Query psy9711
Match_columns 198
No_of_seqs 167 out of 1169
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 17:40:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9711.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9711hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0329 DapA Dihydrodipicolina 100.0 2.4E-53 5.2E-58 352.2 23.6 193 2-197 49-246 (299)
2 TIGR02313 HpaI-NOT-DapA 2,4-di 100.0 7.2E-52 1.6E-56 343.3 23.7 193 2-197 45-243 (294)
3 TIGR00674 dapA dihydrodipicoli 100.0 3.3E-51 7.2E-56 338.3 23.2 193 2-197 43-239 (285)
4 cd00954 NAL N-Acetylneuraminic 100.0 1.1E-50 2.3E-55 335.7 23.8 193 2-197 46-243 (288)
5 TIGR00683 nanA N-acetylneurami 100.0 9.4E-51 2E-55 336.1 23.1 192 2-197 46-242 (290)
6 PRK04147 N-acetylneuraminate l 100.0 1E-50 2.2E-55 336.6 22.9 192 2-197 49-244 (293)
7 PF00701 DHDPS: Dihydrodipicol 100.0 1.2E-50 2.7E-55 335.5 20.1 193 2-197 46-242 (289)
8 PRK03170 dihydrodipicolinate s 100.0 8.7E-50 1.9E-54 330.9 23.7 193 2-197 46-242 (292)
9 cd00408 DHDPS-like Dihydrodipi 100.0 1.1E-49 2.4E-54 328.5 24.0 193 2-197 42-238 (281)
10 cd00952 CHBPH_aldolase Trans-o 100.0 7.1E-50 1.5E-54 333.4 23.1 193 1-197 52-251 (309)
11 cd00950 DHDPS Dihydrodipicolin 100.0 5.3E-49 1.1E-53 325.0 22.8 193 2-197 45-241 (284)
12 TIGR03249 KdgD 5-dehydro-4-deo 100.0 2.2E-47 4.8E-52 316.9 23.5 189 2-197 50-247 (296)
13 cd00951 KDGDH 5-dehydro-4-deox 100.0 8E-47 1.7E-51 312.6 23.8 190 1-197 44-242 (289)
14 cd00953 KDG_aldolase KDG (2-ke 100.0 1.7E-46 3.6E-51 309.2 23.4 186 2-197 44-233 (279)
15 PRK03620 5-dehydro-4-deoxygluc 100.0 2.5E-46 5.3E-51 311.5 23.6 188 2-196 52-248 (303)
16 PLN02417 dihydrodipicolinate s 100.0 1.4E-46 3.1E-51 309.8 21.3 181 2-197 46-231 (280)
17 cd00945 Aldolase_Class_I Class 99.9 1.3E-20 2.8E-25 147.0 15.4 143 14-160 35-201 (201)
18 cd08205 RuBisCO_IV_RLP Ribulos 99.6 4.1E-16 8.8E-21 132.9 8.6 141 1-145 169-351 (367)
19 cd08210 RLP_RrRLP Ribulose bis 99.5 3.3E-13 7.1E-18 114.8 11.0 140 1-145 164-347 (364)
20 PF06187 DUF993: Protein of un 99.4 1.6E-11 3.4E-16 101.1 13.3 190 4-196 84-308 (382)
21 cd00377 ICL_PEPM Members of th 99.2 4.7E-10 1E-14 90.8 12.1 95 1-107 115-218 (243)
22 TIGR02320 PEP_mutase phosphoen 98.6 8.6E-07 1.9E-11 73.3 12.6 98 2-107 127-232 (285)
23 PRK07565 dihydroorotate dehydr 98.4 4.3E-05 9.3E-10 64.7 18.3 165 6-176 83-286 (334)
24 cd04740 DHOD_1B_like Dihydroor 97.7 0.015 3.1E-07 48.4 19.5 161 8-176 73-277 (296)
25 PRK07259 dihydroorotate dehydr 97.6 0.019 4.1E-07 47.8 18.6 165 7-176 74-280 (301)
