RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9709
(500 letters)
>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan glycerol kinases (GKs), coded by X
chromosome-linked GK genes, and glycerol kinase
(GK)-like proteins, coded by autosomal testis-specific
GK-like genes (GK-like genes, GK1 and GK3). Sequence
comparison shows that metazoan GKs and GK-like proteins
in this family are closely related to the bacterial GKs,
which catalyze the Mg-ATP dependent phosphorylation of
glycerol to yield glycerol 3-phosphate (G3P). The
metazoan GKs do have GK enzymatic activity. However, the
GK-like metazoan proteins do not exhibit GK activity and
their biological functions are not yet clear. Some of
them lack important functional residues involved in the
binding of ADP and Mg2+, which may result in the loss of
GK catalytic function. Others that have conserved
catalytic residues have lost their GK activity as well;
the reason remains unclear. It has been suggested the
conserved catalytic residues might facilitate them
performing a distinct function. GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 504
Score = 604 bits (1560), Expect = 0.0
Identities = 223/400 (55%), Positives = 275/400 (68%), Gaps = 54/400 (13%)
Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
PL+G ID+GT + RF + +A T E + SH ++I I P+EGW EQDP EIL +V +++
Sbjct: 1 PLVGAIDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIEK 60
Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
+KL + DI +GITNQRETTVVWD TGEPLYNAIVW D R + VD++LAK
Sbjct: 61 TCKKLKELNIDVSDIKAIGITNQRETTVVWDKYTGEPLYNAIVWLDIRTQSTVDKLLAKI 120
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
PD++K+YLK ICGLP+S YFSA+KL WL+ NV VR+A++E RCLFGTVD+WL+WNLTG
Sbjct: 121 PDKNKNYLKSICGLPISTYFSAVKLRWLLDNVPEVRKAVEEKRCLFGTVDSWLIWNLTGG 180
Query: 333 T---CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
H+TDVTNASRTMLMNI++L+WDP LCK+F +P ILPEIRSSSEIYG
Sbjct: 181 PNGGVHITDVTNASRTMLMNIETLEWDPELCKFFGIPMEILPEIRSSSEIYGYIKEGPLE 240
Query: 383 --------------------------------------------VHSNNGLVTTVAYQFG 398
V S +GL+TTVAY+ G
Sbjct: 241 GIPISGILGDQQAALVGQMCFKKGQAKNTYGTGCFLLYNTGTKPVFSTHGLLTTVAYKLG 300
Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
PD IYALEGS+A+AGAA++WLRDNL ++ + E LA +V T+GDVYFVPAF GLYA
Sbjct: 301 PDKPTIYALEGSVAIAGAAIRWLRDNLGIIKTSSDIEKLASEVGTSGDVYFVPAFSGLYA 360
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
PYWRKDARG+ICG+TQFTTK HI RAALEA+CFQTR+ILE
Sbjct: 361 PYWRKDARGIICGLTQFTTKNHIARAALEAVCFQTREILE 400
Score = 164 bits (417), Expect = 5e-45
Identities = 54/102 (52%), Positives = 70/102 (68%)
Query: 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
PL+G ID+GT + RF + +A T E + SH ++I I P+EGW EQDP EIL +V +++
Sbjct: 1 PLVGAIDQGTSSTRFLVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIEK 60
Query: 84 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+KL + DI +GITNQRETTVVWD TGEPLYNAI
Sbjct: 61 TCKKLKELNIDVSDIKAIGITNQRETTVVWDKYTGEPLYNAI 102
>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase. This model describes
glycerol kinase, a member of the FGGY family of
carbohydrate kinases [Energy metabolism, Other].
Length = 493
Score = 511 bits (1319), Expect = e-179
Identities = 191/398 (47%), Positives = 236/398 (59%), Gaps = 60/398 (15%)
Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
P I ID+GT + R + V H + + I P+ GW E DPMEI ++V + +
Sbjct: 1 PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAE 59
Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
A+ K G+ DDI +GITNQRETTVVWD TG+PLYNAIVW D R +I +++ A+
Sbjct: 60 ALAKA---GIKPDDIAAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEG 116
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
++++ GLP+ PYFSA KL WL+ NV VR A + LFGT+DTWL+WNLTG
Sbjct: 117 YG---EFIREKTGLPLDPYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGG 173
Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK---------- 382
HVTDVTNASRTML NI +L WD L + F +P ILPE+RSSSE+YG
Sbjct: 174 KVHVTDVTNASRTMLFNIHTLDWDDELLELFGIPREILPEVRSSSEVYGYTDPGLLGAEI 233
Query: 383 ------------------------------------------VHSNNGLVTTVAYQFGPD 400
V S +GL+TTVAYQ G
Sbjct: 234 PITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVAYQLGGK 293
Query: 401 ATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPY 460
P+YALEGS+ VAGAAV+WLRDNL L+ + E+E+LA V G VYFVPAF GL APY
Sbjct: 294 K-PVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPY 352
Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
W DARG I G+T+ TTK HI RAALEAI FQTRD+LE
Sbjct: 353 WDPDARGAIFGLTRGTTKAHIARAALEAIAFQTRDVLE 390
Score = 128 bits (324), Expect = 3e-32
Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 24 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
P I ID+GT + R + V H + + I P+ GW E DPMEI ++V + +
Sbjct: 1 PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAE 59
Query: 84 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
A+ K G+ DDI +GITNQRETTVVWD TG+PLYNAI
Sbjct: 60 ALAKA---GIKPDDIAAIGITNQRETTVVWDKATGKPLYNAI 98
>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family
of carbohydrate kinases. This subfamily includes
glycerol kinases (GK; EC 2.7.1.30) and glycerol
kinase-like proteins from all three kingdoms of living
organisms. Glycerol is an important intermediate of
energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Human GK deficiency, called
hyperglycerolemia, is an X-linked recessive trait
associated with psychomotor retardation, osteoporosis,
spasticity, esotropia, and bone fractures. Under
different conditions, GKs from different species may
exist in different oligomeric states. The monomer of GKs
is composed of two large domains separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain. The high affinity ATP binding site of GKs is
created only by a substrate-induced conformational
change. Based on sequence similarity, some GK-like
proteins from metazoa, which have lost their GK
enzymatic activity, are also included in this CD.
Members in this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 484
Score = 497 bits (1282), Expect = e-173
Identities = 201/398 (50%), Positives = 246/398 (61%), Gaps = 61/398 (15%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
I ID+GT + RF II E V SH ++ I PQ GW E DP EI V ++ A
Sbjct: 1 YILAIDQGTTSTRF-IIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEA 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
++KL +S + I +GITNQRETTV WD TG+PLYNAIVW DTR IV+++ A
Sbjct: 60 LKKL---RISPEQIKAIGITNQRETTVAWDKETGKPLYNAIVWQDTRTSEIVEELKA--- 113
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
D + DY + GLP+SPYFSALKL WL++NV VR AI+E LFGT+DTWL+WNLTG
Sbjct: 114 DGNADYFREKTGLPISPYFSALKLRWLLENVPEVREAIEEGTLLFGTIDTWLIWNLTGGK 173
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYG------------ 381
HVTDVTNASRTMLMN+ +LQWD L + F +P LPEIRSSSE+YG
Sbjct: 174 VHVTDVTNASRTMLMNLHTLQWDEELLELFGIPSECLPEIRSSSEVYGYTNEGGLLGEGI 233
Query: 382 -----------------------------------------KVHSNNGLVTTVAYQFGPD 400
V S +GL+TT+AY+ GP
Sbjct: 234 PIAGCLGDQQAALFGQGCFEAGDAKCTYGTGCFLLMNTGEKPVISEHGLLTTIAYKLGP- 292
Query: 401 ATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPY 460
P+YALEGSIAVAG+AV+WLRDNL ++ + E E LA V TG VYFVPAF GL+APY
Sbjct: 293 GKPVYALEGSIAVAGSAVQWLRDNLKIISSASEVEELAASVEDTGGVYFVPAFSGLFAPY 352
Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
W DARG I G+T+ TT+ HI+RAALEAI FQTRD+L+
Sbjct: 353 WDPDARGTILGLTRGTTRAHIVRAALEAIAFQTRDVLD 390
Score = 126 bits (320), Expect = 1e-31
Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
I ID+GT + RF II E V SH ++ I PQ GW E DP EI V ++ A
Sbjct: 1 YILAIDQGTTSTRF-IIFDRDGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEA 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
++KL +S + I +GITNQRETTV WD TG+PLYNAI
Sbjct: 60 LKKL---RISPEQIKAIGITNQRETTVAWDKETGKPLYNAI 97
>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional.
Length = 504
Score = 482 bits (1244), Expect = e-167
Identities = 193/401 (48%), Positives = 238/401 (59%), Gaps = 58/401 (14%)
Query: 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 211
+ IG ID+GT + RF II V SH + I+P GW E DP EIL+ V M+
Sbjct: 1 MKYIGSIDQGTTSTRF-IIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMN 59
Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
AI+KL G S I +GITNQRET V WD TG+PLYNAIVW DTR +IV+++ K
Sbjct: 60 EAIKKLREKGPSFK-IKAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKK 118
Query: 272 FPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG 331
+ ++ + I GLP+S YFSA K+ W+++NV +V+ A+KE LFGT+DTWL+WNLTG
Sbjct: 119 YGG--SNFFQKITGLPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTG 176
Query: 332 RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI------------ 379
HVTDVTNASRT LMNI +L+WD L F +P LPEI+SSSE
Sbjct: 177 GKSHVTDVTNASRTFLMNIKTLKWDEELLNKFGIPKETLPEIKSSSENFGTISGEAVPLL 236
Query: 380 ------------------------------YG------------KVHSNNGLVTTVAYQF 397
YG V S +GL+TTV YQ
Sbjct: 237 EGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQL 296
Query: 398 GPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLY 457
GP+ +YALEGSIAVAGA V+WLRDN+ L+ + E E LA V TG V FVPAF GL+
Sbjct: 297 GPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLF 356
Query: 458 APYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
APYWR DARG I GMT TT+ HI+RAALEAI QT D++E
Sbjct: 357 APYWRPDARGTIVGMTLKTTRAHIVRAALEAIALQTNDVIE 397
Score = 114 bits (287), Expect = 3e-27
Identities = 51/103 (49%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 82
+ IG ID+GT + RF II V SH + I+P GW E DP EIL+ V M+
Sbjct: 1 MKYIGSIDQGTTSTRF-IIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMN 59
Query: 83 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
AI+KL G S I +GITNQRET V WD TG+PLYNAI
Sbjct: 60 EAIKKLREKGPSFK-IKAIGITNQRETVVAWDKVTGKPLYNAI 101
>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase.
Length = 512
Score = 447 bits (1151), Expect = e-153
Identities = 186/400 (46%), Positives = 241/400 (60%), Gaps = 57/400 (14%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+G ID+GT + RF II V SH ++ + I PQ GW E DPMEIL++V T + +A
Sbjct: 1 FVGAIDQGTTSTRF-IIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKA 59
Query: 214 IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
+EK +A G + D + +GITNQRETTV W +TG PLYNAIVW D+R +I ++ +
Sbjct: 60 LEKAAAKGHNVDSGLKAIGITNQRETTVAWSKSTGRPLYNAIVWMDSRTSSICRRLEKEL 119
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG- 331
K CGLP+S YFSA KL WL++NV +V+ A+K LFGT+D+WL+WNLTG
Sbjct: 120 SGGRKH-FVETCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGG 178
Query: 332 --RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------- 382
HVTDVTNASRTMLMN+ +L WD + +P ILP+I S+SE+ G
Sbjct: 179 ASGGVHVTDVTNASRTMLMNLKTLDWDKPTLEALGIPAEILPKIVSNSEVIGTIAKGWPL 238
Query: 383 --------------------------------------------VHSNNGLVTTVAYQFG 398
V S +GL+TTVAY+ G
Sbjct: 239 AGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKHGLLTTVAYKLG 298
Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
PDA YALEGS+A+AGAAV+WLRDNL ++ + E E+LA V TG VYFVPAF GL+A
Sbjct: 299 PDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFA 358
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
P WR DARGV G+T+FT K HI RA LE++CFQ +D+L+
Sbjct: 359 PRWRDDARGVCVGITRFTNKAHIARAVLESMCFQVKDVLD 398
Score = 112 bits (282), Expect = 1e-26
Identities = 51/102 (50%), Positives = 67/102 (65%), Gaps = 2/102 (1%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+G ID+GT + RF II V SH ++ + I PQ GW E DPMEIL++V T + +A
Sbjct: 1 FVGAIDQGTTSTRF-IIYDRDARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKA 59
Query: 85 IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAI 125
+EK +A G + D + +GITNQRETTV W +TG PLYNAI
Sbjct: 60 LEKAAAKGHNVDSGLKAIGITNQRETTVAWSKSTGRPLYNAI 101
>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional.
