RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9709
(500 letters)
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 482 bits (1242), Expect = e-167
Identities = 146/399 (36%), Positives = 206/399 (51%), Gaps = 62/399 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I ID+ T++ + V S++++ + GW E DP+EI+ + M+ I
Sbjct: 6 ILSIDQSTQSTK-VFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGI 64
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ L + I +GITNQRET ++WD TG+PLYNAIVW DTR + +V + A
Sbjct: 65 KVLKD-KYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSA---K 120
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ + ++ G + YFSA K+ WLIQN +++ I + + G ++TWL++NLT
Sbjct: 121 YNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN- 179
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPT-ILPEIRSSSEI-------------- 379
TDVTNASRT+LM+I++LQWD +CK F + +LPEI+S+
Sbjct: 180 CYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLN 239
Query: 380 ----------------------------YG------------KVHSNNGLVTTVAYQFGP 399
YG V+S GL+TT+ Y+F
Sbjct: 240 IPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFND 299
Query: 400 DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAP 459
+ P YALEGSI AG+ V WL N L+D+ E + EK T V FVPAF GLYAP
Sbjct: 300 NDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAP 358
Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
WR DAR I GMT T + HI+RA LE I FQ +I++
Sbjct: 359 RWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVD 397
Score = 120 bits (303), Expect = 1e-29
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I ID+ T++ + V S++++ + GW E DP+EI+ + M+ I
Sbjct: 6 ILSIDQSTQSTK-VFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGI 64
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ L + I +GITNQRET ++WD TG+PLYNAI
Sbjct: 65 KVLKD-KYTSVIIKCIGITNQRETVIIWDRITGKPLYNAI 103
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 472 bits (1218), Expect = e-164
Identities = 165/399 (41%), Positives = 228/399 (57%), Gaps = 63/399 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
+ ID+GT + R AI+ + E + ++ I P+ GW E +P +I V+ + A+
Sbjct: 4 VLAIDQGTTSSR-AIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLAL 62
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ L+ +DI +GITNQRET VVWD TG+P+YNAIVW DTR IVD++ D
Sbjct: 63 TR---GNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGG---D 116
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT- 333
+ + K I GLP++ YFS K+ W++ NV R ++ LFG DTW++WN+TG T
Sbjct: 117 EGAEKYKSIVGLPLATYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTE 176
Query: 334 --CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK--------- 382
HVTDVTNASRTMLM++D+L W + +P ++LP+IRSSSE+YG
Sbjct: 177 GGVHVTDVTNASRTMLMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPG 236
Query: 383 -------------------------------------------VHSNNGLVTTVAYQFGP 399
V S NGL+TTV Y+ G
Sbjct: 237 VPIAGILGDQQAATFGQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIG- 295
Query: 400 DATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAP 459
DA +YALEGSIAV G+ V+WLRDNL + ++ + E LA KV G YFVPAF GL+AP
Sbjct: 296 DAPAVYALEGSIAVTGSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAP 355
Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
YWR DARG + G+T++ + HI RAALEA FQ+R++++
Sbjct: 356 YWRPDARGALVGLTRYVNRNHIARAALEATAFQSREVVD 394
Score = 114 bits (287), Expect = 2e-27
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
+ ID+GT + R AI+ + E + ++ I P+ GW E +P +I V+ + A+
Sbjct: 4 VLAIDQGTTSSR-AIVFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLAL 62
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ L+ +DI +GITNQRET VVWD TG+P+YNAI
Sbjct: 63 TR---GNLTHEDIAAVGITNQRETAVVWDKTTGKPVYNAI 99
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti
binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 465 bits (1200), Expect = e-161
Identities = 143/397 (36%), Positives = 209/397 (52%), Gaps = 62/397 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
+ ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A
Sbjct: 7 VMAIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 65
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+ D
Sbjct: 66 IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKV---D 119
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT
Sbjct: 120 GHTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQV 179
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
HVTD +NASRTML NI L+WD + +P ++LPE++S+SE+YG
Sbjct: 180 HVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYRFYGSEVP 239
Query: 383 -----------------------------------------VHSNNGLVTTVAYQFGPDA 401
S+N L+TT+ Y +
Sbjct: 240 IAGMAGDQQAALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGI--NG 297
Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
YALEGSI VAG+A++WLRD L +++ ++E LA K +VY VPAF GL APYW