26 cd02810 DHOD_DHPD_FMN Dihydroo 97.4 0.023 4.9E-07 47.0 17.2 162 5-173 78-287 (289)
27 cd04739 DHOD_like Dihydroorota 97.4 0.048 1E-06 46.1 19.4 163 6-176 81-284 (325)
28 cd02940 DHPD_FMN Dihydropyrimi 97.2 0.075 1.6E-06 44.3 18.1 161 9-174 83-297 (299)
29 COG0159 TrpA Tryptophan syntha 97.1 0.11 2.4E-06 42.5 17.1 141 6-162 75-235 (265)
30 PRK08318 dihydropyrimidine deh 97.0 0.14 3E-06 44.8 18.5 164 8-176 82-300 (420)
31 COG1830 FbaB DhnA-type fructos 97.0 0.016 3.5E-07 47.2 11.0 137 24-165 77-241 (265)
32 PRK08227 autoinducer 2 aldolas 96.9 0.042 9E-07 45.1 13.4 161 24-191 74-262 (264)
33 PF13714 PEP_mutase: Phosphoen 96.9 0.014 3E-07 47.2 10.3 89 5-107 115-211 (238)
34 TIGR00737 nifR3_yhdG putative 96.8 0.24 5.1E-06 41.7 18.0 153 24-179 62-242 (319)
35 PRK11320 prpB 2-methylisocitra 96.7 0.043 9.4E-07 45.7 11.8 89 7-107 130-226 (292)
36 cd06556 ICL_KPHMT Members of t 96.5 0.024 5.2E-07 45.9 9.1 83 11-105 113-214 (240)
37 PRK06552 keto-hydroxyglutarate 96.5 0.23 4.9E-06 39.5 14.5 152 6-191 45-205 (213)
38 cd02803 OYE_like_FMN_family Ol 96.5 0.1 2.2E-06 43.9 13.3 102 9-116 187-310 (327)
39 PRK02506 dihydroorotate dehydr 96.5 0.25 5.5E-06 41.5 15.4 165 6-176 73-288 (310)
40 TIGR02317 prpB methylisocitrat 96.5 0.061 1.3E-06 44.7 11.4 91 7-107 125-221 (285)
41 cd00958 DhnA Class I fructose- 96.4 0.14 3E-06 41.0 13.0 124 35-162 74-216 (235)
42 PRK07226 fructose-bisphosphate 96.4 0.21 4.5E-06 41.0 14.0 147 37-188 93-264 (267)
43 PRK05718 keto-hydroxyglutarate 96.4 0.31 6.7E-06 38.7 14.4 153 7-192 48-208 (212)
44 cd02801 DUS_like_FMN Dihydrour 96.3 0.38 8.1E-06 38.2 15.0 145 24-172 54-226 (231)
45 TIGR01037 pyrD_sub1_fam dihydr 96.3 0.11 2.4E-06 43.2 12.2 56 2-58 135-190 (300)
46 cd02801 DUS_like_FMN Dihydrour 96.2 0.059 1.3E-06 42.8 9.7 112 8-127 107-226 (231)
47 PRK10415 tRNA-dihydrouridine s 96.1 0.69 1.5E-05 39.0 16.6 154 24-180 64-245 (321)
48 PF01207 Dus: Dihydrouridine s 96.1 0.052 1.1E-06 45.6 9.3 111 2-119 100-213 (309)
49 TIGR02319 CPEP_Pphonmut carbox 96.0 0.15 3.2E-06 42.6 11.5 90 7-107 129-225 (294)
50 PF00290 Trp_syntA: Tryptophan 96.0 0.56 1.2E-05 38.4 14.8 141 7-162 69-228 (259)
51 cd04741 DHOD_1A_like Dihydroor 96.0 0.73 1.6E-05 38.4 18.3 164 7-177 71-291 (294)
52 TIGR01037 pyrD_sub1_fam dihydr 96.0 0.72 1.6E-05 38.3 17.9 85 8-92 74-166 (300)
53 TIGR02321 Pphn_pyruv_hyd phosp 96.0 0.17 3.6E-06 42.2 11.8 92 7-108 129-227 (290)
54 CHL00040 rbcL ribulose-1,5-bis 96.0 0.3 6.4E-06 43.4 13.6 99 3-109 208-319 (475)
55 PRK02083 imidazole glycerol ph 95.9 0.23 5E-06 40.3 12.2 146 13-165 63-232 (253)