Length = 498
Score = 445 bits (1146), Expect = e-153
Identities = 171/397 (43%), Positives = 223/397 (56%), Gaps = 62/397 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I +D+GT + R AII V + + I PQ GW E DP EI + + + A
Sbjct: 7 ILALDQGTTSSR-AIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEA- 64
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
L+ G+S D I +GITNQRETTVVWD TG P+YNAIVW D R +I +++ D
Sbjct: 65 --LAKAGISPDQIAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKR---D 119
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+DY++ GL + PYFS K+ W++ NV R ++ LFGT+DTWLVW LTG
Sbjct: 120 GYEDYIREKTGLVIDPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGGKV 179
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
HVTD TNASRTML NI +L WD L + +P ++LPE+R SSE+YGK
Sbjct: 180 HVTDYTNASRTMLFNIHTLDWDDELLELLDIPRSMLPEVRPSSEVYGKTNPYGFFGGEVP 239
Query: 383 -----------------------------------------VHSNNGLVTTVAYQFGPDA 401
V S NGL+TT+A+ D
Sbjct: 240 IAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIAWGI--DG 297
Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
+YALEGSI VAG+A++WLRD L ++ + ++E+LA KV VY VPAF GL APYW
Sbjct: 298 KVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYW 357
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
DARG I G+T+ TTK HIIRA LE+I +QTRD+L+
Sbjct: 358 DSDARGAIFGLTRGTTKEHIIRATLESIAYQTRDVLD 394
Score = 113 bits (285), Expect = 6e-27
Identities = 45/100 (45%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I +D+GT + R AII V + + I PQ GW E DP EI + + + A
Sbjct: 7 ILALDQGTTSSR-AIIFDHDGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEA- 64
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
L+ G+S D I +GITNQRETTVVWD TG P+YNAI
Sbjct: 65 --LAKAGISPDQIAAIGITNQRETTVVWDKETGRPIYNAI 102
>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup is composed of mostly bacterial
and archaeal glycerol kinases (GK), including the well
characterized proteins from Escherichia coli (EcGK),
Thermococcus kodakaraensis (TkGK), and Enterococcus
casseliflavus (EnGK). GKs contain two large domains
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The high affinity ATP binding
site of EcGK is created only by a substrate-induced
conformational change, which is initiated by
protein-protein interactions through complex formation
with enzyme IIAGlc (also known as IIIGlc), the
glucose-specific phosphocarrier protein of the
phosphotransferase system (PTS). EcGK exists in a
dimer-tetramer equilibrium. IIAGlc binds to both EcGK
dimer and tetramer, and inhibits the uptake and
subsequent metabolism of glycerol and maltose. Another
well-known allosteric regulator of EcGK is fructose
1,6-bisphosphate (FBP), which binds to the EcGK tetramer
and plays an essential role in the stabilization of the
inactive tetrameric form. EcGK requires Mg2+ for its
enzymatic activity. Members in this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 486
Score = 443 bits (1142), Expect = e-152
Identities = 168/400 (42%), Positives = 222/400 (55%), Gaps = 67/400 (16%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
I ID+GT + R AI+ V + + I P+ GW E DP EI ++ A
Sbjct: 1 YILAIDQGTTSSR-AILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREA 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
+ K G+ DI +GITNQRETTVVWD TG+P+YNAIVW D R +I +++
Sbjct: 60 LAK---AGIRASDIAAIGITNQRETTVVWDRETGKPVYNAIVWQDRRTADICEEL----- 111
Query: 274 DQDKDYLKPIC---GLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLT 330
+ + + + I GL + PYFSA K+ W++ NV R + FGT+D+WL+W LT
Sbjct: 112 -KAEGHEEMIREKTGLVLDPYFSATKIRWILDNVPGARERAERGELAFGTIDSWLIWKLT 170
Query: 331 GRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK-------- 382
G H TDVTNASRTML NI +L+WD L + F +P ++LPE++ SSE++G
Sbjct: 171 GGKVHATDVTNASRTMLFNIHTLEWDDELLELFGIPASMLPEVKPSSEVFGYTDPDLLGA 230
Query: 383 --------------------------------------------VHSNNGLVTTVAYQFG 398
V S NGL+TT+A+Q
Sbjct: 231 EIPIAGIAGDQQAALFGQACFEPGMAKNTYGTGCFMLMNTGEKPVRSKNGLLTTIAWQ-- 288
Query: 399 PDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYA 458
YALEGSI +AGAAV+WLRD L L+++ ETE+LA V G VYFVPAF GL A
Sbjct: 289 LGGKVTYALEGSIFIAGAAVQWLRDGLGLIESAAETEALARSVPDNGGVYFVPAFTGLGA 348
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
PYW DARG I G+T+ TT+ HI RAALE+I +QTRD+LE
Sbjct: 349 PYWDPDARGAIFGLTRGTTRAHIARAALESIAYQTRDLLE 388
Score = 112 bits (283), Expect = 1e-26
Identities = 43/101 (42%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
I ID+GT + R AI+ V + + I P+ GW E DP EI ++ A
Sbjct: 1 YILAIDQGTTSSR-AILFDHDGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREA 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ K G+ DI +GITNQRETTVVWD TG+P+YNAI
Sbjct: 60 LAK---AGIRASDIAAIGITNQRETTVVWDRETGKPVYNAI 97
>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and
related proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of fungal glycerol kinases (GK), including
Saccharomyces cerevisiae Gut1p/YHL032Cp, which
phosphorylates glycerol to glycerol-3-phosphate in the
cytosol. Glycerol utilization has been considered as the
sole source of carbon and energy in S. cerevisiae, and
is mediated by glycerol kinase and glycerol 3-phosphate
dehydrogenase, which is encoded by the GUT2 gene.
Members in this family show high similarity to their
prokaryotic and eukaryotic homologs. GKs belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 496
Score = 439 bits (1132), Expect = e-151
Identities = 191/402 (47%), Positives = 245/402 (60%), Gaps = 57/402 (14%)
Query: 152 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 211
PL+G ID+GT + RF + + Q V SH ++ S I P GW E DP EI+ +V +
Sbjct: 1 TPLVGSIDQGTTSTRFILFNRDGQP-VASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIA 59
Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
A++ L G S+ D+ +GITNQRETTVVWD TG+PLYNAIVW+DTR + V ++ +K
Sbjct: 60 SALKSLETSGFSKYDVKVIGITNQRETTVVWDRETGKPLYNAIVWNDTRTTSTVRELESK 119
Query: 272 FPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG 331
+ L+ ICGLP+S YFS++KL W++ NV V++A + FGTVD+WL++NLTG
Sbjct: 120 LKKG-AEALREICGLPLSTYFSSVKLRWMLDNVPEVKKAYDDGDLAFGTVDSWLIYNLTG 178
Query: 332 RTC---HVTDVTNASRTMLMNIDSLQWDPLLCKYFAV-PPTILPEIRSSSEIYGK----- 382
HVTDVTNASRTM MN+ +L++D L +F + ILPEI SSSE+YG
Sbjct: 179 GPKTKVHVTDVTNASRTMFMNLATLKYDQKLLDFFGIDKKIILPEIVSSSEVYGNIAYGP 238
Query: 383 ----------------------------------------------VHSNNGLVTTVAYQ 396
V S +GL+TTVAYQ
Sbjct: 239 LEGVPIAGCLGDQSAALVGQKAFTPGEAKNTYGTGCFLLYNTGEKPVISKHGLLTTVAYQ 298
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
FGP A P+YALEGSIAVAG+AVKWLRDNL L+ + LA +V +G V FV AF GL
Sbjct: 299 FGPGAKPVYALEGSIAVAGSAVKWLRDNLGLISKAEDIGELASQVPDSGGVVFVTAFSGL 358
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+APYW DARG I G+TQ+TTK HI RAALEA+CFQTR IL+
Sbjct: 359 FAPYWDDDARGTIFGITQYTTKSHIARAALEAVCFQTRAILD 400
Score = 121 bits (306), Expect = 7e-30
Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 1/103 (0%)
Query: 23 VPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD 82
PL+G ID+GT + RF + + Q V SH ++ S I P GW E DP EI+ +V +
Sbjct: 1 TPLVGSIDQGTTSTRFILFNRDGQP-VASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIA 59
Query: 83 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
A++ L G S+ D+ +GITNQRETTVVWD TG+PLYNAI
Sbjct: 60 SALKSLETSGFSKYDVKVIGITNQRETTVVWDRETGKPLYNAI 102
>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion].
Length = 499
Score = 439 bits (1132), Expect = e-151
Identities = 172/402 (42%), Positives = 224/402 (55%), Gaps = 61/402 (15%)
Query: 149 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQT 208
I ID+GT + R + V + + I PQ GW E DP+EI +V++
Sbjct: 1 MLADKYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRS 59
Query: 209 TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQV 268
+ A+ K G+ +I +GITNQRETTVVWD TG+P+YNAIVW D R +I +++
Sbjct: 60 VLKEALAKA---GIKPGEIAAIGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEEL 116
Query: 269 LAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWN 328
A D ++ ++ GL + PYFSA K+ W++ NV R ++ LFGT+DTWL+W
Sbjct: 117 KA---DGYEERIREKTGLVLDPYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWK 173
Query: 329 LTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH---- 384
LTG HVTD +NASRTML NI SL+WD L + +P ++LPE+R SSEIYG
Sbjct: 174 LTGGKVHVTDYSNASRTMLFNIHSLEWDDELLELLGIPRSMLPEVRPSSEIYGVTGIGFL 233
Query: 385 ------------------------------------------------SNNGLVTTVAYQ 396
S NGL+TT+A+
Sbjct: 234 GAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWG 293
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
D YALEGSI VAGAAV+WLRD L L+D+ ++E LAE V G VYFVPAF GL
Sbjct: 294 L--DGKVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGL 351
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
APYW DARG I G+T+ TTK HI RA LE+I +QTRD+LE
Sbjct: 352 GAPYWDSDARGAIFGLTRGTTKAHIARATLESIAYQTRDVLE 393
Score = 113 bits (284), Expect = 7e-27
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 20 QTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQT 79
I ID+GT + R + V + + I PQ GW E DP+EI +V++
Sbjct: 1 MLADKYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRS 59
Query: 80 TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ A+ K G+ +I +GITNQRETTVVWD TG+P+YNAI
Sbjct: 60 VLKEALAKA---GIKPGEIAAIGITNQRETTVVWDKETGKPIYNAI 102
>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp. glycerol kinase-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a small group of
bacterial glycerol kinases (GK) with similarity to
Cellulomonas sp. glycerol kinase (CsGK). CsGK might
exist as a dimer. Its monomer is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. The regulation
of the catalytic activity of this group has not yet been
examined. Members in this subgroup belong to the FGGY
family of carbohydrate kinases.
Length = 495
Score = 417 bits (1075), Expect = e-142
Identities = 176/399 (44%), Positives = 227/399 (56%), Gaps = 63/399 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
+ ID+GT + R + V + I P+ GW E DP EI + + + A
Sbjct: 2 VAAIDQGTTSTRCIVFDH-HGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGA- 59
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
L+ GL+ +DI +GITNQRETTVVWD TG P+YNAIVW DTR D I ++ A D
Sbjct: 60 --LAKAGLTPEDIAAVGITNQRETTVVWDRATGRPVYNAIVWQDTRTDEICRELAA---D 114
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT- 333
+ + + GLP++ YFS K+ W++ NV R ++ LFGT+DTWL+WNLTG
Sbjct: 115 EGQQRFRARTGLPLATYFSGPKIRWILDNVPGARERAEKGDLLFGTMDTWLLWNLTGGPR 174
Query: 334 --CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--------- 382
HVTDVTNASRTMLM++++L WDP L F +P ++LPEIR SSE+YG
Sbjct: 175 GGVHVTDVTNASRTMLMDLETLDWDPELLAAFGIPRSMLPEIRPSSEVYGTVRGRGILAG 234
Query: 383 -------------------------------------------VHSNNGLVTTVAYQFGP 399
V S +GL+TTVAYQFG
Sbjct: 235 VPIAGVLGDQQAALFGQTCFEAGEAKNTYGTGCFLLLNTGTEPVRSKHGLLTTVAYQFG- 293
Query: 400 DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAP 459
+YALEGSIAV G+ V+WLRDNL L+ E E+LA V G VYFVPAF GL+AP
Sbjct: 294 GQPAVYALEGSIAVTGSLVQWLRDNLGLIKTAAEIETLARTVEDNGGVYFVPAFSGLFAP 353
Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
YWR DARGVI G+T++ KGHI RA LEA FQTR++++
Sbjct: 354 YWRSDARGVIVGLTRYVNKGHIARAVLEATAFQTREVVD 392
Score = 99.0 bits (247), Expect = 4e-22
Identities = 41/100 (41%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
+ ID+GT + R + V + I P+ GW E DP EI + + + A
Sbjct: 2 VAAIDQGTTSTRCIVFDH-HGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGA- 59
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
L+ GL+ +DI +GITNQRETTVVWD TG P+YNAI
Sbjct: 60 --LAKAGLTPEDIAAVGITNQRETTVVWDRATGRPVYNAI 97
>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup includes Arabidopsis NHO1 (also known as
NONHOST1, or noh-host resistant 1) and other putative
plant glycerol kinases, which share strong homology with
glycerol kinases from bacteria, fungi, and animals.