Sbjct: 298 KVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYW 357
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG + G+T+ TTK +RA L+A+ +Q++D+++
Sbjct: 358 DSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVID 394
Score = 114 bits (287), Expect = 2e-27
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
+ ID+GT + R AII +++ S + P+ GW E + EI +VQ+ + A
Sbjct: 7 VMAIDQGTTSSR-AIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 65
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 66 IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 102
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 465 bits (1199), Expect = e-161
Identities = 152/397 (38%), Positives = 209/397 (52%), Gaps = 62/397 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I +D+GT + R A++ + + I P+ GW E DPMEI +T+ +
Sbjct: 5 IVALDQGTTSSR-AVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 63
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
K +S D I +GITNQRETT+VW+ TG+P+YNAIVW R I + + D
Sbjct: 64 AK---ADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKR---D 117
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+DY++ GL + PYFS K+ W++ +V R + LFGTVDTWL+W +T
Sbjct: 118 GLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRV 177
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
HVTD TNASRTML NI +L WD + + +P +LPE+R SSE+YG+
Sbjct: 178 HVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGGTRIP 237
Query: 383 -----------------------------------------VHSNNGLVTTVAYQFGPDA 401
V S NGL+TT+A
Sbjct: 238 ISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGP--TG 295
Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
YALEG++ +AGA+++WLRD + L+++ ++E A KV T VY VPAF GL APYW
Sbjct: 296 EVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYW 355
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
ARG I G+T+ HIIRA LE+I +QTRD+LE
Sbjct: 356 DPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVLE 392
Score = 113 bits (286), Expect = 2e-27
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I +D+GT + R A++ + + I P+ GW E DPMEI +T+ +
Sbjct: 5 IVALDQGTTSSR-AVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 63
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
K +S D I +GITNQRETT+VW+ TG+P+YNAI
Sbjct: 64 AK---ADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI 100
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 465 bits (1200), Expect = e-161
Identities = 158/396 (39%), Positives = 205/396 (51%), Gaps = 61/396 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I ID+GT + R AI+ Q+ + P+ GW E DP EI Q V +T+ AI
Sbjct: 28 ILAIDQGTTSTR-AIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAI 86
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
EK G++ +DI +GITNQRET VVWD TG+P++NAIVW D R D++
Sbjct: 87 EK---SGITANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKK---K 140
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ GL + PYFS KL+WL+ NV + + FGT+DT+L+W LTG C
Sbjct: 141 GLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGEC 200
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
TD TNASRT+L NI WD L + VP +LPE++ + +G
Sbjct: 201 FCTDATNASRTLLYNIAENAWDDELTEVLRVPKEMLPEVKDCAADFGVTDPSLFGAAIPI 260
Query: 383 ----------------------------------------VHSNNGLVTTVAYQFGPDAT 402
V S N L+TT+AY+ D
Sbjct: 261 LGVAGDQQAATIGQACFKPGMLKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRL--DGE 318
Query: 403 PIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWR 462
YALEGSI VAGAAV+WLRD L ++ +T SLAE + +VY VPAF GL AP+W
Sbjct: 319 TTYALEGSIFVAGAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWD 378
Query: 463 KDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
DARG I GMT+ T RAALEA+C+QTRD+LE
Sbjct: 379 PDARGAIFGMTRNTGPAEFARAALEAVCYQTRDLLE 414
Score = 114 bits (287), Expect = 2e-27
Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I ID+GT + R AI+ Q+ + P+ GW E DP EI Q V +T+ AI
Sbjct: 28 ILAIDQGTTSTR-AIVFDGNQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAI 86
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
EK G++ +DI +GITNQRET VVWD TG+P++NAI
Sbjct: 87 EK---SGITANDIAAIGITNQRETVVVWDRETGKPIHNAI 123
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, struct genomics; HET:
MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Length = 501
Score = 465 bits (1198), Expect = e-161
Identities = 151/397 (38%), Positives = 212/397 (53%), Gaps = 62/397 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I ID+GT + R AI+ E + PQ GW E D EI +V M I
Sbjct: 8 ILSIDQGTTSSR-AILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVI 66
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ + + D I +GITNQRETTVVWD +TG P+Y+AIVW + +I ++
Sbjct: 67 NE---NDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQ---Q 120
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ + GL + PYF+ K+ W++ NV R + LFGT+DTWLVW L+G+
