ~iLGIDPgl~~tG~avi~~-~~~~~~~~~~G~i~t~-----~~---~~~~~Rl~~I~~~l~~~i~~ 59 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEV-EGRRLSYVASGVIRTP-----SD---LDLPERLKQIYDGLSELIDE 59 (164)
T ss_pred EEEEEccccCceeEEEEEe-cCCeEEEEEeeEEECC-----CC---CCHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999997 67632 22222222 11 12222344556666777665
No 204
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=64.45 E-value=25 Score=35.23 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=53.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCC-CCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQ-EGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~-~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
+++||.----.+-++|++. ++ +++-....+-..++. .|-+ |.-...-.+.+..++++++++ ++++.++|.+|+
T Consensus 2 ~iLGIEtScDeT~vaIv~~-~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~e---A~~~~~dID~IA 76 (342)
T COG0533 2 IILGIETSCDETGVAIVDE-EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAE---AGVSLEDIDAIA 76 (342)
T ss_pred eEEEEEcccccceeEEEec-cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCcccCCEEE
Confidence 4677886666788899996 55 665433222211222 2322 444566778888888888887 999999999999
Q ss_pred EcCCcceeE
Q psy9709 103 ITNQRETTV 111 (500)
Q Consensus 103 is~~~~~~v 111 (500)
+|. +.+++
T Consensus 77 ~T~-gPGL~ 84 (342)
T COG0533 77 VTA-GPGLG 84 (342)
T ss_pred Eec-CCCch
Confidence 985 54543
No 205
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=64.27 E-value=19 Score=35.36 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=18.3
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEV 49 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l 49 (500)
+.++ =|||+||.|++++....++..
T Consensus 7 p~Lv-gDIGGTnaRfaLv~~a~~~~~ 31 (320)
T COG0837 7 PRLV-GDIGGTNARFALVEIAPAEPL 31 (320)
T ss_pred ceEE-EecCCcceEEEEeccCCCCcc
Confidence 4455 499999999999876444443
No 206
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=63.49 E-value=33 Score=30.16 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=30.8
Q ss_pred EEEEecCCCcceEEEEeCCCCcEE---EEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
|+|||-|++++-.++++. +++.+ ......++. ..+..+=+..+.+.+.+++++
T Consensus 1 ILGIDPgl~~tG~avi~~-~~~~~~~i~~G~I~t~~--------~~~~~~Rl~~I~~~l~~li~~ 56 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE-DGGKLRLIDYGTIKTSS--------KDSLPERLKEIYEELEELIEE 56 (149)
T ss_dssp EEEEE--SSEEEEEEEEE-ETTEEEEEEEEEEE-----------S--HHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEe-eCCEEEEEEeCeEECCC--------CCCHHHHHHHHHHHHHHHHHh
Confidence 578999999999999998 66443 333333321 122334445667777777766
No 207
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=63.40 E-value=7.5 Score=38.94 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=32.3
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHH
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAV 77 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~ 77 (500)
|||-||++..++.+|. +|+++...+.++.. +..+|..+.+.+
T Consensus 1 GIDpGT~s~dv~~~dd-~g~v~~~~~ipt~~-------v~~~p~~iv~~l 42 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDD-DGKVIFYFSIPTEE-------VAKNPSIIVEEL 42 (343)
T ss_pred CCCCCCCcEEEEEEcc-CCcEEEEeeccHHH-------hhhCHHHHHHHH
Confidence 5999999999999997 89999888877653 345676554443
No 208
>PLN02666 5-oxoprolinase
Probab=63.10 E-value=11 Score=44.65 Aligned_cols=33 Identities=9% Similarity=-0.106 Sum_probs=24.3
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCCeEEEEeeee
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMD 184 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~ 184 (500)
...|.+|||+|+|-+-++++|.+ +.-+...+.+
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~~-~~~~~~~K~~ 39 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVPG-GSDFRVLKLL 39 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEecC-CCeEEEEEeC
Confidence 35688999999999999999975 4433333443
No 209
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=62.25 E-value=12 Score=31.24 Aligned_cols=38 Identities=26% Similarity=0.449 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 67 EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 67 e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
+-++++++++..+.+++++++ .++++++|..|-+|.+.
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~---N~l~~edivSv~FT~T~ 49 (117)
T cd02185 12 ENTAEEILEATRELLEEIIER---NNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeCC
Confidence 346899999999999999998 99999999999999766
No 210
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.40 E-value=41 Score=32.10 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.7
Q ss_pred CEEEEEeccCCCceEEEEeCC
Q psy9709 153 PLIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~ 173 (500)
..++|||-|||.+|++++|-+
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e 23 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGE 23 (332)
T ss_pred eEEEeecCCCcceEEEEEcCC
Confidence 458999999999999999965
No 211
>PRK13317 pantothenate kinase; Provisional
Probab=61.40 E-value=52 Score=32.22 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=57.8
Q ss_pred eeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEEEc-----CCCCCC
Q psy9709 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVICG-----MTQFTT 477 (500)
Q Consensus 404 ~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f~G-----l~~~~~ 477 (500)
.+.-.+++..||..+-=+.+.+....+++++.+++.+-. ..-++ .+-.+.|...+....+.+.+.|| ++.+.+
T Consensus 116 ~~~r~~Gt~iGGgt~~gL~~lL~~~~~~~el~~la~~g~~~~~Dl-~v~dIy~~~~~~l~i~s~csvFakv~~l~~~g~~ 194 (277)
T PRK13317 116 SQRRVGGTGIGGGTIQGLSKLLTNISDYEQLIELAKHGDRNNIDL-KVGDIYKGPLPPIPGDLTASNFGKVLHHLDSEFT 194 (277)
T ss_pred ceEEEccccccHHHHHHHHHHHhCCCCHHHHHHHHhcCCCccccc-eeccccCCCCCCCCCceeEehhhhhhhhhccCCC
Confidence 344444445555555555555644468999999988643 22233 33555544333345567777666 445678
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9709 478 KGHIIRAALEAICFQTRDI 496 (500)
Q Consensus 478 ~~~l~rAv~Egia~~~~~~ 496 (500)
++|++++++..++..+..+
T Consensus 195 ~eDIaasl~~~v~~~I~~l 213 (277)
T PRK13317 195 SSDILAGVIGLVGEVITTL 213 (277)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998776554
No 212
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=61.32 E-value=13 Score=31.09 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 67 EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 67 e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
+-+.++++++..+.+.+++++ .++++++|..|-+|.+.
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~---N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMER---NELTPEDLISVIFTVTE 49 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEecC
Confidence 346899999999999999998 99999999999999766
No 213
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=61.07 E-value=25 Score=34.91 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=46.8
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccC-CCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISP-QEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 233 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~-~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs 233 (500)
|+||.-+..+-++++|.+ ++++..........+. ..|.. +.....--+.+...+++++++ .+++.++|.+|+++
T Consensus 1 LaidTs~~~~sval~~~~-~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~iav~ 76 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEE-GNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIE---SNVDKSEIDLIAYT 76 (305)
T ss_pred CEEecCccceEEEEEECC-CcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEe
Confidence 578988888889999853 7788765544332221 12221 333333444555566666654 57888899999987
Q ss_pred C
Q psy9709 234 N 234 (500)
Q Consensus 234 ~ 234 (500)
.
T Consensus 77 ~ 77 (305)
T TIGR00329 77 Q 77 (305)
T ss_pred c
Confidence 4
No 214
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=61.03 E-value=11 Score=41.25 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=19.4
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
...++.+|+|+.+.-+.++...+|
T Consensus 192 ~~~vlV~DlGGGT~DvSi~~~~~~ 215 (595)
T PRK01433 192 KGCYLVYDLGGGTFDVSILNIQEG 215 (595)
T ss_pred CCEEEEEECCCCcEEEEEEEEeCC
Confidence 346789999999999999987534
No 215
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=60.98 E-value=11 Score=38.08 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=22.0
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSH 52 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~ 52 (500)
.+++|..|+||+|..+||..+++++.+.
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~~G 29 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLASG 29 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchhhh
Confidence 3667999999999999998456666543
No 216
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=60.72 E-value=24 Score=31.06 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=19.3
Q ss_pred cEEEEEecCC----CcceEEEEeCCCCcEEEEEEe
Q psy9709 24 PLIGVIDEGT----RTVRFAIISALTQEEVVSHSM 54 (500)
Q Consensus 24 ~~i~giDiGt----t~~k~~v~d~~~g~~l~~~~~ 54 (500)
+-|+++-.|. ..+.++++|. +|+++...+.
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~-~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDE-NGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-T-TS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEECC-CCcEEEEEEE
Confidence 3466677774 4689999998 9999987766
No 217
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=60.63 E-value=8.3 Score=42.74 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=19.7
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
...++.+|+|+++.-+.++....|
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~ 216 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDG 216 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 457899999999999999887534
No 218
>PRK14878 UGMP family protein; Provisional
Probab=59.97 E-value=31 Score=34.59 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=48.3
Q ss_pred EEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccc-cCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAE-QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 105 (500)
Q Consensus 28 giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e-~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~ 105 (500)
|||--+..+-++|+|. +++++...... ..+..|.+. .-.....+.+...+++++++ +++++++|.+|+++.
T Consensus 2 ~iets~~~~s~al~~~--~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~---a~~~~~did~Iavt~ 73 (323)
T PRK14878 2 GIESTAHTLGVGIVKE--DKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLRKALEK---AGISIEDIDAVAVSQ 73 (323)
T ss_pred EEecCCcccEEEEEEC--CEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 6887777788899984 56776554433 222233332 22344556677788888877 899999999999996
No 219
>PRK09604 UGMP family protein; Validated
Probab=59.77 E-value=38 Score=34.08 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=45.7
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeec-ccccCCCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDI-STISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~-~~~~~~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
.+||||.-+-.+-++++|.+ ++++....... .......|.. +.....--+.+...+++++++ .++++.+|.+|+
T Consensus 2 ~iLgIdTS~~~~sval~~~~-~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~did~ia 77 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDG-RGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLEDIDAIA 77 (332)
T ss_pred eEEEEEccccceEEEEEECC-CcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence 47999997777889999853 57775543221 1111112211 222233344555666666654 577888999999
Q ss_pred EcC
Q psy9709 232 ITN 234 (500)
Q Consensus 232 vs~ 234 (500)
++.
T Consensus 78 vt~ 80 (332)
T PRK09604 78 VTA 80 (332)
T ss_pred Eec
Confidence 875
No 220
>PRK00976 hypothetical protein; Provisional
Probab=57.49 E-value=26 Score=35.01 Aligned_cols=19 Identities=47% Similarity=0.702 Sum_probs=16.9
Q ss_pred EEEEEeccCCCceEEEEeC
Q psy9709 154 LIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~ 172 (500)
.++|||-|||.+|.++++.
T Consensus 2 ~~~g~dhgt~~~~~~~~~~ 20 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIEG 20 (326)
T ss_pred eEEeecCCCccEEEEEEcC
Confidence 4799999999999999953
No 221
>PRK12397 propionate kinase; Reviewed
Probab=57.03 E-value=29 Score=35.78 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
+|+|..|+||+|..+||..+.+++.
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~ 29 (404)
T PRK12397 5 IMAINAGSSSLKFQLLEMPQGDMLC 29 (404)
T ss_pred EEEEECChHhheEEEEECCCCceEE
Confidence 8999999999999999975445553
No 222
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=56.90 E-value=29 Score=38.54 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=43.6
Q ss_pred EEEEEecCCCc-ceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 25 LIGVIDEGTRT-VRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 25 ~i~giDiGtt~-~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.++|+|-|.-. +|.+++|. +|+.+..... +|.+ |..-++.....++.++.. .+ -++.+||.
T Consensus 331 ~~lglDPg~rtG~k~Avvd~-tGk~l~~~~I-----yp~~------p~~~~~~~~~~l~~l~~~---~~---Ve~iaIGn 392 (780)
T COG2183 331 ATLGLDPGFRTGCKVAVVDD-TGKLLDTATI-----YPHP------PVNQSDKAEATLKDLIRK---YK---VELIAIGN 392 (780)
T ss_pred ceeecCCccccccEEEEEcC-CCceeceeEE-----EcCC------CccchHHHHHHHHHHHHH---hC---ceEEEEec
Confidence 56779999754 99999998 8999976542 2222 222355556666666655 33 36788988
Q ss_pred cCCc
Q psy9709 104 TNQR 107 (500)
Q Consensus 104 s~~~ 107 (500)
++..
T Consensus 393 gTaS 396 (780)
T COG2183 393 GTAS 396 (780)
T ss_pred CCcc
Confidence 8755
No 223
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=56.72 E-value=25 Score=33.83 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.2
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecc
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDIS 186 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~ 186 (500)
.|.||+|.|+++.++++ + +++....+..+.