Nonhost resistance of plants refers to the phenomenon
observed when all members of a plant species are
typically resistant to a specific parasite. NHO1 is
required for nonspecific resistance to nonhost
Pseudomonas bacteria, it is also required for resistance
to the fungal pathogen Botrytis cinerea. This subgroup
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 503
Score = 383 bits (986), Expect = e-129
Identities = 183/401 (45%), Positives = 245/401 (61%), Gaps = 59/401 (14%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
IG ID+GT + RF II + V SH ++ + I PQ GW E DPMEIL+ V+ M+ A
Sbjct: 1 YIGSIDQGTTSTRF-IIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGA 59
Query: 214 IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
+ K A GL D + +GITNQRETTVVW +TG PLYNAIVW D R +I ++ +
Sbjct: 60 LAKAKAKGLDVLDGLKAIGITNQRETTVVWSRSTGLPLYNAIVWMDARTSSICRRLEKEL 119
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTG- 331
P+ + +++ CGLP+S YFSA KL WL+++V V+ A+K LFGT+DTWL+WNLTG
Sbjct: 120 PEGGRHFVET-CGLPISTYFSATKLLWLMEHVDEVKAAVKSGDALFGTIDTWLIWNLTGG 178
Query: 332 ----RTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV---- 383
HVTD TNA+RTMLM++ +LQW K +P +ILP+I S+ E+ G++
Sbjct: 179 INGEEGVHVTDCTNAARTMLMDLKTLQWHEPTLKDLGIPRSILPKIISNVEVIGEISEGW 238
Query: 384 -----------------------------------------------HSNNGLVTTVAYQ 396
SN+GL+TT+AY+
Sbjct: 239 PFAGIQLAGCLGDQHAAMLGQQCRKGEAKSTYGTGCFILLNTGEQIIPSNHGLLTTIAYK 298
Query: 397 FGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
GPDA YALEGSIA+AGAAV+WLRD+L ++ + E ESLA+ V TG VYFVPAF GL
Sbjct: 299 LGPDAPTNYALEGSIAIAGAAVQWLRDSLGIIKSASEIESLAKTVNNTGGVYFVPAFNGL 358
Query: 457 YAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDIL 497
+AP+WR DARGV G+T++T K HI RA LE++CFQ +++L
Sbjct: 359 FAPWWRDDARGVCIGITRYTNKAHIARAVLESMCFQVKEVL 399
Score = 107 bits (269), Expect = 5e-25
Identities = 54/107 (50%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
IG ID+GT + RF II + V SH ++ + I PQ GW E DPMEIL+ V+ M+ A
Sbjct: 1 YIGSIDQGTTSTRF-IIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGA 59
Query: 85 IEKLSAHGLSRDD-IVTLGITNQRETTVVWDLNTGEPLYNAIDKMPS 130
+ K A GL D + +GITNQRETTVVW +TG PLYNAI M +
Sbjct: 60 LAKAKAKGLDVLDGLKAIGITNQRETTVVWSRSTGLPLYNAIVWMDA 106
>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the
glycerol kinases subfamily of the FGGY family of
carbohydrate kinases. This subgroup contains
uncharacterized bacterial proteins belonging to the
glycerol kinase subfamily of the FGGY family of
carbohydrate kinases. The glycerol kinase subfamily
includes glycerol kinases (GK; EC 2.7.1.30), and
glycerol kinase-like proteins from all three kingdoms of
living organisms. Glycerol is an important intermediate
of energy metabolism and it plays fundamental roles in
several vital physiological processes. GKs are involved
in the entry of external glycerol into cellular
metabolism. They catalyze the rate-limiting step in
glycerol metabolism by transferring a phosphate from ATP
to glycerol thus producing glycerol 3-phosphate (G3P) in
the cytoplasm. Under different conditions, GKs from
different species may exist in different oligomeric
states. The monomer of GKs is composed of two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Length = 487
Score = 329 bits (846), Expect = e-108
Identities = 138/364 (37%), Positives = 187/364 (51%), Gaps = 61/364 (16%)
Query: 188 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 247
I P+ GW E DP EI + + +E+ G+ +I LGITNQRETTV WD TG
Sbjct: 34 IYPENGWVEHDPEEIYENTLQAVKDLLEE---FGIDPAEIEGLGITNQRETTVAWDKRTG 90
Query: 248 EPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSV 307
+PLYNAIVW R I ++ L + + +K GL + PYFSA K++WL++NV V
Sbjct: 91 KPLYNAIVWQCQRGKAICER-LKEEGYAEL--IKQKTGLKIDPYFSASKMAWLLENVEGV 147
Query: 308 RRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP 367
R A + FGT+D+WL++ LT TD +NASRT L NI +L WD LC+ F +P
Sbjct: 148 REAASKGDLAFGTIDSWLIYKLTNGKSFKTDYSNASRTQLFNIHTLDWDEELCELFGIPR 207
Query: 368 TILPEIRSSSEI-----------------------------------------YGK---- 382
ILPE+ S + YG
Sbjct: 208 KILPEVLDSDSVFGYTDLNGILPHPIPIHGVLGDSHAALFGQGCFEPGMIKVTYGTGSSV 267
Query: 383 --------VHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRET 434
V S++GLVT++A + Y LEG+I GA + WL+D L L+ + ET
Sbjct: 268 MMNIGEKPVLSDHGLVTSLA--WSVGGKVTYVLEGNINYTGATITWLKDKLGLIQDPAET 325
Query: 435 ESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTR 494
E LA VY VPAF GL APYW+ DA+ I GMT+ T K ++RAALE+I +Q
Sbjct: 326 EELALSANPNDGVYLVPAFTGLGAPYWKSDAKAAIVGMTRTTGKAELVRAALESIAYQIN 385
Query: 495 DILE 498
D+++
Sbjct: 386 DVID 389
Score = 87.4 bits (217), Expect = 2e-18
Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 59 ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 118
I P+ GW E DP EI + + +E+ G+ +I LGITNQRETTV WD TG
Sbjct: 34 IYPENGWVEHDPEEIYENTLQAVKDLLEE---FGIDPAEIEGLGITNQRETTVAWDKRTG 90
Query: 119 EPLYNAI 125
+PLYNAI
Sbjct: 91 KPLYNAI 97
>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
putative bacterial glycerol kinases (GK), which may be
coded by the GK-like gene, GK2. Sequence comparison
shows members in this CD are homologs of Escherichia
coli GK. They retain all functionally important
residues, and may catalyze the Mg-ATP dependent
phosphorylation of glycerol to yield glycerol
3-phosphate (G3P). GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 484
Score = 272 bits (697), Expect = 7e-86
Identities = 138/397 (34%), Positives = 186/397 (46%), Gaps = 64/397 (16%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
I IDEGT + A++ V S S + PQ GW EQD I AVQ +A
Sbjct: 1 FILAIDEGTTNAK-AVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQ----QA 55
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
I A G+ ++ + I+NQRE+ V+WD TG PL + W R + A+
Sbjct: 56 IADCLA-GVLAAEVAAIAISNQRESVVIWDRQTGAPLGPVLSWQCRRTAAACAALRAE-- 112
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
+ + GLP+ P FSA K+ WL+ V + R GTVD+WL+WNLTG
Sbjct: 113 -GHEPMVAARTGLPIDPMFSASKMRWLLDRVDDGPARAAQGRLCLGTVDSWLLWNLTGGA 171
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIY------------- 380
TD +NA+RT L+++ QWDP L F +P LP++ +S+ +
Sbjct: 172 VFATDASNAARTQLLDLHGGQWDPQLLDLFGIPRAALPDVLASAGDFGHTRGLGGLPDGV 231
Query: 381 ------GKVH---------------------------------SNNGLVTTVAYQFGPDA 401
G H ++GL TT+A+ G
Sbjct: 232 PILAMIGDSHAALFGHGAFAPGEVKATYGTGSSVMTPLRQAIAPSHGLSTTIAWHDG--G 289
Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
P YALEG+I V GAAV W+ D L L D LA G VYFVPA GL AP+W
Sbjct: 290 EPTYALEGNITVTGAAVAWMADLLGLPD-PAALSELAATASDNGGVYFVPALTGLGAPWW 348
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+DARG+I G+T T + H+ RAALE+I FQ D+ E
Sbjct: 349 DRDARGLISGLTLGTGRAHLARAALESIAFQIADVFE 385
Score = 74.8 bits (184), Expect = 2e-14
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
I IDEGT + A++ V S S + PQ GW EQD I AVQ +A
Sbjct: 1 FILAIDEGTTNAK-AVLVDRDGTVVASGSAPVGIQYPQPGWVEQDAEAIWAAVQ----QA 55
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 121
I A G+ ++ + I+NQRE+ V+WD TG PL
Sbjct: 56 IADCLA-GVLAAEVAAIAISNQRESVVIWDRQTGAPL 91
>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like
proteins; belongs to the FGGY family of carbohydrate
kinases. This subgroup corresponds to a group of
metazoan putative glycerol kinases (GK), which may be
coded by the GK-like gene, GK5. Sequence comparison
shows members of this group are homologs of bacterial
GKs, and they retain all functionally important
residues. However, GK-like proteins in this family do
not have detectable GK activity. The reason remains
unclear. It has been suggested tha the conserved
catalytic residues might facilitate them performing a
distinct function. GKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 504
Score = 227 bits (581), Expect = 1e-68
Identities = 117/412 (28%), Positives = 181/412 (43%), Gaps = 78/412 (18%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+ +D GT T+R I Q EVV S D I + P+ G+ E DP ++ + + A
Sbjct: 2 VLALDVGTTTIRCFIYDR--QAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEA 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQ------ 267
++ L+ I LGI+ QR + + W+ +TG+P +N I W D RAD +V +
Sbjct: 60 VKD---ANLTAKQIAGLGISTQRGSFLTWNKSTGKPYHNFITWKDLRADELVKEWNNSLL 116
Query: 268 ---------VLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLF 318
VL + +L L L+L W++QN +++A+KE LF
Sbjct: 117 MKAIRVASKVLHLLTRSKR-FLAASV-LKFMNQHVTLRLLWVLQNNPELKKALKEGNVLF 174
Query: 319 GTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSE 378
GT+DTWL++ LTG HVTDV+NAS T L + +++W F +P +ILP++ +S
Sbjct: 175 GTIDTWLLYKLTGGKEHVTDVSNASATGLFDPFTMEWSSWALSLFGIPSSILPKVVDTSG 234
Query: 379 IYGKVH----------------------------------------------------SN 386
+G S
Sbjct: 235 DFGSTDPELFGVPIPIRASVGDQQAALFGSCCFERGDVKITMGTGAFVNINTGPKPHASV 294
Query: 387 NGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD 446
GL V ++ G + Y EG+ G A+ W + ++ L + ET +A V +
Sbjct: 295 KGLYPLVGWKIGNEVV--YLAEGASNDTGTAIDWAQ-SIGLFTDPAETSDMANSVPDSEG 351
Query: 447 VYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
VYF+PAF GL P A G+ TTK H++RA LE+I F+ + + E
Sbjct: 352 VYFIPAFSGLQPPINDPRACAGFIGLKPSTTKEHLVRALLESIAFRIKQLYE 403
Score = 68.9 bits (169), Expect = 2e-12
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+ +D GT T+R I Q EVV S D I + P+ G+ E DP ++ + + A
Sbjct: 2 VLALDVGTTTIRCFIYDR--QAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEA 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
++ L+ I LGI+ QR + + W+ +TG+P +N I
Sbjct: 60 VKD---ANLTAKQIAGLGISTQRGSFLTWNKSTGKPYHNFI 97
>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol
kinase-like proteins; belongs to the FGGY family of
carbohydrate kinases. This subgroup corresponds to a
small group of proteobacterial glycerol kinase (GK)-like
proteins, including the glycerol kinase from Pseudomonas
aeruginosa. Most bacteria, such as Escherichia coli,
take up glycerol passively by facilitated diffusion. In
contrast, P. aeruginosa may also utilize a binding
protein-dependent active transport system to mediate
glycerol transportation. The glycerol kinase
subsequently phosphorylates the intracellular glycerol
to glycerol 3-phosphate (G3P). GKs belong to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 470
Score = 223 bits (571), Expect = 2e-67
Identities = 121/390 (31%), Positives = 190/390 (48%), Gaps = 67/390 (17%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I ID+GT + R + + ++ ++ P GW E DP+E+L ++
Sbjct: 3 IAAIDQGTTSTRVLVAGEDGKAFIL-LALRHKQHYPNPGWVEHDPLELLANLRAC----- 56
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
L A G + +G+ NQ E+ + WD +GEPL IVW D R +++++++ A +
Sbjct: 57 --LEAAG----VVDAIGLANQGESCLAWDARSGEPLSPVIVWQDNRTESVLERLRA---E 107
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ ++ GLP+ YFSA KL W+++N+ +VRRA + R GT D + + LTG
Sbjct: 108 GAEAMVRARTGLPLDAYFSASKLGWILRNLPAVRRAHRRGRLRLGTTDAFFLDRLTGT-- 165
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV----------- 383
VTDVT ASRT LMN+++LQWDP LC+ F VP LPEIR + +G +
Sbjct: 166 FVTDVTTASRTSLMNLETLQWDPELCRLFGVPIECLPEIRPTVGDFGDIGCTPLTASIVD 225
Query: 384 -------HS-----------------------------NNGLVTTVAYQFGPDATPIYAL 407
H +GL+ TVA+Q G P+YAL
Sbjct: 226 QQASLYGHGCRQPGDAKITFGTGAFALAITGEVIPRAPGSGLLPTVAWQIG--EPPVYAL 283
Query: 408 EGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARG 467
+G + A AAV+W + L L + E + + FVPA GL P+W + A G
Sbjct: 284 DGGVYDAAAAVEWAK-RLGLFSDFEELAAFPAPPAIARGLAFVPALSGLACPHWDRSAAG 342
Query: 468 VICGMTQFTTKGHIIRAALEAICFQTRDIL 497
+ GM+ TT+ + +A LE + ++ +++
Sbjct: 343 LWLGMSLATTRQDMCQALLEGVAMRSAEVI 372
Score = 64.5 bits (157), Expect = 5e-11
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I ID+GT + R + + ++ ++ P GW E DP+E+L ++
Sbjct: 3 IAAIDQGTTSTRVLVAGEDGKAFIL-LALRHKQHYPNPGWVEHDPLELLANLRAC----- 56
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
L A G + +G+ NQ E+ + WD +GEPL I
Sbjct: 57 --LEAAG----VVDAIGLANQGESCLAWDARSGEPLSPVI 90
>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the C-terminal domain.
Length = 245
Score = 214 bits (546), Expect = 2e-66
Identities = 89/255 (34%), Positives = 127/255 (49%), Gaps = 23/255 (9%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+ ID GT + + + + + V S S + ISP+ GWAEQDP EI QA+ +A
Sbjct: 1 YVLGIDCGTTSTKAIVFNK-QGKVVASASAPYALISPKPGWAEQDPEEIWQALA----QA 55
Query: 214 IEK-LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
I K L G+S I +GI+ Q V+ D N +PLY AI+W+DTR IV+ + +
Sbjct: 56 IRKILQQSGISPKQIKGIGISGQGHGLVLLDKN-DKPLYPAILWNDTRTAEIVENLKEEG 114
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
D L I G + P F+ KL WL ++ + + F + +L W LTG+
Sbjct: 115 ---GADKLYEITGNTIWPGFTLSKLRWLKEHEPEIFERAR----KFLLIHDYLRWRLTGQ 167
Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTT 392
TD ++AS TM+ NI +L+WD L +PP +LP + SSEIYG L
Sbjct: 168 --FTTDYSDASGTMMFNIKTLEWDEELLAILGIPPDLLPPLVESSEIYGT------LNPE 219
Query: 393 VAYQFGPDA-TPIYA 406
A FG D P+
Sbjct: 220 HAALFGLDEGIPVVG 234
Score = 90.1 bits (224), Expect = 2e-20
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+ ID GT + + + + + V S S + ISP+ GWAEQDP EI QA+ +A
Sbjct: 1 YVLGIDCGTTSTKAIVFNK-QGKVVASASAPYALISPKPGWAEQDPEEIWQALA----QA 55
Query: 85 IEK-LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
I K L G+S I +GI+ Q V+ D N +PLY AI
Sbjct: 56 IRKILQQSGISPKQIKGIGISGQGHGLVLLDKN-DKPLYPAI 96
>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases. This family is
predominantly composed of glycerol kinase (GK) and
similar carbohydrate kinases including rhamnulokinase
(RhuK), xylulokinase (XK), gluconokinase (GntK),
ribulokinase (RBK), and fuculokinase (FK). These enzymes
catalyze the transfer of a phosphate group, usually from
ATP, to their carbohydrate substrates. The monomer of
FGGY proteins contains two large domains, which are
separated by a deep cleft that forms the active site.
One domain is primarily involved in sugar substrate
binding, and the other is mainly responsible for ATP
binding. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain.
Substrate-induced conformational changes and a divalent
cation may be required for the catalytic activity.