Sbjct: 121 GYEQTFRDKTGLLLDPYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKAA 180
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
H+TD +NASRT++ NI L+WD L + VP +LPE+++SSE+YGK
Sbjct: 181 HITDYSNASRTLMFNIHDLEWDDELLELLTVPKNMLPEVKASSEVYGKTIDYHFYGQEVP 240
Query: 383 -----------------------------------------VHSNNGLVTTVAYQFGPDA 401
V S +GL+TT+AY D
Sbjct: 241 IAGVAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGI--DG 298
Query: 402 TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYW 461
YALEGSI V+G+A++WLRD L ++++ ++ES A +V +T VY VPAF GL PYW
Sbjct: 299 KVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYW 358
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
+ARG I G+T+ T K H IRA LE++C+QTRD++E
Sbjct: 359 DSEARGAIFGLTRGTEKEHFIRATLESLCYQTRDVME 395
Score = 113 bits (286), Expect = 2e-27
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I ID+GT + R AI+ E + PQ GW E D EI +V M I
Sbjct: 8 ILSIDQGTTSSR-AILFNQKGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVI 66
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ + + D I +GITNQRETTVVWD +TG P+Y+AI
Sbjct: 67 NE---NDVRADQIAGIGITNQRETTVVWDKHTGRPIYHAI 103
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 460 bits (1187), Expect = e-159
Identities = 149/396 (37%), Positives = 205/396 (51%), Gaps = 62/396 (15%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
+ +D+GT + R AI+ L V + + P+ GW E DP+EI + +
Sbjct: 4 LLALDQGTTSSR-AILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVL 62
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ G +++ LGITNQRETT++WD TG+PL+NAIVW D R + + + A
Sbjct: 63 RR---AGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRA---K 116
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ + GL PYFS KL WL++NV ++ + FGTVDTWL+WNLTG
Sbjct: 117 GLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGKV 176
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK------------ 382
H TD TNASRT+L N+ +L WDP L + +P +LPE+R S +G+
Sbjct: 177 HATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPELLGAPVPI 236
Query: 383 ----------------------------------------VHSNNGLVTTVAYQFGPDAT 402
V S GL+ TVA+ G
Sbjct: 237 RGVLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLG--GR 294
Query: 403 PIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWR 462
YALEGS+ VAGAAV WL++ + L+ E E+LA V TGDVYFVPAF GL APYW
Sbjct: 295 ATYALEGSLFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWD 353
Query: 463 KDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
ARG + G+T+ T++ H+ RAALE + FQ RD++
Sbjct: 354 PYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVL 389
Score = 113 bits (284), Expect = 4e-27
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
+ +D+GT + R AI+ L V + + P+ GW E DP+EI + +
Sbjct: 4 LLALDQGTTSSR-AILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVL 62
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ G +++ LGITNQRETT++WD TG+PL+NAI
Sbjct: 63 RR---AGAEAGEVLALGITNQRETTLLWDRKTGKPLHNAI 99
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL
metabolism, nucleotide-binding, transferase; 2.40A
{Thermococcus kodakarensis}
Length = 497
Score = 450 bits (1159), Expect = e-155
Identities = 149/395 (37%), Positives = 207/395 (52%), Gaps = 64/395 (16%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
+ +DEGT + R AII + P+ GW E +P EI A + AI
Sbjct: 5 VLSLDEGTTSAR-AIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAI 63
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ + + I +G+TNQRETT+VWD G+PLYNAIVW R +V++ + +
Sbjct: 64 QS---ARIEPNQIAAIGVTNQRETTLVWD-KDGKPLYNAIVWQCRRTAEMVEE-IKR--- 115
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ +K GL YFSA KL WL+ NV +R ++ +FGTVDT+L++ LTG
Sbjct: 116 EYGTMIKEKTGLVPDAYFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTGE-- 173
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN-------- 386
HVTD +NASRTML NI L WD L + F +P ++LPE+R SSE+YG
Sbjct: 174 HVTDYSNASRTMLFNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAEIPV 233
Query: 387 -------------------------------------------NGLVTTVAYQFGPDATP 403
+ L+TT+A+ +
Sbjct: 234 SGDAGDQQAALFGQAAFEAGMVKATYGTGSFILVNTDKMVLYSDNLLTTIAWGL--NGRV 291
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRK 463
YALEGSI V GAAV+WLRD + ++ + ETE LA K+ + VYFVPAF GL APYW +
Sbjct: 292 SYALEGSIFVTGAAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPYWDQ 351
Query: 464 DARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
ARG+I G+T+ T + H+ RA LEAI + TRD+++
Sbjct: 352 FARGIIIGITRGTGREHLARATLEAIAYLTRDVVD 386
Score = 108 bits (273), Expect = 1e-25
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
+ +DEGT + R AII + P+ GW E +P EI A + AI
Sbjct: 5 VLSLDEGTTSAR-AIIFDRESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAI 63
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ + + I +G+TNQRETT+VWD G+PLYNAI
Sbjct: 64 QS---ARIEPNQIAAIGVTNQRETTLVWD-KDGKPLYNAI 99