T Consensus 2 ~L~iDiGNT~~~~a~~~-~-~~~~~~~r~~t~ 31 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-G-GKVVQTWRLATE 31 (251)
T ss_pred eEEEEeCCCeEEEEEec-C-CeEEEEEeeccc
Confidence 47899999999999998 3 888776665554
No 224
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=56.60 E-value=32 Score=37.09 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=48.2
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
++||||.-+..+-+++++.+ |+++......+. .+..|.. +.....-.+.+...+++++++ ++++.++|.+|++
T Consensus 2 ~il~iets~~~~s~a~~~~~-~~~~~~~~~~~~--~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav 75 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSD-GDVLFNESDPYK--PPSGGIHPREAAEHHAEAIPKVIKEALEE---AGLKPEDIDLVAF 75 (535)
T ss_pred EEEEEEccccceEEEEEeCC-CcEEEEEEeecc--CCcCCCChHHHHHHHHHHHHHHHHHHHHH---cCCCHhhCCEEEE
Confidence 58999998888899999953 778765543321 1122321 222223444555666666654 5788889999999
Q ss_pred cCC
Q psy9709 233 TNQ 235 (500)
Q Consensus 233 s~~ 235 (500)
+..
T Consensus 76 ~~g 78 (535)
T PRK09605 76 SQG 78 (535)
T ss_pred CCC
Confidence 843
No 225
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=56.39 E-value=11 Score=37.80 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=31.4
Q ss_pred EEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHH
Q psy9709 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAV 206 (500)
Q Consensus 157 gIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i 206 (500)
|||-||+|...+.+|. +|+++...+.+...+ ..+|..+.+.+
T Consensus 1 GIDpGT~s~dv~~~dd-~g~v~~~~~ipt~~v-------~~~p~~iv~~l 42 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDD-DGKVIFYFSIPTEEV-------AKNPSIIVEEL 42 (343)
T ss_pred CCCCCCCcEEEEEEcc-CCcEEEEeeccHHHh-------hhCHHHHHHHH
Confidence 6999999999999996 499998877776643 35566544433
No 226
>PRK07058 acetate kinase; Provisional
Probab=56.00 E-value=17 Score=37.23 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.7
Q ss_pred ccCCEEEEEeccCCCceEEEEeCC
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~ 173 (500)
|+++++|+|..|+||+|..+||..
T Consensus 1 ~~~~~iLviNaGSSSlKf~l~~~~ 24 (396)
T PRK07058 1 MSKPLLLTFNAGSSTVKIGLFEVD 24 (396)
T ss_pred CCCCEEEEEECChHhheeEEEecC
Confidence 367899999999999999999975
No 227
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=53.11 E-value=16 Score=40.14 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=19.8
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
...++.+|+|+.+.-+.++....|
T Consensus 200 ~~~vlV~DlGGGT~DvSv~~~~~~ 223 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISILRLSKG 223 (616)
T ss_pred CCEEEEEECCCCeEEEEEEEeeCC
Confidence 557889999999999999987533
No 228
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=53.07 E-value=1.1e+02 Score=30.07 Aligned_cols=92 Identities=18% Similarity=0.096 Sum_probs=58.1
Q ss_pred eeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCC--CCCCCCCCcEEEEc-C-----CC
Q psy9709 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLY--APYWRKDARGVICG-M-----TQ 474 (500)
Q Consensus 404 ~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r--~P~~~~~~~g~f~G-l-----~~ 474 (500)
.+.-.+++..||.++-=+...+....+++++.++|++-. ..-+++ +..+.|.. .+-.+.+.-++-+| + +.
T Consensus 121 ~~~Rv~Gt~iGGGTf~GL~~LL~~~~~~~el~~lA~~G~~~~vDl~-V~dIYg~~y~~~~L~~d~iASsfGkv~~~~~~~ 199 (279)
T TIGR00555 121 NYERVGGTSLGGGTFLGLGKLLTGIQTFDELLEMAQHGDRTNVDLL-VGDIYGGDYSESGLDGSLTASSFGKVLSKHLDQ 199 (279)
T ss_pred cEEEEcCccccHHHHHHHHHHHcCCCCHHHHHHHHHcCCCcccccc-cccccCCCCCCCCCCcceeeeccchhhcccccc
Confidence 455445555555555455566665678999999988643 222333 45565521 12234566777777 3 34
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q psy9709 475 FTTKGHIIRAALEAICFQTRDI 496 (500)
Q Consensus 475 ~~~~~~l~rAv~Egia~~~~~~ 496 (500)
+.+++|++++++..|+..+-++
T Consensus 200 ~~~~eDiAaSLl~mV~~nIg~l 221 (279)
T TIGR00555 200 SFSPEDIAASLLGLIGNNIGQI 221 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999998876543
No 229
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=53.02 E-value=51 Score=30.57 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=16.8
Q ss_pred EEEecCCCcceEEEEeCCCCcEEE
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVV 50 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~ 50 (500)
+.||+|-|++|.+++|. + +++.
T Consensus 2 L~iDiGNT~ik~~~~~~-~-~~~~ 23 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDG-D-KLID 23 (206)
T ss_dssp EEEEE-SSEEEEEEEET-T-EEEE
T ss_pred EEEEECCCeEEEEEEEC-C-EEEe
Confidence 45999999999999996 3 4444
No 230
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=52.52 E-value=38 Score=33.88 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=44.1
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
||||..+..+-+++++.+ ++++...+.... ....|.. +.....-.+.+...+++++++ .+++..+|.+|+++.
T Consensus 1 Lgiets~~~~s~al~~~~-~~i~~~~~~~~~--~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~Iavt~ 74 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDED-GEILANVSDTYV--PEKGGIHPREAAEHHAEVAPKLIKEALEE---AGVSLEDIDAVAFSQ 74 (322)
T ss_pred CEEeccccceEEEEEECC-CeEEEEEEeecc--cCcCCcChhHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 578887777888899853 777764443321 1222322 222333344455556666654 578888999999875
No 231
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=51.80 E-value=57 Score=32.56 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=45.8
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeeccc-ccCCCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDIST-ISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~-~~~~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
+|+||.-+..+-++++|.+ ++++......... ..+..|.. +.....--+.+...+++++++ .+++.++|.+|++
T Consensus 1 iLaIdTs~~~~sval~~~~-~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav 76 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDDG-KGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAE---AGLTLSDIDAIAV 76 (314)
T ss_pred CEEEECcccceEEEEEECC-ceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEE
Confidence 4799999999999999842 3476554432211 11122221 222333444555666666654 5777889999998
Q ss_pred cCC
Q psy9709 233 TNQ 235 (500)
Q Consensus 233 s~~ 235 (500)
+..
T Consensus 77 ~~G 79 (314)
T TIGR03723 77 TAG 79 (314)
T ss_pred ecC
Confidence 754
No 232
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=51.71 E-value=14 Score=36.27 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.7
Q ss_pred ecCCCcceEEEEeCCCCcEEEEEEeeee
Q psy9709 30 DEGTRTVRFAIISALTQEEVVSHSMDIS 57 (500)
Q Consensus 30 DiGtt~~k~~v~d~~~g~~l~~~~~~~~ 57 (500)
|-||||.|+-++|. +|+++.+.+.+..
T Consensus 1 DWGTSnlR~~l~~~-~g~vl~~~~~~~G 27 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE-DGQVLAERSSPVG 27 (287)
T ss_dssp EE-SS-EEEEEE-C-TTEEEEEEEES--
T ss_pred CCchhhhhhheecC-CCcEEeeecCCcC
Confidence 78999999999997 8999998876554
No 233
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=51.55 E-value=96 Score=27.27 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=32.5
Q ss_pred EEEEecCCCcceEEEEeCCCCcEE---EEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l---~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
|+|||-|++++=.++++. +++.+ ......++ . ..+..+=+..+.+.+.++++.
T Consensus 2 ILGIDPGl~~~G~av~~~-~~~~~~~~~~g~i~t~-----~---~~~~~~rl~~I~~~l~~~i~~ 57 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQ-EGRKLIYLASGVIRTS-----S---DAPLPSRLKTIYDGLNEVIDQ 57 (154)
T ss_pred EEEEccCcCceEEEEEEe-eCCeEEEEEeeEEECC-----C---CCCHHHHHHHHHHHHHHHHHH
Confidence 678999999999999997 44332 22233332 1 112333355567777777765
No 234
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=50.55 E-value=26 Score=33.64 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=21.7
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecc
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDIS 186 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~ 186 (500)
-++|||||+-++|++.-| |........-+|
T Consensus 4 kilGiDIGGAntk~a~~D---G~~~~~d~~YlP 33 (330)
T COG1548 4 KILGIDIGGANTKIASSD---GDNYKIDHIYLP 33 (330)
T ss_pred eEEEeeccCccchhhhcc---CCeeeeeEEEec
Confidence 379999999999999844 766554444344
No 235
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=49.03 E-value=14 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=20.2
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
....++.+|+|+++..+.++....|
T Consensus 181 ~~~~vlV~D~Gggt~dvsv~~~~~~ 205 (595)
T TIGR02350 181 KDEKILVFDLGGGTFDVSILEIGDG 205 (595)
T ss_pred CCcEEEEEECCCCeEEEEEEEecCC
Confidence 3567899999999999999887533
No 236
>KOG1369|consensus
Probab=48.82 E-value=53 Score=34.61 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=39.2
Q ss_pred EEEEEeccCCCceEEEEeCCCCe-EEEEe--eeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHH
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQE-EVVSH--SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~-vi~~~--~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~ 217 (500)
-+++||.|+|+.|++++-...++ .+... ....|... ..-..+++|+-|..|+...+++.
T Consensus 87 ~~lalDLGGTn~Rv~~v~L~g~~~~~~~~~~~~~ip~~~-----m~gt~~~Lfd~Ia~~l~~F~~~~ 148 (474)
T KOG1369|consen 87 KFLALDLGGTNFRVLLVKLGGGRTSVRMYNKIYAIPEEI-----MQGTGEELFDFIARCLADFLDKM 148 (474)
T ss_pred CEEEEecCCCceEEEEEEecCCcccceeeeeeEecCHHH-----HcCchHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999986332 22222 12222111 11156789999999999998864
No 237
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=47.82 E-value=19 Score=39.93 Aligned_cols=21 Identities=19% Similarity=-0.042 Sum_probs=18.0
Q ss_pred CCEEEEEeccCCCceEEEEeC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~ 172 (500)
+..++|||+|||++++++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~ 23 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKN 23 (653)
T ss_pred cccEEEEEeCcccEEEEEEeC
Confidence 445799999999999999874
No 238
>CHL00094 dnaK heat shock protein 70
Probab=47.19 E-value=15 Score=40.38 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=18.9
Q ss_pred CCEEEEEeccCCCceEEEEeCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~ 173 (500)
...++.+|+|+.+.-+.++...
T Consensus 186 ~~~vlV~DlGgGT~DvSv~~~~ 207 (621)
T CHL00094 186 NETILVFDLGGGTFDVSILEVG 207 (621)
T ss_pred CCEEEEEEcCCCeEEEEEEEEc
Confidence 4568889999999999999865
No 239
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=47.14 E-value=66 Score=27.76 Aligned_cols=33 Identities=33% Similarity=0.192 Sum_probs=25.0
Q ss_pred ccCCEEEEEeccCCCceEEEEeCCCCeEEEEeeee
Q psy9709 150 TQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMD 184 (500)
Q Consensus 150 ~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~ 184 (500)
..+.+++|||=|||.- .+++|.+ |+++...+..
T Consensus 29 ~~~~lIVGiDPG~ttg-iAildL~-G~~l~l~S~R 61 (138)
T PF04312_consen 29 SRRYLIVGIDPGTTTG-IAILDLD-GELLDLKSSR 61 (138)
T ss_pred CCCCEEEEECCCceeE-EEEEecC-CcEEEEEeec
Confidence 3577899999998854 5557986 9999766543
No 240
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=46.95 E-value=15 Score=40.47 Aligned_cols=22 Identities=27% Similarity=0.131 Sum_probs=19.0
Q ss_pred CCEEEEEeccCCCceEEEEeCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~ 173 (500)
...++.+|+|++++-+.++...
T Consensus 184 ~~~vlV~D~GggT~dvsv~~~~ 205 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSILEIG 205 (627)
T ss_pred CCEEEEEECCCCeEEEEEEEEe
Confidence 4678999999999999998875
No 241
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=46.71 E-value=18 Score=39.98 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=17.3
Q ss_pred EEEEEeccCCCceEEEEeC
Q psy9709 154 LIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~ 172 (500)
.++|||+|||++++++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred cEEEEEeCcccEEEEEEEC
Confidence 4799999999999999984
No 242
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=46.64 E-value=16 Score=40.55 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.2
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
....++.+|+|+.+.-+.++....|
T Consensus 224 ~~~~vlV~DlGgGT~DvSv~~~~~g 248 (663)
T PTZ00400 224 DGKTIAVYDLGGGTFDISILEILGG 248 (663)
T ss_pred CCcEEEEEeCCCCeEEEEEEEecCC
Confidence 3557899999999999999886534
No 243
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=46.31 E-value=13 Score=36.44 Aligned_cols=22 Identities=50% Similarity=0.673 Sum_probs=18.3
Q ss_pred EEEecCCCcceEEEEeCCCCcEE
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEV 49 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l 49 (500)
+|||.|||++|+++++. +++..