Length = 435
Score = 214 bits (548), Expect = 2e-64
Identities = 105/398 (26%), Positives = 161/398 (40%), Gaps = 69/398 (17%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I +D GT +V+ + + S + P+ GW EQDP EI QA+ + A
Sbjct: 2 ILGLDVGTTSVKAVLFD-EQGNILAEASREYEVSYPKPGWVEQDPEEIWQALCEVLREAA 60
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ S I +G+++Q E ++ D N G PL AI+W D+R +++ +
Sbjct: 61 AQASGG-----QIAAIGVSSQGEGVILVDAN-GRPLTPAILWQDSRTAEECERLEEQI-- 112
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
D + GL P FS KL WL ++ + TV +L + LTG
Sbjct: 113 -GADEIYERTGLRPHPMFSGPKLLWLKEHRPEIYSKAD----KILTVADYLAYRLTGE-- 165
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS--------- 385
V D +NASRTML +I + WDP L + +P +LPE+ E+ G + +
Sbjct: 166 FVIDYSNASRTMLFDIQTRDWDPELLEAAGIPRELLPEVVPPGEVAGAISAEAAALLGLP 225
Query: 386 -----------------------------NNGLVTTVAYQFGPDATPIYAL--------- 407
+ G + P+ L
Sbjct: 226 PGTPVVAGGHDQQCAALGAGAVDEGDAALSAGTSEVITAVSEPEPATDEGLLCYPAAIPG 285
Query: 408 ----EGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKV--MTTGDVYFVPAFGGLYAPYW 461
E S GA ++W RD L ++ + E+ A++ + +P F G PYW
Sbjct: 286 KYVTEASFFTGGALLRWFRDEFGLREDGSDYEAAAQEAPNSGPNGLLILPHFSGSGTPYW 345
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
ARG I G+T TT+ I RA LE I ++ RD L+
Sbjct: 346 DPAARGAIFGLTLGTTRADIYRALLEGIAYELRDNLDA 383
Score = 73.5 bits (181), Expect = 6e-14
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I +D GT +V+ + + S + P+ GW EQDP EI QA+ + A
Sbjct: 2 ILGLDVGTTSVKAVLFD-EQGNILAEASREYEVSYPKPGWVEQDPEEIWQALCEVLREAA 60
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ S I +G+++Q E ++ D N G PL AI
Sbjct: 61 AQASGG-----QIAAIGVSSQGEGVILVDAN-GRPLTPAI 94
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 182 bits (463), Expect = 2e-51
Identities = 105/405 (25%), Positives = 164/405 (40%), Gaps = 74/405 (18%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
L+G ID GT + + + EV+ S + +PQ GWAEQDP AV +
Sbjct: 2 LLG-IDIGTSSTKAVLFD--LDGEVLAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRE 58
Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
+ K +I +G++ Q T V D + G PL AI++ D RA V+++ +
Sbjct: 59 LVAKAGVDP---SEIKAIGVSGQGPTVVPVDKD-GRPLRPAIIYMDRRAKEEVEELKERI 114
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
+++ + G P+ + A K+ W +N + E F ++++V+ LTG
Sbjct: 115 GEEE---IFERTGNPLDSQYVAPKILWFKRN----EPEVWERTRKFLQSNSYIVYKLTGE 167
Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN----NG 388
D ++AS + L +I +W L +P +LP++ +I G V G
Sbjct: 168 L--AVDHSSASGSGLYDIRKGEWSEELLDLLGIPEDLLPKLVRPGDIVGTVTEEAAEETG 225
Query: 389 LV--TTVAY----------------------QFG-----------PDATP-----IYALE 408
L T V G P P + +
Sbjct: 226 LPAGTPVVAGGADAAAAALGAGVVEPGDAMEMLGTSGVIIVVTDRPKFDPRLISSPHVVP 285
Query: 409 GSIAVAG------AAVKWLRDNL------NLMDNVRETESLAEKVMT-TGDVYFVPAFGG 455
G+ + G AA++W RDN +D E E AEKV + F+P G
Sbjct: 286 GTYLLNGGMSTGGAALRWFRDNFGPEETEGGLDAYDELEEEAEKVPPGADGLLFLPYLAG 345
Query: 456 LYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
P W DARGV G+T T+ H+ RA LE + + R ILE+
Sbjct: 346 ERTPIWDPDARGVFFGLTLGHTRAHLYRAVLEGVAYALRHILEIA 390
Score = 51.4 bits (124), Expect = 6e-07
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
L+G ID GT + + + EV+ S + +PQ GWAEQDP AV +
Sbjct: 2 LLG-IDIGTSSTKAVLFD--LDGEVLAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRE 58
Query: 84 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ K +I +G++ Q T V D + G PL AI
Sbjct: 59 LVAKAGVDP---SEIKAIGVSGQGPTVVPVDKD-GRPLRPAI 96
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 172 bits (437), Expect = 9e-48
Identities = 108/401 (26%), Positives = 164/401 (40%), Gaps = 71/401 (17%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID GT +V+ + E V + + +PQ GWAEQDP E+ QA+ + + +E+
Sbjct: 8 GIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE 67
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
+ D I +GI+ Q V+ D N GEPL AI+W+DTRA V+++ +
Sbjct: 68 ---SKIDPDAIAAIGISGQGHGLVLLDAN-GEPLRPAILWNDTRAAEEVEELEERLG--- 120
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRAIKENRCLFGTVDTWLVWNLTGRTCH 335
+ L GL P F+A KL WL +N + +A K + +L + LTG
Sbjct: 121 GEALYARTGLQAMPGFTAPKLLWLKENEPDLFAKAAK-----ILLIKDYLRYRLTG--EF 173
Query: 336 VTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP-TILPEIRSSSEIYGKV----------- 383
T++++AS T L++I + +WD L +P +LP + E+ G +
Sbjct: 174 ATEISDASGTGLLDIRTRKWDWELLAALGLPERDLLPPVVEPGEVLGTLTPEAAEELGLP 233
Query: 384 ---------HSNN------GLV----------TTVAY----------QFGPDATPIYALE 408
N G V T+ G T L
Sbjct: 234 AGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAATDKPLDDPRGSIYTFCLGLP 293
Query: 409 GSIAVAGA------AVKWLRDNLNLMDNVRETESLAEKVMT---TGDVYFVPAFGGLYAP 459
G V GA ++WLR+ L ++ E A V + F+P G P
Sbjct: 294 GWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGP 353
Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
+ ARG G+T T+ H+ RA LE + F D LE
Sbjct: 354 HADPAARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEAL 394
Score = 65.5 bits (160), Expect = 2e-11
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID GT +V+ + E V + + +PQ GWAEQDP E+ QA+ + + +E+
Sbjct: 8 GIDIGTTSVKAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE 67
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAID 126
+ D I +GI+ Q V+ D N GEPL AI
Sbjct: 68 ---SKIDPDAIAAIGISGQGHGLVLLDAN-GEPLRPAIL 102
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 161 bits (410), Expect = 4e-44
Identities = 114/400 (28%), Positives = 169/400 (42%), Gaps = 70/400 (17%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
IG ID GT +V+ ++++ L E V S + +T SP GW+EQDP + AVQ ++
Sbjct: 2 YIG-IDIGTSSVKASLVN-LDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEAL 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
L G S +DI +G+T Q V+ D G L AI+W+DTR+ +V
Sbjct: 60 ---LDQAGDSAEDIAAIGVTGQMHGAVLLD-QQGRVLRPAILWNDTRS---APEVTELKA 112
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
+ I G +P ++ KL WL +N V R I + D ++ LTG
Sbjct: 113 RLGAEIFS-ITGNIPTPGWTLPKLLWLKENEPEVFRRI---ARVLLPKD-YIRLRLTGE- 166
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS----NNGL 389
TD ++AS T+L + S +W LC + +P +LP + SEI G V GL
Sbjct: 167 -LATDRSDASGTLLFDAASREWSDDLCALYGIPEDLLPPLHEPSEIAGAVTPEAARKTGL 225
Query: 390 VT-------------------------------TVAYQFGPDATPIYALEGSI------- 411
T P+ +G++
Sbjct: 226 KAGTPVVAGAGDNAAAALGAGVVDPGQASLSLGTSGVVAVVSEGPVPDPKGAVITFAHAV 285
Query: 412 ----------AVAGAAVKWLRDNLNLMD-NVRETESLAEKVMTTGD-VYFVPAFGGLYAP 459
AG+A++W RD L D + E LA +V + + F+P G P
Sbjct: 286 PGRWYQVTCTNSAGSALRWARDLLGPADVSYAEMAELAAQVPVGANGLLFLPYLNGERTP 345
Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
Y +ARG G+T T+GH+ RA LE + F RD LE+
Sbjct: 346 YNDPNARGAFFGLTLSHTRGHLARAVLEGVAFSLRDCLEV 385
Score = 53.5 bits (129), Expect = 1e-07
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
IG ID GT +V+ ++++ L E V S + +T SP GW+EQDP + AVQ ++
Sbjct: 2 YIG-IDIGTSSVKASLVN-LDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEAL 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
L G S +DI +G+T Q V+ D G L AI
Sbjct: 60 ---LDQAGDSAEDIAAIGVTGQMHGAVLLD-QQGRVLRPAI 96
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 149 bits (379), Expect = 1e-39
Identities = 107/409 (26%), Positives = 168/409 (41%), Gaps = 87/409 (21%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 212
+G ID GT V+ ++ EVV S S + P+ GW+EQDP + +A + +
Sbjct: 2 YLG-IDLGTSGVKALLVDE--DGEVVASASAEYPLSQPKPGWSEQDPEDWWEATKAAIRE 58
Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
+ K G++ ++ +G++ Q V+ D G+ L AI+W+D R +++ +
Sbjct: 59 LLAK---SGIAGGEVRGIGLSGQMHGLVLLD-KDGKVLRPAILWNDQRTTAECEEITERV 114
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENR-CLFGTVDT------WL 325
+ L I G P P F+A KL WL +E+ F + +L
Sbjct: 115 GGE----LIEITGNPALPGFTAPKLLWL-----------REHEPENFAKIAKVLLPKDYL 159
Query: 326 VWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--- 382
+ LTG TDV++AS T+L+++ W L + ILPE+ SSE+ G
Sbjct: 160 RYRLTG--EIATDVSDASGTLLLDVAKRDWSDELLDALGIDRAILPELYESSEVTGTLTA 217
Query: 383 ------------------------------VHSNNGLVT--TVAYQFGPDATPIYALEGS 410
V + V+ T F +P EG
Sbjct: 218 EAAAELGLPAGTPVVAGGGDNAAGAVGNGVVRPGDAFVSLGTSGVVFAVSDSPAPDPEGR 277
Query: 411 I-----AV------------AGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD--VYFVP 451
+ AV AG ++KW RD D+ E + AE+V G + F+P
Sbjct: 278 VHTFCHAVPGRWYLMGVTLSAGGSLKWFRDTFGPDDSYEELLAEAEQV-PPGSEGLLFLP 336
Query: 452 AFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
G P+ +ARG G+T T+ H+ RA LE + F RD LE+
Sbjct: 337 YLSGERTPHNDPNARGAFIGLTLSHTRAHLTRAVLEGVAFSLRDSLEIL 385
Score = 57.9 bits (141), Expect = 6e-09
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDR 83
+G ID GT V+ ++ EVV S S + P+ GW+EQDP + +A + +
Sbjct: 2 YLG-IDLGTSGVKALLVDE--DGEVVASASAEYPLSQPKPGWSEQDPEDWWEATKAAIRE 58
Query: 84 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ K G++ ++ +G++ Q V+ D G+ L AI
Sbjct: 59 LLAK---SGIAGGEVRGIGLSGQMHGLVLLD-KDGKVLRPAI 96
>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of a group of gluconate kinases (GntK, also
known as gluconokinase; EC 2.7.1.12) encoded by the gntK
gene, which catalyzes the ATP-dependent phosphorylation
of D-gluconate and produce 6-phospho-D-gluconate and
ADP. The presence of Mg2+ might be required for
catalytic activity. The prototypical member of this
subfamily is GntK from Lactobacillus acidophilus. Unlike
Escherichia coli GntK, which belongs to the superfamily
of P-loop containing nucleoside triphosphate hydrolases,
members in this subfamily are homologous to glycerol
kinase, xylulose kinase, and rhamnulokinase from
Escherichia coli. They have been classified as members
of the FGGY family of carbohydrate kinases, which
contain two large domains separated by a deep cleft that
forms the active site. This model spans both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Some uncharacterized homologous sequences are also
included in this subfamily. The Lactobacillus gnt operon
contains a single gntK gene. The gnt operons of some
bacteria, such as Corynebacterium glutamicum, have two
gntK genes. For example, the C. glutamicum gnt operon
has both a gluconate kinase gntV gene (also known as
gntK) and a second hypothetical gntK gene (also known as
gntK2). Both gluconate kinases encoded by these genes
belong to this family, however the protein encoded by C.
glutamicum gntV is not included in this model as it is
truncated in the C-terminal domain.