56 PRK13125 trpA tryptophan synth 95.9 0.7 1.5E-05 37.4 18.1 157 14-191 64-236 (244)
57 TIGR00262 trpA tryptophan synt 95.9 0.75 1.6E-05 37.6 18.1 141 7-162 69-229 (256)
58 PRK07259 dihydroorotate dehydr 95.9 0.2 4.2E-06 41.8 11.8 55 3-58 136-190 (301)
59 CHL00200 trpA tryptophan synth 95.9 0.81 1.7E-05 37.6 17.6 141 7-162 74-233 (263)
60 PRK13398 3-deoxy-7-phosphohept 95.8 0.86 1.9E-05 37.5 16.4 92 24-119 27-142 (266)
61 cd04734 OYE_like_3_FMN Old yel 95.8 0.34 7.4E-06 41.3 13.0 115 8-128 186-329 (343)
62 cd00958 DhnA Class I fructose- 95.8 0.063 1.4E-06 43.0 8.2 64 14-79 169-234 (235)
63 cd04733 OYE_like_2_FMN Old yel 95.8 0.45 9.8E-06 40.4 13.7 113 8-126 194-334 (338)
64 PRK09250 fructose-bisphosphate 95.8 0.13 2.9E-06 43.6 10.2 101 24-127 125-248 (348)
65 cd04740 DHOD_1B_like Dihydroor 95.7 0.36 7.9E-06 40.0 12.8 54 4-58 134-187 (296)
66 PRK01130 N-acetylmannosamine-6 95.7 0.77 1.7E-05 36.3 16.5 119 40-169 78-211 (221)
67 PRK10550 tRNA-dihydrouridine s 95.7 0.21 4.6E-06 42.0 11.4 111 8-128 115-238 (312)
68 COG2513 PrpB PEP phosphonomuta 95.7 0.15 3.3E-06 42.1 10.0 89 7-107 130-226 (289)
69 cd00377 ICL_PEPM Members of th 95.7 0.57 1.2E-05 37.9 13.4 128 42-174 21-193 (243)
70 cd04729 NanE N-acetylmannosami 95.7 0.81 1.8E-05 36.2 14.6 119 39-168 81-214 (219)
71 cd04738 DHOD_2_like Dihydrooro 95.7 0.93 2E-05 38.3 15.1 144 24-174 128-325 (327)
72 cd02930 DCR_FMN 2,4-dienoyl-Co 95.7 0.21 4.5E-06 42.7 11.2 115 8-128 182-320 (353)
73 PLN02433 uroporphyrinogen deca 95.6 0.66 1.4E-05 39.5 13.9 127 39-178 181-336 (345)
74 cd00381 IMPDH IMPDH: The catal 95.6 0.83 1.8E-05 38.7 14.4 143 7-166 67-232 (325)
75 cd03307 Mta_CmuA_like MtaA_Cmu 95.5 1.2 2.7E-05 37.3 16.7 96 39-144 173-275 (326)
76 TIGR01182 eda Entner-Doudoroff 95.5 0.81 1.8E-05 36.1 13.3 152 6-191 40-200 (204)
77 cd02933 OYE_like_FMN Old yello 95.5 0.34 7.3E-06 41.2 12.0 112 8-128 197-328 (338)
78 PRK10415 tRNA-dihydrouridine s 95.5 0.18 3.9E-06 42.6 10.1 115 6-127 115-237 (321)
79 PRK05286 dihydroorotate dehydr 95.5 0.86 1.9E-05 38.8 14.3 156 14-176 126-336 (344)
80 PLN02591 tryptophan synthase 95.4 1.2 2.5E-05 36.4 17.2 141 7-162 61-220 (250)
81 TIGR00737 nifR3_yhdG putative 95.4 0.24 5.1E-06 41.7 10.7 112 9-127 116-235 (319)
82 cd02809 alpha_hydroxyacid_oxid 95.4 1.4 3E-05 36.8 16.8 126 24-162 115-258 (299)
83 cd02931 ER_like_FMN Enoate red 95.4 0.53 1.2E-05 40.7 12.9 115 8-128 196-349 (382)
84 PRK08673 3-deoxy-7-phosphohept 95.3 0.95 2.1E-05 38.5 13.9 63 24-88 93-162 (335)
85 TIGR00222 panB 3-methyl-2-oxob 95.3 0.22 4.8E-06 40.8 9.7 88 24-119 14-113 (263)