T Consensus 2 vGiDHGTtgi~f~~~~~-~~~~~ 23 (326)
T TIGR03281 2 VGIDHGTTGIRFAIIDG-EKEPV 23 (326)
T ss_pred ccccCCCccEEEEEecC-CcceE
Confidence 35999999999999997 67543
No 244
>PF14239 RRXRR: RRXRR protein
Probab=46.26 E-value=40 Score=30.47 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=42.6
Q ss_pred EEeeCCCCCccccccc-----cC---CccccCCCCCCCCCCCCc-cccccCCEEEEEeccCCCceEEEEeCCCCeEEEEe
Q psy9709 111 VVWDLNTGEPLYNAID-----KM---PSLVYNTPPEPSSNTNNN-SIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSH 181 (500)
Q Consensus 111 v~~d~~~g~pl~p~i~-----w~---d~~~~~~t~~~~~~~~n~-~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~ 181 (500)
.++|+ +|+||.|.-. |+ ...++...||. -..+.. +.....++.++||-|+..+=.++.+. .+++...
T Consensus 2 fVld~-~gkPLmP~~p~rAR~LLk~GkA~V~r~~PFt-I~L~~~~~~~~~qpi~lgiDpGsk~tGiav~~~--~~vl~~~ 77 (176)
T PF14239_consen 2 FVLDK-NGKPLMPCHPARARKLLKQGKAKVVRRYPFT-IQLKYEPSGSYTQPIRLGIDPGSKTTGIAVVSE--KKVLWAA 77 (176)
T ss_pred eEECC-CCCcCCCCCHHHHHHHHHCCCEEEEecCCeE-EEEEeccCCCcccCEEEEECCCCCeEEEEEEeC--CEEEEEe
Confidence 46899 6999999875 43 22233333444 333332 33345778999999998888888874 4555433
No 245
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=46.24 E-value=78 Score=29.22 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=40.1
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
+|+||.-|..+-+++++ + ++++....... ...--+.+...+++++++ .+++.++|.+|+++.
T Consensus 1 iLaidTs~~~~sval~~-~-~~~~~~~~~~~-------------~~~h~~~l~~~i~~~l~~---~~~~~~~i~~iav~~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD-D-GEILAERSEEA-------------GRNHSEILLPMIEELLAE---AGLSLQDLDAIAVGV 62 (202)
T ss_pred CEEEECCCcceEEEEEE-C-CEEEEEEeehh-------------hHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 47899999999999998 3 77776443211 112223344455555554 577788898888764
Q ss_pred C
Q psy9709 235 Q 235 (500)
Q Consensus 235 ~ 235 (500)
.
T Consensus 63 G 63 (202)
T TIGR03725 63 G 63 (202)
T ss_pred C
Confidence 3
No 246
>PRK13411 molecular chaperone DnaK; Provisional
Probab=46.13 E-value=18 Score=40.10 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=19.6
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
...++.+|+|+.+.-+.++....|
T Consensus 185 ~~~vlV~DlGgGT~dvsi~~~~~~ 208 (653)
T PRK13411 185 EQLILVFDLGGGTFDVSILQLGDG 208 (653)
T ss_pred CCEEEEEEcCCCeEEEEEEEEeCC
Confidence 556888999999999999887533
No 247
>PLN02920 pantothenate kinase 1
Probab=46.11 E-value=1.7e+02 Score=30.17 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=64.1
Q ss_pred CceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCC---CCCCCCCCcEEEEc--CCC-
Q psy9709 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLY---APYWRKDARGVICG--MTQ- 474 (500)
Q Consensus 402 p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r---~P~~~~~~~g~f~G--l~~- 474 (500)
|+.|.-.|++.-||.++-=+..++....+|+++-++|++-. ..-++ .+-.+.|.. .+-...+.-++-|| ...
T Consensus 184 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sfdEll~lA~~Gd~~nvDl-lVgDIYGg~~y~~~gL~~d~iASsFGKv~~~~ 262 (398)
T PLN02920 184 DGKFERVSGTSVGGGTFWGLGKLLTKCKSFDELLELSHQGNNRVIDM-LVGDIYGGMDYSKIGLSSTTIASSFGKAISDN 262 (398)
T ss_pred CCcEEEEcccccchHhHHHHHHHHcCCCCHHHHHHHHhCCCccccCc-eeccccCCCCCCCCCCCccceeeccCcccccc
Confidence 56777667777777777666667766688999999887643 23344 457777632 23345666777667 332
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHH
Q psy9709 475 ----FTTKGHIIRAALEAICFQTRDI 496 (500)
Q Consensus 475 ----~~~~~~l~rAv~Egia~~~~~~ 496 (500)
+.+++|++|+++--|++++-++
T Consensus 263 ~~~~~~s~eDia~SLL~mVs~nIgqi 288 (398)
T PLN02920 263 KELEDYKPEDVARSLLRMISNNIGQI 288 (398)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999998887654
No 248
>KOG2707|consensus
Probab=45.99 E-value=40 Score=33.83 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=53.5
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEEEE-eeeeeecCCCCcc-ccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVSHS-MDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~~~-~~~~~~~~~~g~~-e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
.++||.-.-.-+-++|+|+ .+++++... ..+.......|-. .+-.+.--+.+...+++++.. ++..+.++.+|+
T Consensus 33 ~VLgIETSCDDTavaVVd~-~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~a---a~~~p~dldaIA 108 (405)
T KOG2707|consen 33 KVLGIETSCDDTAVAVVDE-FSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDA---AGLSPKDLDAIA 108 (405)
T ss_pred eeeeEecccCcceeeeecc-cccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH---cCCCcccceeEE
Confidence 3888987777899999998 898887632 1111112122211 111233456677778888877 899999999999
Q ss_pred EcCCcceeE
Q psy9709 103 ITNQRETTV 111 (500)
Q Consensus 103 is~~~~~~v 111 (500)
|+. +.++.
T Consensus 109 VT~-gPGl~ 116 (405)
T KOG2707|consen 109 VTR-GPGLP 116 (405)
T ss_pred Eec-CCCce
Confidence 986 44443
No 249
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=45.84 E-value=14 Score=40.34 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=20.8
Q ss_pred CCEEEEEeccCCCceEEEEeCCCCe
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQE 176 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G~ 176 (500)
...++.+|+|++++-+.++...+|.
T Consensus 187 ~~~vlv~D~Gggt~dvs~~~~~~~~ 211 (602)
T PF00012_consen 187 GKTVLVVDFGGGTFDVSVVEFSNGQ 211 (602)
T ss_dssp EEEEEEEEEESSEEEEEEEEEETTE
T ss_pred ccceeccccccceEeeeehhccccc
Confidence 4578999999999999999876553
No 250
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=18 Score=39.43 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.5
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
....++++|+|+...-+.|++...|
T Consensus 170 ~~~~vlV~DlGGGTfDvSll~~~~g 194 (579)
T COG0443 170 KEKTVLVYDLGGGTFDVSLLEIGDG 194 (579)
T ss_pred CCcEEEEEEcCCCCEEEEEEEEcCC
Confidence 5678999999999999999998645
No 251
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.81 E-value=35 Score=37.82 Aligned_cols=32 Identities=13% Similarity=-0.044 Sum_probs=25.0
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeec
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDI 185 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~ 185 (500)
.+.+|||+|+|.+-++++|.+ +.++...+..+
T Consensus 2 ~~~iGID~GGTfTDaV~~~~~-~g~~~~~K~lT 33 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDED-GGVLATIKVLT 33 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeCC-CCEEEEEEccC
Confidence 467999999999999999976 44666555544
No 252
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=44.46 E-value=59 Score=30.63 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=43.2
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 233 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs 233 (500)
.+|+||..|..+-+++++.++++++.+...+.+. ...+. +.-.+++++.+ .+++..++.+|.|+
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~r---------~hse~----l~~~i~~ll~~---~~~~~~dld~iav~ 65 (220)
T COG1214 2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLKR---------NHAER----LMPMIDELLKE---AGLSLQDLDAIAVA 65 (220)
T ss_pred cEEEEEcChhhhhhheeecCCCcEEEEEEEeccc---------cHHHH----HHHHHHHHHHH---cCCCHHHCCEEEEc
Confidence 3789999999888888887668888776554431 11222 33444555543 45667789999886
Q ss_pred CC
Q psy9709 234 NQ 235 (500)
Q Consensus 234 ~~ 235 (500)
..
T Consensus 66 ~G 67 (220)
T COG1214 66 KG 67 (220)
T ss_pred cC
Confidence 43
No 253
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=44.43 E-value=18 Score=39.58 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=16.6
Q ss_pred EEEEeccCCCceEEEEeC
Q psy9709 155 IGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~ 172 (500)
++|||+|||++++++++.
T Consensus 2 viGIDlGtt~s~va~~~~ 19 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEG 19 (595)
T ss_pred EEEEEeCcccEEEEEEEC
Confidence 689999999999999984
No 254
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=44.43 E-value=28 Score=33.77 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=33.5
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHH
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQ 207 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~ 207 (500)
+|||-||.|.-+.-||-++|+++-....+...+ +.+|.-+.+-+.
T Consensus 1 ~GIDpGT~smdvfgfdDEsg~vi~~~~I~rdeV-------tk~p~iiv~ii~ 45 (374)
T COG2441 1 IGIDPGTGSMDVFGFDDESGNVIVDVAIPRDEV-------TKSPRIIVDIIE 45 (374)
T ss_pred CCcCCCCCceeEEEEecCCCCEEEEEecCHHHh-------ccCchHHHHHHH
Confidence 489999999999999988899998777776653 455555444443
No 255
>PRK13410 molecular chaperone DnaK; Provisional
Probab=44.36 E-value=29 Score=38.55 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=19.2
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEV 178 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi 178 (500)
.++|||+|||++++++++. |+..
T Consensus 3 ~viGIDlGTt~s~va~~~~--g~~~ 25 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEG--GKPV 25 (668)
T ss_pred cEEEEEeCCCcEEEEEEEC--CeEE
Confidence 5799999999999999984 6543
No 256
>CHL00094 dnaK heat shock protein 70
Probab=44.29 E-value=22 Score=39.20 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEEeccCCCceEEEEeCCCCeE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEE 177 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~v 177 (500)
+++|||+|||++++++++. |++
T Consensus 3 ~viGIDlGTt~s~va~~~~--g~~ 24 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEG--GKP 24 (621)
T ss_pred ceEEEEeCcccEEEEEEEC--CEE
Confidence 5899999999999999973 644
No 257
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=43.85 E-value=21 Score=39.52 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.9
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
...++.+|+|+...-+.++....|
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~g 234 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAGG 234 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 567899999999999999987534
No 258
>PRK13411 molecular chaperone DnaK; Provisional
Probab=43.74 E-value=23 Score=39.24 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=18.7
Q ss_pred EEEEEeccCCCceEEEEeCCCCeE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEE 177 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~v 177 (500)
.++|||+|||++++++++. |+.
T Consensus 3 ~viGIDlGTt~s~va~~~~--g~~ 24 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEG--GKP 24 (653)
T ss_pred cEEEEEeCcccEEEEEEEC--CEE
Confidence 5899999999999999974 643
No 259
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=43.29 E-value=37 Score=34.65 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=47.6
Q ss_pred EEEEEecCCC--cceEEEEeCCCCc-----EEEEEEeeeeeecCC------CCccccCHH-------HHHHHHHHHHHHH
Q psy9709 25 LIGVIDEGTR--TVRFAIISALTQE-----EVVSHSMDISTISPQ------EGWAEQDPM-------EILQAVQTTMDRA 84 (500)
Q Consensus 25 ~i~giDiGtt--~~k~~v~d~~~g~-----~l~~~~~~~~~~~~~------~g~~e~d~~-------~~~~~~~~~i~~~ 84 (500)
+++|+=-||| ++=+++++. +|+ ++...+.+|+....+ .. ...+++ ++=+.+.++++++
T Consensus 3 ~~iGlMSGTSlDGiD~alv~~-~g~~~~~~~~~~~~~py~~~lr~~l~~~~~~-~~~~~~~l~~l~~~lg~~~a~av~~~ 80 (365)
T PRK09585 3 RYIGLMSGTSLDGVDAALVEI-DGEGTKVELLASATVPYPDELRAALLALLQG-GADELERLAELDTALGRLFAEAVNAL 80 (365)
T ss_pred eEEEeccccChhhhhEEEEEE-eCCCcceEEeeeeEeeCCHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888888 677888886 552 444556666422100 00 011122 2445566677777
Q ss_pred HHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 85 IEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 85 ~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
+++ .++++++|.+||.-+|.
