BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9711
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase
Length = 304
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 113/195 (57%), Gaps = 4/195 (2%)
Query: 8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
T E+L+++S +RQ K ++AG+ CEST+AT+++T +++ P Y++ +
Sbjct: 62 TSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 121
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
M+ + H+ VAD SPIPV++Y+ T +D+ VD +V L+ H NI G+KD+ D +
Sbjct: 122 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMKDSGGDVTR 181
Query: 124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
+ + ++T+ +F V GG+ AL+ VLG +C+L L G+WE+
Sbjct: 182 IGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWED 241
Query: 184 AMKLQHRLVKPDVTL 198
A KLQHRL++P+ +
Sbjct: 242 AQKLQHRLIEPNAAV 256
>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase Bound To Pyruvate
Length = 307
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 112/195 (57%), Gaps = 4/195 (2%)
Query: 8 TEEEKLKIISTLRQETKKT--IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
T E+L+++S +RQ K ++AG+ CEST+AT+++T +++ P Y++ +
Sbjct: 65 TSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGR 124
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIK 123
M+ + H+ VAD SPIPV++Y+ T +D+ VD +V L+ H NI G+ D+ D +
Sbjct: 125 MSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSGGDVTR 184
Query: 124 LANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEE 183
+ + ++T+ +F V GG+ AL+ VLG +C+L L G+WE+
Sbjct: 185 IGLIVHKTRKQDFQVLAGSAGFLMASYALGAVGGVCALANVLGAQVCQLERLCCTGQWED 244
Query: 184 AMKLQHRLVKPDVTL 198
A KLQHRL++P+ +
Sbjct: 245 AQKLQHRLIEPNAAV 259
>pdb|1XKY|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XKY|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis At 1.94a Resolution.
pdb|1XL9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis.
pdb|1XL9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase Dapa-2
(Ba3935) From Bacillus Anthracis
Length = 301
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 107/192 (55%), Gaps = 11/192 (5%)
Query: 8 TEEEKLK----IISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQ 63
T EEK+ ++S + + + +IAGT +T A+IDLT+ +++ PYY
Sbjct: 63 TSEEKVALYRHVVSVV--DKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY-- 118
Query: 64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DN 121
K +++ +Y+HF ++A+++P+PV++YN + + ISVDT+V+L+ ENI +KD D
Sbjct: 119 NKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDV 178
Query: 122 IKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKW 181
+ + + +T D +F+V+ G ++ S V+G + E+ +AG++
Sbjct: 179 LTMTEIIEKTAD-DFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGEF 237
Query: 182 EEAMKLQHRLVK 193
++A KL LV+
Sbjct: 238 KKAQKLHQLLVR 249
>pdb|3HIJ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
pdb|3HIJ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bacillus Anthracis In Complex With Its Substrate,
Pyruvate
Length = 292
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 106/192 (55%), Gaps = 11/192 (5%)
Query: 8 TEEEKLK----IISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQ 63
T EEK+ ++S + + + +IAGT +T A+IDLT+ +++ PYY
Sbjct: 54 TSEEKVALYRHVVSVV--DKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY-- 109
Query: 64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DN 121
K +++ +Y+HF ++A+++P+PV++YN + + ISVDT+V+L+ ENI + D D
Sbjct: 110 NKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIXDAGGDV 169
Query: 122 IKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKW 181
+ + + +T D +F+V+ G ++ S V+G + E+ +AG++
Sbjct: 170 LTMTEIIEKTAD-DFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGEF 228
Query: 182 EEAMKLQHRLVK 193
++A KL LV+
Sbjct: 229 KKAQKLHQLLVR 240
>pdb|3QFE|A Chain A, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
pdb|3QFE|B Chain B, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
Length = 318
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 7/195 (3%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+ +F T EE+ ++I+T R+ I+AG STR ++ L+L P
Sbjct: 56 AEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPP 115
Query: 60 YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN-IDISVDTLVKLAH-HENIRGVK 117
YF K T +I F V+ SP+PV+IYN V N ID+ D + +A + N+ GVK
Sbjct: 116 AYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVK 175
Query: 118 DT--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDL 175
T K+ +A FSVF AG I A + V + ++Y+L
Sbjct: 176 LTCASVGKITRLAATLPPAAFSVFGGQSDFLIGGLSVGSAGCIAAFANVFPKTVSKIYEL 235
Query: 176 AKAGKWEEAMKLQHR 190
KAGK ++AM+L HR
Sbjct: 236 YKAGKVDQAMEL-HR 249
>pdb|3PUD|A Chain A, Crystal Structure Of Dhydrodipicolinate Synthase From
Acinetobacter Baumannii At 2.8a Resolution
pdb|3PUD|B Chain B, Crystal Structure Of Dhydrodipicolinate Synthase From
Acinetobacter Baumannii At 2.8a Resolution
pdb|3PUE|A Chain A, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.6a Resolution
pdb|3PUE|B Chain B, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.6a Resolution
pdb|3PUL|A Chain A, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.3a Resolution
pdb|3PUL|B Chain B, Crystal Structure Of The Complex Of Dhydrodipicolinate
Synthase From Acinetobacter Baumannii With Lysine At
2.3a Resolution
pdb|3RK8|A Chain A, Crystal Structure Of The Chloride Inhibited
Dihydrodipicolinate Synthase From Acinetobacter
Baumannii Complexed With Pyruvate At 1.8 A Resolution
pdb|3RK8|B Chain B, Crystal Structure Of The Chloride Inhibited
Dihydrodipicolinate Synthase From Acinetobacter
Baumannii Complexed With Pyruvate At 1.8 A Resolution
pdb|3TAK|A Chain A, Crystal Structure Of The Complex Of Dhdps From
Acinetobacter Baumannii With Pyruvate At 1.4 A
Resolution
pdb|3TAK|B Chain B, Crystal Structure Of The Complex Of Dhdps From
Acinetobacter Baumannii With Pyruvate At 1.4 A
Resolution
pdb|3TCE|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
5-Hydroxylysine At 2.6 A Resolution
pdb|3TCE|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
5-Hydroxylysine At 2.6 A Resolution
pdb|3TDF|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
2-Ketobutanoic Acid At 1.99 A Resolution
pdb|3TDF|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With
2-Ketobutanoic Acid At 1.99 A Resolution
pdb|3U8G|A Chain A, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With Oxalic Acid
At 1.80 A Resolution
pdb|3U8G|B Chain B, Crystal Structure Of The Complex Of Dihydrodipicolinate
Synthase From Acinetobacter Baumannii With Oxalic Acid
At 1.80 A Resolution
pdb|3UQN|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Oxamic Acid At
1.9 Angstrom Resolution
pdb|3UQN|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Oxamic Acid At
1.9 Angstrom Resolution
pdb|4DXV|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Mg And Cl Ions At
1.80 A Resolution
pdb|4DXV|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Acinetobacter Baumannii Complexed With Mg And Cl Ions At
1.80 A Resolution
Length = 291