Length = 440
Score = 136 bits (344), Expect = 3e-35
Identities = 99/404 (24%), Positives = 152/404 (37%), Gaps = 83/404 (20%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
++GV D GT + + A++ V S +P +G AEQDP EI AV +D
Sbjct: 2 ILGV-DIGTTSTK-AVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEV 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
+ K I + ++ + + D + GEPL I W+DTRA +++ +
Sbjct: 60 VAKALG-----GRIAAVSFSSAMHSLIALDED-GEPLTPVITWADTRAAEYAEELKERLD 113
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
++ Y + G P+ P + KL WL + R + F ++ ++++ L G
Sbjct: 114 GRE-LYQR--TGCPLHPMYPLAKLLWLKEE----RPELFAKAAKFVSIKEYVLYRLFGE- 165
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTV 393
V D + AS T L+NI +L WD + + LPE+ ++E GL
Sbjct: 166 -LVVDYSIASGTGLLNIHTLDWDEEALEIAGISEEQLPELVPTTEQLR------GLKAER 218
Query: 394 AYQFG-PDATPIYA---------------LEGSIA------------------------- 412
A + G P+ TP G A
Sbjct: 219 APKLGLPEDTPFVLGASDGALSNLGVGAVDPGVAAITIGTSGAIRVVLDQPVTDPPGRLF 278
Query: 413 ---------VAGAAV-------KWLRDNLNLMDNVRETESLAEKVMTTGD--VYFVPAFG 454
V G AV +WLRD L L E E L + F+PA
Sbjct: 279 CYRLDKGRWVLGGAVNNGGIVLRWLRDTLAL-PEEEEAEELGIDPYDGLTRGLEFLPAGA 337
Query: 455 GLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
G P W R + G+T+ I AA+E + + R ILE
Sbjct: 338 GERFPPWLSGERAPLWGLTRAARGSFIGLAAMEGVAHRLRAILE 381
Score = 47.2 bits (113), Expect = 1e-05
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
++GV D GT + + A++ V S +P +G AEQDP EI AV +D
Sbjct: 2 ILGV-DIGTTSTK-AVLFDEDGRIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEV 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ K I + ++ + + D + GEPL I
Sbjct: 60 VAKALG-----GRIAAVSFSSAMHSLIALDED-GEPLTPVI 94
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 134 bits (339), Expect = 3e-34
Identities = 107/396 (27%), Positives = 161/396 (40%), Gaps = 70/396 (17%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
ID GT V+ ++ E + S S + ISP GW+EQDP + A + AI++L
Sbjct: 3 IDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDAT----EEAIKEL 57
Query: 218 SA-HGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
DI +GI+ Q V+ D N GE L AI+W+DTR +++ A+ D+
Sbjct: 58 LEQASEMGQDIKGIGISGQMHGLVLLDAN-GEVLRPAILWNDTRTAQECEELEAELGDER 116
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHV 336
+ I G P F+A KL W+ ++ V I + +L + LTG +V
Sbjct: 117 ---VLEITGNLALPGFTAPKLLWVRKHEPEVFARIAK----VMLPKDYLRYRLTG--EYV 167
Query: 337 TDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK----VHSNNGLVTT 392
T+ ++AS T ++ W L +P + LPE+ SSE G V + GL
Sbjct: 168 TEYSDASGTGWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAG 227
Query: 393 V-----------------------------------AYQFGPDATPIYALEG-------- 409
V A P P A+ G
Sbjct: 228 VPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGG 287
Query: 410 --SIAV---AGAAVKWLRDNLNLMDNVRETESLAEKV-MTTGDVYFVPAFGGLYAPYWRK 463
+ V A ++++W R+ D V LAE+ V F+P G P+
Sbjct: 288 WLPMGVTLSATSSLEWFRELFGKED-VEALNELAEQSPPGAEGVTFLPYLNGERTPHLDP 346
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
ARG G+T TT+ + RA LE + F RD L++
Sbjct: 347 QARGSFIGLTHNTTRADLTRAVLEGVTFALRDSLDI 382
Score = 56.9 bits (138), Expect = 1e-08
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
ID GT V+ ++ E + S S + ISP GW+EQDP + A + AI++L
Sbjct: 3 IDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDAT----EEAIKEL 57
Query: 89 SA-HGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
DI +GI+ Q V+ D N GE L AI
Sbjct: 58 LEQASEMGQDIKGIGISGQMHGLVLLDAN-GEVLRPAI 94
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 131 bits (331), Expect = 5e-33
Identities = 89/418 (21%), Positives = 145/418 (34%), Gaps = 90/418 (21%)
Query: 158 IDEGTRTVRFAIISA---LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
ID GT V+ A++S L ++ G AEQDP + AV R +
Sbjct: 5 IDLGTSGVKAALVSPDGRLVASATEAYETHY----LPGGGAEQDPEDWWDAVVRATRRLL 60
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
E G++ + + + Q + V D G PL AI+W D RA ++++
Sbjct: 61 ED---SGVNPRRVAGISFSGQMQGVVPVD-EDGRPLRPAIIWMDQRAAPEAERLMEGLGK 116
Query: 275 QDK------DYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRAIKENRCLFGTVDTWLVW 327
+L+ G P S K+ WL N V + K F +L
Sbjct: 117 VAGYGLKLLKWLRLTGGAPKSGKDPLAKILWLRDNEPDVYAKTYK-----FLDAKDYLNL 171
Query: 328 NLTGRTCHVTDVTNASRTMLMNI--DSLQWDPLLCKYFAVPP--------------TILP 371
LTGR TD +AS T L + ++W L + T+LP
Sbjct: 172 RLTGR--FATDPDDASLTWLTDNRDGRIRWSEELLAAAGIDREKLPELVPSTDVVGTVLP 229
Query: 372 EIR------------------SSSEI----------YGKVHSNNGLVTTVAYQFGPD--- 400
E S++ + + + +++ + T V +
Sbjct: 230 EAARELGLPEGTPVVAGGGDASAAAVGAGAVADGDAHLYLGTSSWIATHVPFPKTDVRHR 289
Query: 401 ----ATPI---YALEGSIAVAGAAVKWLRDNL----------NLMDNVRETESLAEKVMT 443
I Y + AG A++WL+D L + LA
Sbjct: 290 IFSLPHAIPGKYLVVAEQETAGGALEWLKDLLLQDEDGLADEEGRSVYERLDELAASAPP 349
Query: 444 -TGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
+ + F+P G +P +ARG ++ TT+ ++RA LE + R +LE
Sbjct: 350 GSNGLIFLPWLHGERSPVEDPNARGGFFNLSLETTRADLLRAVLEGVALNLRWLLEAV 407
Score = 50.3 bits (121), Expect = 1e-06
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 29 IDEGTRTVRFAIISA---LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
ID GT V+ A++S L ++ G AEQDP + AV R +
Sbjct: 5 IDLGTSGVKAALVSPDGRLVASATEAYETHY----LPGGGAEQDPEDWWDAVVRATRRLL 60
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
E G++ + + + Q + V D G PL AI
Sbjct: 61 ED---SGVNPRRVAGISFSGQMQGVVPVD-EDGRPLRPAI 96
>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-xylulose kinases (L-XK, also
known as L-xylulokinase; EC 2.7.1.53), which catalyze
the ATP-dependent phosphorylation of L-xylulose to
produce L-xylulose 5-phosphate and ADP. The presence of
Mg2+ might be required for catalytic activity. Some
uncharacterized sequences are also included in this
subfamily. L-XKs belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 447
Score = 124 bits (313), Expect = 7e-31
Identities = 91/409 (22%), Positives = 152/409 (37%), Gaps = 80/409 (19%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
L+G ID GT TV A++ L E+ S T++PQ G+ EQD E+ +AV +
Sbjct: 2 LLG-IDAGT-TVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIREL 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
+EK G+ +DI +G+T Q + + D G+P+ I+ D+RA +V++
Sbjct: 60 LEKA---GVDAEDIAGIGVTGQGDGLWLVD-KEGKPVGPGILSLDSRAAELVERWQEDGT 115
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKEN-RCLFGTVDTWLVWNLTGR 332
+ + + G + + L+WL ++ + D W+ + LTG
Sbjct: 116 EDA---IFELTGQGLWAGQPSSLLAWLKEH----EPERLARAGTVLFCKD-WIRFRLTGE 167
Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTI--LPEIRSSSEIYGKVHSN---- 386
TD T+AS + L+++ + Q+D L + LP I S++I G + +
Sbjct: 168 AA--TDPTDASGSSLLDLRTGQYDDELLDLLGLEEIRDLLPPIVDSADIVGTLTAEAAAL 225
Query: 387 ----------NGLVTTVAYQFG---------------------------PDATP----IY 405
GL VA G P+A P +Y
Sbjct: 226 TGLPAGTPVVGGLFDVVACALGSGLVDEGDLCSIAGTWSINEVLSDDPVPEAEPFGYSLY 285
Query: 406 ALEG-----SIAVAGAA-VKWLRDNL--------NLMDNVRETESLAEKVMTTGDVYFVP 451
G + A+ + W L + L Y
Sbjct: 286 LPPGYYLVEESSPTSASNLDWFLRTLLEDEAAKASGGSLYALLNRLVAAAPPEYHPYLFE 345
Query: 452 AFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
F L +AR G++ + T+ ++RA E + F RD LE
Sbjct: 346 PF--LRGSNVDPNARAGFFGLSAWHTRADLVRAVYEGVAFAHRDHLEAL 392
Score = 54.1 bits (131), Expect = 7e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
L+G ID GT TV A++ L E+ S T++PQ G+ EQD E+ +AV +
Sbjct: 2 LLG-IDAGT-TVTKAVLFDLDGREIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIREL 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+EK G+ +DI +G+T Q + + D G+P+ I
Sbjct: 60 LEKA---GVDAEDIAGIGVTGQGDGLWLVD-KEGKPVGPGI 96
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 117 bits (296), Expect = 9e-29
Identities = 93/404 (23%), Positives = 152/404 (37%), Gaps = 90/404 (22%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID GT + + + +G DP E+ +A++ + +A+
Sbjct: 4 GIDVGTTNTKVVVFD-DDGTIIAIRKFKTPKNV-SDGGPYFDPDELWRAIEKVICQALAA 61
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
+ D I + IT+ E+ V+ D + GEPLY AI W D R + +++ + P
Sbjct: 62 ------APDPIAAISITSVGESGVLVDAD-GEPLYPAIAWYDRRTEEEAEELRKQDP--- 111
Query: 277 KDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWL------VWNLT 330
+ I GLP P +S K+ WL ++ V + WL ++ LT
Sbjct: 112 GLAIYEITGLPPDPIYSLFKILWLREHRPEVWKR----------AYKWLHIPDYILFRLT 161
Query: 331 GRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYF-----AVPP-----TILPEIRSSS--- 377
GR VTD T ASRT+L +I + +W L + F A+P TI+ E+ +
Sbjct: 162 GRP--VTDFTLASRTLLFDIRAREWSEELLEMFGIPPDALPELVPSGTIIGEVSKDAAES 219
Query: 378 -----------------------------EIYGKVHSNNGLVTTVAYQFGPDATP----- 403
+I + + L+ + + T
Sbjct: 220 LGLSTGTPVVLGGHDHPVGSYAAGVIDPGDILDSMGTAEALLAIASAKLKETLTREGVAF 279
Query: 404 -------IYALEGSIAVAGAAVKWLRDNLNLMDN-VRETESLAEKVMTTGDVYFVPAFGG 455
Y L + G A++WLR+ L + R E L + F P G
Sbjct: 280 GVYAEPDRYYLIAGLPSGGFAIEWLRNILGGEASSKRAQEKLLDSA-----ALFYPYSRG 334
Query: 456 LYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
+P + A G G+T T++ I R+ LE + F+ R LE
Sbjct: 335 SGSPIRSEIAGGAFYGLTDTTSQEDITRSVLEGLTFEARSTLEC 378
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 100 bits (250), Expect = 2e-24
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 393 VAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRET---ESLAEKVM-----TT 444
V + + + LEG + AG+ + WL L + +R+ ESLA +
Sbjct: 25 VWGPYTNE--GGWGLEGGQSAAGSLLGWLLQTLRAREELRDAGLVESLALLLALAADAPA 82
Query: 445 GDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
G + F+P F G AP ARG I G++ TT ++ RA LE + R ILE
Sbjct: 83 GGLLFLPDFSGERAPGADPHARGAITGLSSPTTLANLYRALLEGLALALRQILE 136
>gnl|CDD|198377 cd07811, FGGY_D-XK_3, D-xylulose kinases, subgroup 3; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of proteobacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17). They share
high sequence similarity with Escherichia coli
xylulokinase (EcXK), which catalyzes the rate-limiting
step in the ATP-dependent phosphorylation of D-xylulose
to produce D-xylulose 5-phosphate (X5P) and ADP. Some
uncharacterized sequences are also included in this
subfamily. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 493
Score = 84.9 bits (210), Expect = 2e-17
Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 20/262 (7%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
LI ID GT + R A++ + + PQ GW+EQ P++ Q +
Sbjct: 1 LILAIDVGTGSTRAALVRIDGAIVAFAAR-EHEQTVPQFGWSEQRPLDWWQGACDCIREV 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
+ ++ + + I +G Q TV+ D A +W+D R VD A+
Sbjct: 60 LARVPG---AAERIAVIGACGQMHGTVLLDDAGELTRDTAPLWNDKRTQPQVDAFEAR-- 114
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQN-VSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
+ + YL P +P + A KL+W +N + R K + D ++ + LTG
Sbjct: 115 NGWEKYL-AHLANPPAPAWPAFKLAWWRENDPQAYSRLAK----VLMPKD-YINFMLTGA 168
Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTT 392
TD T AS + LM+ + W C+ + +LP +R +I G+V +T
Sbjct: 169 M--ATDRTEASCSFLMDPATRSWSSQACETMGLDVDLLPPLRLPLDIIGQVTQPAADLTG 226
Query: 393 VAYQFGPDATPIYALEGSIAVA 414
+ P P+ A+A
Sbjct: 227 L-----PAGIPVLVGASDYAMA 243
Score = 37.9 bits (88), Expect = 0.013
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
LI ID GT + R A++ + + PQ GW+EQ P++ Q +
Sbjct: 1 LILAIDVGTGSTRAALVRIDGAIVAFAAR-EHEQTVPQFGWSEQRPLDWWQGACDCIREV 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGE------PLYN 123
+ ++ + + I +G Q TV+ D + GE PL+N
Sbjct: 60 LARVPG---AAERIAVIGACGQMHGTVLLD-DAGELTRDTAPLWN 100
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 84.7 bits (210), Expect = 2e-17
Identities = 87/405 (21%), Positives = 151/405 (37%), Gaps = 85/405 (20%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
+D GT++ + I+ EV++ ++ IS G EQ P + A+ +A+
Sbjct: 5 VDCGTQSTK-VIVLDAETGEVLAEGSAPHEL--ISGSNGRREQQPQWWIDALVEAFRQAL 61
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
G+ ++ +G++ Q+ V D GE L A +W DT +++ K
Sbjct: 62 ADA---GIDPKEVRAIGVSGQQHGLVPLD-AQGEVLRPAKLWCDTETAPENAELIEKL-G 116
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTV----DTWLVWNLT 330
K +++ + G ++A KL WL ++ I T+ D +L + LT
Sbjct: 117 GAKAWIERL-GNAPLTGYTASKLLWLKEHEPENFAKIA-------TILLPHD-YLNFWLT 167
Query: 331 GRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFA---VPPTILPEIRSSSEIYGKVHS-- 385
GR T+ +AS T ++ + +W + LP + S E G V
Sbjct: 168 GRYV--TEYGDASGTGYFDVRTREWSEEVLDAIDPALDLADALPTLLSPDEPAGTVRPEA 225
Query: 386 -----------------------------NNGLVT----TVAYQFGPDATPIYALEGSIA 412
G+VT T + P+ +G +A
Sbjct: 226 AEALGLSGDVLVASGGGDNMMGAIGTGNVKPGVVTMSLGTSGTLYAYSDKPVVDPQGEVA 285
Query: 413 -VAGAAVKWL---------------RDNLNLMDNVRETESLAEKV-MTTGDVYFVPAFGG 455
+ WL R+ L L ++ E +LA + + +P F G
Sbjct: 286 GFCSSTGGWLPLICTMNVTVATEQVRNLLGL--DIEELNALAAQAPPGAEGLTLLPFFNG 343
Query: 456 LYAPYWRKDARGVICGMTQF-TTKGHIIRAALEAICFQTRDILEL 499
P +ARG + G+T TT+ ++ RAA+E F R L+L
Sbjct: 344 ERTPN-LPNARGSLHGLTSANTTRANLARAAVEGATFGLRYGLDL 387
Score = 36.1 bits (84), Expect = 0.043
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
+D GT++ + I+ EV++ ++ IS G EQ P + A+ +A+
Sbjct: 5 VDCGTQSTK-VIVLDAETGEVLAEGSAPHEL--ISGSNGRREQQPQWWIDALVEAFRQAL 61
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNA 124
G+ ++ +G++ Q+ V D GE L A
Sbjct: 62 ADA---GIDPKEVRAIGVSGQQHGLVPLD-AQGEVLRPA 96
>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This
subfamily consists of uncharacterized hypothetical
bacterial proteins with similarity to Escherichia coli
sugar kinase ygcE , whose functional roles are not yet
clear. Escherichia coli ygcE is recognized by this
model, but is not present in the alignment as it
contains a deletion relative to other members of the
group. These proteins belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 488
Score = 83.4 bits (207), Expect = 4e-17
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 24/233 (10%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTI-SPQEGWAEQDPMEILQAVQTTMDRAIEK 216
ID GT++VR A++ V + I SP+ GWAEQDP QA+ E+
Sbjct: 5 IDCGTQSVR-ALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACRELWEQ 63
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
+ I + +T QRET V+ D + G+PL AI+W D RA +Q+
Sbjct: 64 ---IPVDPGRIAGVALTTQRETFVLLDKD-GKPLRPAILWLDQRA---AEQLPP--LAWW 114
Query: 277 KDYLKPICGLPVS--PYFSALKLSWLIQNVSSV-RRAIKENRCLFGTVDTWLVWNLTGRT 333
L + G P + + K +W+ +N + + K F + +L + LTGR
Sbjct: 115 IRLLFKLIGKPETIDVIPAEAKANWIRENEPEIWAKTAK-----FLLLSGYLTYKLTGR- 168
Query: 334 CHVTDVTNASRTMLMNIDSLQW-DPLLCKY--FAVPPTILPEIRSSSEIYGKV 383
V V + + + +W K+ F + P LPE+ ++ G +
Sbjct: 169 -FVDSVASQVGYIPFDYKKRRWAKKEDLKWQGFPIEPEQLPELVPPGKLIGTI 220
Score = 58.8 bits (143), Expect = 3e-09
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDISTI-SPQEGWAEQDPMEILQAVQTTMDRAIEK 87
ID GT++VR A++ V + I SP+ GWAEQDP QA+ E+
Sbjct: 5 IDCGTQSVR-ALLFDRQGNLVAKGQVPIEPYYSPKPGWAEQDPDYYWQALCEACRELWEQ 63
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ I + +T QRET V+ D + G+PL AI
Sbjct: 64 ---IPVDPGRIAGVALTTQRETFVLLDKD-GKPLRPAI 97
Score = 48.0 bits (115), Expect = 8e-06
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
P+W +ARG I G T+ H+ RA +E I + R+ LE
Sbjct: 357 PHWDPEARGAIIGFGDVHTRAHLYRAIIEGIAYALREGLER 397
>gnl|CDD|130381 TIGR01314, gntK_FGGY, gluconate kinase, FGGY type. Gluconate is
derived from glucose in two steps. This model describes
one form of gluconate kinase, belonging to the FGGY
family of carbohydrate kinases. Gluconate kinase
phosphoryates gluconate for entry into the
Entner-Douderoff pathway [Energy metabolism, Sugars].