T Consensus 81 ~~~---~~l~~~~id~IgsHGQT 100 (365)
T PRK09585 81 LAE---AGLSPEDIDAIGSHGQT 100 (365)
T ss_pred HHH---cCCCccCccEEEeCCcc
Confidence 776 89999999999988775
No 260
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=43.28 E-value=18 Score=39.53 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.5
Q ss_pred EEEEeccCCCceEEEEeC
Q psy9709 155 IGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~ 172 (500)
++|||+||+++++++++.
T Consensus 1 viGID~Gt~~~~va~~~~ 18 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKN 18 (602)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEeccCCEEEEEEEe
Confidence 589999999999999984
No 261
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=43.25 E-value=22 Score=39.17 Aligned_cols=21 Identities=29% Similarity=0.188 Sum_probs=18.2
Q ss_pred CCEEEEEeccCCCceEEEEeC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~ 172 (500)
..+++|||+|||++++++++.
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~ 38 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRS 38 (616)
T ss_pred CCeEEEEEeccccEEEEEEEC
Confidence 447899999999999999974
No 262
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=43.12 E-value=68 Score=32.70 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=21.9
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
.+|+|..|+||+|..+||..+++++.
T Consensus 2 ~iLviN~GSSSlKf~l~~~~~~~~~~ 27 (396)
T COG0282 2 KILVINAGSSSLKFQLFDMPELEVLA 27 (396)
T ss_pred eEEEEecCcchheeeEeccCcccchh
Confidence 47889999999999999987666653
No 263
>PRK11678 putative chaperone; Provisional
Probab=42.86 E-value=19 Score=37.88 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=15.6
Q ss_pred EEEEecCCCcceEEEEeC
Q psy9709 26 IGVIDEGTRTVRFAIISA 43 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~ 43 (500)
++|||+||||.-+++++.
T Consensus 2 ~iGID~GTtNs~va~~~~ 19 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRD 19 (450)
T ss_pred eEEEecCccceeeEEeeC
Confidence 356999999999999974
No 264
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=42.63 E-value=25 Score=38.93 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=17.4
Q ss_pred EEEEEeccCCCceEEEEeC
Q psy9709 154 LIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~ 172 (500)
.++|||+|||++.+++++.
T Consensus 28 ~viGIDLGTTnS~vA~~~~ 46 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDG 46 (657)
T ss_pred eEEEEEeCcCeEEEEEEeC
Confidence 5899999999999999984
No 265
>PRK13410 molecular chaperone DnaK; Provisional
Probab=42.42 E-value=24 Score=39.21 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.8
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
...++.+|+|+.+.-+.++....|
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~g 209 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGNG 209 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcCC
Confidence 567899999999999999887534
No 266
>PRK13328 pantothenate kinase; Reviewed
Probab=41.86 E-value=26 Score=33.90 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=19.7
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVVS 51 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~~ 51 (500)
+++ ||+|-|.+|.+++|. .++++..
T Consensus 3 ~Ll-iDiGNTriKwa~~~~-~~~~~~~ 27 (255)
T PRK13328 3 ILL-IDAGNSRIKWAWADA-GRPWVHS 27 (255)
T ss_pred EEE-EEeCccceeEEEEcC-CCceeec
Confidence 455 999999999999996 5566543
No 267
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=41.30 E-value=23 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.268 Sum_probs=17.0
Q ss_pred EEEEEeccCCCceEEEEeC
Q psy9709 154 LIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~ 172 (500)
.++|||+|||++++++++.
T Consensus 42 ~viGIDlGTt~s~va~~~~ 60 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEG 60 (663)
T ss_pred cEEEEEECcccEEEEEEeC
Confidence 4799999999999999873
No 268
>PRK14878 UGMP family protein; Provisional
Probab=40.99 E-value=79 Score=31.69 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=43.2
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
||||.-+.-+-++++| + ++++....... .....|.. +.....-.+.+...+++++++ ++++.++|.+|+++.
T Consensus 1 l~iets~~~~s~al~~-~-~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~---a~~~~~did~Iavt~ 73 (323)
T PRK14878 1 LGIESTAHTLGVGIVK-E-DKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLRKALEK---AGISIEDIDAVAVSQ 73 (323)
T ss_pred CEEecCCcccEEEEEE-C-CEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence 5788777777888988 3 66775544332 12222332 222223334455566666654 578888999999975
No 269
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=40.76 E-value=20 Score=35.32 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=18.4
Q ss_pred EEEEeccCCCceEEEEeCCCCeE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEE 177 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~v 177 (500)
++|||-|||.+|.++++.+ ++.
T Consensus 1 ~vGiDHGTtgi~f~~~~~~-~~~ 22 (326)
T TIGR03281 1 FVGIDHGTTGIRFAIIDGE-KEP 22 (326)
T ss_pred CccccCCCccEEEEEecCC-cce
Confidence 4799999999999999864 543
No 270
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.67 E-value=77 Score=30.58 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=31.5
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 82 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~ 82 (500)
++.||+|+..+-+++||+ ++|.+.-...+. .-+|+++-+.+.+..+
T Consensus 229 alvVd~GngHttaalvde--dRI~gv~EHHT~---------~Lspekled~I~rf~~ 274 (342)
T COG4012 229 ALVVDYGNGHTTAALVDE--DRIVGVYEHHTI---------RLSPEKLEDQIIRFVE 274 (342)
T ss_pred eEEEEccCCceEEEEecC--CeEEEEeecccc---------cCCHHHHHHHHHHHHh
Confidence 344999999999999997 488876544443 2356666655555443
No 271
>PRK11678 putative chaperone; Provisional
Probab=40.09 E-value=25 Score=37.09 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=16.0
Q ss_pred EEEEeccCCCceEEEEe
Q psy9709 155 IGVIDEGTRTVRFAIIS 171 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d 171 (500)
++|||+||||+-+++++
T Consensus 2 ~iGID~GTtNs~va~~~ 18 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR 18 (450)
T ss_pred eEEEecCccceeeEEee
Confidence 58999999999999998
No 272
>PLN03184 chloroplast Hsp70; Provisional
Probab=40.02 E-value=25 Score=39.22 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=20.1
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCC
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
....++.+|+|+.+.-+.++....|
T Consensus 222 ~~~~vlV~DlGgGT~DvSi~~~~~~ 246 (673)
T PLN03184 222 SNETILVFDLGGGTFDVSVLEVGDG 246 (673)
T ss_pred CCCEEEEEECCCCeEEEEEEEecCC
Confidence 3457888999999999999887533
No 273
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=39.35 E-value=33 Score=37.47 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=18.5
Q ss_pred CEEEEEeccCCCceEEEEeCC
Q psy9709 153 PLIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~ 173 (500)
..++|||+|||++.+++++..
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~ 25 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGG 25 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCC
Confidence 468999999999999999963
No 274
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=39.14 E-value=74 Score=28.00 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=18.2
Q ss_pred EEEEeccC----CCceEEEEeCCCCeEEEEeee
Q psy9709 155 IGVIDEGT----RTVRFAIISALTQEEVVSHSM 183 (500)
Q Consensus 155 ~lgIDiGT----ts~k~~l~d~~~G~vi~~~~~ 183 (500)
++++-.|. ..+.++++|.+ |+++...+.
T Consensus 7 Vla~~~g~g~~~~~~~~v~ld~~-G~v~d~~~~ 38 (150)
T PF14639_consen 7 VLALSWGSGDGDDAVFCVVLDEN-GEVLDHLKL 38 (150)
T ss_dssp EEEEE-TT--TTS-EEEEEE-TT-S-EEEEEEE
T ss_pred EEEEEcCCCCCCCCEEEEEECCC-CcEEEEEEE
Confidence 56777764 46899999985 999987655
No 275
>PRK13322 pantothenate kinase; Reviewed
Probab=38.48 E-value=26 Score=33.60 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=18.9
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVV 50 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~ 50 (500)
++.||+|-|++|.++||. +++++.
T Consensus 2 ~L~IDiGNT~iK~~l~~~-~~~~~~ 25 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN-GGQIIE 25 (246)
T ss_pred EEEEEeCCCcEEEEEEcC-CCchhh
Confidence 345999999999999995 455543
No 276
>PRK07157 acetate kinase; Provisional
Probab=38.11 E-value=44 Score=34.40 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=20.7
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
+|+|..|+||+|..+||..+.+++.
T Consensus 5 iLvlN~GSSSlKf~lf~~~~~~~l~ 29 (400)
T PRK07157 5 ILVINAGSSSIKWQLFDKENLNLIA 29 (400)
T ss_pred EEEEECChHhheeEEEECCCCcEEE
Confidence 8999999999999999975445553
No 277
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=38.06 E-value=70 Score=27.40 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=23.2
Q ss_pred EEEecCCCcceEEEEeCCCCcEEEEEEeee
Q psy9709 27 GVIDEGTRTVRFAIISALTQEEVVSHSMDI 56 (500)
Q Consensus 27 ~giDiGtt~~k~~v~d~~~g~~l~~~~~~~ 56 (500)
+|||+|....-++++|. .|+++.....+.
T Consensus 2 vGiDv~k~~~~v~v~~~-~~~~~~~~~~~~ 30 (144)
T PF01548_consen 2 VGIDVSKDTHDVCVIDP-NGEKLRRFKFEN 30 (144)
T ss_pred EEEEcccCeEEEEEEcC-CCcEEEEEEEec
Confidence 56999999999999998 886666555444
No 278
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=37.77 E-value=1.2e+02 Score=30.63 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=47.0
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCC-CeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-GWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 231 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~-g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~ 231 (500)
.+|||.-----+-+++++.+ + +++-....+-..++.- |.. |.-...-.+.+..++++++++ ++++.++|.+|+
T Consensus 2 ~iLGIEtScDeT~vaIv~~~-~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~e---A~~~~~dID~IA 76 (342)
T COG0533 2 IILGIETSCDETGVAIVDEE-K-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAE---AGVSLEDIDAIA 76 (342)
T ss_pred eEEEEEcccccceeEEEecc-C-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCcccCCEEE
Confidence 36677744445567888854 4 5543322222222222 332 555566677778888888765 688889999999
Q ss_pred EcC
Q psy9709 232 ITN 234 (500)
Q Consensus 232 vs~ 234 (500)
+|.
T Consensus 77 ~T~ 79 (342)
T COG0533 77 VTA 79 (342)
T ss_pred Eec
Confidence 975
No 279
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=37.10 E-value=23 Score=38.91 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.7
Q ss_pred CCEEEEEeccCCCceEEEEeCCCC
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G 175 (500)
...++.+|+|+.++-+.++....|
T Consensus 180 ~~~vlV~DlGgGT~DvSi~~~~~~ 203 (599)
T TIGR01991 180 EGIYAVYDLGGGTFDVSILKLTKG 203 (599)
T ss_pred CCEEEEEEcCCCeEEEEEEEEcCC
Confidence 456899999999999999986533
No 280
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=35.64 E-value=2.9e+02 Score=23.81 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=18.0
Q ss_pred EEEEeccCCCceEEEEeCCCCeE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEE 177 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~v 177 (500)
+||||+|+..+=+++-|.. +.+
T Consensus 6 iLalD~G~kriGvAv~d~~-~~~ 27 (138)
T PRK00109 6 ILGLDVGTKRIGVAVSDPL-GGT 27 (138)
T ss_pred EEEEEeCCCEEEEEEecCC-CCE
Confidence 8999999999989888863 533
No 281
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=35.49 E-value=32 Score=31.89 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=17.6
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
+|.||+|.|++|.+++|. .+++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~--~~~~~ 23 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG--DKLID 23 (206)
T ss_dssp EEEEEE-SSEEEEEEEET--TEEEE
T ss_pred CEEEEECCCeEEEEEEEC--CEEEe
Confidence 478999999999999995 34444
No 282
>PRK12379 propionate/acetate kinase; Provisional
Probab=35.35 E-value=59 Score=33.50 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=22.8
Q ss_pred CCEEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 152 VPLIGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 152 ~~~~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
.+++|+|..|+||+|..+||..+.+++.