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 7 STEEEKLKIISTLRQETKK-TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
S EE I +R K+ IIAGT STR I+LT+ L++ PYY K
Sbjct: 52 SMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYY--NK 109
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
T++ +Y+H+ ++A+ +P+I+YN T +D+S DT V+LA NI G+KD
Sbjct: 110 PTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKD 162
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 9 EEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTE 68
E EK+ + R + +IAGT +T + LT L++ PYY K T+
Sbjct: 54 EHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY--NKPTQ 111
Query: 69 DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD-TDNIKLAN 126
+YEHF +VA IP+IIYN T ++ISVDT+ KLA ENI K+ T N+ +
Sbjct: 112 RGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRIS 171
Query: 127 MANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMK 186
+ +FSV G I+ + V+ + EL A G + A +
Sbjct: 172 EIVKRLGESFSVLSGDDSLTLPMMALGAKGVISVANNVMPREVKELIRAALEGDFRRARE 231
Query: 187 LQHRL 191
+ + L
Sbjct: 232 IHYYL 236
>pdb|3EB2|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
pdb|3EB2|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Rhodopseudomonas Palustris At 2.0a Resolution
Length = 300
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 4 SFKSTEEEKLKIISTLRQETKKT-IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYF 62
++ T + + + +T+ ++ ++AG S + + L + YF
Sbjct: 52 AYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYF 111
Query: 63 QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD--TD 120
K + I +F ++AD IPV+IY N D+++D + +LA H IR +KD T+
Sbjct: 112 PLKDAQ--IESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDASTN 169
Query: 121 NIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPIC-------ELY 173
+L ++ N+ D VF GG+ ++ GP C LY
Sbjct: 170 TGRLLSIINRCGD-ALQVFSASAHIPAAVMLI---GGVGWMA----GPACIAPRQSVALY 221
Query: 174 DLAKAGKWEEAMKLQHRLVK 193
+L KA +W+EA+ LQ +L +
Sbjct: 222 ELCKAQRWDEALMLQRKLWR 241
>pdb|3FLU|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
pdb|3FLU|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From The
Pathogen Neisseria Meningitidis
Length = 297
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 7 STEEEKLKIISTLRQETKKT-IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
S EE I + ++ K+ +IAGT +T I L+Q L + PYY K
Sbjct: 58 SVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYY--NK 115
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----D 120
+++ IY+HF ++A+ + IP+IIYN T + ++ DT+++LA NI GVK+
Sbjct: 116 PSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGS 175
Query: 121 NIKLANMANQ 130
NI+L N A +
Sbjct: 176 NIELINRAPE 185
>pdb|3H5D|A Chain A, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|B Chain B, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|C Chain C, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
pdb|3H5D|D Chain D, Dihydrodipicolinate Synthase From Drug-Resistant
Streptococc Pneumoniae
Length = 311
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 9/190 (4%)
Query: 8 TEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLT-QXXXXXXXXXXLILCPYYFQK 64
T +E+L++ + +++ + +IAG TR +I+ + L + PYY
Sbjct: 58 THDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYY--N 115
Query: 65 KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKL 124
K +++ +Y+HF ++AD S +P+IIYN ++++ +T+++LA H NI GVK+ + L
Sbjct: 116 KPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTS--L 173
Query: 125 ANMAN--QTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWE 182
ANMA + K F ++ G I+ S G + E++ +
Sbjct: 174 ANMAYLIEHKPEEFLIYTGEDGDAFHAMNLGADGVISVASHTNGDEMHEMFTAIAESDMK 233
Query: 183 EAMKLQHRLV 192
+A +Q + +
Sbjct: 234 KAAAIQRKFI 243
>pdb|2A6N|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
pdb|2A6N|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138a
Length = 292
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 131 ILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|1DHP|A Chain A, Dihydrodipicolinate Synthase
pdb|1DHP|B Chain B, Dihydrodipicolinate Synthase
pdb|1YXC|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXC|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase To 1.9 A
pdb|1YXD|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|1YXD|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase Bound
With Allosteric Inhibitor (S)-Lysine To 2.0 A
pdb|2ATS|A Chain A, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
pdb|2ATS|B Chain B, Dihydrodipicolinate Synthase Co-Crystallised With
(S)-Lysine
Length = 292
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|1S5T|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
pdb|1S5T|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Thr44 To Val44
Length = 292
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|3QZE|A Chain A, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|B Chain B, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|C Chain C, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
pdb|3QZE|D Chain D, Crystal Structure Of Dapa (Pa1010) At 1.6 A Resolution
Length = 314
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 10 EEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMT 67
EE +++I + + K I IAGT STR + LT+ L++ PYY K T
Sbjct: 76 EEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYY--NKPT 133
Query: 68 EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLAN 126
++ +Y+HF +A+ IP I+YN T+ D+ +T+ +L+ NI G+K+ T +++ A
Sbjct: 134 QEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAK 193
Query: 127 MANQTKDLNFSVF 139
+ +F V+
Sbjct: 194 EVIERVGKDFLVY 206
>pdb|2A6L|A Chain A, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
pdb|2A6L|B Chain B, Dihydrodipicolinate Synthase (E. Coli)- Mutant R138h
Length = 292
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 131 ILYNVPSHTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|2VC6|A Chain A, Structure Of Mosa From S. Meliloti With Pyruvate Bound
pdb|2VC6|B Chain B, Structure Of Mosa From S. Meliloti With Pyruvate Bound
Length = 292
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 4/193 (2%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYY 61
S + +E E++ I+ + +IAG ST I + LI+ PYY
Sbjct: 47 SPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYY 106
Query: 62 FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD-T 119
K T++ IY+HF ++ S IP+I+YN + I+I V+TL ++ N++GV D T
Sbjct: 107 --NKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDAT 164
Query: 120 DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAG 179
N+ ++ +F++ G I+ + V + G
Sbjct: 165 GNLLRPSLERMACGEDFNLLTGEDGTALGYMAHGGHGCISVTANVAPALCADFQQACLNG 224
Query: 180 KWEEAMKLQHRLV 192
+ A+KLQ RL+
Sbjct: 225 DFAAALKLQDRLM 237
>pdb|3I7Q|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7Q|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a
pdb|3I7R|A Chain A, Dihydrodipicolinate Synthase - K161r
pdb|3I7R|B Chain B, Dihydrodipicolinate Synthase - K161r
pdb|3I7S|A Chain A, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site.