86 PRK06806 fructose-bisphosphate 95.2 0.21 4.5E-06 41.4 9.6 107 5-119 106-230 (281)
87 PRK00311 panB 3-methyl-2-oxobu 95.2 0.21 4.6E-06 41.0 9.5 86 27-119 18-114 (264)
88 cd02810 DHOD_DHPD_FMN Dihydroo 95.2 0.41 8.9E-06 39.5 11.4 51 8-58 146-197 (289)
89 PRK00278 trpC indole-3-glycero 95.2 1.4 3.1E-05 36.0 15.2 134 14-166 101-246 (260)
90 PRK04208 rbcL ribulose bisopho 95.1 0.41 9E-06 42.5 11.6 171 4-181 202-425 (468)
91 cd00331 IGPS Indole-3-glycerol 95.1 1.3 2.7E-05 35.0 14.7 131 14-163 62-204 (217)
92 TIGR03326 rubisco_III ribulose 95.1 1.2 2.5E-05 39.0 14.1 169 3-180 185-393 (412)
93 PRK08185 hypothetical protein; 95.0 0.54 1.2E-05 39.0 11.2 99 4-111 99-221 (283)
94 PLN02495 oxidoreductase, actin 95.0 0.72 1.6E-05 40.0 12.4 88 8-95 96-194 (385)
95 PF00478 IMPDH: IMP dehydrogen 94.9 0.6 1.3E-05 39.9 11.5 141 6-161 69-241 (352)
96 PRK15063 isocitrate lyase; Pro 94.8 0.31 6.8E-06 42.5 9.8 96 7-108 199-332 (428)
97 PRK04302 triosephosphate isome 94.8 1.6 3.6E-05 34.6 16.1 138 24-176 56-218 (223)
98 cd06557 KPHMT-like Ketopantoat 94.8 0.35 7.6E-06 39.5 9.5 86 27-119 15-111 (254)
99 TIGR03128 RuMP_HxlA 3-hexulose 94.8 1.5 3.3E-05 34.1 15.8 142 7-162 34-188 (206)
100 PRK00278 trpC indole-3-glycero 94.8 1.2 2.5E-05 36.5 12.6 62 24-91 49-119 (260)
101 cd02932 OYE_YqiM_FMN Old yello 94.7 0.78 1.7E-05 38.9 12.0 97 8-110 199-311 (336)
102 PRK05692 hydroxymethylglutaryl 94.6 0.57 1.2E-05 38.9 10.6 80 7-89 113-205 (287)
103 cd08208 RLP_Photo Ribulose bis 94.6 0.66 1.4E-05 40.7 11.3 167 3-180 201-406 (424)
104 PLN02424 ketopantoate hydroxym 94.6 0.49 1.1E-05 40.0 10.0 77 42-119 47-134 (332)
105 PRK00311 panB 3-methyl-2-oxobu 94.6 0.18 4E-06 41.4 7.4 85 11-107 118-221 (264)
106 cd06556 ICL_KPHMT Members of t 94.5 1.3 2.9E-05 35.8 12.3 76 42-120 24-110 (240)
107 PRK08649 inosine 5-monophospha 94.5 1.9 4.1E-05 37.2 13.8 127 24-165 131-290 (368)
108 cd07939 DRE_TIM_NifV Streptomy 94.5 0.8 1.7E-05 37.3 11.1 85 16-107 75-173 (259)
109 cd02940 DHPD_FMN Dihydropyrimi 94.5 0.34 7.5E-06 40.4 9.1 57 5-62 149-205 (299)
110 TIGR01949 AroFGH_arch predicte 94.4 0.76 1.6E-05 37.4 10.8 118 39-161 92-228 (258)
111 PRK07226 fructose-bisphosphate 94.4 0.24 5.2E-06 40.6 7.8 65 14-80 186-252 (267)
112 PRK13523 NADPH dehydrogenase N 94.4 1.2 2.5E-05 38.0 12.1 97 8-110 187-296 (337)
113 cd08212 RuBisCO_large_I Ribulo 94.3 0.75 1.6E-05 40.7 11.1 168 3-178 186-406 (450)
114 COG0042 tRNA-dihydrouridine sy 94.2 0.49 1.1E-05 40.0 9.5 111 1-119 112-228 (323)
115 PRK12858 tagatose 1,6-diphosph 94.2 1.2 2.7E-05 37.9 11.9 81 10-90 139-248 (340)