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 296 bits (759), Expect = 7e-95
Identities = 87/398 (21%), Positives = 149/398 (37%), Gaps = 71/398 (17%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+IG +D GT + ++ + + V S S I + G AE+DP I AVQ +
Sbjct: 6 IIG-MDVGTTATK-GVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDL 63
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
+K I + ++Q + + + E L N+I W+D A +IV +
Sbjct: 64 TQK------IDGKIAAISWSSQMHSLIGLGSD-DELLTNSITWADNCAKSIVQDAKNRGF 116
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
+ G+P+ P KL WL + V + + + ++++ LTG+
Sbjct: 117 ---AQQIYRKTGMPMHPMAPIYKLLWLKNKKTEVFSQAQ----KWIGIKEYIIFRLTGK- 168
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK----------- 382
VTD T A+ T ++N+ +L WD L + LP+I +++
Sbjct: 169 -LVTDTTMAAGTGILNLKTLTWDQELLDILKIKKEQLPKIAQPTKVIFPIKTEYVKKLGI 227
Query: 383 ----------------------VHSNNGLVT--------TVAYQFGPD--------ATP- 403
+ S++ + T+ Q D
Sbjct: 228 DSDTKIILGASDGYLSTIGVNAIDSDHCALNVGTSGAIRTIVDQPKIDPSASYFCYPADK 287
Query: 404 -IYALEGSIAVAGAAVKWLRDNLNLMDN-VRETESLAEKVMT-TGDVYFVPAFGGLYAPY 460
Y L G + G W R L D ++ +A+ + ++ F+P GG AP
Sbjct: 288 THYLLGGPVNNGGIVFNWARQTLFDADETPQDFLDVAQTAPAGSRNLIFLPYLGGERAPI 347
Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
W +ARG G+T+ K + RA +E I F D
Sbjct: 348 WDANARGSFVGLTRMHQKPEMARAVIEGIIFNLYDAAS 385
Score = 90.0 bits (224), Expect = 2e-19
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+IG +D GT + ++ + + V S S I + G AE+DP I AVQ +
Sbjct: 6 IIG-MDVGTTATK-GVLYDINGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDL 63
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+K I + ++Q + + + E L N+I
Sbjct: 64 TQK------IDGKIAAISWSSQMHSLIGLGSD-DELLTNSI 97
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 253 bits (649), Expect = 8e-79
Identities = 49/398 (12%), Positives = 117/398 (29%), Gaps = 79/398 (19%)
Query: 158 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 213
+D G + R +++ +E +I + Q G+ D + A++ +++
Sbjct: 9 VDLGASSGR-VMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKV 67
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
+ I ++GI V+ D G+ + + + D+R + ++ Q +
Sbjct: 68 -------CAAGIAIDSIGIDTWGVDFVLLDQQ-GQRVGLPVAYRDSRTNGLMAQAQQQLG 119
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
K + G+ P+ + +L L + + I + + + LTG+
Sbjct: 120 ---KRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAH----ALLMPDYFSYRLTGK- 171
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVH--------- 384
+ TNA+ T L+NI+S WD L + + G
Sbjct: 172 -MNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPV 230
Query: 385 ------------------------------------------SNNGLVTTVAYQFGPDAT 402
++ L + + G +
Sbjct: 231 VAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGR 290
Query: 403 PIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGDVYFV--PAFGGLYAPY 460
Y + +I + L++ +++ + + + + F
Sbjct: 291 --YRVLKNIMGLWLLQRVLQERQI--NDLPALIAATQALPACRFIINPNDDRFINPDEMC 346
Query: 461 WRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILE 498
A + + R +++ D+L
Sbjct: 347 SEIQAACREMAQPIPESDAELARCIFDSLALLYADVLH 384
Score = 67.3 bits (165), Expect = 4e-12
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 29 IDEGTRTVRFAIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRA 84
+D G + R +++ +E +I + Q G+ D + A++ +++
Sbjct: 9 VDLGASSGR-VMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKV 67
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ I ++GI V+ D G+ + +
Sbjct: 68 -------CAAGIAIDSIGIDTWGVDFVLLDQQ-GQRVGLPV 100
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 219 bits (560), Expect = 1e-65
Identities = 81/401 (20%), Positives = 131/401 (32%), Gaps = 69/401 (17%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+IG +D GT + AI+ L V S + SP GWAE+DP + + +
Sbjct: 9 VIG-LDIGTTSTI-AILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAEL 66
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
G S + +T V+ D G L +I SD R + V ++ A+
Sbjct: 67 KTT---AGESDWRPGGICVTGMLPAVVLLDDR-GAVLRPSIQQSDGRCGDEVAELRAEVD 122
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
+ G V+ KL W+ ++ +V AI ++ LTG
Sbjct: 123 SEA---FLARTGNGVTQQLVTAKLRWIERHEPAVFGAIA----TVCGSYDYINMLLTGE- 174
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN------- 386
V D A +++ S + L +PP+ +P + + G V +
Sbjct: 175 -RVVDRNWALEGGFIDLASGTVEADLVALAHIPPSAVPPAHPTHRVLGAVTAEAAALTGL 233
Query: 387 ----------------------------------NGLVTTVAYQFGPD--------ATP- 403
G + + D P
Sbjct: 234 PTGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASATAKSDPRLYLDYHLVPG 293
Query: 404 IYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTT----GDVYFVPAFGGLYAP 459
+YA G +A G+A+ WL L L + +P F G P
Sbjct: 294 LYAPNGCMAATGSALNWLAKLLAPEAGEAAHAQLDALAAEVPAGADGLVCLPYFLGEKTP 353
Query: 460 YWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