pdb|3I7S|B Chain B, Dihydrodipicolinate Synthase Mutant - K161a - With The
Substrate Pyruvate Bound In The Active Site
Length = 292
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+++ T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIREATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|1S5W|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
pdb|1S5W|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr133 To Phe133
Length = 292
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I++N T D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 131 ILFNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|1S5V|A Chain A, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
pdb|1S5V|B Chain B, Crystal Structure Analysis Of A Mutant Of
Dihydrodipicolinate Synthase--Residue Tyr107 To Phe107
Length = 292
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PY+ + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYF--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+K+ T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|2PUR|A Chain A, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A.
pdb|2PUR|B Chain B, Structure Of Dihydrodipicolinate Synthase Mutant Thr44ser
At 1.7 A
Length = 292
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|3C0J|A Chain A, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3C0J|B Chain B, Structure Of E. Coli Dihydrodipicolinate Synthase
Complexed With Hydroxypyruvate
pdb|3DU0|A Chain A, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|3DU0|B Chain B, E. Coli Dihydrodipicolinate Synthase With First Substrate,
Pyruvate, Bound In Active Site
pdb|4EOU|A Chain A, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
pdb|4EOU|B Chain B, Crystal Structure Of E. Coli Dihydrodipicolinate Synthase
With Pyruvate And Succinic Semi-Aldehyde Bound In Active
Site
Length = 292
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|2OJP|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
pdb|2OJP|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase From E.Coli- Dhdps-L197y
Length = 292
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQYGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINERLM 237
>pdb|3G0S|A Chain A, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
pdb|3G0S|B Chain B, Dihydrodipicolinate Synthase From Salmonella Typhimurium
Lt2
Length = 316
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PYY + T++ +++HF ++A+++ +P
Sbjct: 97 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY--NRPTQEGLFQHFKAIAEHTDLPQ 154
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI +K+ T N+ + + +F +
Sbjct: 155 ILYNVPSRTGCDMLPETVGRLAEIKNIIAIKEATGNLTRVHQIKELVSDDFILLSGDDAS 214
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G++ EA + RL+
Sbjct: 215 ALDFMQLGGHGVISVTANVAAREMADMCKLAAEGQFAEARAINQRLM 261
>pdb|3DEN|A Chain A, Structure Of E. Coli Dhdps Mutant Y107w
pdb|3DEN|B Chain B, Structure Of E. Coli Dhdps Mutant Y107w
Length = 292
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT +T I LTQ L + PY+ + +++ +Y+HF ++A+++ +P
Sbjct: 73 VIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYW--NRPSQEGLYQHFKAIAEHTDLPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVFXXXXXX 145
I+YN T D+ +T+ +LA +NI G+ + T N+ N + +F +
Sbjct: 131 ILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDAS 190
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192
G I+ + V + ++ LA G + EA + RL+
Sbjct: 191 ALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGHFAEARVINQRLM 237
>pdb|3NOE|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3NOE|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa
pdb|3PS7|A Chain A, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PS7|B Chain B, Biochemical Studies And Crystal Structure Determination Of
Dihydrodipicolinate Synthase From Pseudomonas Aeruginosa
pdb|3PUO|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3PUO|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Pseudomonas Aeruginosa(Psdhdps)complexed With L-Lysine
At 2.65a Resolution
pdb|3S8H|A Chain A, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
pdb|3S8H|B Chain B, Structure Of Dihydrodipicolinate Synthase Complexed With
3- Hydroxypropanoic Acid(Hpa)at 2.70 A Resolution
Length = 292
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAGT STR + LT+ L++ PYY K T++ +Y+HF +A+ IP
Sbjct: 73 VIAGTGANSTREAVALTEAAKSGGADACLLVTPYY--NKPTQEGMYQHFRHIAEAVAIPQ 130
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKLANMANQTKDLNFSVF 139
I+YN T+ D+ +T+ +L+ NI G+K+ T +++ A + +F V+
Sbjct: 131 ILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIERVGKDFLVY 184
>pdb|1XXX|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|F Chain F, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|G Chain G, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
pdb|1XXX|H Chain H, Crystal Structure Of Dihydrodipicolinate Synthase (Dapa,
Rv2753c) From Mycobacterium Tuberculosis
Length = 303
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 4/119 (3%)
Query: 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
S +T+ EK++++ + + + +IAG T +I L + L++ P
Sbjct: 59 GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 118
Query: 60 YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
YY K + + HF +VAD + +P+++Y+ + + I DT+ LA H NI GVKD
Sbjct: 119 YY--SKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKD 175
>pdb|3IRD|A Chain A, Structure Of Dihydrodipicolinate Synthase From Clostridium
Botulinum
Length = 291
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 17/190 (8%)
Query: 8 TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
TE E+ + I + + K I IAGT +T A+I +++ L++ PYY K
Sbjct: 52 TETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY--NK 109
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLA 125
T+ + +HF +V+D P+IIYN T ++I+ TL +L +NI VK+ ++
Sbjct: 110 TTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVKEASG-NIS 168
Query: 126 NMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPI-------CELYDLAKA 178
+A Q K L GGI +S VL I CELY
Sbjct: 169 QIA-QIKALCGDKLDIYSGNDDQIIPILALGGIGVIS-VLANVIPEDVHNMCELY---LN 223
Query: 179 GKWEEAMKLQ 188
GK EA+K+Q
Sbjct: 224 GKVNEALKIQ 233
>pdb|3M5V|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
pdb|3M5V|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni
Length = 301
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 23 TKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNS 82
TK ++AG +T + L + L + PYY K T+ +YEH+ ++A +
Sbjct: 76 TKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYY--NKPTQQGLYEHYKAIAQSV 133
Query: 83 PIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT 119