116 cd08206 RuBisCO_large_I_II_III 94.2 0.63 1.4E-05 40.7 10.3 174 4-186 174-402 (414)
117 cd06557 KPHMT-like Ketopantoat 94.2 0.24 5.2E-06 40.5 7.2 86 10-107 114-218 (254)
118 PF01180 DHO_dh: Dihydroorotat 94.1 1.5 3.2E-05 36.4 12.0 151 24-177 96-292 (295)
119 TIGR01949 AroFGH_arch predicte 94.1 0.32 7E-06 39.6 7.9 65 14-80 182-248 (258)
120 cd07945 DRE_TIM_CMS Leptospira 94.0 0.97 2.1E-05 37.4 10.8 79 7-88 108-196 (280)
121 cd07948 DRE_TIM_HCS Saccharomy 94.0 1.2 2.6E-05 36.5 11.3 81 6-89 104-190 (262)
122 PF01791 DeoC: DeoC/LacD famil 94.0 0.19 4E-06 40.4 6.4 134 25-161 57-231 (236)
123 cd03315 MLE_like Muconate lact 94.0 2.8 6E-05 34.1 13.5 95 10-119 113-212 (265)
124 cd00717 URO-D Uroporphyrinogen 94.0 3.3 7.1E-05 34.9 14.4 126 39-177 179-334 (335)
125 TIGR00736 nifR3_rel_arch TIM-b 94.0 2.7 5.8E-05 33.9 16.1 154 7-166 48-226 (231)
126 cd08207 RLP_NonPhot Ribulose b 94.0 0.59 1.3E-05 40.8 9.7 172 3-185 184-396 (406)
127 cd08213 RuBisCO_large_III Ribu 93.8 0.95 2.1E-05 39.6 10.7 168 3-180 172-393 (412)
128 PLN02746 hydroxymethylglutaryl 93.8 3.4 7.3E-05 35.4 13.9 188 2-193 60-322 (347)
129 PRK11858 aksA trans-homoaconit 93.8 1.1 2.5E-05 38.6 11.2 81 6-89 108-194 (378)
130 cd08209 RLP_DK-MTP-1-P-enolase 93.7 4.3 9.3E-05 35.3 18.8 165 3-180 165-371 (391)
131 TIGR01036 pyrD_sub2 dihydrooro 93.7 2.7 5.8E-05 35.7 13.1 81 12-93 121-220 (335)
132 cd07941 DRE_TIM_LeuA3 Desulfob 93.7 1.2 2.5E-05 36.7 10.6 50 36-88 150-200 (273)
133 cd07944 DRE_TIM_HOA_like 4-hyd 93.6 1.4 3.1E-05 36.1 10.9 148 29-195 101-260 (266)
134 PRK09490 metH B12-dependent me 93.6 5 0.00011 40.0 16.1 173 8-191 188-393 (1229)
135 PRK08227 autoinducer 2 aldolas 93.5 0.51 1.1E-05 38.8 8.1 64 14-79 182-246 (264)
136 COG2159 Predicted metal-depend 93.5 1.5 3.2E-05 36.6 11.1 99 14-114 88-194 (293)
137 PRK05286 dihydroorotate dehydr 93.5 1.5 3.3E-05 37.4 11.4 54 8-61 190-249 (344)
138 PLN02746 hydroxymethylglutaryl 93.5 1.6 3.5E-05 37.3 11.4 81 6-89 154-247 (347)
139 PRK11815 tRNA-dihydrouridine s 93.5 0.79 1.7E-05 38.9 9.5 113 8-128 117-247 (333)
140 TIGR01859 fruc_bis_ald_ fructo 93.5 1 2.2E-05 37.3 10.0 107 5-121 106-233 (282)
141 cd04735 OYE_like_4_FMN Old yel 93.5 1.2 2.7E-05 38.0 10.8 96 9-110 190-305 (353)
142 PRK08318 dihydropyrimidine deh 93.4 0.72 1.6E-05 40.3 9.4 54 5-59 149-202 (420)
143 cd03174 DRE_TIM_metallolyase D 93.4 1 2.3E-05 36.3 9.8 79 8-89 109-196 (265)
144 PRK00115 hemE uroporphyrinogen 93.3 4.6 0.0001 34.3 14.6 126 40-178 189-343 (346)
145 TIGR00736 nifR3_rel_arch TIM-b 93.2 2.2 4.7E-05 34.4 11.2 97 2-109 113-211 (231)
