RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9709
(500 letters)
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 197 bits (501), Expect = 2e-60
Identities = 93/239 (38%), Positives = 134/239 (56%), Gaps = 7/239 (2%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
I +D+GT + R ++ + + I P+ GW E DPMEI +T+ +
Sbjct: 5 IVALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 63
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
K +S D I +GITNQRETT+VW+ TG+P+YNAIVW R I + + +
Sbjct: 64 AK---ADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE 120
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
DY++ GL + PYFS K+ W++ +V R + LFGTVDTWL+W +T
Sbjct: 121 ---DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRV 177
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTV 393
HVTD TNASRTML NI +L WD + + +P +LPE+R SSE+YG+ + + T +
Sbjct: 178 HVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGGTRI 236
Score = 85.2 bits (210), Expect = 2e-19
Identities = 38/100 (38%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
I +D+GT + R ++ + + I P+ GW E DPMEI +T+ +
Sbjct: 5 IVALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVL 63
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
K +S D I +GITNQRETT+VW+ TG+P+YNAI
Sbjct: 64 AK---ADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI 100
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 189 bits (481), Expect = 1e-57
Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 7/239 (2%)
Query: 155 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 214
+ ID+GT + R I +++ S + P+ GW E + EI +VQ+ + A
Sbjct: 3 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 61
Query: 215 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAKFPD 274
+ G+ + I +GITNQRETTVVWD TG+P+ NAIVW ++ I DQ+
Sbjct: 62 IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQLKVDG-- 116
Query: 275 QDKDYLKPICGLPVSPYFSALKLSWLIQNVSSVRRAIKENRCLFGTVDTWLVWNLTGRTC 334
+ + GL + YFSA K+ WL+ N+ + LFGT+D+WLVW LT
Sbjct: 117 -HTEMIHEKTGLVIDAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLTDGQV 175
Query: 335 HVTDVTNASRTMLMNIDSLQWDPLLCKYFAVPPTILPEIRSSSEIYGKVHSNNGLVTTV 393
HVTD +NASRTML NI L+WD + +P ++LPE++S+SE+YG S + + V
Sbjct: 176 HVTDYSNASRTMLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHTRSYHFYGSEV 234
Score = 79.0 bits (194), Expect = 3e-17
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 26 IGVIDEGTRTVRFAIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAI 85
+ ID+GT + R I +++ S + P+ GW E + EI +VQ+ + A
Sbjct: 3 VMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAF 61
Query: 86 EKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 125
+ G+ + I +GITNQRETTVVWD TG+P+ NAI
Sbjct: 62 IE---SGIRPEAIAGIGITNQRETTVVWDKTTGQPIANAI 98
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 235
Score = 85.3 bits (210), Expect = 2e-19
Identities = 52/115 (45%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 382 KVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKV 441
S+N L+TT+ Y + YALEGSI VAG+A++WLRD L +++ ++E LA K
Sbjct: 24 PQLSDNDLLTTIGYGI--NGKVYYALEGSIFVAGSAIQWLRDGLRMIETSPQSEELAAKA 81
Query: 442 MTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDI 496
+VY VPAF GL APYW +ARG + G+T+ TTK +RA L+A+ +Q++D+
Sbjct: 82 KGDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDV 136
>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 81.5 bits (200), Expect = 4e-18
Identities = 58/116 (50%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 382 KVHSNNGLVTTVAYQFGPDATPIYALEGSIAVAGAAVKWLRDNLNLMDNVRETESLAEKV 441
V S NGL+TT+A P YALEG++ +AGA+++WLRD + L+++ ++E A KV
Sbjct: 26 AVKSENGLLTTIACG--PTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKV 83
Query: 442 MTTGDVYFVPAFGGLYAPYWRKDARGVICGMTQFTTKGHIIRAALEAICFQTRDIL 497
T VY VPAF GL APYW ARG I G+T+ HIIRA LE+I +QTRD+L
Sbjct: 84 QNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDVL 139
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610