T Consensus 4 ~~~iLvlN~GSSSlK~~l~~~~~~~~l~ 31 (396)
T PRK12379 4 FPVVLVINCGSSSIKFSVLDASDCEVLM 31 (396)
T ss_pred CCEEEEEECChHhheEEEEECCCCceEE
Confidence 4689999999999999999975345553
No 283
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=35.19 E-value=1.9e+02 Score=25.30 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.2
Q ss_pred EEEEeccCCCceEEEEeCCCC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQ 175 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G 175 (500)
+||||-|++++=.++++.+++
T Consensus 2 ILGIDPGl~~~G~av~~~~~~ 22 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGR 22 (154)
T ss_pred EEEEccCcCceEEEEEEeeCC
Confidence 689999999999999987533
No 284
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=35.08 E-value=1.5e+02 Score=26.00 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=29.6
Q ss_pred EEEEeccCCCceEEEEeCCCCe--EEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHH
Q psy9709 155 IGVIDEGTRTVRFAIISALTQE--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~--vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~ 217 (500)
+||||-|++++-.++++.+.++ .+......++ . ..+..+=+..+.+.+.+++++.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G~I~t~-----~---~~~~~~Rl~~I~~~l~~li~~~ 57 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYGTIKTS-----S---KDSLPERLKEIYEELEELIEEY 57 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEEEEE-----------S--HHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeCeEECC-----C---CCCHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999985233 2333322222 1 1123333445566677777653
No 285
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=34.03 E-value=44 Score=32.88 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=19.4
Q ss_pred eccCCCceEEEEeCCCCeEEEEeeeeccc
Q psy9709 159 DEGTRTVRFAIISALTQEEVVSHSMDIST 187 (500)
Q Consensus 159 DiGTts~k~~l~d~~~G~vi~~~~~~~~~ 187 (500)
|-||||.|+-++|.+ |+++...+.+...
T Consensus 1 DWGTSnlR~~l~~~~-g~vl~~~~~~~Gi 28 (287)
T PF05035_consen 1 DWGTSNLRAWLMDED-GQVLAERSSPVGI 28 (287)
T ss_dssp EE-SS-EEEEEE-CT-TEEEEEEEES--C
T ss_pred CCchhhhhhheecCC-CcEEeeecCCcCh
Confidence 779999999999975 9999887766553
No 286
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=33.71 E-value=30 Score=37.97 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=16.1
Q ss_pred EEEEeccCCCceEEEEeC
Q psy9709 155 IGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~ 172 (500)
++|||+|||++.+++++.
T Consensus 1 ~iGIDlGTtns~va~~~~ 18 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRS 18 (599)
T ss_pred CEEEEEccccEEEEEEEC
Confidence 379999999999999984
No 287
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=33.46 E-value=66 Score=27.72 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=18.6
Q ss_pred EEEEEecCCCcceEEEEeCCCCc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQE 47 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~ 47 (500)
.++|||.|+..|=+++-|. .+.
T Consensus 2 riL~lD~G~kriGiAvsd~-~~~ 23 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP-LGI 23 (135)
T ss_dssp EEEEEEECSSEEEEEEEET-TTS
T ss_pred eEEEEEeCCCeEEEEEecC-CCC
Confidence 3677999999999999997 553
No 288
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=32.62 E-value=33 Score=39.01 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.0
Q ss_pred CEEEEEeccCCCceEEEEeCC
Q psy9709 153 PLIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~ 173 (500)
+|+||+||||+||=-+++|.+
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred CceeEEeecccceeEEEEecc
Confidence 478999999999999999965
No 289
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=32.51 E-value=37 Score=34.30 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=49.6
Q ss_pred CcEEEEEecCCC--cceEEEEeCCCC-cEE---EEEEeeeeeecCC------------CCccccCHHHHHHHHHHHHHHH
Q psy9709 23 VPLIGVIDEGTR--TVRFAIISALTQ-EEV---VSHSMDISTISPQ------------EGWAEQDPMEILQAVQTTMDRA 84 (500)
Q Consensus 23 ~~~i~giDiGtt--~~k~~v~d~~~g-~~l---~~~~~~~~~~~~~------------~g~~e~d~~~~~~~~~~~i~~~ 84 (500)
...++|+=-||+ ++.+++++. +| +.+ .....+|+....+ ..+..+=-+++-....++++++
T Consensus 4 ~~~~iG~msgTslDgiD~alv~~-~ge~~~~~~~~~~~p~p~~lr~~~~~l~~~~a~~~~~~~~l~~~l~~~~a~av~~l 82 (371)
T COG2377 4 PARYIGLMSGTSLDGIDAALVRI-DGERRVELGASLTRPYPPRLRQRLLALCAARADTLAELAELDRALALLHAQAVAAL 82 (371)
T ss_pred cceEEEecCCCCCcchhhhhhhc-ccchhhhcccCCcccCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888888 788899987 66 222 2333444321100 1111111234555566777777
Q ss_pred HHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 85 IEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 85 ~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
+++ .++.+++|.+||+-+|.
T Consensus 83 l~~---~~l~~~~i~~iG~HGQT 102 (371)
T COG2377 83 LAE---QGLLPRDIRAIGCHGQT 102 (371)
T ss_pred HHH---cCCCHHhCceeecCCcc
Confidence 777 89999999999988776
No 290
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=31.97 E-value=94 Score=25.65 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCc
Q psy9709 68 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 68 ~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~ 107 (500)
..++++.++.++.++++.++ ...+++++..+-+|...
T Consensus 15 nt~eeI~~at~eLl~~i~~~---N~~~pedv~sv~~svT~ 51 (125)
T COG4401 15 NTEEEILDATKELLEEIEEE---NITDPEDVVSVILSVTE 51 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHh---cCCChhheeeEEEEecc
Confidence 35789999999999999888 88899999999888655
No 291
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=31.87 E-value=1.5e+02 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEecCCCcceEEEEeCCCCcE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEE 48 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~ 48 (500)
++|||.|+-.|=+++-|. .+.+
T Consensus 6 iLalD~G~kriGvAv~d~-~~~~ 27 (138)
T PRK00109 6 ILGLDVGTKRIGVAVSDP-LGGT 27 (138)
T ss_pred EEEEEeCCCEEEEEEecC-CCCE
Confidence 677999999999999997 5644
No 292
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=31.63 E-value=36 Score=38.75 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.9
Q ss_pred EEEEEecCCCcceEEEEeCCCCc
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQE 47 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~ 47 (500)
|++|+||||+||=-+|+|. +.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~-d~~ 23 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVED-DYK 23 (805)
T ss_pred ceeEEeecccceeEEEEec-ccc
Confidence 5778999999999999997 543
No 293
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=31.42 E-value=44 Score=33.54 Aligned_cols=26 Identities=23% Similarity=0.050 Sum_probs=0.0
Q ss_pred EEEeccCCCceEEEEeCCCCeEEEEeee
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVVSHSM 183 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~~~~~ 183 (500)
+|||+||+++++ |...+|.++.+.+.
T Consensus 4 igIDLGT~~t~i--~~~~~Giv~~epSv 29 (326)
T PF06723_consen 4 IGIDLGTSNTRI--YVKGKGIVLNEPSV 29 (326)
T ss_dssp EEEEE-SSEEEE--EETTTEEEEEEES-
T ss_pred eEEecCcccEEE--EECCCCEEEecCcE
No 294
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=31.33 E-value=45 Score=36.52 Aligned_cols=19 Identities=32% Similarity=0.253 Sum_probs=16.9
Q ss_pred CEEEEEeccCCCceEEEEe
Q psy9709 153 PLIGVIDEGTRTVRFAIIS 171 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d 171 (500)
..++|||+|||++.++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 4689999999999999886
No 295
>PLN03184 chloroplast Hsp70; Provisional
Probab=31.05 E-value=44 Score=37.25 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=17.1
Q ss_pred EEEEEeccCCCceEEEEeC
Q psy9709 154 LIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~ 172 (500)
.++|||+|||++++++++.
T Consensus 40 ~viGIDlGTt~s~va~~~~ 58 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEG 58 (673)
T ss_pred CEEEEEeCcCcEEEEEEEC
Confidence 4799999999999999974
No 296
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=30.97 E-value=1.2e+02 Score=25.15 Aligned_cols=24 Identities=4% Similarity=0.014 Sum_probs=19.5
Q ss_pred CCCcceEEEEeCCCCcEEEEEEeee
Q psy9709 32 GTRTVRFAIISALTQEEVVSHSMDI 56 (500)
Q Consensus 32 Gtt~~k~~v~d~~~g~~l~~~~~~~ 56 (500)
.-|++|+-|||. +|++|+....-+
T Consensus 15 ~Pt~~RARlyd~-dG~Ll~DSr~l~ 38 (112)
T PF13756_consen 15 SPTRTRARLYDP-DGNLLADSRVLY 38 (112)
T ss_pred CCCCceEEEECC-CCCEEeeccccc
Confidence 367999999998 999998665544
No 297
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.97 E-value=6.5e+02 Score=27.46 Aligned_cols=112 Identities=21% Similarity=0.076 Sum_probs=63.9
Q ss_pred CCCccccCHHHHHHHHHHHHHHH----HHHHHhCCCCCCCeeEEEEcCCcceeEEeeCCCCCccccccccCCccccCCC-
Q psy9709 62 QEGWAEQDPMEILQAVQTTMDRA----IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYNTP- 136 (500)
Q Consensus 62 ~~g~~e~d~~~~~~~~~~~i~~~----~~~~~~~~~~~~~i~~Igis~~~~~~v~~d~~~g~pl~p~i~w~d~~~~~~t- 136 (500)
++|...|+ .+-+.+..++++. -+.|..++++.+-..-=+-.+...+...|=+ .-+-+.+++.=++.+-.+..
T Consensus 149 g~GGwSq~--RY~R~vh~av~~~~reIee~L~~agldyDl~vr~~~gGi~~a~F~VyA-~re~l~g~V~~m~~~Dv~V~I 225 (652)
T COG2433 149 GPGGWSQN--RYRRRVHGAVKRVVREIEEKLDEAGLDYDLEVRESYGGISRAEFTVYA-PRERLPGVVKPMRGGDVQVRI 225 (652)
T ss_pred CCCCccHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEeeccCccceeEEEEEc-ChhhhhhhcccccCCceEEEE
Confidence 44444443 3444444444443 3444458888877777777777777777766 35666666655422221111
Q ss_pred -------CCCCCCCCCccccccCCEEEEEeccCCCceEEEEeCCCCeEEEEeee
Q psy9709 137 -------PEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSM 183 (500)
Q Consensus 137 -------~~~~~~~~n~~~~~~~~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~ 183 (500)
-.| .+ .......+++|||=|+|.-- +++|.+ |+++...+.
T Consensus 226 ~pV~r~rief--~p---l~~~r~~lIVGIDPGiTtgi-Avldld-Gevl~~~S~ 272 (652)
T COG2433 226 EPVERDRIEF--VP---LRPERRSLIVGIDPGITTGI-AVLDLD-GEVLDLESR 272 (652)
T ss_pred EEhhhccccc--cc---CcccccceEEEeCCCceeeE-EEEecC-CcEEeeecc
Confidence 112 00 01122358999999988554 456986 999976544
No 298
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=30.66 E-value=35 Score=34.19 Aligned_cols=21 Identities=33% Similarity=0.200 Sum_probs=17.2
Q ss_pred CEEEEEeccCCCceEEEEeCC
Q psy9709 153 PLIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~ 173 (500)
..++.+|+|...+-+.++..+
T Consensus 150 ~~~lVvDiG~gttdvs~v~~~ 170 (333)
T TIGR00904 150 TGSMVVDIGGGTTEVAVISLG 170 (333)
T ss_pred ceEEEEEcCCCeEEEEEEEeC
Confidence 456889999999999998753
No 299
>KOG1386|consensus
Probab=30.50 E-value=1.9e+02 Score=30.51 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=45.6
Q ss_pred cEEEEEecCCCcceEEEEeC--CCCc-EEEEEEeeeeeecCCCC--ccccCHHHHHHHHHHHHHHHHHHHH
Q psy9709 24 PLIGVIDEGTRTVRFAIISA--LTQE-EVVSHSMDISTISPQEG--WAEQDPMEILQAVQTTMDRAIEKLS 89 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~--~~g~-~l~~~~~~~~~~~~~~g--~~e~d~~~~~~~~~~~i~~~~~~~~ 89 (500)
.|=++||.|+|.+|.-||-- ++|+ ++....+.+.-...+|| --..+|+..-..+..+++.+.+++.