146 COG2513 PrpB PEP phosphonomuta 93.2 4.3 9.3E-05 33.7 15.6 156 11-177 5-202 (289)
147 cd08148 RuBisCO_large Ribulose 93.1 2.1 4.5E-05 36.9 11.5 149 3-164 168-349 (366)
148 TIGR00742 yjbN tRNA dihydrouri 93.1 2 4.4E-05 36.2 11.3 115 5-127 104-236 (318)
149 TIGR03332 salvage_mtnW 2,3-dik 93.1 2.2 4.8E-05 37.3 11.7 165 3-180 180-387 (407)
150 TIGR02660 nifV_homocitr homoci 93.0 1.8 4E-05 37.1 11.2 82 6-90 105-192 (365)
151 cd07938 DRE_TIM_HMGL 3-hydroxy 93.0 1.9 4.1E-05 35.6 10.8 21 36-56 148-168 (274)
152 KOG2335|consensus 93.0 1.4 3E-05 37.6 10.0 113 1-119 118-233 (358)
153 PLN02489 homocysteine S-methyl 93.0 4.4 9.4E-05 34.5 13.2 112 8-128 191-328 (335)
154 PRK06252 methylcobalamin:coenz 93.0 5 0.00011 33.8 14.2 122 13-144 124-284 (339)
155 PRK00748 1-(5-phosphoribosyl)- 92.9 3.8 8.3E-05 32.5 14.7 140 12-162 62-222 (233)
156 PRK09549 mtnW 2,3-diketo-5-met 92.8 1.9 4.1E-05 37.7 11.0 167 3-180 175-382 (407)
157 PRK06852 aldolase; Validated 92.6 5.5 0.00012 33.5 15.7 160 24-188 92-300 (304)
158 TIGR00126 deoC deoxyribose-pho 92.6 4.4 9.5E-05 32.2 12.4 118 32-155 65-199 (211)
159 TIGR03849 arch_ComA phosphosul 92.5 2.3 5E-05 34.4 10.3 54 5-58 95-155 (237)
160 PRK07998 gatY putative fructos 92.5 1.5 3.2E-05 36.5 9.4 102 4-111 105-222 (283)
161 cd04731 HisF The cyclase subun 92.5 4.2 9.1E-05 32.6 12.1 47 13-63 60-106 (243)
162 cd01295 AdeC Adenine deaminase 92.4 0.89 1.9E-05 39.7 8.6 75 41-119 27-110 (422)
163 TIGR01464 hemE uroporphyrinoge 92.4 6 0.00013 33.4 15.1 126 39-177 182-337 (338)
164 PRK13813 orotidine 5'-phosphat 92.4 4.4 9.6E-05 31.8 16.0 111 44-162 74-194 (215)
165 cd03465 URO-D_like The URO-D _ 92.4 5.8 0.00013 33.1 15.1 129 39-177 170-329 (330)
166 cd07940 DRE_TIM_IPMS 2-isoprop 92.3 2.8 6E-05 34.3 11.0 38 39-79 116-153 (268)
167 PRK12738 kbaY tagatose-bisphos 92.3 2 4.4E-05 35.7 10.1 101 4-111 105-225 (286)
168 PF00682 HMGL-like: HMGL-like 92.3 1.3 2.8E-05 35.3 8.9 79 8-89 102-187 (237)
169 PF13407 Peripla_BP_4: Peripla 92.3 0.82 1.8E-05 36.3 7.8 72 13-92 14-89 (257)
170 cd03309 CmuC_like CmuC_like. P 92.3 6.3 0.00014 33.3 13.3 120 37-166 155-304 (321)
171 TIGR02090 LEU1_arch isopropylm 92.2 2.6 5.7E-05 36.2 11.1 81 6-89 104-190 (363)
172 PRK07565 dihydroorotate dehydr 92.2 1.6 3.6E-05 36.9 9.7 49 12-61 153-201 (334)
173 TIGR01306 GMP_reduct_2 guanosi 92.2 6.6 0.00014 33.3 15.7 142 5-161 64-228 (321)
174 PRK06015 keto-hydroxyglutarate 92.1 4.9 0.00011 31.7 13.7 152 6-191 36-196 (201)
175 TIGR00343 pyridoxal 5'-phospha 92.1 0.62 1.3E-05 38.5 6.6 85 14-119 187-274 (287)