{Pyrococcus furiosus [TaxId: 2261]}
Length = 105
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 32 GTRTVRFAIISALTQEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 88
G+ T R II L + + S I + + +++ +E L+ + R L
Sbjct: 8 GSATRREKIIELLLEGDYSPSELARILDMRGKG--SKKVILEDLKVISKIAKREGMVL 63
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 161 GTRTVRFAIISALTQEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKL 217
G+ T R II L + + S I + + +++ +E L+ + R L
Sbjct: 8 GSATRREKIIELLLEGDYSPSELARILDMRGKG--SKKVILEDLKVISKIAKREGMVL 63
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 28.8 bits (63), Expect = 1.3
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 65 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 121
W + A + +E L + +S DD VV D TG
Sbjct: 252 WVYDLKSKQRVARWDLAQQKVEPLVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQ 308
Score = 28.8 bits (63), Expect = 1.3
Identities = 12/57 (21%), Positives = 17/57 (29%)
Query: 194 WAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 250
W + A + +E L + +S DD VV D TG
Sbjct: 252 WVYDLKSKQRVARWDLAQQKVEPLVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQ 308
>d1k1xa1 a.8.3.2 (A:311-384) 4-alpha-glucanotransferase, domain 2
{Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 74
Score = 26.3 bits (58), Expect = 1.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 446 DVYFVPAFGGLYAPYWRKDA 465
D Y+ FGG+Y P+ R+
Sbjct: 44 DAYWHGVFGGIYLPHLRRTV 63
>d2c5wb1 e.3.1.1 (B:266-650) Penicillin-binding protein 1a,
transpeptidase domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 385
Score = 27.4 bits (59), Expect = 4.0
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 206 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWS 257
V T +D+ +K + D+ V + + + D++ G+ +
Sbjct: 33 VYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARH 84
Score = 27.0 bits (58), Expect = 6.6
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 77 VQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 121
V T +D+ +K + D+ V + + + D++ G+ +
Sbjct: 33 VYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVI 77
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 27.2 bits (60), Expect = 4.9
Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 184 DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 243
++ I Q E D + L +G+ R T G + + ++
Sbjct: 210 SLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDR 269
Query: 244 LNT--GEPLYNA--IVWSDTRADNIVDQVLAKFPDQDK 277
LN Y +V T DN +FP++D
Sbjct: 270 LNEAVKYTGYTGGDVVNHGTEQDN------EEFPEKDN 301
>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella
typhimurium [TaxId: 90371]}
Length = 189
Score = 26.8 bits (59), Expect = 5.2
Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 20/136 (14%)
Query: 153 PLIGVIDEGTRTVRFAIISALTQEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMD 211
P++ VI+ G+ +++F+++ T + +++ D ++T + P+ + +
Sbjct: 2 PVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAFLSINGDKPINLAHSNYEDAL 61
Query: 212 RAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIVWSDTRADNIVDQVLAK 271
+AI D + +G + G L+ V D+++
Sbjct: 62 KAIAFELEKRDLTDSVALIGH------RIAH----GGELFTQSVIIT-------DEIIDN 104
Query: 272 FPDQDKDYLKPICGLP 287
+ L P+
Sbjct: 105 I--RRVSPLAPLHNYA 118
>d2o39a1 b.21.1.1 (A:129-325) Adenovirus fiber protein "knob" domain
{Human adenovirus type 11P [TaxId: 343462]}
Length = 197
Score = 26.0 bits (57), Expect = 8.9
Identities = 10/44 (22%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 114 DLNTGEPLYNAIDKMPSL-VYNTPPEPSSNTNNNSIQTQVPLIG 156
+ NA MPS Y P +S N I
Sbjct: 94 QNMATGAITNAKGFMPSTTAY--PFNDNSREKENYIYGTCYYTA 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,825,056
Number of extensions: 83576
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 21
Length of query: 500
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,185,626
Effective search space: 487292286
Effective search space used: 487292286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)