A G G++ T+GH+ RA LEA+ R + +
Sbjct: 354 IHDPFASGTFTGLSLSHTRGHLWRALLEAVALAFRHHVAVL 394
Score = 75.3 bits (186), Expect = 1e-14
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+IG +D GT + AI+ L V S + SP GWAE+DP + + +
Sbjct: 9 VIG-LDIGTTSTI-AILVRLPDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAEL 66
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G S + +T V+ D G L +I
Sbjct: 67 KTT---AGESDWRPGGICVTGMLPAVVLLDDR-GAVLRPSI 103
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 208 bits (532), Expect = 1e-61
Identities = 73/407 (17%), Positives = 125/407 (30%), Gaps = 75/407 (18%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+ D GT V+ A ++ S+ + T G EQD + AVQ
Sbjct: 7 IAT-FDIGTTEVK-AALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQR----I 60
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
G+ + + ++ Q + + D + EPL+ A+++SD R +++ A+
Sbjct: 61 ASSWWQSGVDARRVSAIVLSGQMQNFLPLDQD-HEPLHRAVLYSDKRPLKEAEEINARHG 119
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
+ L P++ KL + + + R + ++V LTGR
Sbjct: 120 ADN---LWSALENPMTAASILPKLVFWRASFPQAFGRL---RHVVLGAKDYVVLRLTGR- 172
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGK----------- 382
H TD TNAS T L W L + ++P + E G
Sbjct: 173 -HATDRTNASTTGLYRPKDDAWHVELLADYGFSLDLMPRLLEPGEQVGGVSALAARQTGF 231
Query: 383 ----------------------VHSNNGLVT----------TVAYQFGPD---------- 400
+ + + T G
Sbjct: 232 VSGTPVLCGLGDAGAATLGVGVLDDEDAYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAG 291
Query: 401 ATP-IYALEGSIAVAGAAVKWLRDNL--NLMDNVRETESLAEKVMTT----GDVYFVPAF 453
+ AG ++W + ++ E +A + + FVP
Sbjct: 292 IIAGKTLQVAPVLNAGNILQWALTLVGHRPGEDCAEYFHMAAAEVQGVTVPDGLLFVPYL 351
Query: 454 GGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
P RG + G+T TT+ I+ A LE R EL
Sbjct: 352 HAERCPVELPAPRGALLGVTGATTRAQILLAVLEGAALSLRWCAELL 398
Score = 70.8 bits (174), Expect = 3e-13
Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+ D GT V+ A ++ S+ + T G EQD + AVQ
Sbjct: 7 IAT-FDIGTTEVK-AALADRDGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQR----I 60
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
G+ + + ++ Q + + D + EPL+ A+
Sbjct: 61 ASSWWQSGVDARRVSAIVLSGQMQNFLPLDQD-HEPLHRAV 100
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 206 bits (527), Expect = 4e-61
Identities = 81/399 (20%), Positives = 144/399 (36%), Gaps = 72/399 (18%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
IG ID GT V+ I+ E V + + ++ P W+EQDP + QA M
Sbjct: 2 YIG-IDLGTSGVK-VILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
++ S D+ LGI Q + D L AI+W+D R + A+ P
Sbjct: 60 GDQHSL-----QDVKALGIAGQMHGATLLDAQ-QRVLRPAILWNDGRCAQECTLLEARVP 113
Query: 274 DQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRT 333
I G + P F+A KL W+ ++ + R I +L +TG
Sbjct: 114 QSRV-----ITGNLMMPGFTAPKLLWVQRHEPEIFRQID----KVLLPKDYLRLRMTGE- 163
Query: 334 CHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSN------- 386
+D+++A+ TM +++ W ++ + + +P + SEI G +
Sbjct: 164 -FASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGM 222
Query: 387 ---------------------------------NGLVTTVAYQFGPDATPI--------- 404
+G+ V+ F
Sbjct: 223 ATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALP 282
Query: 405 --YALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKVMTTGD-VYFVPAFGGLYAPYW 461
+ L + A + + W + NV + A++ + + V+F+P G P+
Sbjct: 283 QRWHLMSVMLSAASCLDWAAKLTG-LSNVPALIAAAQQADESAEPVWFLPYLSGERTPHN 341
Query: 462 RKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
A+GV G+T + RA LE + + D +++
Sbjct: 342 NPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVV 380
Score = 66.5 bits (163), Expect = 6e-12
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
IG ID GT V+ I+ E V + + ++ P W+EQDP + QA M
Sbjct: 2 YIG-IDLGTSGVK-VILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKAL 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
++ S D+ LGI Q + D L AI
Sbjct: 60 GDQHSL-----QDVKALGIAGQMHGATLLDAQ-QRVLRPAI 94
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 150 bits (380), Expect = 6e-40
Identities = 74/434 (17%), Positives = 129/434 (29%), Gaps = 111/434 (25%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
+ G +D T++ + + A T E V + DP A Q ++A
Sbjct: 7 VAG-VDTSTQSCKVRVTDAETGELVRFGQ------AKHPNGTSVDPSYWWSAFQEAAEQA 59
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFP 273
DD+ L + Q+ V+ D G + +A++W+DT + ++ K
Sbjct: 60 GGL--------DDVSALAVGGQQHGMVILDNQ-GNVIRDAMLWNDTSSAPQAAALIEKLG 110
Query: 274 DQDKDYLKP-------------ICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGT 320
+P G ++ K++W+ +N + I +
Sbjct: 111 AAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVAENEPENVKKI---AAICLP 167
Query: 321 VDTWLVWNLTGRTCH-----------VTDVTNASRTMLMNIDSLQWDPLLCKYFAV---- 365
D WL W + G TD ++AS T+ + S ++ L
Sbjct: 168 HD-WLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDAASNEYRRDLIAMVLEAAEG 226