176 PRK07709 fructose-bisphosphate 92.0 2 4.4E-05 35.7 9.8 98 4-111 108-226 (285)
177 TIGR00222 panB 3-methyl-2-oxob 92.0 1.2 2.5E-05 36.7 8.2 61 36-107 159-220 (263)
178 TIGR02082 metH 5-methyltetrahy 92.0 14 0.00031 36.8 17.4 171 7-191 171-377 (1178)
179 TIGR01858 tag_bisphos_ald clas 91.9 1.9 4.2E-05 35.7 9.5 101 4-111 103-223 (282)
180 cd00452 KDPG_aldolase KDPG and 91.9 1.8 3.8E-05 33.5 8.9 74 24-119 97-171 (190)
181 PF01791 DeoC: DeoC/LacD famil 91.9 1.5 3.3E-05 35.0 8.8 75 10-88 108-198 (236)
182 cd04728 ThiG Thiazole synthase 91.9 1.2 2.5E-05 36.2 7.9 62 13-80 164-225 (248)
183 cd04738 DHOD_2_like Dihydrooro 91.9 3.3 7.2E-05 35.0 11.2 53 8-60 181-239 (327)
184 PRK13111 trpA tryptophan synth 91.8 6.2 0.00013 32.3 19.4 140 7-162 71-230 (258)
185 COG1902 NemA NADH:flavin oxido 91.8 3.6 7.7E-05 35.5 11.4 115 8-128 194-332 (363)
186 cd03316 MR_like Mandelate race 91.8 3.4 7.3E-05 35.1 11.3 117 10-141 173-297 (357)
187 cd07937 DRE_TIM_PC_TC_5S Pyruv 91.8 3.1 6.7E-05 34.3 10.7 89 12-108 93-184 (275)
188 PRK12344 putative alpha-isopro 91.7 2.7 5.8E-05 38.0 10.9 83 5-90 117-208 (524)
189 TIGR02320 PEP_mutase phosphoen 91.7 3.8 8.3E-05 34.1 11.0 155 6-162 60-242 (285)
190 PRK10605 N-ethylmaleimide redu 91.6 5.7 0.00012 34.1 12.5 111 8-128 204-335 (362)
191 PRK09195 gatY tagatose-bisphos 91.4 2.3 5.1E-05 35.3 9.5 98 4-111 105-225 (284)
192 cd02911 arch_FMN Archeal FMN-b 91.4 3.2 7E-05 33.4 10.2 55 2-57 118-172 (233)
193 TIGR02708 L_lactate_ox L-lacta 91.4 8.7 0.00019 33.2 16.0 34 24-57 132-166 (367)
194 PF00016 RuBisCO_large: Ribulo 91.4 0.65 1.4E-05 39.0 6.3 168 4-179 56-277 (309)
195 PRK12737 gatY tagatose-bisphos 91.4 2.5 5.5E-05 35.1 9.7 101 4-111 105-225 (284)
196 cd04739 DHOD_like Dihydroorota 91.4 1.9 4.1E-05 36.5 9.2 48 13-61 152-199 (325)
197 cd04728 ThiG Thiazole synthase 91.3 6.9 0.00015 31.8 14.5 145 24-181 62-229 (248)
198 PRK09261 phospho-2-dehydro-3-d 91.3 8.4 0.00018 33.0 12.8 92 24-119 53-188 (349)
199 PTZ00314 inosine-5'-monophosph 91.2 6.7 0.00014 35.2 12.8 128 27-167 230-380 (495)
200 PRK00208 thiG thiazole synthas 91.2 1.5 3.3E-05 35.6 7.9 60 15-80 166-225 (250)
201 COG4981 Enoyl reductase domain 91.2 5.1 0.00011 36.3 11.7 99 13-119 111-220 (717)
202 PF10113 Fibrillarin_2: Fibril 91.1 2.7 5.9E-05 36.7 9.7 75 2-80 198-273 (505)
203 PF01261 AP_endonuc_2: Xylose 91.1 5.1 0.00011 30.5 10.8 82 36-118 70-163 (213)
204 TIGR02634 xylF D-xylose ABC tr 91.1 3.8 8.2E-05 33.7 10.6 80 6-93 7-89 (302)
205 PRK12755 phospho-2-dehydro-3-d 91.0 5.4 0.00012 34.1 11.4 92 24-119 54-189 (353)