Length = 505
Score = 83.4 bits (206), Expect = 5e-17
Identities = 95/400 (23%), Positives = 154/400 (38%), Gaps = 78/400 (19%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+IGV D GT + + A++ + V S+ +P G AE++P EI +AV T+
Sbjct: 2 MIGV-DIGTTSTK-AVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREV 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
L D+I+ + + Q + + +D N +PL I W+D RA +Q+
Sbjct: 60 SINLE----DEDEILFVSFSTQMHSLIAFDENW-QPLTRLITWADNRAVKYAEQIKE--- 111
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
++ + G P+ P K+ WL + I + + + ++ L G
Sbjct: 112 SKNGFDIYRRTGTPIHPMAPLSKIIWL----EAEHPDIYQKAAKYLEIKGYIFQRLFGT- 166
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEI-------YGK---- 382
+ D + AS T + N+ L WD + + + LP++ ++EI Y K
Sbjct: 167 -YKIDYSTASATGMFNLFELDWDKEALELTGIKESQLPKLVPTTEIEENLPHEYAKKMGI 225
Query: 383 -------------VHSN-----------------NGLVTTVAYQFGPDA---TPIYALEG 409
V SN +G + TV + D YAL
Sbjct: 226 QSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTK 285
Query: 410 SIAVAGAAV-------KWLRDNL----------NLMDNVRETESLAEKVMTTGD-VYFVP 451
V G V +W RD + +D +A +V D + F P
Sbjct: 286 EHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHP 345
Query: 452 AFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICF 491
G AP W +ARG G+T K H+IRAALE + +
Sbjct: 346 YLAGERAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIY 385
Score = 32.6 bits (74), Expect = 0.55
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+IGV D GT + + A++ + V S+ +P G AE++P EI +AV T+
Sbjct: 2 MIGV-DIGTTSTK-AVLFEENGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREV 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
L D+I+ + + Q + + +D N +PL I
Sbjct: 60 SINLE----DEDEILFVSFSTQMHSLIAFDENW-QPLTRLI 95
>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of
the FGGY family of carbohydrate kinases. This subgroup
is predominantly composed of bacterial D-xylulose
kinases (XK, also known as xylulokinase; EC 2.7.1.17).
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. EcXK exists as a dimer. Each monomer consists
of two large domains separated by an open cleft that
forms an active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 490
Score = 77.1 bits (190), Expect = 5e-15
Identities = 67/265 (25%), Positives = 111/265 (41%), Gaps = 45/265 (16%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHS-----MDISTISPQEGWAEQDPMEILQAVQT 208
+G D G+ +++ A++ A T + + S S M+I +SPQ GWAEQDP
Sbjct: 2 FLG-YDIGSSSIKAALVDAETGKSLASVSYPEQEMEI--LSPQPGWAEQDPEIWWDYTCA 58
Query: 209 TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQV 268
+ I + +I +GI+ Q V+ D G L AI+W D+RA V
Sbjct: 59 ATKQLINQGKEDL---SNIQAIGISYQMHGLVLVDKQ-GNVLRPAIIWCDSRA---VSIG 111
Query: 269 LAKFPDQDKDY-LKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRC-LFGTVDT--- 323
F + +D+ L + P + F+A KL+W +KEN +F +
Sbjct: 112 EKAFQELGEDFCLSHLLNSPGN--FTASKLAW-----------VKENEPEVFDRIAKIML 158
Query: 324 ---WLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIY 380
++ LTG T + S ML + + L +Y + +++P+I +
Sbjct: 159 PGDYIAMKLTGEVT--TTKSGLSEGMLWDFKKNEVAVELLEYLGLDRSLIPDIVPNFSEQ 216
Query: 381 GKVHSNNGLVTTVAYQFG-PDATPI 404
G V S +A + G + PI
Sbjct: 217 GTVTS------EIAAELGLSEGIPI 235
Score = 55.9 bits (135), Expect = 2e-08
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHS-----MDISTISPQEGWAEQDPMEILQAVQT 79
+G D G+ +++ A++ A T + + S S M+I +SPQ GWAEQDP
Sbjct: 2 FLG-YDIGSSSIKAALVDAETGKSLASVSYPEQEMEI--LSPQPGWAEQDPEIWWDYTCA 58
Query: 80 TMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ I + +I +GI+ Q V+ D G L AI
Sbjct: 59 ATKQLINQGKEDL---SNIQAIGISYQMHGLVLVDKQ-GNVLRPAI 100
>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is predominantly composed of
uncharacterized bacterial and eukaryotic proteins with
similarity to human sedoheptulokinase (SHK, also known
as D-altro-heptulose or heptulokinase, EC 2.7.1.14)
encoded by the carbohydrate kinase-like (CARKL/SHPK)
gene. SHK catalyzes the ATP-dependent phosphorylation of
sedoheptulose to produce sedoheptulose 7-phosphate and
ADP. The presence of Mg2+ or Mn2+ might be required for
catalytic activity. Members of this subfamily belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 75.0 bits (185), Expect = 2e-14
Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 45/267 (16%)
Query: 158 IDEGTRTVRFAIISALTQEEV----VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
ID GT +V+ ++ + T+E + S ++ + P EQD +IL T+D
Sbjct: 6 IDIGTTSVKACLLDSETKEVLASQSKPTSANVPSDGPLGS--EQDVDKILS----TLDSC 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWD-----------LNTGEPLYNAIVWSDTRAD 262
+++L L + +G+T Q V+W T P+ N W D R
Sbjct: 60 LKRLPKELLK--KVKAIGVTGQMHGIVLWKQDQSCEDGDLISITNTPVSNLYTWQDGRCS 117
Query: 263 NIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVD 322
+ L P KP LP+ F L WL +N E+ GT+
Sbjct: 118 ---EDFLKSLP-------KPQSHLPIHTGFGCATLFWLQKN----GPEFLESFDHCGTIQ 163
Query: 323 TWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK 382
++V L G + V NA+ ++++ W+ + + P +LPE+ I G
Sbjct: 164 DFVVAMLCGLSRPVMSPHNAASWGYFDLETNAWNSEILQAAGFPVHLLPEVVPPGTIAGT 223
Query: 383 VHSNNGLVTTVAYQFGPDATPIYALEG 409
+ + + P TP+ G
Sbjct: 224 LGGD--------WYGIPKGTPVGVALG 242
Score = 39.6 bits (93), Expect = 0.003
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 29 IDEGTRTVRFAIISALTQEEV----VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
ID GT +V+ ++ + T+E + S ++ + P EQD +IL T+D
Sbjct: 6 IDIGTTSVKACLLDSETKEVLASQSKPTSANVPSDGPLGS--EQDVDKILS----TLDSC 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIDKMPSLVYN 134
+++L L + +G+T Q V+W + + I + V N
Sbjct: 60 LKRLPKELLK--KVKAIGVTGQMHGIVLWKQDQSCEDGDLISITNTPVSN 107
>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is composed of ribulokinases (RBKs) and
similar proteins from bacteria and eukaryota. RBKs
catalyze the MgATP-dependent phosphorylation of a
variety of sugar substrates including L- and/or
D-ribulose. Members of this subfamily contain two large
domains separated by a deep cleft that forms the active
site. This model includes both the N-terminal domain,
which adopts a ribonuclease H-like fold, and the
structurally related C-terminal domain. Members of this
subfamily belong to the FGGY family of carbohydrate
kinases.
Length = 465
Score = 70.6 bits (173), Expect = 5e-13
Identities = 65/233 (27%), Positives = 91/233 (39%), Gaps = 20/233 (8%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-GWAEQDPMEILQAVQTTMDRA 213
IGV D GT +VR A + L E+ S S P GWAEQDP + AV+T + A
Sbjct: 4 IGV-DVGTESVR-AGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRAA 61
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
+ +A G+ D + LG+ T V D G+PL A++W D RA + + +
Sbjct: 62 V---AAAGVDPDQVAALGVDATSCTVVPLDAE-GQPLTPALLWDDHRAADQANAINEVGG 117
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
DY G VSP + K+ WL+Q D WL W LTG+
Sbjct: 118 PALWDYG----GKIVSPEWMLPKVLWLLQEAPDTWNRA---DHFLEAPD-WLGWRLTGKR 169
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPP---TILPEIRSSSEIYGKV 383
T A +W + P LP + + G +
Sbjct: 170 PVATCSAVAKWGYDAREG--EWANSVFDKLGDPRLTAAKLPAVVAPLTRAGGL 220
Score = 47.9 bits (114), Expect = 7e-06
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQE-GWAEQDPMEILQAVQTTMDRA 84
IGV D GT +VR A + L E+ S S P GWAEQDP + AV+T + A
Sbjct: 4 IGV-DVGTESVR-AGVFDLNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRAA 61
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ +A G+ D + LG+ T V D G+PL A+
Sbjct: 62 V---AAAGVDPDQVAALGVDATSCTVVPLDAE-GQPLTPAL 98
Score = 42.5 bits (100), Expect = 4e-04
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 407 LEGSIAVAGAAVKWLRDNLNLMDNVRET--------ESLAEKVMTTGDVYFVPAFGGLYA 458
LEG + G W D L E + AE+ + + F G +
Sbjct: 295 LEGGQSATGGIFLWFVDVGRLAATFDEAQEKGVALDAAAAERGPQLRGLLALDRFNGNRS 354
Query: 459 PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
P+ + RG + G+T T + I RA LEA+ F TR I+E
Sbjct: 355 PFVDPELRGFLLGLTLPTDRADIYRALLEAVAFGTRLIVE 394
>gnl|CDD|198353 cd07775, FGGY_AI-2K, Autoinducer-2 kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial autoinducer-2 (AI-2) kinases and
similar proteins. AI-2 is a small chemical
quorum-sensing signal involved in interspecies
communication in bacteria. Cytoplasmic autoinducer-2
kinase, encoded by the lsrK gene from Salmonella
enterica serovar Typhimurium lsr (luxS regulated)
operon, is the prototypical member of this subfamily.
AI-2 kinase catalyzes the phosphorylation of
intracellular AI-2 to phospho-AI-2, which leads to the
inactivation of lsrR, the repressor of the lsr operon.
Members of this family are homologs of glycerol
kinase-like proteins and belong to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 452
Score = 69.0 bits (169), Expect = 2e-12
Identities = 51/240 (21%), Positives = 89/240 (37%), Gaps = 38/240 (15%)
Query: 157 VIDEGTRTVRFAIIS------ALTQEEV-------VSHSMDISTISPQEGWAEQDPMEIL 203
D GT +VR I A++QEE SMD PQ W
Sbjct: 4 AFDAGTGSVRAVIFDLTGNQIAVSQEEWEHLAEPRYPGSMDFD---PQVNW--------- 51
Query: 204 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 263
+ + L+ G++ DI + T+ RE V++D G ++ A D RA
Sbjct: 52 ---KLVCRCIRQALARSGIAPIDIAAVSATSMREGIVLYD-QNGNEIW-ACANVDARAAE 106
Query: 264 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDT 323
V ++ PD +K+ + + +L WL Q+ + +
Sbjct: 107 EVRELKEWEPDLEKEIYRSSGQTFA--LGALPRLLWLKQHRPDIYEKTAS----VTMISD 160
Query: 324 WLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV 383
W+++ L+G + +NA T L ++ + W P + + I P + + + G V
Sbjct: 161 WILYKLSGVL--AVEPSNAGTTGLFDLKTRDWSPEMLDIVGLRDDIFPPVVETGTVIGTV 218
Score = 34.0 bits (78), Expect = 0.19
Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 29/108 (26%)
Query: 28 VIDEGTRTVRFAIIS------ALTQEEV-------VSHSMDISTISPQEGWAEQDPMEIL 74
D GT +VR I A++QEE SMD PQ W
Sbjct: 4 AFDAGTGSVRAVIFDLTGNQIAVSQEEWEHLAEPRYPGSMDFD---PQVNW--------- 51
Query: 75 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY 122
+ + L+ G++ DI + T+ RE V++D G ++
Sbjct: 52 ---KLVCRCIRQALARSGIAPIDIAAVSATSMREGIVLYD-QNGNEIW 95
>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional.