IPV++YN T +IS DT++KL ENI GVK+
Sbjct: 134 DIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEA 171
>pdb|3L21|A Chain A, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|B Chain B, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|C Chain C, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|D Chain D, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|E Chain E, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
pdb|3L21|F Chain F, The Crystal Structure Of A Dimeric Mutant Of
Dihydrodipicolinate Synthase (Dapa, Rv2753c) From
Mycobacterium Tuberculosis - Dhdps- A204r
Length = 304
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
S +T+ EK++++ + + + +IAG T +I L + L++ P
Sbjct: 60 GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119
Query: 60 YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
YY K + + HF +VAD + +P+++Y+ + + I DT+ LA H NI GV D
Sbjct: 120 YY--SKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXD 176
>pdb|3A5F|A Chain A, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
pdb|3A5F|B Chain B, High-Resolution Structure Of Dhdps From Clostridium
Botulinum In Complex With Pyruvate
Length = 291
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 17/190 (8%)
Query: 8 TEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
TE E+ + I + + K I IAGT +T A+I +++ L++ PYY K
Sbjct: 52 TETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY--NK 109
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLA 125
T+ + +HF +V+D P+IIYN T ++I+ TL +L +NI V + ++
Sbjct: 110 TTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEASG-NIS 168
Query: 126 NMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPI-------CELYDLAKA 178
+A Q K L GGI +S VL I CELY
Sbjct: 169 QIA-QIKALCGDKLDIYSGNDDQIIPILALGGIGVIS-VLANVIPEDVHNMCELY---LN 223
Query: 179 GKWEEAMKLQ 188
GK EA+K+Q
Sbjct: 224 GKVNEALKIQ 233
>pdb|3LER|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
pdb|3LER|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Campylobacter Jejuni Subsp. Jejuni Nctc 11168
Length = 301
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 23 TKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNS 82
TK ++AG +T + L + L + PYY K T+ +YEH+ ++A +
Sbjct: 76 TKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYY--NKPTQQGLYEHYKAIAQSV 133
Query: 83 PIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT 119
IPV++YN T +IS DT++KL ENI GV +
Sbjct: 134 DIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVXEA 171
>pdb|3CPR|A Chain A, The Crystal Structure Of Corynebacterium Glutamicum
Dihydrodipicolinate Synthase To 2.2 A Resolution
pdb|3CPR|B Chain B, The Crystal Structure Of Corynebacterium Glutamicum
Dihydrodipicolinate Synthase To 2.2 A Resolution
Length = 304
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
S +T EKL+++ +R+E + +IAG +TR +++L + L++ P
Sbjct: 61 GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTP 120
Query: 60 YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
YY K +++ + HF ++A + +P+ +Y+ + I I DT+ +L+ I V D
Sbjct: 121 YY--SKPSQEGLLAHFGAIAAATEVPICLYDIPGRSGIPIESDTMRRLSELPTILAVXD 177
>pdb|2R8W|A Chain A, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
pdb|2R8W|B Chain B, The Crystal Structure Of Dihydrodipicolinate Synthase
(Atu0899) From Agrobacterium Tumefaciens Str. C58
Length = 332
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK-----DTD 120
+T++ Y HF +VA + +P+ IYNN T S + LV+LA+ NIR +K D D
Sbjct: 143 LTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKXPLPADAD 202
Query: 121 NI-KLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLG---GPICELYDLA 176
+LA + + D +F++ AGG S V G P +L A
Sbjct: 203 YAGELARLRPKLSD-DFAI---GYSGDWGCTDATLAGGDTWYSVVAGLLPVPALQLXRAA 258
Query: 177 KAGKWEEAMKL 187
+AG EEA +L
Sbjct: 259 QAGNAEEAKRL 269
>pdb|2RFG|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
pdb|2RFG|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Hahella Chejuensis At 1.5a Resolution
Length = 297
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 8 TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
TEEE ++++ + ++ + +IAG + + Q L + YY +
Sbjct: 51 TEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY--NR 108
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119
+++ +Y+HF V D IP+I+YN +DI +T+ +LA I GVKD
Sbjct: 109 PSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDA 162
>pdb|3DI0|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI0|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Staphylococcus Aureus
pdb|3DI1|A Chain A, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
pdb|3DI1|B Chain B, Crystal Structure Of The Staphylococcus Aureus
Dihydrodipicolinate Synthase-pyruvate Complex
Length = 295
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 8 TEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
T +EK +I+ T+ + + +IAGT T +I + +++ PYY K
Sbjct: 54 TTDEKERILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY--NK 111
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
+ + +HF ++AD +PV++YN TN+ I +T+ L+ H I +KD T++ +
Sbjct: 112 TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEY 171
Query: 125 ANMANQTKDLN-FSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAG 179
+ D N F+++ G I+ ++ V+ LYD ++G
Sbjct: 172 LEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSG 227
>pdb|3PB0|A Chain A, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|B Chain B, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|C Chain C, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB0|D Chain D, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
Length = 300
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 20/198 (10%)
Query: 9 EEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKM 66
E+E+ K++S + + K +I G ST T+ L + L++ PYY K
Sbjct: 58 EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY--NKP 115
Query: 67 TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLAN 126
T++ +Y+H+ +++ + + +++YN T +++ +T ++A +K+ IK AN
Sbjct: 116 TQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD-----LKNVVGIKEAN 170
Query: 127 MANQTKDLNFSV-------FXXXXXXXXXXXXXXCAGG---INALSAVLGGPICELYDLA 176
A D S+ F CAGG I+ +S V + EL
Sbjct: 171 PAAAQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEY 230
Query: 177 KAGKWEEAMKLQHRLVKP 194
+G E++ ++ HR ++P
Sbjct: 231 FSGNLEKSREV-HRKLRP 247
>pdb|2V8Z|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V8Z|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 2 SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
F E+ K I+ + + ++ GT + R TI+L+Q +++
Sbjct: 75 GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 134
Query: 59 PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