T Consensus 9 kYgiviDaGSSgTrl~Vy~w~~~~g~~~~~i~~~~~~~~k~~PGiSsfa~nP~~a~~~l~pLlefA~~~IP 79 (501)
T KOG1386|consen 9 KYGIVIDAGSSGTRLFVYKWPAESGNPLTGIVGQIYDCLKLGPGISSFADNPEGASVYLTPLLEFAKEHIP 79 (501)
T ss_pred eEEEEEecCCCCceEEEEeecccCCCcccCccchhhcccccCCChhhhccChhhhHHHHHHHHHHHHhhCC
Confidence 45455999999999999962 2566 45444444444444555 3456899999999888888776654
No 300
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=30.24 E-value=83 Score=26.94 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=22.6
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeee
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD 184 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~ 184 (500)
++|||+|....-++++|.. |+.......+
T Consensus 1 ~vGiDv~k~~~~v~v~~~~-~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPN-GEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcCC-CcEEEEEEEe
Confidence 5899999999999999975 7555544443
No 301
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=30.21 E-value=77 Score=32.77 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=20.1
Q ss_pred EEEEeccCCCceEEEEeCCC-CeEE
Q psy9709 155 IGVIDEGTRTVRFAIISALT-QEEV 178 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~-G~vi 178 (500)
+|+|..|+||+|..+||..+ .+++
T Consensus 6 iLvlN~GSSSlKf~lf~~~~~~~~l 30 (404)
T TIGR00016 6 ILVINAGSSSLKFALFDYTNGETVL 30 (404)
T ss_pred EEEEECChHhheEEEEecCCCCceE
Confidence 89999999999999999754 3444
No 302
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=29.91 E-value=39 Score=33.89 Aligned_cols=22 Identities=18% Similarity=-0.028 Sum_probs=16.8
Q ss_pred EEEeccCCCceEEEEeCCCCeEEE
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
+|||+||+++++...+ +|.++.
T Consensus 5 ~giDlGt~~s~i~~~~--~~~~~~ 26 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG--RGIVLN 26 (333)
T ss_pred eEEecCcceEEEEECC--CCEEEe
Confidence 7999999999987643 365553
No 303
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=29.46 E-value=66 Score=31.40 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=34.9
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCcccc--CHHHHHHHHHHHHHHHH
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQ--DPMEILQAVQTTMDRAI 85 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~--d~~~~~~~~~~~i~~~~ 85 (500)
..++ +|+||.|+..++++. +++....+.|+-...-...+... ...+..+.+.+.+++.+
T Consensus 113 ~~lv-iDIGGGStEl~~~~~--~~~~~~~Sl~lG~vrl~e~~~~~~~~~~~~~~~~~~~i~~~l 173 (285)
T PF02541_consen 113 NGLV-IDIGGGSTELILFEN--GKVVFSQSLPLGAVRLTERFFKSDPPTAEELEKLREFIRKEL 173 (285)
T ss_dssp SEEE-EEEESSEEEEEEEET--TEEEEEEEES--HHHHHHHHSGCSS-HHHHHHHHHHHHHHHH
T ss_pred CEEE-EEECCCceEEEEEEC--CeeeEeeeeehHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Confidence 3455 999999999999984 88988888877432211111111 22345555555555544
No 304
>COG1647 Esterase/lipase [General function prediction only]
Probab=29.37 E-value=80 Score=29.80 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=27.1
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 65 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 65 ~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
.-+..|++||+.+++..+++.++ ..++|..+|+|
T Consensus 60 fl~t~~~DW~~~v~d~Y~~L~~~------gy~eI~v~GlS 93 (243)
T COG1647 60 FLKTTPRDWWEDVEDGYRDLKEA------GYDEIAVVGLS 93 (243)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHc------CCCeEEEEeec
Confidence 34567999999999999998754 24678888888
No 305
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=29.35 E-value=1.8e+02 Score=27.96 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=42.8
Q ss_pred CEEEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
.=+++||+|.+.+-++++. + +++.+.-..-+. ..+++.+++-+.+. ...-++.++| +
T Consensus 167 ~~~~~vniGN~HTlaa~v~-~-~rI~GvfEHHT~---------~l~~~kL~~~l~~l--------~~G~Lt~eEV----f 223 (254)
T PF08735_consen 167 EGIIVVNIGNGHTLAALVK-D-GRIYGVFEHHTG---------MLTPEKLEEYLERL--------RDGTLTNEEV----F 223 (254)
T ss_pred CCeEEEEeCCccEEEEEEe-C-CEEEEEEecccC---------CCCHHHHHHHHHHH--------HcCCCChHHh----h
Confidence 3467899999999999996 3 888876544333 34566555444332 2233455677 6
Q ss_pred cCCCceeEE
Q psy9709 233 TNQRETTVV 241 (500)
Q Consensus 233 s~~~~~~v~ 241 (500)
...||+...
T Consensus 224 ~dgGHGa~~ 232 (254)
T PF08735_consen 224 DDGGHGAYV 232 (254)
T ss_pred cCCCCceee
Confidence 677787776
No 306
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=28.81 E-value=93 Score=26.13 Aligned_cols=36 Identities=33% Similarity=0.537 Sum_probs=28.3
Q ss_pred EChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709 197 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 235 (500)
Q Consensus 197 ~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~ 235 (500)
.++++++++..+.+.+++++ .++++++|.+|-||..
T Consensus 13 n~~e~I~~at~eLl~~i~~~---N~l~~~dIvSi~FT~T 48 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILER---NELSPEDIVSIIFTVT 48 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHH---TT--GGGEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence 46789999999999999876 5788999999988755
No 307
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=28.76 E-value=45 Score=33.56 Aligned_cols=22 Identities=23% Similarity=0.033 Sum_probs=15.3
Q ss_pred EEEEeccCCCceEEEEeCCCCeEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEV 178 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi 178 (500)
.+|||.||++++ +++..+|.++
T Consensus 6 ~~giDlGt~~~~--i~~~~~~~~~ 27 (335)
T PRK13929 6 EIGIDLGTANIL--VYSKNKGIIL 27 (335)
T ss_pred eEEEEcccccEE--EEECCCcEEe
Confidence 389999999997 4554335433
No 308
>PHA02754 hypothetical protein; Provisional
Probab=28.50 E-value=1.4e+02 Score=21.53 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCCcceeEEeeC
Q psy9709 75 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDL 115 (500)
Q Consensus 75 ~~~~~~i~~~~~~~~~~~~~~~~i~~Igis~~~~~~v~~d~ 115 (500)
..+.++++++-+.|+++|+-.++|.+|-.|+ .-+|.+-+
T Consensus 14 K~Fke~MRelkD~LSe~GiYi~RIkai~~SG--dkIVVi~a 52 (67)
T PHA02754 14 KDFKEAMRELKDILSEAGIYIDRIKAITTSG--DKIVVITA 52 (67)
T ss_pred hHHHHHHHHHHHHHhhCceEEEEEEEEEecC--CEEEEEEc
Confidence 3456677777666666899889999998875 44666655
No 309
>PRK13322 pantothenate kinase; Reviewed
Probab=27.98 E-value=47 Score=31.89 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=18.5
Q ss_pred EEEEeccCCCceEEEEeCCCCeEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEV 178 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi 178 (500)
+|.||+|.|++|..+||.+ ++++
T Consensus 2 ~L~IDiGNT~iK~~l~~~~-~~~~ 24 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDNG-GQII 24 (246)
T ss_pred EEEEEeCCCcEEEEEEcCC-Cchh
Confidence 5789999999999999952 4443
No 310
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=27.79 E-value=1.2e+02 Score=26.48 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVV 50 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~ 50 (500)
.|++||+|+-|.-.++++. +++.+.
T Consensus 2 ii~sIDiGikNlA~~iie~-~~~~i~ 26 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEF-EGNKIR 26 (143)
T ss_pred eEEEEecCCCceeEEEEEc-CCCeEE
Confidence 5788999999999999998 665544
No 311
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=27.76 E-value=3.9e+02 Score=23.37 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=32.1
Q ss_pred EEEEecCCCc-----ceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRT-----VRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~-----~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
+++||+.||+ +--++|+. ++++-..-...+ ...++-|=-..+...++.++++
T Consensus 4 ~LslD~STs~~~~~gTG~A~~~~--~~~~~~si~~~~--------k~Ks~~ER~k~ias~Lk~ii~~ 60 (159)
T PF07066_consen 4 VLSLDFSTSSKKGEGTGWAFFKG--SDLVVGSIKAKH--------KSKSFFERAKSIASELKTIIQK 60 (159)
T ss_pred eEEEEEecccCCCCCceeEEecC--CeEEEeeeeecC--------cccCHHHHHHHHHHHHHHHHHH
Confidence 5679999998 88888873 666543332232 1124444445566677777766
No 312
>PLN02902 pantothenate kinase
Probab=27.64 E-value=3.4e+02 Score=31.02 Aligned_cols=94 Identities=15% Similarity=0.070 Sum_probs=63.2
Q ss_pred CceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCC---CCCCCCCCcEEEEc--CC--
Q psy9709 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLY---APYWRKDARGVICG--MT-- 473 (500)
Q Consensus 402 p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r---~P~~~~~~~g~f~G--l~-- 473 (500)
|+.|.-.|++.-||.++-=+..++....+|+++-++|.+-. ..-++ .+-.+.|.. .+-...+.-++-|| ..
T Consensus 233 ~~~~~RVgGTsIGGGT~~GL~~LLtg~~sFdEll~LA~~Gd~~~vDl-lVgDIYGg~~y~~~GL~~d~iASSFGKv~~~~ 311 (876)
T PLN02902 233 DGKFERVSGTNVGGGTYWGLGRLLTKCKSFDELLELSQRGDNSAIDM-LVGDIYGGMDYSKIGLSASTIASSFGKVISEN 311 (876)
T ss_pred CCcEEEecccccccHhHHHHHHHHcCCCCHHHHHHHHhcCCccccCe-eeccccCCCCcCCCCCCcchhhhccCcccccc
Confidence 46777667777777776666667666678999999987644 22344 457777642 12234555666566 22
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHH
Q psy9709 474 ---QFTTKGHIIRAALEAICFQTRDI 496 (500)
Q Consensus 474 ---~~~~~~~l~rAv~Egia~~~~~~ 496 (500)
.+.+++|++|+++--|++++-++
T Consensus 312 ~~~~~~s~eDiarSLL~mIs~NIGqi 337 (876)
T PLN02902 312 KELSDYRPEDISLSLLRMISYNIGQI 337 (876)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHH
Confidence 23569999999999999987765
No 313
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=27.57 E-value=82 Score=34.52 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.7
Q ss_pred EEEEEecCCCcceEEEEeCCCCcEEE
Q psy9709 25 LIGVIDEGTRTVRFAIISALTQEEVV 50 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d~~~g~~l~ 50 (500)
+++ ||+|-|.+|.++++. ++++.
T Consensus 340 ~Ll-iD~GNTriKwa~~~~--~~~~~ 362 (592)
T PRK13325 340 FLL-LDGGNSRLKWAWVEN--GTFAT 362 (592)
T ss_pred EEE-EEcCcCceeEEEEcC--Cceee
Confidence 455 999999999999995 56664
No 314
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=27.55 E-value=80 Score=32.69 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
|++|..|+||+|..|||....+.+....
T Consensus 3 iLvlN~GSSSlKf~lf~~~~~~~l~~G~ 30 (402)
T PRK00180 3 ILVLNAGSSSLKFQLIDMPNEEVLASGL 30 (402)
T ss_pred EEEEECChHhheEEEEECCCCcEEEEEE
Confidence 6779999999999999962335555443
No 315
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=27.50 E-value=45 Score=33.51 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=18.7
Q ss_pred EEEEEeccCCCceEEEEeCCCCeEEE
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
-++.+|+|...+-+.++.. |.++.
T Consensus 148 ~~lVvDiGggttdvsvv~~--g~~~~ 171 (336)
T PRK13928 148 GNMVVDIGGGTTDIAVLSL--GGIVT 171 (336)
T ss_pred eEEEEEeCCCeEEEEEEEe--CCEEE
Confidence 4678999999999999884 55553
No 316
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.11 E-value=3e+02 Score=24.57 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEEeccCCCceEEEEeCCCCe
Q psy9709 154 LIGVIDEGTRTVRFAIISALTQE 176 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~~G~ 176 (500)
.+||||=|++++=.++++.+ |+
T Consensus 3 ~iLGIDPgl~~tG~avi~~~-~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVE-GR 24 (164)
T ss_pred EEEEEccccCceeEEEEEec-CC
Confidence 47999999999999999975 64
No 317
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=26.95 E-value=43 Score=33.62 Aligned_cols=22 Identities=23% Similarity=0.028 Sum_probs=17.5
Q ss_pred EEEeccCCCceEEEEeCCCCeEEE
Q psy9709 156 GVIDEGTRTVRFAIISALTQEEVV 179 (500)
Q Consensus 156 lgIDiGTts~k~~l~d~~~G~vi~ 179 (500)
+|||.||+++++...+ +|.++.