Length = 484
Score = 62.7 bits (152), Expect = 2e-10
Identities = 81/302 (26%), Positives = 129/302 (42%), Gaps = 36/302 (11%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
ID GT V+ I+ E V S + ++ P W+EQDP + QA DRA++ L
Sbjct: 5 IDLGTSGVK-VILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKAL 59
Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
S D+ LGI Q + D L AI+W+D R + A+ P
Sbjct: 60 GDQH-SLQDVKALGIAGQMHGATLLD-AQQRVLRPAILWNDGRCAQECALLEARVPQS-- 115
Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVT 337
+ I G + P F+A KL W+ ++ + R I ++ L +L +TG +
Sbjct: 116 ---RVITGNLMMPGFTAPKLLWVQRHEPEIFRQI--DKVLLPK--DYLRLRMTGE--FAS 166
Query: 338 DVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTVAYQF 397
D+++A+ TM +++ W ++ + + +P + SEI G L+ VA +
Sbjct: 167 DMSDAAGTMWLDVAKRDWSDVMLQACHLSRDQMPALYEGSEITGA------LLPEVAKAW 220
Query: 398 GPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLY 457
G P+ A G A AGA + ++D + SL T VYF + G L
Sbjct: 221 GMATVPVVAGGGDNA-AGAV------GVGMVDANQAMLSLG-----TSGVYFAVSEGFLS 268
Query: 458 AP 459
P
Sbjct: 269 KP 270
Score = 39.6 bits (92), Expect = 0.004
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
ID GT V+ I+ E V S + ++ P W+EQDP + QA DRA++ L
Sbjct: 5 IDLGTSGVK-VILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKAL 59
Query: 89 SAHGLSRDDIVTLGITNQRETTVVWD 114
S D+ LGI Q + D
Sbjct: 60 GDQH-SLQDVKALGIAGQMHGATLLD 84
Score = 31.1 bits (70), Expect = 1.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 444 TGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRD 495
V+F+P G P+ A+GV G+T + RA LE + + D
Sbjct: 324 AEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALAD 375
>gnl|CDD|198349 cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial L-rhamnulose kinases
(RhuK, also known as rhamnulokinase; EC 2.7.1.5), which
are encoded by the rhaB gene and catalyze the
ATP-dependent phosphorylation of L-rhamnulose to produce
L-rhamnulose-1-phosphate and ADP. Some uncharacterized
homologous sequences are also included in this
subfamily. The prototypical member of this subfamily is
Escherichia coli RhuK, which exists as a monomer
composed of two large domains. The ATP binding site is
located in the cleft between the two domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of divalent Mg2+ or Mn2+
is required for catalysis. Although an intramolecular
disulfide bridge is present in Rhuk, disulfide formation
is not important to the regulation of RhuK enzymatic
activity. Members of this subfamily belong to the FGGY
family of carbohydrate kinases.
Length = 440
Score = 62.1 bits (152), Expect = 3e-10
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 247 GEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSS 306
GE L N + D R D ++++V + P K+ L G+ P+ + +L L
Sbjct: 87 GELLGNPYHYRDPRTDGVMEEVFERIP---KEELYERTGIQFMPFNTLYQLYALK----- 138
Query: 307 VRRAIKENRCLFGTVDTWL------VWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLC 360
KE L D L + LTG V + TNAS T L++ + WD L
Sbjct: 139 -----KEGPELLEKADKLLMIPDLLNYLLTGVK--VNEYTNASTTQLLDPRTRDWDTELL 191
Query: 361 KYFAVPPTILPEIRSSSEIYGKVHS 385
+ +P + P + + G +
Sbjct: 192 EKLGIPEELFPPLVEPGTVLGPLKP 216
>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and
ribulose-phosphate 3-epimerase fusion proteins-like;
belongs to the FGGY family of carbohydrate kinases.
This subgroup is composed of uncharacterized proteins
with similarity to carbohydrate kinases. Some members
are carbohydrate kinase and ribulose-phosphate
3-epimerase fusion proteins. Carbohydrate kinases
catalyze the ATP-dependent phosphorylation of their
carbohydrate substrate to produce phosphorylated sugar
and ADP. The presence of Mg2+ is required for catalytic
activity. This subgroup shows high homology to
characterized ribulokinases and belongs to the FGGY
family of carbohydrate kinases, the monomers of which
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 484
Score = 60.8 bits (148), Expect = 7e-10
Identities = 57/180 (31%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
ID GT +VR + T + S + T P+ GWAEQ+P + +A+ + A L
Sbjct: 6 IDGGTESVRAGLF-DTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVREA---L 61
Query: 218 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDK 277
+ G++ D+ L T V D G PL AI+W D RA +VLA D +
Sbjct: 62 AEAGIAAPDVAALCCDTTCCTVVALDAA-GTPLRPAILWMDVRAAEEAARVLATGDDALR 120
Query: 278 DYLKPICGLPVSPYFSALKLSWLIQNVSSV-RRA--IKENRCLFGTVDTWLVWNLTGRTC 334
G VS + K WL +N V RA I E D +L + LTGR C
Sbjct: 121 -LNGS--GGGVSAEWMVPKAMWLKKNEPDVYARAATICE------AQD-YLNFRLTGRWC 170
Score = 51.2 bits (123), Expect = 8e-07
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNV--RETESLAEKVMTTGDVYFVPAFGGLYA---- 458
+ +EG G+ +KW +D + D+ E A V P GL
Sbjct: 294 WLVEGGQTSTGSVLKWFKDLIGGGDDNGYDELNEEAAAV--------PPGSEGLVVLDYF 345
Query: 459 -----PYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
PY ARG I G+T T+ H+ RA LE + + TR I +
Sbjct: 346 QGNRTPYTDPLARGAIWGLTLGHTRAHVYRAILEGVAYGTRHIFD 390
Score = 44.6 bits (106), Expect = 8e-05
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
ID GT +VR + T + S + T P+ GWAEQ+P + +A+ + A L
Sbjct: 6 IDGGTESVRAGLF-DTTGRPLGSAAAPYGTTHPRPGWAEQNPEDWWEALGAAVREA---L 61
Query: 89 SAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ G++ D+ L T V D G PL AI
Sbjct: 62 AEAGIAAPDVAALCCDTTCCTVVALDAA-GTPLRPAI 97
>gnl|CDD|198369 cd07798, FGGY_AI-2K_like, Autoinducer-2 kinase-like proteins;
belongs to the FGGY family of carbohydrate kinases.
This subgroup consists of uncharacterized hypothetical
bacterial proteins with similarity to bacterial
autoinducer-2 (AI-2) kinases, which catalyzes the
phosphorylation of intracellular AI-2 to phospho-AI-2,
leading to the inactivation of lsrR, the repressor of
the lsr operon. Members of this subgroup belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 437
Score = 54.2 bits (130), Expect = 8e-08
Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 38/237 (16%)
Query: 157 VIDEGTRTVRFAIISA------LTQEEVVSHS----MDISTISPQEGWAEQDPMEILQAV 206
V D GT R A++SA + +E++ ++ D SP+E W + +
Sbjct: 4 VFDIGTGNARVAVVSADGTVWGIEREDIEYYTDKLYPDARYFSPEELWKQ---------L 54
Query: 207 QTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVD 266
+++ ++ + T+QR+ V+ + G+ DN
Sbjct: 55 LGGAKELLKESPEI-----PVIGITSTSQRQGIVLINKV-GKAFLGL-----PNIDNRGR 103
Query: 267 QVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLV 326
+ A D+++ Y K G + FSA KL L + S+ I + ++ W+
Sbjct: 104 EWEAGIEDREEIYEK--TGRLPTALFSAAKLMGLKKRQPSLWAGIAK----ITSISDWVT 157
Query: 327 WNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV 383
L+G V + + A T+L +++S +W LC F + ILPE+ + GK+
Sbjct: 158 EMLSGIL--VYEPSQACETLLFDVESKEWSERLCGIFGISMDILPELVRAGTSLGKI 212
>gnl|CDD|212663 cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis
carbohydrate kinase-like subgroup; belongs to the FGGY
family of carbohydrate kinases. This subgroup is
composed of the uncharacterized Yersinia
Pseudotuberculosis carbohydrate kinase that has been
named glyerol/xylulose kinase and similar
uncharacterized proteins from bacteria and eukaryota.
Carbohydrate kinases catalyze the ATP-dependent
phosphorylation of their carbohydrate substrate to
produce phosphorylated sugar and ADP. The presence of
Mg2+ is required for catalytic activity. This subgroup
shows high homology to characterized ribulokinases and
belongs to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 536
Score = 48.3 bits (116), Expect = 6e-06
Identities = 51/200 (25%), Positives = 77/200 (38%), Gaps = 37/200 (18%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
IGV D GT + R + A + +++ I PQ + EQ +I QAV + A
Sbjct: 4 IGV-DVGTGSARAGLFDA--KGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAVCQAVKAA 60
Query: 214 IEKLSAHGLSRDDI-----------VTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRAD 262
I + G+ + + V L Q +V G+ N IVW D RA
Sbjct: 61 I---AGAGVDPEQVKGIGFDATCSLVVLDKEGQ-PLSVSPS---GDNEQNIIVWMDHRA- 112
Query: 263 NIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNV-SSVRRAIKENRCLFGTV 321
+ + A+ + + G +SP KL WL +N+ + RA K F
Sbjct: 113 --ISE--AERINATGHPVLKYVGGVISPEMETPKLLWLKENLPETWSRAGK----FFDLP 164
Query: 322 DTWLVWNLTGR----TCHVT 337
D +L W TG C +
Sbjct: 165 D-FLTWRATGSETRSLCTLV 183
Score = 40.6 bits (96), Expect = 0.002
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 444 TGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIR---AALEAICFQTRDILE 498
T D++ +P F G +P + RGVI G+T T+ + R A L+AI + TR I+E
Sbjct: 374 TRDLHVLPDFHGNRSPLADPNLRGVISGLTLDTSLDDLARLYLATLQAIAYGTRHIIE 431
Score = 34.9 bits (81), Expect = 0.096
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
IGV D GT + R + A + +++ I PQ + EQ +I QAV + A
Sbjct: 4 IGV-DVGTGSARAGLFDA--KGRLLARAVRPIQIWHPQPDFVEQSSDDIWQAVCQAVKAA 60
Query: 85 IEKLSAHGLSRDDIVTLG 102
I + G+ + + +G
Sbjct: 61 I---AGAGVDPEQVKGIG 75
>gnl|CDD|223995 COG1069, AraB, Ribulose kinase [Energy production and conversion].
Length = 544
Score = 46.9 bits (112), Expect = 2e-05
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 24/187 (12%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+IGV D GT + R + T + P AEQ + +AV +
Sbjct: 5 VIGV-DVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDV 63
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY---------NAIVWSDTRADNI 264
+ K G+ D+V +G+ + + VV D G PL N I+W D RA
Sbjct: 64 VAKA---GVDPADVVGIGV-DATCSLVVID-RDGNPLAVLPEFPNNPNVILWMDHRA--- 115
Query: 265 VDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTW 324
V++ A+ + + G +SP KL WL + +V E + W
Sbjct: 116 VEE--AEEINATCHPVLDYYGGKISPEMMIPKLMWLKREAPAVW----ERAAHIFDLADW 169
Query: 325 LVWNLTG 331
L W LTG
Sbjct: 170 LTWKLTG 176
Score = 40.4 bits (95), Expect = 0.002
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 427 LMDNVRETESLAEKVMT-TGDVYFVPAFGGLYAPYWRKDARGVICGM---TQFTTKGHII 482
L + A + ++ + F G +P +GVI G+ T + +
Sbjct: 348 LAQRLELLTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLY 407
Query: 483 RAALEAICFQTRDILE 498
RA LEA F TR I+E
Sbjct: 408 RALLEATAFGTRAIIE 423
Score = 36.5 bits (85), Expect = 0.030
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+IGV D GT + R + T + P AEQ + +AV +
Sbjct: 5 VIGV-DVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDV 63
Query: 85 IEKLSAHGLSRDDIVTLGI 103
+ K G+ D+V +G+
Sbjct: 64 VAKA---GVDPADVVGIGV 79
>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial ribulokinases (RBK) which catalyze
the MgATP-dependent phosphorylation of L(or D)-ribulose
to produce L(or D)-ribulose 5-phosphate and ADP. RBK
also phosphorylates a variety of other sugar substrates
including ribitol and arabitol. The reason why L-RBK can
phosphorylate so many different substrates is not yet
clear. The presence of Mg2+ is required for catalytic
activity. This group belongs to the FGGY family of
carbohydrate kinases, the monomers of which contain two
large domains, which are separated by a deep cleft that
forms the active site. This model includes both the
N-terminal domain, which adopts a ribonuclease H-like
fold, and the structurally related C-terminal domain.
Length = 498
Score = 44.5 bits (106), Expect = 9e-05
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 40/204 (19%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSH-------SMDISTISPQEGWAEQDPMEILQAVQ 207
IG +D GT +VR ++ T E+ S M A Q P + ++ ++
Sbjct: 4 IG-LDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLE 62
Query: 208 TTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLY---------NAIV--W 256
T + +++ G+ DD+V +G+ T + D + G PL +A V W
Sbjct: 63 TAIPEVLKEA---GVDPDDVVGIGVDTTGSTPIPVDED-GTPLCLLPEFKNNPHAYVKLW 118
Query: 257 SDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRC 316
D A D++ A ++ +DYL+ G S W + V R E
Sbjct: 119 KDHTAQKEADRITALAHERGEDYLR-YYGGVYS-------SEWFWPKILHVLR---EAPE 167
Query: 317 LFGTVDT------WLVWNLTGRTC 334
++ D+ W+ LTG T
Sbjct: 168 VYEAADSWVEACDWIPAQLTGTTD 191
Score = 43.0 bits (102), Expect = 3e-04
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSH-------SMDISTISPQEGWAEQDPMEILQAVQ 78
IG +D GT +VR ++ T E+ S M A Q P + ++ ++
Sbjct: 4 IG-LDFGTLSVRALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLE 62
Query: 79 TTMDRAIEKLSAHGLSRDDIVTLGI 103
T + +++ G+ DD+V +G+
Sbjct: 63 TAIPEVLKEA---GVDPDDVVGIGV 84
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 466 RGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
G+I G+T T I RA +EA F R I+E +
Sbjct: 395 TGLILGLTLQTKAEEIYRALIEATAFGARAIIERF 429
>gnl|CDD|131676 TIGR02628, fuculo_kin_coli, L-fuculokinase. Members of this family
are L-fuculokinase, from the clade that includes the
L-fuculokinase of Escherichia coli. This enzyme
catalyzes the second step in fucose catabolism. This
family belongs to FGGY family of carbohydrate kinases
(pfam02782, pfam00370). It is encoded by the kinase (K)
gene of the fucose (fuc) operon [Energy metabolism,
Sugars].