Query: 366 --------PPTILPEIRSSSEIYGKVHS-------------------NN----------- 387
+LP + + +N
Sbjct: 227 AKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCLLAPGGGDNAMASLGLGMAV 286
Query: 388 ----------GLVTTVAYQFGPD----------ATPIYALEGSIAVAGAAVKWLRDNLNL 427
G+ ++ D T Y + R L +
Sbjct: 287 GDVSISLGTSGVAAAISENPTYDLTGAVSGFADCTGHYLPLACTINGSRILDAGRAALGV 346
Query: 428 MDNVRETESLAEKVMTTGD-VYFVPAFGGLYAPYWRKDARGVICGMTQF-TTKGHIIRAA 485
+ E LA + + VP F G P R +A GMT TT+ ++ RA
Sbjct: 347 --DYDELAKLAFASKPGANGITLVPYFDGERTP-NRPNATATFSGMTLANTTRENLARAF 403
Query: 486 LEAICFQTRDILEL 499
+E + RD LEL
Sbjct: 404 VEGLLCSQRDCLEL 417
Score = 54.3 bits (131), Expect = 5e-08
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
+ G +D T++ + + A T E V + DP A Q ++A
Sbjct: 7 VAG-VDTSTQSCKVRVTDAETGELVRFGQ------AKHPNGTSVDPSYWWSAFQEAAEQA 59
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
DD+ L + Q+ V+ D G + +A+
Sbjct: 60 GGL--------DDVSALAVGGQQHGMVILDNQ-GNVIRDAM 91
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 130 bits (328), Expect = 9e-33
Identities = 62/277 (22%), Positives = 97/277 (35%), Gaps = 35/277 (12%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 213
IG +D GT + R A + L V S +I+ P+ + EQ I QAV + A
Sbjct: 7 FIG-VDVGTGSAR-AGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDA 64
Query: 214 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL---------YNAIVWSDTRADNI 264
+ + ++ + LG + VV D G PL N IVW D RA
Sbjct: 65 VNQ---ADINPIQVKGLGFDATC-SLVVLDKE-GNPLTVSPSGRNEQNVIVWMDHRAITQ 119
Query: 265 VDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTW 324
+++ + K + G +SP KL WL Q+ N + +
Sbjct: 120 AERI-----NATKHPVLEFVGGVISPEMQTPKLLWLKQH----MPNTWSNVGHLFDLPDF 170
Query: 325 LVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTI---LPEIRSSSEIYG 381
L W T + + +WDP K + + +I ++ + G
Sbjct: 171 LTWRATKD--ETRSLCSTVCKWTYLGHEDRWDPSYFKLVGLADLLDNNAAKIGATVKPMG 228
Query: 382 KVHSNNGLVTTVAYQFG-PDATPIYALEGSI-AVAGA 416
+GL A + G T + I A AG
Sbjct: 229 APLG-HGLSQRAASEMGLIPGTAVSV--SIIDAHAGT 262
Score = 75.4 bits (186), Expect = 1e-14
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 23/117 (19%)
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRET---------ESLAEKVMT-----------T 444
+ EG + GA + + + + E E+L + T
Sbjct: 318 WLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLT 377
Query: 445 GDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHII---RAALEAICFQTRDILE 498
D++ +P F G +P + G+I G+ TT + A ++A+ TR I+E
Sbjct: 378 NDIHMLPYFHGNRSPRANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIE 434
Score = 64.7 bits (158), Expect = 3e-11
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRA 84
IG +D GT + R A + L V S +I+ P+ + EQ I QAV + A
Sbjct: 7 FIG-VDVGTGSAR-AGVFDLQGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDA 64
Query: 85 IEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 121
+ + ++ + LG + VV D G PL
Sbjct: 65 VNQ---ADINPIQVKGLGFDATC-SLVVLDKE-GNPL 96
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 125 bits (315), Expect = 5e-31
Identities = 47/287 (16%), Positives = 97/287 (33%), Gaps = 38/287 (13%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDI-----------STISPQEGWAEQDPMEI 202
IG +D GT + R +I +E+ H + I WA Q P++
Sbjct: 7 TIG-VDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDY 65
Query: 203 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL-----------Y 251
++ + T++ +++ G+ DD++ +G+ T + D G+PL
Sbjct: 66 VEVLTTSVPAVMKE---SGVDADDVIGIGVDFTACTMLPVD-EEGQPLCLLAQYKDNPHS 121
Query: 252 NAIVWSDTRADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAI 311
+W A + + + + + +L G +S + K+ ++ +
Sbjct: 122 WVKLWKHHAAQDKANAINEMAEKRGEAFLP-RYGGKISSEWMIAKVWQILDE----AEDV 176
Query: 312 KENRCLFGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILP 371
F W+V +TG+ V + A + + K L
Sbjct: 177 YNRTDQFLEATDWIVSQMTGK--IVKNSCTAGYKAIWHKREGYPSNEFFKALDPRLEHLT 234
Query: 372 EIRSSSEIYGKVHSNNGLVTTVAYQFG-PDATPIYALEGSI-AVAGA 416
+ +I GL+ +A + G + G++ A A
Sbjct: 235 TTKLRGDIVPLGERAGGLLPEMAEKMGLNPGIAVAV--GNVDAHAAV 279
Score = 79.3 bits (196), Expect = 6e-16
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 12/108 (11%)
Query: 405 YALEGSIAVAGAAVKWLRDNLNLMDNVRETES-----------LAEKVMT-TGDVYFVPA 452
E + G W + E + A ++ + +
Sbjct: 326 LGYEAGQSAVGDIFAWFVKHGVSAATFDEAQEKGVNVHALLEEKASQLRPGESGLLALDW 385
Query: 453 FGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDILELY 500
+ G + + G++ G T T I RA LEA F TR I++ +
Sbjct: 386 WNGNRSILVDTELSGMLLGYTLQTKPEEIYRALLEATAFGTRAIVDAF 433
Score = 59.7 bits (145), Expect = 1e-09
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSHSMDI-----------STISPQEGWAEQDPMEI 73
IG +D GT + R +I +E+ H + I WA Q P++
Sbjct: 7 TIG-VDYGTESGRAVLIDLSNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDY 65
Query: 74 LQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAID 126
++ + T++ +++ G+ DD++ +G+ T + D G+PL
Sbjct: 66 VEVLTTSVPAVMKE---SGVDADDVIGIGVDFTACTMLPVD-EEGQPLCLLAQ 114