T Consensus 6 ~gIDlGt~~~~i~~~~--~~~v~~ 27 (336)
T PRK13928 6 IGIDLGTANVLVYVKG--KGIVLN 27 (336)
T ss_pred eEEEcccccEEEEECC--CCEEEc
Confidence 7999999999997753 376665
No 318
>KOG1385|consensus
Probab=26.69 E-value=1.2e+02 Score=31.31 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=40.7
Q ss_pred cCCEEEEEeccCCCceEEEEeCCCC---eEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHH
Q psy9709 151 QVPLIGVIDEGTRTVRFAIISALTQ---EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217 (500)
Q Consensus 151 ~~~~~lgIDiGTts~k~~l~d~~~G---~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~ 217 (500)
.+.|.+-||.|+|.+|+-+|--.++ ........-+..+.|.---..-||++.-+.+...++.+.+.+
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~v 134 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFV 134 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhC
Confidence 3568899999999999999875433 111111111222223222346788887777777777766543
No 319
>PRK08557 hypothetical protein; Provisional
Probab=26.63 E-value=46 Score=34.68 Aligned_cols=60 Identities=8% Similarity=0.002 Sum_probs=39.4
Q ss_pred cccceeeccCCCHHHHHHHHhh-CCC-CccchhhcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709 250 LYNAIVWSDTRADNIVDQVLAK-FPD-QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK 312 (500)
Q Consensus 250 l~~~i~w~D~r~~~~~~~~~~~-~~~-~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 312 (500)
+.|...|.+. +..+-+.+. ++- ...+.=|...|+.+.|......+.-+++++||.|++..
T Consensus 316 i~PI~~Wt~~---dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~~e~~~l~~~~Pe~~~k~~ 377 (417)
T PRK08557 316 VFPILDWNSL---DIWSYIYLNDILYNPLYDKGFERIGCYLCPSALNSEFLRVKELYPELFNRWV 377 (417)
T ss_pred EEecccCCHH---HHHHHHHHcCCCCCchhhCCCCCCCccCCCCccHHHHHHHHHHCHHHHHHHH
Confidence 4688888775 333333332 221 01223345589888888888889999999999999764
No 320
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.90 E-value=2.2e+02 Score=27.56 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=39.7
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeeecccccCCCCeEEEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcC
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN 234 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~~~~~~~~~g~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~ 234 (500)
.+.||+|+..+-++++|. +++.+.-..-++ ..+++.+-+.| .++.. .....+.| .+-
T Consensus 229 alvVd~GngHttaalvde--dRI~gv~EHHT~---------~Lspekled~I----~rf~~----GeL~neeV----~~D 285 (342)
T COG4012 229 ALVVDYGNGHTTAALVDE--DRIVGVYEHHTI---------RLSPEKLEDQI----IRFVE----GELENEEV----YRD 285 (342)
T ss_pred eEEEEccCCceEEEEecC--CeEEEEeecccc---------cCCHHHHHHHH----HHHHh----ccccccee----ecC
Confidence 578999999999999995 577765433332 34565544444 33332 12334555 444
Q ss_pred CCceeEEEeC
Q psy9709 235 QRETTVVWDL 244 (500)
Q Consensus 235 ~~~~~v~~d~ 244 (500)
.||+.-.++.
T Consensus 286 gGHGch~~ev 295 (342)
T COG4012 286 GGHGCHNVEV 295 (342)
T ss_pred CCCceeeecc
Confidence 5666655554
No 321
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=24.88 E-value=2e+02 Score=29.32 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=42.1
Q ss_pred EEEEEeccCC--CceEEEEeCCCC---eEEEEeeeecccccC-------CCCeEEEChHHHHH-------HHHHHHHHHH
Q psy9709 154 LIGVIDEGTR--TVRFAIISALTQ---EEVVSHSMDISTISP-------QEGWAEQDPMEILQ-------AVQTTMDRAI 214 (500)
Q Consensus 154 ~~lgIDiGTt--s~k~~l~d~~~G---~vi~~~~~~~~~~~~-------~~g~~~~d~~~~~~-------~i~~~l~~~~ 214 (500)
+++|+=.||| ++-+++++.+ + +++...+.+|+.... .+. ..+++++.+ ...+++++++
T Consensus 2 ~~iGlMSGTSlDGiD~alv~~~-~~~~~~l~~~~~pyp~~lr~~l~~~~~~~--~~~~~~~~~l~~~lg~~~a~av~~~l 78 (364)
T PF03702_consen 2 LVIGLMSGTSLDGIDAALVEFD-GWRIELLAFHSFPYPSELRERLLALSRPA--ASSLDELCELDRELGELFADAVNQFL 78 (364)
T ss_dssp EEEEEEE-TT-SEEEEEEEEES-SSSEEEEEEEEEE--HHHHHHHHHCCSTT--CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCHHhhhheeEEEE-CCceEEeeeEeecCCHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999998 6778888875 4 666677777764311 111 111222211 2244555555
Q ss_pred HHHHhCCCCCCCeeEEEEcCCC
Q psy9709 215 EKLSAHGLSRDDIVTLGITNQR 236 (500)
Q Consensus 215 ~~~~~~~~~~~~I~~I~vs~~~ 236 (500)
+ +.++++++|.+||..+|.
T Consensus 79 ~---~~~i~~~~I~~IgsHGQT 97 (364)
T PF03702_consen 79 K---KNGISPSDIDLIGSHGQT 97 (364)
T ss_dssp H---HCT--GGGEEEEEE--EE
T ss_pred H---HcCCCcccccEEEeCCcc
Confidence 4 368888999999987663
No 322
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=24.45 E-value=1.2e+02 Score=28.91 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=53.1
Q ss_pred CceeeechhhhchhHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCCCeEEeccCCCCCCCCCCCCCcEEE----Ec-----
Q psy9709 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVM-TTGDVYFVPAFGGLYAPYWRKDARGVI----CG----- 471 (500)
Q Consensus 402 p~~~~~~g~~~~~G~~~~w~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~P~~~G~r~P~~~~~~~g~f----~G----- 471 (500)
|..+.-.|+++.||..+-=+..++....+|++|-+++..-. .+-+ +..-++.|.. |..+.+++.. ||
T Consensus 164 psqf~RvGGsslGGGtlwGLlsLlt~a~~ydqmld~aq~GDn~svD-mlVgdIYg~d--y~~~glks~~iAssFGkVf~~ 240 (342)
T COG5146 164 PSQFERVGGSSLGGGTLWGLLSLLTQATDYDQMLDMAQHGDNNSVD-MLVGDIYGDD--YEEPGLKSDLIASSFGKVFHH 240 (342)
T ss_pred cchhccccccccCcchHHHHHHHHcccccHHHHHHHHhcCCCccce-eeehhhccCc--cccCCCCchhhHHHHHHHHHh
Confidence 56775555566666666666667777788999988887644 3333 3456666644 2233333322 22
Q ss_pred CC--CC-CCHHHHHHHHHHHHHHHHH
Q psy9709 472 MT--QF-TTKGHIIRAALEAICFQTR 494 (500)
Q Consensus 472 l~--~~-~~~~~l~rAv~Egia~~~~ 494 (500)
.. ++ -++.++.++++-.|.-.+-
T Consensus 241 r~k~le~F~p~di~~sll~aisnnig 266 (342)
T COG5146 241 RDKPLEEFTPSDILASLLGAISNNIG 266 (342)
T ss_pred hcCchhhcCcHHHHHHHHHHHhcchh
Confidence 21 12 4677888888877655443
No 323
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=24.41 E-value=73 Score=32.03 Aligned_cols=20 Identities=40% Similarity=0.288 Sum_probs=16.8
Q ss_pred CEEEEEeccCCCceEEEEeC
Q psy9709 153 PLIGVIDEGTRTVRFAIISA 172 (500)
Q Consensus 153 ~~~lgIDiGTts~k~~l~d~ 172 (500)
...+.+|+|...+-++++..
T Consensus 150 ~~~lvvDiG~gtt~v~vi~~ 169 (335)
T PRK13929 150 VANVVVDIGGGTTEVAIISF 169 (335)
T ss_pred ceEEEEEeCCCeEEEEEEEe
Confidence 45688999999999999864
No 324
>KOG2708|consensus
Probab=24.35 E-value=3.2e+02 Score=25.87 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=47.3
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCH-HHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEc
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 104 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~-~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igis 104 (500)
.+|+.=....+-+.++. +|++++-.+..|- ..|..|+-..|. ..-...+...+++.+++ ++++.++|..|+.+
T Consensus 4 alG~EGSANKlGvGiv~--~~~iLaN~R~TYi-tPPG~GFlP~~TA~HHr~~il~Lv~~al~e---a~v~~~diD~icyT 77 (336)
T KOG2708|consen 4 ALGLEGSANKLGVGIVR--DGKILANPRHTYI-TPPGEGFLPRDTARHHRAWILGLVKQALEE---AGVTSDDIDCICYT 77 (336)
T ss_pred EEecccccccceeeEEe--cceeecCcccccc-CCCCCCCCcchhHHHHHHHHHHHHHHHHHH---cCCChhhCCEEEEc
Confidence 33444333334455554 5899987665542 335566655443 34455667778888777 99999999999887
Q ss_pred C
Q psy9709 105 N 105 (500)
Q Consensus 105 ~ 105 (500)
-
T Consensus 78 K 78 (336)
T KOG2708|consen 78 K 78 (336)
T ss_pred C
Confidence 4
No 325
>PRK13795 hypothetical protein; Provisional
Probab=24.02 E-value=50 Score=36.52 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=27.7
Q ss_pred hcccCCCCchhchHHHHHHHHhhChHHHHHhh
Q psy9709 281 KPICGLPVSPYFSALKLSWLIQNVSSVRRAIK 312 (500)
Q Consensus 281 ~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~ 312 (500)
|...|+.+.|...+..+..+++++||.|++..
T Consensus 408 y~riGC~~Cp~~~~~e~~~~~~~~Pe~~~~~~ 439 (636)
T PRK13795 408 FDRIGCWLCPSSSLAEFERLKELHPELYEKWE 439 (636)
T ss_pred CCCCCccCCCCCCHHHHHHHHHHCHHHHHHHH
Confidence 34578888888899999999999999999765
No 326
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=23.93 E-value=1e+02 Score=31.45 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=45.5
Q ss_pred EEEEEeccCC--CceEEEEeCCCC-----eEEEEeeeecccccCC------CCeEEEChHHHHH-------HHHHHHHHH
Q psy9709 154 LIGVIDEGTR--TVRFAIISALTQ-----EEVVSHSMDISTISPQ------EGWAEQDPMEILQ-------AVQTTMDRA 213 (500)
Q Consensus 154 ~~lgIDiGTt--s~k~~l~d~~~G-----~vi~~~~~~~~~~~~~------~g~~~~d~~~~~~-------~i~~~l~~~ 213 (500)
+++|+=.||| .+-+++++.+ | +++...+.+|+....+ ... .-+++++-+ ...++++++
T Consensus 3 ~~iGlMSGTSlDGiD~alv~~~-g~~~~~~~~~~~~~py~~~lr~~l~~~~~~~-~~~~~~l~~l~~~lg~~~a~av~~~ 80 (365)
T PRK09585 3 RYIGLMSGTSLDGVDAALVEID-GEGTKVELLASATVPYPDELRAALLALLQGG-ADELERLAELDTALGRLFAEAVNAL 80 (365)
T ss_pred eEEEeccccChhhhhEEEEEEe-CCCcceEEeeeeEeeCCHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888988 6677777764 4 2445566676643110 110 112233322 224455555
Q ss_pred HHHHHhCCCCCCCeeEEEEcCCC
Q psy9709 214 IEKLSAHGLSRDDIVTLGITNQR 236 (500)
Q Consensus 214 ~~~~~~~~~~~~~I~~I~vs~~~ 236 (500)
+++ +++++.+|.+||..+|.
T Consensus 81 ~~~---~~l~~~~id~IgsHGQT 100 (365)
T PRK09585 81 LAE---AGLSPEDIDAIGSHGQT 100 (365)
T ss_pred HHH---cCCCccCccEEEeCCcc
Confidence 543 68888999999988775
No 327
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=23.80 E-value=1.1e+02 Score=25.54 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=30.7
Q ss_pred EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709 196 EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 235 (500)
Q Consensus 196 ~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~ 235 (500)
+.+.++++++..+.+.+++++ .++++++|.+|-||..