Length = 465
Score = 44.1 bits (104), Expect = 1e-04
Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 10/165 (6%)
Query: 221 GLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYL 280
L+ I + +T +D G LY I W R ++D + D L
Sbjct: 65 ELTEKHIRGIAVTTFGVDGAPFD-KQGNQLYPIISWKCPRTAPVMDNIERLL---DAQRL 120
Query: 281 KPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVT 340
I G+ + + KL WL ++ + + ++ +F + + + LTG TD+T
Sbjct: 121 YAINGIGAYSFNTLYKLVWLKEHHPQLFE--RMHKFVF--ISSMITHRLTGE--FTTDIT 174
Query: 341 NASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385
A +M+ ++ W P + + + + P + + E G + +
Sbjct: 175 MAGTSMMTDLTQRNWSPQILQALGLSRRLFPPLVEAGEQIGTLQN 219
Score = 30.2 bits (68), Expect = 2.9
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 466 RGVICGMTQFTTKGHIIRAALEAICFQTRDILEL 499
+G I G+T TT+GHI RAALE + Q + L++
Sbjct: 352 QGGIQGLTLNTTRGHIYRAALEGLTAQLKRNLQM 385
>gnl|CDD|182853 PRK10939, PRK10939, autoinducer-2 (AI-2) kinase; Provisional.
Length = 520
Score = 44.2 bits (105), Expect = 1e-04
Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 40/241 (16%)
Query: 157 VIDEGTRTVRFAI-------ISALTQE------EVVSHSMDISTISPQEGWAEQDPMEIL 203
+D GT ++R I I+ E V SM+ ++ W
Sbjct: 7 ALDAGTGSIRAVIFDLNGNQIAVGQAEWRHLAVPDVPGSMEFDL---EKNW--------- 54
Query: 204 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADN 263
Q + +A++K G+ DI + T+ RE V++D N G ++ A D RA
Sbjct: 55 QLACQCIRQALQK---AGIPASDIAAVSATSMREGIVLYDRN-GTEIW-ACANVDARASR 109
Query: 264 IVDQVLAKFPDQDKDYLKPICGLPVSPYFSAL-KLSWLIQNVSSVRRAIKENRCLFGTVD 322
V ++ + +++ + G ++ AL +L WL + + R +
Sbjct: 110 EVSELKELHNNFEEEVYR-CSGQTLA--LGALPRLLWLAHHRPDIYRQAHT----ITMIS 162
Query: 323 TWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK 382
W+ + L+G D +NA T L+++ + WDP L + + ILP ++ + + G
Sbjct: 163 DWIAYMLSGEL--AVDPSNAGTTGLLDLVTRDWDPALLEMAGLRADILPPVKETGTVLGH 220
Query: 383 V 383
V
Sbjct: 221 V 221
>gnl|CDD|233356 TIGR01315, 5C_CHO_kinase, FGGY-family pentulose kinase. This model
represents a subfamily of the FGGY family of
carbohydrate kinases. This subfamily is closely related
to a set of ribulose kinases, and many members are
designated ribitol kinase. However, the member from
Klebsiella pneumoniae, from a ribitol catabolism operon,
accepts D-ribulose and to a lesser extent D-arabinitol
and ribitol (PMID:9639934 and JW Lengeler, personal
communication); its annotation in GenBank as ribitol
kinase is imprecise and may have affected public
annotation of related proteins.
Length = 541
Score = 43.0 bits (101), Expect = 3e-04
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 406 ALEGSIAVAGAAVKWLRDNLN-LMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKD 464
A + ++ A AA K + D LN + + + + P G +P +
Sbjct: 339 AYDETVKEAEAAGKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPN 398
Query: 465 ARGVICGMTQFTTKGHIIR---AALEAICFQTRDILE 498
RGVI G++ +K + A +E I + TR I+E
Sbjct: 399 MRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVE 435
Score = 42.6 bits (100), Expect = 4e-04
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 37/192 (19%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMDRA 213
IGV D GT + R II + ++++ + I T +P G Q + I QA+ + +
Sbjct: 3 IGV-DVGTGSARACIID--STGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQV 59
Query: 214 I-----EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL---------YNAIVWSDT 259
+ + S G+ D +L VV + GEPL N I+W D
Sbjct: 60 LAESKVDPNSVKGIGFDATCSL---------VVLTHD-GEPLPVSKNGGADQNIILWMDH 109
Query: 260 RADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFG 319
RA +++ A L G +S K+ WL N+ RC F
Sbjct: 110 RALAEAEKINAT-----NHNLLRYVGGKMSVEMEIPKVLWLKNNMPP----ELFARCKFF 160
Query: 320 TVDTWLVWNLTG 331
+ +L W TG
Sbjct: 161 DLTDFLTWRATG 172
>gnl|CDD|198351 cd07773, FGGY_FK, L-fuculose kinases; a subfamily of the FGGY
family of carbohydrate kinases. This subfamily is
composed of bacterial L-fuculose kinases (FK, also known
as fuculokinase, EC 2.7.1.51), which catalyze the
ATP-dependent phosphorylation of L-fuculose to produce
L-fuculose-1-phosphate and ADP. The presence of Mg2+ or
Mn2+ is required for enzymatic activity. FKs belong to
the FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 448
Score = 39.4 bits (92), Expect = 0.004
Identities = 52/233 (22%), Positives = 91/233 (39%), Gaps = 22/233 (9%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSM----DISTISPQEGWAEQDPMEILQAVQTTMDR 212
V+D G VR ++ Q V S S+ + + D EI Q + +
Sbjct: 4 VLDCGATNVRAIAVNEQGQI-VASASLPNATKQGIENND--YHIWDFDEIWQKLVECATQ 60
Query: 213 AIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKF 272
+ +L+A IV + +T D G LY I W R ++ + +
Sbjct: 61 VLSQLNA-----KQIVAITVTTFGVDGAPVD-KQGNQLYPIISWKCPRTAPVMKNIENEI 114
Query: 273 PDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGR 332
D+ L I G+ + + KL WL +N + K ++ +F + + L LTG
Sbjct: 115 ---DRLSLYQINGVGAYSFNTLYKLVWLKENHPQLLE--KMHKFVF--ISSMLTHRLTGE 167
Query: 333 TCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHS 385
TD T A +M+ ++ S W P + Y + + P + + E G + +
Sbjct: 168 F--TTDRTMAGTSMMTDLTSGNWSPSILAYLGLSRELFPPLVDAGEKIGLLTT 218
Score = 34.8 bits (80), Expect = 0.11
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 445 GDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQ 492
V F P F L D G I G++ TT+GHI RAALE + Q
Sbjct: 337 DGVNFEPDFLQL------GDGNGSIEGLSLHTTRGHIYRAALEGLTNQ 378
>gnl|CDD|235221 PRK04123, PRK04123, ribulokinase; Provisional.
Length = 548
Score = 39.1 bits (92), Expect = 0.005
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 466 RGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+GVI G+T T I RA +EA F TR I+E
Sbjct: 398 KGVITGLTLGTDAPDIYRALIEATAFGTRAIME 430
Score = 32.5 bits (75), Expect = 0.51
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMD------ISTISPQEGWAEQDPMEILQAVQT 79
IG+ D GT +VR ++ T EE+ + ++ + A Q P++ +++++
Sbjct: 6 IGL-DFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEA 64
Query: 80 TMDRAIEKLSAHGLSRDDIVTLGI 103
+ +++ G+ +V +G+
Sbjct: 65 AIPAVLKE---AGVDPAAVVGIGV 85
Score = 32.5 bits (75), Expect = 0.51
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMD------ISTISPQEGWAEQDPMEILQAVQT 208
IG+ D GT +VR ++ T EE+ + ++ + A Q P++ +++++
Sbjct: 6 IGL-DFGTDSVRALLVDCATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEA 64
Query: 209 TMDRAIEKLSAHGLSRDDIVTLGI 232
+ +++ G+ +V +G+
Sbjct: 65 AIPAVLKE---AGVDPAAVVGIGV 85
>gnl|CDD|233955 TIGR02627, rhamnulo_kin, rhamnulokinase. This model describes
rhamnulokinase, an enzyme that catalyzes the second step
in rhamnose catabolism.
Length = 454
Score = 39.0 bits (91), Expect = 0.006
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 25/226 (11%)
Query: 173 LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232
LT EE+ H + + Q G D + Q ++ + K+ A G++ D ++GI
Sbjct: 24 LTLEEI--HRFK-NGLVSQNGHECWDIDALEQEIRL----GLNKVDAEGIAPD---SIGI 73
Query: 233 TNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYF 292
V+ D N G+ + + + + D+R D ++ QV ++ K+ + G+ P+
Sbjct: 74 DTWGVDFVLLDQN-GQRVGDPVSYRDSRTDGVMAQVQSELG---KEAIYQRTGIQFLPFN 129
Query: 293 SALKLSWLI-QNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNID 351
+ +L L Q + + F + +L + LTG+ V + TNA+ T L+NI+
Sbjct: 130 TLYQLRALTEQQPDLLEKVAH-----FLLIPDYLNYRLTGKK--VWEYTNATTTQLVNIN 182
Query: 352 SLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGL---VTTVA 394
+ WD L Y VP + G G V VA
Sbjct: 183 TDDWDEDLLAYLGVPAAWFGRPTHPGNVIGLWECPQGNQIPVVAVA 228
>gnl|CDD|182383 PRK10331, PRK10331, L-fuculokinase; Provisional.
Length = 470
Score = 38.5 bits (90), Expect = 0.007
Identities = 41/192 (21%), Positives = 70/192 (36%), Gaps = 33/192 (17%)
Query: 201 EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTR 260
ILQ + +L+ I + +T + D G LY I W R
Sbjct: 51 AILQRFADCCRQINSELTE-----CHIRGITVTTFGVDGALVD-KQGNLLYPIISWKCPR 104
Query: 261 ADNIVDQVLAKFPDQDKDYLKPICGLPVSPY-FSAL-KLSWLIQNVSSVRRAIKENRC-L 317
+++ + ++ + L+ I G V + F+ L KL WL KEN L
Sbjct: 105 TAAVMEN-IERYISAQQ--LQQISG--VGAFSFNTLYKLVWL-----------KENHPQL 148
Query: 318 FGTVDTWLV------WNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILP 371
WL LTG TD+T A + +++I + P + + + + P
Sbjct: 149 LEQAHAWLFISSLINHRLTGE--FTTDITMAGTSQMLDIQQRDFSPEILQATGLSRRLFP 206
Query: 372 EIRSSSEIYGKV 383
+ + E G +
Sbjct: 207 RLVEAGEQIGTL 218
Score = 36.2 bits (84), Expect = 0.038
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 465 ARGVICGMTQFTTKGHIIRAALEAICFQTR 494
G+T TT+GH RAALE + Q +
Sbjct: 347 QNAGWQGVTLNTTRGHFYRAALEGLTAQLK 376
>gnl|CDD|182609 PRK10640, rhaB, rhamnulokinase; Provisional.
Length = 471
Score = 38.2 bits (89), Expect = 0.010
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 324 WLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKV 383
+ + LTG+ + TNA+ T L+NI+S WD L + P + G
Sbjct: 145 YFSYRLTGKM--NWEYTNATTTQLVNINSDDWDESLLAWSGAPKAWFGRPTHPGNVIGHW 202
Query: 384 HSNNGL---VTTVA 394
G V VA
Sbjct: 203 ICPQGNEIPVVAVA 216
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
Length = 574
Score = 32.3 bits (73), Expect = 0.74
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 376 SSEIYGKVHSNNGLVTT---------VAYQFGPDATPIYALEGSIAVAGAAVKWLRDN-- 424
++E+ G VHS +G + T VAY + + + + AG +D
Sbjct: 36 ATEMIGYVHSIDGTIATLIPAPGNPGVAY----NTIIMIQVSPTTFAAGLVFNLEKDGRI 91
Query: 425 -LNLMDNVRETESLAEKVMTTGDVYFVPAFGGL 456
+ LMDN+ E +S +KVM TG + ++P G+
Sbjct: 92 GIILMDNITEVQS-GQKVMATGKLLYIPVGAGV 123
>gnl|CDD|130301 TIGR01234, L-ribulokinase, L-ribulokinase. This enzyme catalyzes
the second step in arabinose catabolism. The most
closely related protein subfamily outside the scope of
this model includes ribitol kinase from E. coli [Energy
metabolism, Sugars].
Length = 536
Score = 31.8 bits (72), Expect = 0.80
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 453 FGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
F G +P + +GVI G+T T + RA +EA F TR I+E +
Sbjct: 382 FNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETF 429
Score = 29.5 bits (66), Expect = 4.2
Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 32/200 (16%)
Query: 155 IGVIDEGTRTVRFAIISALTQEE-----------VVSHSMDISTISPQEGWAEQDPMEIL 203
IGV D GT + R + T EE V + + A Q P + +
Sbjct: 4 IGV-DFGTLSGRALAVDVATGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYI 62
Query: 204 QAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYN----------- 252
+ ++ + + +L G+ D+V +G+ T D + G PL
Sbjct: 63 EVLEAAIPTVLAEL---GVDPADVVGIGVDFTACTPAPID-SDGNPLCLLPEFAENPHAY 118
Query: 253 AIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIK 312
+W A D++ + L G+ S +F A K+ + + ++ +A
Sbjct: 119 FKLWKHHAAQEEADRINRLAHAPGEVDLSRYGGIISSEWFWA-KILQITEEDPAIYQAA- 176
Query: 313 ENRCLFGTVDTWLVWNLTGR 332
+R + W+V L+G
Sbjct: 177 -DRWIELA--DWIVAQLSGD 193
>gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase.
Length = 530
Score = 30.8 bits (70), Expect = 2.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 416 AAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFV 450
A+KWLRD RE SL +V+ TG ++ V
Sbjct: 493 LAIKWLRDC------ARENPSLRFQVLVTGSLHLV 521
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 29.5 bits (67), Expect = 4.1
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 54 MDISTISPQEGWAEQDPMEIL----------QAVQTTMDRAIEKLSAHGLSRDDIVTLGI 103
M I + P WA+ P I Q + +D+ + G+ V L
Sbjct: 1 MMIFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRG 60
Query: 104 TNQRETTVVW 113
N ET + +
Sbjct: 61 KNSPETLLAY 70
Score = 29.5 bits (67), Expect = 4.1
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 183 MDISTISPQEGWAEQDPMEIL----------QAVQTTMDRAIEKLSAHGLSRDDIVTLGI 232
M I + P WA+ P I Q + +D+ + G+ V L
Sbjct: 1 MMIFSDWPWRHWAQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRG 60
Query: 233 TNQRETTVVW 242
N ET + +
Sbjct: 61 KNSPETLLAY 70
>gnl|CDD|227286 COG4950, COG4950, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 193
Score = 28.6 bits (64), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 83 RAIEKLSAHGLSRDDIVTL 101
A+E+L GL+ DIVTL
Sbjct: 138 EALERLYDVGLTARDIVTL 156
Score = 28.6 bits (64), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 212 RAIEKLSAHGLSRDDIVTL 230
A+E+L GL+ DIVTL
Sbjct: 138 EALERLYDVGLTARDIVTL 156
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,343,616
Number of extensions: 2433002
Number of successful extensions: 2602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2437
Number of HSP's successfully gapped: 152
Length of query: 500
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 399
Effective length of database: 6,457,848
Effective search space: 2576681352
Effective search space used: 2576681352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)