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 113 bits (285), Expect = 2e-27
Identities = 35/266 (13%), Positives = 73/266 (27%), Gaps = 40/266 (15%)
Query: 157 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 216
VID G + ++ + S +G D + + + + R +
Sbjct: 10 VIDLGKTLSKVSLWDL-DGRMLDRQVRP-SIPLEIDGIRRLDAPDTGRWLLDVLSRYADH 67
Query: 217 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPDQD 276
+ T+ G + + + + + ++ ++
Sbjct: 68 ---------PVTTIVPVGHGAGIAALT--DGRLAFPPLDYEQSIPEAVMADYRSQRDPFA 116
Query: 277 KDYLKPICGLPVSPYF--SALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
G P P +L WL Q V + W LTGR
Sbjct: 117 ------RTGSPALPDGLNIGSQLWWLDQLHPDVMANAT-----LLPWAQYWAWFLTGR-- 163
Query: 335 HVTDVTNAS-RTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTV 393
V++VT+ + L + + P+ + I + + G + +
Sbjct: 164 AVSEVTSLGCHSDLWDPQDGDFSPMAKRLG--WAARFAPIVRAGDTVGALLPA------I 215
Query: 394 AYQFG-PDATPIYALEGSIAVAGAAV 418
A + G + A G A +
Sbjct: 216 AERTGLSPDVQVLA--GLHDSNAALL 239
Score = 49.4 bits (118), Expect = 2e-06
Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 13/99 (13%)
Query: 28 VIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK 87
VID G + ++ + S +G D + + + + R +
Sbjct: 10 VIDLGKTLSKVSLWDL-DGRMLDRQVRP-SIPLEIDGIRRLDAPDTGRWLLDVLSRYADH 67
Query: 88 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAID 126
+ T+ G + +D
Sbjct: 68 ---------PVTTIVPVGHGAGIAALT--DGRLAFPPLD 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.5 bits (172), Expect = 7e-13
Identities = 70/446 (15%), Positives = 133/446 (29%), Gaps = 175/446 (39%)
Query: 8 TPPE------PSSNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISP 61
TP + P S PLIGVI L V + +
Sbjct: 225 TPDKDYLLSIPIS--------CPLIGVI-------------QLAHYVVTAKLL------- 256
Query: 62 QEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 121
G+ + L+ T + + ++A ++ D + E
Sbjct: 257 --GFTPGELRSYLKGA-TGHSQGL--VTAVAIAETD-------------------SWESF 292
Query: 122 YNAIDKMPSLVYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSH 181
+ ++ K ++++ IGV + E+ + +
Sbjct: 293 FVSVRKAITVLF--------------------FIGV--RCYEAYPNTSLPPSILEDSLEN 330
Query: 182 SMDISTISPQEGWAEQDPMEILQAV----QTTMDRAIEKLSAHGLSRDDIVTLGITNQRE 237
+ + + PM L ++ Q + + K ++H L V + + N +
Sbjct: 331 NEGVPS-----------PM--L-SISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAK 375
Query: 238 TTVVWDLNTGEP--LYNAIVW-SDTRADNIVDQVLAKFPDQDKDYLKPICG---LPVS-P 290
VV +G P LY + +A + +DQ F ++ K LPV+ P
Sbjct: 376 NLVV----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-----KLKFSNRFLPVASP 426
Query: 291 YFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWL---VWN-LTGRTCHVTDVTNASRTM 346
+ S L L+ + + + +N F D + V++ G D+ S ++
Sbjct: 427 FHSHL----LVPASDLINKDLVKNNVSFNAKD--IQIPVYDTFDGS-----DLRVLSGSI 475
Query: 347 LMNI------DSLQWDPLLCKYFAVPPT-ILPEIRSSSEIYGKVHSNNGLVTTVAYQFGP 399
I ++W+ T IL FGP
Sbjct: 476 SERIVDCIIRLPVKWETTT----QFKATHIL-------------------------DFGP 506
Query: 400 DATP-IYAL-----EGS---IAVAGA 416
+ L +G+ + VAG
Sbjct: 507 GGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 30.4 bits (68), Expect = 1.8
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 428 MDNVRETESLAEKVMTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFT-TKGHIIRAAL 486
MD + +T A+ V D +F +G + + F KG IR
Sbjct: 1633 MD-LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT---IHFGGEKGKRIRENY 1688
Query: 487 EAICFQT 493
A+ F+T
Sbjct: 1689 SAMIFET 1695
Score = 28.5 bits (63), Expect = 7.3
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 28/93 (30%)
Query: 383 VHSNNGLVTTVAYQFGPDA-TPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETES-LAEK 440
+H+ +A + + T + + I A + + +++ S L
Sbjct: 101 IHA-------LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD-----KKSNSALFRA 148
Query: 441 VMTTGDVYFVPAFGG-------------LYAPY 460
V G+ V FGG LY Y
Sbjct: 149 V-GEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 4e-10
Identities = 75/434 (17%), Positives = 135/434 (31%), Gaps = 121/434 (27%)
Query: 52 HSMDISTISPQEGWAEQDPMEI-LQAVQTTMD-RAIEKLSAHGLSR---DDIVTLGITNQ 106
H MD T Q + +D + + A D + ++ + LS+ D I+
Sbjct: 5 HHMDFETGEHQYQY--KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 107 RETTVVWDL-NTGEP----------------LYNAI---DKMPSLV---YNTPPEPSSNT 143
+ W L + E L + I + PS++ Y + N
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 144 NNNSIQTQVPLIGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEIL 203
N + V + +R A++ + V+ + G + +
Sbjct: 123 NQVFAKYNVS----RLQPYLKLRQALLELRPAKNVLIDGV--------LGSGKT----WV 166
Query: 204 QAVQTTMDRAIEKLSAHGLSRDDI--VTLGITNQRETTVVWDLNTGEPLYNAIVWSDT-R 260
A+ + ++ I + L N TV+ L L I + T R
Sbjct: 167 -ALDVCLSYKVQCKMDFK-----IFWLNLKNCN-SPETVLEMLQK---LLYQIDPNWTSR 216
Query: 261 ADNIVDQVLAKFPDQDKDYLKPICGLPVSPYFSALKLSWLI-QNVSSVRRAIK--ENRCL 317
+D+ + L + L+ + L PY + L L+ NV + +A C