PYY+ K++E + +F VAD+ +PV++YN +T D++ + LA NI G+K
Sbjct: 135 PYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIK 192
Query: 118 DT 119
DT
Sbjct: 193 DT 194
>pdb|2YXG|A Chain A, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|B Chain B, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|C Chain C, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
pdb|2YXG|D Chain D, Crystal Structure Of Dihyrodipicolinate Synthase (Dapa)
Length = 289
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 4/166 (2%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+IAG T I+L+ L + PYY K T++ + +HF VA++ +P+
Sbjct: 72 VIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY--NKPTQEGLRKHFGKVAESINLPI 129
Query: 87 IIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDTDNIKLANMANQTKDLNFSVFXXXXXX 145
++YN T +++ T+ LA + NI VK+ N L+ ++ D +V
Sbjct: 130 VLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEA-NPNLSQVSELIHDAKITVLSGNDEL 188
Query: 146 XXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191
G I+ ++ ++ E+ + A G +E+A ++ ++L
Sbjct: 189 TLPIIALGGKGVISVVANIVPKEFVEMVNYALEGDFEKAREIHYKL 234
>pdb|3DAQ|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
pdb|3DAQ|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Methicillin- Resistant Staphylococcus Aureus
Length = 292
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 82/176 (46%), Gaps = 5/176 (2%)
Query: 7 STEEEKLKIISTLRQETKKT-IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
+T+E++L + + + K+ +IAGT T +I + +++ PYY K
Sbjct: 53 TTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYY--NK 110
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-TDNIKL 124
+ + +HF ++AD +PV++YN TN+ I +T+ L+ H I +KD T++ +
Sbjct: 111 TNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEY 170
Query: 125 ANMANQTKDLN-FSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAG 179
+ D N F+++ G I+ ++ V+ LYD ++G
Sbjct: 171 LEEVKKRIDTNSFALYSGNDDNVVEYYQRGGQGVISVIANVIPKEFQALYDAQQSG 226
>pdb|3NEV|A Chain A, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|B Chain B, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|C Chain C, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
pdb|3NEV|D Chain D, Crystal Structure Of Yage, A Prophage Protein From E. Coli
K12 In Complex With Kdgal
Length = 298
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 2 SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
F E+ K I+ + + ++ GT + R TI+L+Q +++
Sbjct: 46 GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 105
Query: 59 PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
PYY+ K++E + +F VAD+ +PV++YN +T D++ + LA NI G+K
Sbjct: 106 PYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIK 163
Query: 118 DT 119
DT
Sbjct: 164 DT 165
>pdb|3PB2|A Chain A, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|B Chain B, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|C Chain C, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|D Chain D, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|E Chain E, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
pdb|3PB2|F Chain F, Characterisation Of The First Monomeric
Dihydrodipicolinate Synthase Variant Reveals
Evolutionary Insights
Length = 300
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 9 EEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKM 66
E+E+ K++S + + K +I G ST T+ L + L++ PYY K
Sbjct: 58 EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY--NKP 115
Query: 67 TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVK----DTDN 121
T++ +Y+H+ +++ + + +++YN T +++ +T ++A +N+ G+K D D
Sbjct: 116 TQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQ 175
Query: 122 I-KLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAV 164
I + ++ Q + S F CAGG +S V
Sbjct: 176 IDRTVSLTKQAR----SDFMVWSGNDDRTFYLLCAGGDGVISVV 215
>pdb|1O5K|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O5K|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase (Tm1521)
From Thermotoga Maritima At 1.80 A Resolution
Length = 306
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 9 EEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKM 66
E+E+ K++S + + K +I G ST T+ L + L++ PYY K
Sbjct: 64 EDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY--NKP 121
Query: 67 TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV----KDTDN 121
T++ +Y+H+ +++ + + +++YN T +++ +T ++A +N+ G+ D D
Sbjct: 122 TQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEANPDIDQ 181
Query: 122 I-KLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGG---INALSAVLGGPICELYDLAK 177
I + ++ Q + S F CAGG I+ +S V + EL
Sbjct: 182 IDRTVSLTKQAR----SDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYF 237
Query: 178 AGKWEEAMKLQHRLVKP 194
+G E++ ++ HR ++P
Sbjct: 238 SGNLEKSREV-HRKLRP 253
>pdb|2V9D|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
pdb|2V9D|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12
Length = 343
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 2 SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
F E+ K I+ + + ++ GT + R TI+L+Q +++
Sbjct: 75 GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 134
Query: 59 PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
PYY+ K++E + +F VAD+ +PV +YN +T D++ + LA NI G+K
Sbjct: 135 PYYW--KVSEANLIRYFEQVADSVTLPVXLYNFPALTGQDLTPALVKTLADSRSNIIGIK 192
Query: 118 DT 119
DT
Sbjct: 193 DT 194
>pdb|3N2X|A Chain A, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|B Chain B, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|C Chain C, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
pdb|3N2X|D Chain D, Crystal Structure Of Yage, A Prophage Protein Belonging To
The Dihydrodipicolinic Acid Synthase Family From E. Coli
K12 In Complex With Pyruvate
Length = 298
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 2 SNSFKSTEEEKLKIISTL---RQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILC 58
F E+ K I+ + + ++ GT + R TI+L+Q +++
Sbjct: 46 GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVIN 105
Query: 59 PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK 117
PYY+ K++E + +F VAD+ +PV++YN +T D++ + LA NI G+
Sbjct: 106 PYYW--KVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIX 163
Query: 118 DT 119
DT
Sbjct: 164 DT 165
>pdb|2PCQ|A Chain A, Crystal Structure Of Putative Dihydrodipicolinate Synthase
(Ttha0737) From Thermus Thermophilus Hb8
Length = 283
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 77/185 (41%), Gaps = 7/185 (3%)
Query: 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMT 67
T EE+ + + LR +K + G E+ L P Y+ +
Sbjct: 48 TPEERARGLRALR--PRKPFLVGLXEETLPQAEGALLEAKAAGAXALLATPPRYYHGSLG 105
Query: 68 EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANM 127