T Consensus 12 ~nt~e~I~~at~eLl~~i~~~---N~l~~edivSv~FT~T 48 (117)
T cd02185 12 ENTAEEILEATRELLEEIIER---NNIKPEDIISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence 346788999999999999876 5788999999988765
No 328
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=23.44 E-value=5.2e+02 Score=22.89 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=32.9
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHH
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~ 87 (500)
|+|||=|+..+=.+|++. +++.+. ...+..+.... ++..+=+..+.+.+.+++++
T Consensus 1 ILGIDPGl~~tG~gvi~~-~~~~~~--~v~~G~I~t~~----~~~~~RL~~I~~~l~~~i~~ 55 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQ-VGRQLS--YLGSGCIRTKV----DDLPSRLKLIYAGVTEIITQ 55 (156)
T ss_pred CEeECcccccccEEEEEe-cCCeEE--EEEeeEEECCC----CCHHHHHHHHHHHHHHHHHH
Confidence 467999999999999997 555432 12222222211 13344445666677777765
No 329
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=23.24 E-value=2.1e+02 Score=27.62 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=41.2
Q ss_pred cEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103 (500)
Q Consensus 24 ~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Igi 103 (500)
.+++ ||+|.+.+-++++. +++|.+.-...+. ..+++.+++-+.+..+ ..++.++| +
T Consensus 168 ~~~~-vniGN~HTlaa~v~--~~rI~GvfEHHT~---------~l~~~kL~~~l~~l~~--------G~Lt~eEV----f 223 (254)
T PF08735_consen 168 GIIV-VNIGNGHTLAALVK--DGRIYGVFEHHTG---------MLTPEKLEEYLERLRD--------GTLTNEEV----F 223 (254)
T ss_pred CeEE-EEeCCccEEEEEEe--CCEEEEEEecccC---------CCCHHHHHHHHHHHHc--------CCCChHHh----h
Confidence 4444 99999999999995 6889886554443 3467777655544433 33344443 3
Q ss_pred cCCcceeEE
Q psy9709 104 TNQRETTVV 112 (500)
Q Consensus 104 s~~~~~~v~ 112 (500)
.-.+|+...
T Consensus 224 ~dgGHGa~~ 232 (254)
T PF08735_consen 224 DDGGHGAYV 232 (254)
T ss_pred cCCCCceee
Confidence 444666555
No 330
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=22.76 E-value=1.2e+02 Score=25.36 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=30.6
Q ss_pred EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEcCC
Q psy9709 196 EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 235 (500)
Q Consensus 196 ~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~vs~~ 235 (500)
+.+.++++++..+.+.+++++ .++++++|.+|-||..
T Consensus 12 ~nt~e~I~~at~eLl~~ii~~---N~l~~edivSv~FT~T 48 (117)
T TIGR01796 12 RNEAEEIGEAVAELLTELMER---NELTPEDLISVIFTVT 48 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEec
Confidence 356788999999999999876 5788999999988765
No 331
>PRK13328 pantothenate kinase; Reviewed
Probab=22.62 E-value=84 Score=30.33 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=18.7
Q ss_pred EEEEeccCCCceEEEEeCCCCeEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEV 178 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi 178 (500)
+|-||+|.|.+|..++|.. ++++
T Consensus 3 ~LliDiGNTriKwa~~~~~-~~~~ 25 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADAG-RPWV 25 (255)
T ss_pred EEEEEeCccceeEEEEcCC-Ccee
Confidence 5779999999999999953 4554
No 332
>PRK13329 pantothenate kinase; Reviewed
Probab=22.59 E-value=63 Score=31.09 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=15.3
Q ss_pred EEEEEecCCCcceEEEEe
Q psy9709 25 LIGVIDEGTRTVRFAIIS 42 (500)
Q Consensus 25 ~i~giDiGtt~~k~~v~d 42 (500)
+++ ||+|-|.+|.+++|
T Consensus 3 ~Ll-iD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLA-IDVGNTRLKWGLYD 19 (249)
T ss_pred EEE-EEcCcchheeeEec
Confidence 455 99999999999999
No 333
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=22.54 E-value=2.1e+02 Score=23.74 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=29.8
Q ss_pred ceEEEEeCCCCcEEEEEEeeeeeec------CCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy9709 36 VRFAIISALTQEEVVSHSMDISTIS------PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV 99 (500)
Q Consensus 36 ~k~~v~d~~~g~~l~~~~~~~~~~~------~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~ 99 (500)
+-++++|. +|+++-..+....... +..|..+.+ +... ..+++++.++ .|++..++.
T Consensus 3 ~~v~i~~~-~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~g-E~~~---~aa~REl~EE---tGl~~~~l~ 64 (126)
T cd04697 3 TYIFVFNS-EGKLCVHKRTLTKDWCPGYWDIAFGGVVQAG-ESYL---QNAQRELEEE---LGIDGVQLT 64 (126)
T ss_pred EEEEEEcC-CCeEEEEECCCCCCCCCCcccCcCCcccCCC-CCHH---HHHHHHHHHH---HCCCccccE
Confidence 45678998 8998875543322111 122444432 2222 3466777776 666554333
No 334
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=22.53 E-value=1.4e+02 Score=30.45 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=43.9
Q ss_pred EEEEEecCCC--cceEEEEeCCCC---cEEEEEEeeeeeec-------CCCCccccCHH-------HHHHHHHHHHHHHH
Q psy9709 25 LIGVIDEGTR--TVRFAIISALTQ---EEVVSHSMDISTIS-------PQEGWAEQDPM-------EILQAVQTTMDRAI 85 (500)
Q Consensus 25 ~i~giDiGtt--~~k~~v~d~~~g---~~l~~~~~~~~~~~-------~~~g~~e~d~~-------~~~~~~~~~i~~~~ 85 (500)
+++|+=-||+ ++=+++++- ++ +++...+.+|+... -.+. ..+++ ++=+.+.+++++++
T Consensus 2 ~~iGlMSGTSlDGiD~alv~~-~~~~~~~l~~~~~pyp~~lr~~l~~~~~~~--~~~~~~~~~l~~~lg~~~a~av~~~l 78 (364)
T PF03702_consen 2 LVIGLMSGTSLDGIDAALVEF-DGWRIELLAFHSFPYPSELRERLLALSRPA--ASSLDELCELDRELGELFADAVNQFL 78 (364)
T ss_dssp EEEEEEE-TT-SEEEEEEEEE-SSSSEEEEEEEEEE--HHHHHHHHHCCSTT--CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCHHhhhheeEEE-ECCceEEeeeEeecCCHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888 688888887 54 55666666775221 0111 11121 23445666777777
Q ss_pred HHHHhCCCCCCCeeEEEEcCCc
Q psy9709 86 EKLSAHGLSRDDIVTLGITNQR 107 (500)
Q Consensus 86 ~~~~~~~~~~~~i~~Igis~~~ 107 (500)
++ .++++++|.+||.-+|.
T Consensus 79 ~~---~~i~~~~I~~IgsHGQT 97 (364)
T PF03702_consen 79 KK---NGISPSDIDLIGSHGQT 97 (364)
T ss_dssp HH---CT--GGGEEEEEE--EE
T ss_pred HH---cCCCcccccEEEeCCcc
Confidence 76 89999999999877654
No 335
>smart00265 BH4 BH4 Bcl-2 homology region 4.
Probab=22.43 E-value=52 Score=19.88 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=9.4
Q ss_pred hHHHHHhhcCC
Q psy9709 322 DTWLVWNLTGR 332 (500)
Q Consensus 322 ~dyi~~~LTg~ 332 (500)
-|||.|||+.+
T Consensus 10 ~~yv~yKLsQr 20 (27)
T smart00265 10 VDYVTYKLSQN 20 (27)
T ss_pred HHHHHHHHhhc
Confidence 68999999965
No 336
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=21.94 E-value=1e+02 Score=26.58 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=17.6
Q ss_pred EEEEEeccCCCceEEEEeCC
Q psy9709 154 LIGVIDEGTRTVRFAIISAL 173 (500)
Q Consensus 154 ~~lgIDiGTts~k~~l~d~~ 173 (500)
-+||||+|+..+=+++-|..
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 37899999999999999964
No 337
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=21.52 E-value=91 Score=30.68 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=15.7
Q ss_pred EEEEecCCCcceEEEEeCCCCcEEE
Q psy9709 26 IGVIDEGTRTVRFAIISALTQEEVV 50 (500)
Q Consensus 26 i~giDiGtt~~k~~v~d~~~g~~l~ 50 (500)
++.+|+|+|++.++++. +|+...
T Consensus 79 ~i~vDmGGTTtDi~~i~--~G~p~~ 101 (290)
T PF01968_consen 79 AIVVDMGGTTTDIALIK--DGRPEI 101 (290)
T ss_dssp EEEEEE-SS-EEEEEEE--TTEE--
T ss_pred EEEEeCCCCEEEEEEEE--CCeeec
Confidence 34499999999999997 587653
No 338
>PF12864 DUF3822: Protein of unknown function (DUF3822); InterPro: IPR024213 This is a family of uncharacterised bacterial proteins. However, structural-similarity searches indicate the family takes on an actin-like ATPase fold.; PDB: 3HRG_A.
Probab=21.22 E-value=3e+02 Score=26.30 Aligned_cols=80 Identities=16% Similarity=0.095 Sum_probs=40.1
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCcEEEEEEeeeeeecCCCCccccCHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 102 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~Ig 102 (500)
+.+.+.|-+|..+...+++|....+++........ .+.++..+.+.+.+++++- .- ... +-+=+-|.
T Consensus 17 ~~~~LsI~i~~~glsf~i~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~-~~---L~~-~~~~v~v~ 83 (253)
T PF12864_consen 17 EQYKLSIRISLDGLSFCIYDPESKEILALESYSFD--------TELTPISLLANLKEAFKEH-EL---LQQ-PYKEVRVL 83 (253)
T ss_dssp GGSEEEEEE-TT-EEEEEEETTTTEEEEEEEE--------------TTS-HHHHHHHHHHH--GG---GGS---SEEEEE
T ss_pred cCceEEEEEcCCcEEEEEEcCCCCcEEEEEEEEec--------ccCChhHHHHHHHHHHhhh-HH---hhC-CCcEEEEE
Confidence 34566699999999999999833344443333322 1125566777777777643 11 111 22334456
Q ss_pred EcCCcceeEEeeC
Q psy9709 103 ITNQRETTVVWDL 115 (500)
Q Consensus 103 is~~~~~~v~~d~ 115 (500)
+.+...++||-.-
T Consensus 84 ~~~~~~tlVP~~l 96 (253)
T PF12864_consen 84 HDSPLFTLVPNEL 96 (253)
T ss_dssp E--S-EEEEEGGG
T ss_pred EcCCceEEeChHH
Confidence 7777778887644
No 339
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=21.14 E-value=1.3e+02 Score=29.48 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCcceEEEEeCCCCcEEEEEE
Q psy9709 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHS 53 (500)
Q Consensus 23 ~~~i~giDiGtt~~k~~v~d~~~g~~l~~~~ 53 (500)
+++.+ +|+|+-|+-+++++. +|++.+.+-
T Consensus 134 ~PlaI-lDmG~GSTDAsii~~-~g~v~~iHl 162 (332)
T PF08841_consen 134 KPLAI-LDMGGGSTDASIINR-DGEVTAIHL 162 (332)
T ss_dssp SSEEE-EEE-SSEEEEEEE-T-TS-EEEEEE
T ss_pred CCeEE-EecCCCcccHHHhCC-CCcEEEEEe
Confidence 35666 999999999999998 898887543
No 340
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=20.78 E-value=46 Score=25.55 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.7
Q ss_pred HHHHhhcCCCCCCCCCcccCCccc
Q psy9709 357 PLLCKYFAVPPTILPEIRSSSEIY 380 (500)
Q Consensus 357 ~~ll~~~gl~~~~lP~i~~~~~~~ 380 (500)
.++|+.++|.+++||.|..+.-++
T Consensus 27 ~~vLk~l~i~~~qLPkI~~~DPva 50 (80)
T COG2012 27 KEVLKELGIEPEQLPKIKASDPVA 50 (80)
T ss_pred HHHHHHhCCCHHHCCcccccChhH
Confidence 369999999999999998765444
No 341
>KOG2707|consensus
Probab=20.10 E-value=1.6e+02 Score=29.66 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=44.1
Q ss_pred EEEEeccCCCceEEEEeCCCCeEEEEeeee-cccccCCCCeE-EEChHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy9709 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232 (500)
Q Consensus 155 ~lgIDiGTts~k~~l~d~~~G~vi~~~~~~-~~~~~~~~g~~-~~d~~~~~~~i~~~l~~~~~~~~~~~~~~~~I~~I~v 232 (500)
+|||...---+-++++|+. +++++..... ........|.. .+-.+.-.+.+...+++++.. ++.++.++.+|+|
T Consensus 34 VLgIETSCDDTavaVVd~~-~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~a---a~~~p~dldaIAV 109 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDEF-SHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDA---AGLSPKDLDAIAV 109 (405)
T ss_pred eeeEecccCcceeeeeccc-ccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH---cCCCcccceeEEE
Confidence 7888854445578888974 8888653211 11111223322 222223334556666666654 5788999999998
Q ss_pred cC
Q psy9709 233 TN 234 (500)
Q Consensus 233 s~ 234 (500)
+-
T Consensus 110 T~ 111 (405)
T KOG2707|consen 110 TR 111 (405)
T ss_pred ec
Confidence 74
Done!