Sbjct: 217 SDHSSNIKLRI--HSIQAELRRL--LKSKPYENCL----LVLLNVQN-AKAWNAFNLSC- 266
Query: 318 FGTVDTWLVWNLTGRTCHVTDVTNASRTMLMNIDSLQW-------DPLLCKYFAVPPTIL 370
L+ T R VTD +A+ T +++D LL KY P L
Sbjct: 267 -----KILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 371 PEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDN 430
P +V + N +++ + +RD L DN
Sbjct: 319 PR---------EVLTTNPRR--------------------LSIIAES---IRDGLATWDN 346
Query: 431 VRETESLAEKVMTT 444
+ +K+ T
Sbjct: 347 WKHVNC--DKLTTI 358
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.033
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 17/42 (40%)
Query: 370 LPEIRSSSEIYGKVHSNNGLVTTVAYQFGPDATPIYALEGSI 411
L ++++S ++Y D+ P A++ ++
Sbjct: 22 LKKLQASLKLYA-----------------DDSAPALAIKATM 46
Score = 28.0 bits (61), Expect = 5.4
Identities = 7/18 (38%), Positives = 8/18 (44%), Gaps = 1/18 (5%)
Query: 121 LYNAIDKMPSLVYNTPPE 138
LY A D P+L E
Sbjct: 31 LY-ADDSAPALAIKATME 47
>2qlk_A Fiber, PIV; fibre, CD46-bindning, viral protein; 2.02A {Human
adenovirus 35} PDB: 3bq4_A 3l88_A 3l89_A*
Length = 213
Score = 27.8 bits (61), Expect = 6.3
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 116 NTGEPLYNAIDKMPSL-VYNTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAI 169
T E + ++ MPS Y P ++ + N I + D + +I
Sbjct: 112 ATSETVASSKAFMPSTTAY--PFNTTTRDSENYIHGICYYMTSYDRSLFPLNISI 164
>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase;
structural genomics, csgid; 1.70A {Bacillus anthracis}
PDB: 3cj8_A*
Length = 240
Score = 27.9 bits (62), Expect = 8.0
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 8/107 (7%)
Query: 66 AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
D EI+ +Q + + K+ G L ET + L+
Sbjct: 2 KMMDANEIISFIQKSEKKTPVKVYIKG-------DLKEVTFPETVQAFVNKKSGVLFGEW 54
Query: 126 DKMPSLVY-NTPPEPSSNTNNNSIQTQVPLIGVIDEGTRTVRFAIIS 171
++ +++ N+ N+ + +P++ + R AII
Sbjct: 55 SEIKTILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIR 101
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold
complementation; 1.78A {Salmonella typhimurium} SCOP:
b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A
2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Length = 137
Score = 27.1 bits (59), Expect = 8.5
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 53 SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE--TT 110
S+DI SPQ+ P+ L+A + I KL + + + GI+N T
Sbjct: 5 SVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTG 64
Query: 111 VVWDL---NTGEPL 121
W + NTG+ +
Sbjct: 65 TAWRVAGKNTGKEI 78
Score = 27.1 bits (59), Expect = 8.5
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 182 SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE--TT 239
S+DI SPQ+ P+ L+A + I KL + + + GI+N T
Sbjct: 5 SVDIVFSSPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTG 64
Query: 240 VVWDL---NTGEPL 250
W + NTG+ +
Sbjct: 65 TAWRVAGKNTGKEI 78
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4)
(RNAse HII), structur genomics, joint center for
structural genomics; 1.74A {Thermotoga maritima} SCOP:
c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Length = 250
Score = 27.6 bits (62), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 56 ISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLS 89
I SP+E D I A + M+RA+E LS
Sbjct: 81 IGIASPEE----IDLYNIFNATKLAMNRALENLS 110
Score = 27.6 bits (62), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 185 ISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLS 218
I SP+E D I A + M+RA+E LS
Sbjct: 81 IGIASPEE----IDLYNIFNATKLAMNRALENLS 110
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma
synoviae} PDB: 3msr_A*
Length = 363
Score = 27.8 bits (61), Expect = 9.7
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 25 LIGVIDEGTRTVRFAIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTM 81
+ ++ I L + + H S+D I Q + + +
Sbjct: 241 GPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRILYQRNYGLTKGKQTFG-LAYLF 299
Query: 82 DRAIEKLSAHGLSRDDIVTLGITN 105
DR + L G+S++ I + + N
Sbjct: 300 DRFLPLLKQVGVSKEAIFDILVNN 323
Score = 27.8 bits (61), Expect = 9.7
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 154 LIGVIDEGTRTVRFAIISALTQEEVVSH---SMDISTISPQEGWAEQDPMEILQAVQTTM 210
+ ++ I L + + H S+D I Q + + +
Sbjct: 241 GPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRILYQRNYGLTKGKQTFG-LAYLF 299
Query: 211 DRAIEKLSAHGLSRDDIVTLGITN 234
DR + L G+S++ I + + N
Sbjct: 300 DRFLPLLKQVGVSKEAIFDILVNN 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,608,971
Number of extensions: 459564
Number of successful extensions: 1807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1711
Number of HSP's successfully gapped: 71
Length of query: 500
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 402
Effective length of database: 3,965,535
Effective search space: 1594145070
Effective search space used: 1594145070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)