L+ ++ ++A+ P+ +Y+ T +D+ ++ + LA H N+ G+KD+ L+ +
Sbjct: 106 AGLL-RYYEALAEKXPL--FLYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSSG-DLSRI 161
Query: 128 A-NQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGKWEEAMK 186
A Q + F V+ GGI A + + L D + G+ EA +
Sbjct: 162 AFYQARLQEFRVYTGHAPTFLGALALGAEGGILAAANLAPRAYRALLDHFREGRLAEAQE 221
Query: 187 LQHRL 191
LQ +L
Sbjct: 222 LQKKL 226
>pdb|4DPP|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPP|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana
pdb|4DPQ|A Chain A, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
pdb|4DPQ|B Chain B, The Structure Of Dihydrodipicolinate Synthase 2 From
Arabidopsis Thaliana In Complex With (S)-Lysine
Length = 360
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+I T STR I T+ L + PYY K E LI HF SV P
Sbjct: 131 VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY-GKTSIEGLI-AHFQSVLHMGP--T 186
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
IIYN T DI + KL+ + N+ GVK+
Sbjct: 187 IIYNVPGRTGQDIPPRAIFKLSQNPNLAGVKE 218
>pdb|3SI9|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|B Chain B, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
pdb|3SI9|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Bartonella Henselae
Length = 315
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 8 TEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKK 65
T EE +II ++ K ++AG ST ++L + L++ PYY +
Sbjct: 73 THEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYY--NR 130
Query: 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD 118
+ +Y HF S+A IP+IIYN + ID++V+T+ L +NI GVKD
Sbjct: 131 PNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKD 184
>pdb|2R91|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R91|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|A Chain A, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|D Chain D, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|B Chain B, Crystal Structure Of Kd(P)ga From T.Tenax
pdb|2R94|C Chain C, Crystal Structure Of Kd(P)ga From T.Tenax
Length = 286
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 27/193 (13%)
Query: 10 EEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTED 69
+EK+++ ++ I+ + A I L + L PYYF +++E
Sbjct: 51 QEKMELTDAATSAARRVIVQVASLNADEA-IALAKYAESRGAEAVASLPPYYF-PRLSER 108
Query: 70 LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDN-------- 121
I ++F + IPV +YN D+ +L IRGVKDT+
Sbjct: 109 QIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKELG---CIRGVKDTNESLAHTLAY 165
Query: 122 ---IKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKA 178
+ A + N + L F+ F A N L +L G + D A
Sbjct: 166 KRYLPQARVYNGSDSLVFASF-------AVRLDGVVASSANYLPELLAG----IRDAVAA 214
Query: 179 GKWEEAMKLQHRL 191
G E A LQ L
Sbjct: 215 GDIERARSLQFLL 227
>pdb|1F6P|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F6P|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii
pdb|1F73|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F73|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Iii In Complex
With Sialic Acid Alditol
pdb|1F74|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F74|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii Complexed
With 4-Deoxy-Sialic Acid
pdb|1F7B|A Chain A, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F7B|C Chain C, Crystal Structure Analysis Of N-acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii In Complex
With 4-oxo-sialic Acid
pdb|1F5Z|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|B Chain B, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F5Z|D Chain D, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form I
pdb|1F6K|A Chain A, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
pdb|1F6K|C Chain C, Crystal Structure Analysis Of N-Acetylneuraminate Lyase
From Haemophilus Influenzae: Crystal Form Ii
Length = 293
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 82/192 (42%), Gaps = 8/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + EEK +I + E K I IA + + ++L + + P
Sbjct: 49 GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 108
Query: 60 YYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119
+Y++ E I ++ ++ + +I+Y+ F+T +++ ++ +L + + GVK T
Sbjct: 109 FYYKFSFPE--IKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFT 166
Query: 120 --DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAK 177
D L + N ++ G I + V G ++++L K
Sbjct: 167 AGDFYLLERLKKAYP--NHLIWAGFDEMMLPAASLGVDGAIGSTFNVNGVRARQIFELTK 224
Query: 178 AGKWEEAMKLQH 189
AGK +EA+++QH
Sbjct: 225 AGKLKEALEIQH 236
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Query: 57 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116
+ P+Y+ T + I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 112 VTPFYY--PFTFEEIRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 169
Query: 117 KDT--DNIKLANMANQTKD-LNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 173
K T + L + D L S F G I + V G +++
Sbjct: 170 KYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 226
Query: 174 DLAKAGKWEEAMKLQH 189
DLA+ G+ +EA +LQH
Sbjct: 227 DLARQGQIQEAYQLQH 242
>pdb|3NA8|A Chain A, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|B Chain B, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|C Chain C, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
pdb|3NA8|D Chain D, Crystal Structure Of A Putative Dihydrodipicolinate
Synthetase From Pseudomonas Aeruginosa
Length = 315
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 65 KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT 119
K+ E +++H+ +V + +PV +YNN + ID SV+ ++++ +N+ VK++
Sbjct: 132 KLNEAEVFQHYRAVGEAIGVPVXLYNNPGTSGIDXSVELILRIVREVDNVTXVKES 187
>pdb|1W3I|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
pdb|1W3I|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With Pyruvate
Length = 293
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 58 CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK 117
PYY+ + M+E + ++F ++ + SP PV +YN T DI ++ GVK
Sbjct: 99 APYYYPR-MSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEIG---CFTGVK 154
Query: 118 DTDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAK 177
DT + + + + N V+ G + A S L + LA
Sbjct: 155 DTIENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAM 214
Query: 178 AGKWEEAMKLQ 188
K +EA+KLQ
Sbjct: 215 ERKIDEALKLQ 225
>pdb|1W37|A Chain A, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|B Chain B, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|C Chain C, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W37|D Chain D, 2-Keto-3-Deoxygluconate(Kdg) Aldolase Of Sulfolobus
Solfataricus
pdb|1W3N|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3N|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdg
pdb|1W3T|A Chain A, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|B Chain B, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|C Chain C, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
pdb|1W3T|D Chain D, Sulfolobus Solfataricus 2-Keto-3-Deoxygluconate (Kdg)
Aldolase Complex With D-Kdgal, D-Glyceraldehyde And
Pyruvate
Length = 294
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Query: 58 CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK 117
PYY+ + M+E + ++F ++ + SP PV +YN T DI ++ GVK
Sbjct: 100 APYYYPR-MSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKEIG---CFTGVK 155
Query: 118 DTDNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAK 177
DT + + + + N V+ G + A S L + LA
Sbjct: 156 DTIENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAAGSNYLPEVTVTIKKLAM 215
Query: 178 AGKWEEAMKLQ 188
K +EA+KLQ
Sbjct: 216 ERKIDEALKLQ 226
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 57 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116
+ P+Y+ T + I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 113 VTPFYY--PFTFEEIRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 170
Query: 117 KDT--DNIKLANMANQTKD-LNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 173
T + L + D L S F G I + V G +++
Sbjct: 171 XYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 227
Query: 174 DLAKAGKWEEAMKLQH 189
DLA+ G+ +EA +LQH
Sbjct: 228 DLARQGQIQEAYQLQH 243
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 57 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116
+ P+Y+ T + I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 112 VTPFYY--PFTFEEIRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 169
Query: 117 KDT--DNIKLANMANQTKD-LNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 173
T + L + D L S F G I + V G +++
Sbjct: 170 XYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 226
Query: 174 DLAKAGKWEEAMKLQH 189
DLA+ G+ +EA +LQH
Sbjct: 227 DLARQGQIQEAYQLQH 242
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 57 LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116
+ P+Y+ T + I +++ + + + +IIY +T ++IS++ +L +HE I GV
Sbjct: 112 VTPFYY--PFTFEEIRDYYFDIIEATQNNMIIYAIPDLTGVNISIEQFSELFNHEKIVGV 169
Query: 117 KDT--DNIKLANMANQTKD-LNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELY 173
T + L + D L S F G I + V G +++
Sbjct: 170 CYTAPNFFLLERIRKAFPDKLILSGF---DEMLVQATISGVDGAIGSTYNVNGRRARKIF 226
Query: 174 DLAKAGKWEEAMKLQH 189
DLA+ G+ +EA +LQH
Sbjct: 227 DLARQGQIQEAYQLQH 242
>pdb|3TUU|A Chain A, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|B Chain B, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|C Chain C, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|D Chain D, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|E Chain E, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|F Chain F, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|G Chain G, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
pdb|3TUU|H Chain H, Structure Of Dihydrodipicolinate Synthase From The Common
Grapevine
Length = 346
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 27 IIAGTYCESTRATIDLTQXXXXXXXXXXLILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86
+I T STR I T+ L + PYY + + E L+ HF SV P
Sbjct: 117 VIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSL-EGLV-SHFESVLPMG--PT 172
Query: 87 IIYNNTFVTNIDISVDTLVKLAHHENIRGVKD---TDNIK 123
+IYN T DI + +A N+ GV + D IK
Sbjct: 173 VIYNVPSRTGQDIPPGVIHTVAQSANLAGVXECVGNDRIK 212
>pdb|3LCI|A Chain A, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|B Chain B, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|C Chain C, The D-Sialic Acid Aldolase Mutant V251w
pdb|3LCI|D Chain D, The D-Sialic Acid Aldolase Mutant V251w
Length = 319
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 71 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 130
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 131 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 188
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 189 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 246
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 247 KEGDIQTAQKLQ 258
>pdb|3LCG|A Chain A, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|B Chain B, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|C Chain C, The D-Sialic Acid Aldolase Mutant V251l
pdb|3LCG|D Chain D, The D-Sialic Acid Aldolase Mutant V251l
Length = 319
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 71 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 130
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 131 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 188
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 189 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 246
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 247 KEGDIQTAQKLQ 258
>pdb|2WO5|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2WO5|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form I
pdb|2YGY|A Chain A, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|B Chain B, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|C Chain C, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
pdb|2YGY|D Chain D, Structure Of Wild Type E. Coli N-Acetylneuraminic Acid
Lyase In Space Group P21 Crystal Form Ii
Length = 304
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 56 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 115
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 116 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 173
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 174 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 231
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 232 KEGDIQTAQKLQ 243
>pdb|3LCL|A Chain A, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|B Chain B, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|C Chain C, The D-Sialic Acid Aldolase Mutant V251iV265I
pdb|3LCL|D Chain D, The D-Sialic Acid Aldolase Mutant V251iV265I
Length = 319
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 71 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 130
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 131 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 188
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 189 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 246
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 247 KEGDIQTAQKLQ 258
>pdb|3LCF|A Chain A, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|B Chain B, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|C Chain C, The D-Sialic Acid Aldolase Mutant V251i
pdb|3LCF|D Chain D, The D-Sialic Acid Aldolase Mutant V251i
Length = 319
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 71 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 130
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 131 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 188
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 189 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 246
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 247 KEGDIQTAQKLQ 258
>pdb|3LBC|A Chain A, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|B Chain B, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|C Chain C, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBC|D Chain D, D-Sialic Acid Aldolase Complexed With L-Arabinose
pdb|3LBM|A Chain A, D-Sialic Acid Aldolase
pdb|3LBM|B Chain B, D-Sialic Acid Aldolase
pdb|3LBM|C Chain C, D-Sialic Acid Aldolase
pdb|3LBM|D Chain D, D-Sialic Acid Aldolase
Length = 319
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 71 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 130
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 131 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 188
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 189 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 246
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 247 KEGDIQTAQKLQ 258
>pdb|3LCH|A Chain A, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|B Chain B, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|C Chain C, The D-Sialic Acid Aldolase Mutant V251r
pdb|3LCH|D Chain D, The D-Sialic Acid Aldolase Mutant V251r
Length = 319
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 71 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 130
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 131 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 188
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 189 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 246
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 247 KEGDIQTAQKLQ 258
>pdb|2WNQ|A Chain A, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|B Chain B, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|C Chain C, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
pdb|2WNQ|D Chain D, Structure Of The E192n Mutant Of E. Coli
N-Acetylneuraminic Acid Lyase In Space Group P21
Length = 304
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C ST + L + P
Sbjct: 56 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTP 115
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 116 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 173
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 174 TSGDLYQMEQIRREHPDL--VLYNGYDNIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 231
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 232 KEGDIQTAQKLQ 243
>pdb|2YDA|A Chain A, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
pdb|2YDA|B Chain B, Sulfolobus Sulfataricus 2-Keto-3-Deoxygluconate Aldolase
Y103f,Y130f, A198f Variant
Length = 294
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 3/128 (2%)
Query: 61 YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTD 120
YF +M+E + ++F ++ + SP PV ++N T DI ++ GVKDT
Sbjct: 102 YFYPRMSEKHLVKYFKTLCEVSPHPVYLFNYPTATGKDIDAKVAKEIG---CFTGVKDTI 158
Query: 121 NIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLAKAGK 180
+ + + + N V+ G + S L + LA K
Sbjct: 159 ENIIHTLDYKRLNPNMLVYSGSDMLIATVASTGLDGNVAFGSNYLPEVTVTIKKLAMERK 218
Query: 181 WEEAMKLQ 188
+EA+KLQ
Sbjct: 219 IDEALKLQ 226
>pdb|1NAL|1 Chain 1, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|2 Chain 2, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|3 Chain 3, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
pdb|1NAL|4 Chain 4, The Three-Dimensional Structure Of N-Acetylneuraminate
Lyase From Escherichia Coli
Length = 297
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C +T + L + P
Sbjct: 49 GEAFVQSLSEREQVLEIVAEEGKGKIKLIAHVGCVTTAESQQLAASAKRYGFDAVSAVTP 108
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 109 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 166
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 167 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 224
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 225 KEGDIQTAQKLQ 236
>pdb|1FDZ|A Chain A, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|B Chain B, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|C Chain C, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDZ|D Chain D, N-Acetylneuraminate Lyase In Complex With Pyruvate Via
Borohydride Reduction
pdb|1FDY|A Chain A, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|B Chain B, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|C Chain C, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
pdb|1FDY|D Chain D, N-Acetylneuraminate Lyase In Complex With Hydroxypyruvate
Length = 297
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 9/192 (4%)
Query: 2 SNSFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQXXXXXXXXXXLILCP 59
+F + E+ +++ + +E K I IA C +T + L + P
Sbjct: 49 GEAFVQSLSEREQVLEIVAEEGKGKIKLIAHVGCVTTAESQQLAASAKRYGFDAVSAVTP 108
Query: 60 YYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118
+Y+ E +H+ ++ D++ +P+++YN ++ + +++D + L + +K
Sbjct: 109 FYYPFSFEEHC--DHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALKQ 166
Query: 119 T--DNIKLANMANQTKDLNFSVFXXXXXXXXXXXXXXCAGGINALSAVLGGPICELYDLA 176
T D ++ + + DL ++ GGI + ++G +
Sbjct: 167 TSGDLYQMEQIRREHPDL--VLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKAL 224
Query: 177 KAGKWEEAMKLQ 188
K G + A KLQ
Sbjct: 225 KEGDIQTAQKLQ 236
>pdb|1GVH|A Chain A, The X-Ray Structure Of Ferric Escherichia Coli
Flavohemoglobin Reveals An Unespected Geometry Of The
Distal Heme Pocket
Length = 396
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDL 134
F++VAD++P+ +I T + +DTL K H + +N + A++ K+L
Sbjct: 253 FMAVADDTPV-TLISAGVGQTPMLAMLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKEL 311
Query: 135 NFSV 138
S+
Sbjct: 312 GQSL 315
>pdb|2B94|A Chain A, Structural Analysis Of P Knowlesi Homolog Of P Falciparum
Pnp
Length = 267
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 61 YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119
YFQ M E++ ++ + +P+ +++ + V + + D+ V LA++ + V+ T
Sbjct: 18 YFQGHMEEEMQRHIKLTPSQTTPVVLVVGDPGRVDKVKMLCDSYVDLAYNREYKSVECT 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,822,582
Number of Sequences: 62578
Number of extensions: 150624
Number of successful extensions: 493
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 74
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)