206 COG2022 ThiG Uncharacterized e 91.0 0.74 1.6E-05 37.0 5.8 61 13-81 171-233 (262)
207 COG0167 PyrD Dihydroorotate de 91.0 0.99 2.1E-05 38.0 6.9 149 8-187 145-303 (310)
208 TIGR03572 WbuZ glycosyl amidat 90.9 1.5 3.3E-05 34.9 7.8 71 37-115 153-223 (232)
209 PRK08255 salicylyl-CoA 5-hydro 90.8 3.6 7.8E-05 38.9 11.3 98 8-111 596-709 (765)
210 TIGR01769 GGGP geranylgeranylg 90.8 1.3 2.7E-05 35.1 7.0 49 37-89 11-59 (205)
211 TIGR00735 hisF imidazoleglycer 90.7 6.2 0.00013 32.0 11.3 146 12-166 62-235 (254)
212 CHL00162 thiG thiamin biosynth 90.7 8.2 0.00018 31.6 14.2 127 24-163 70-221 (267)
213 TIGR01304 IMP_DH_rel_2 IMP deh 90.6 10 0.00023 32.7 13.3 118 36-165 141-289 (369)
214 PF03437 BtpA: BtpA family; I 90.6 5.7 0.00012 32.5 10.9 94 24-129 140-250 (254)
215 PF01081 Aldolase: KDPG and KH 90.5 3.6 7.9E-05 32.3 9.4 146 7-187 41-196 (196)
216 COG1830 FbaB DhnA-type fructos 90.5 1.2 2.5E-05 36.6 6.7 64 14-79 192-257 (265)
217 PF04481 DUF561: Protein of un 90.4 3.4 7.4E-05 33.0 9.0 88 1-88 94-191 (242)
218 PRK14042 pyruvate carboxylase 90.4 14 0.00031 33.9 15.1 177 6-195 59-274 (596)
219 cd06312 PBP1_ABC_sugar_binding 90.4 4 8.7E-05 32.6 10.0 73 12-92 15-91 (271)
220 cd07945 DRE_TIM_CMS Leptospira 90.4 9.2 0.0002 31.6 18.6 191 2-193 11-267 (280)
221 PF04909 Amidohydro_2: Amidohy 90.3 0.59 1.3E-05 37.4 5.1 104 14-119 60-171 (273)
222 PRK05458 guanosine 5'-monophos 90.1 5 0.00011 34.0 10.5 86 12-108 127-221 (326)
223 TIGR00510 lipA lipoate synthas 90.1 4 8.6E-05 34.2 9.8 74 7-83 188-274 (302)
224 cd03308 CmuA_CmuC_like CmuA_Cm 90.1 12 0.00025 32.4 14.4 129 39-177 216-377 (378)
225 cd04747 OYE_like_5_FMN Old yel 90.1 6.7 0.00014 33.7 11.4 120 8-128 189-342 (361)
226 PRK13397 3-deoxy-7-phosphohept 90.0 9.3 0.0002 31.2 13.5 60 26-87 17-83 (250)
227 PRK13396 3-deoxy-7-phosphohept 90.0 12 0.00025 32.2 13.4 62 25-88 102-170 (352)
228 PRK15408 autoinducer 2-binding 89.9 4.1 8.8E-05 34.5 10.0 72 13-92 39-114 (336)
229 cd00959 DeoC 2-deoxyribose-5-p 89.9 8 0.00017 30.2 11.7 30 28-57 122-151 (203)
230 PRK00208 thiG thiazole synthas 89.9 9.5 0.00021 31.0 14.5 145 24-181 62-229 (250)
231 cd04732 HisA HisA. Phosphorib 89.9 8.5 0.00018 30.4 14.8 137 13-162 62-221 (234)
232 PF00218 IGPS: Indole-3-glycer 89.8 5.8 0.00013 32.4 10.3 130 14-162 99-240 (254)
233 PRK08883 ribulose-phosphate 3- 89.8 8.9 0.00019 30.6 12.1 27 136-162 170-197 (220)
234 PRK12857 fructose-1,6-bisphosp 89.8 4.1 8.9E-05 33.9 9.6 101 4-111 105-225 (284)
235 PF02679 ComA: (2R)-phospho-3- 89.7 1.4 3.1E-05 35.7 6.7 54 5-59 108-169 (244)
236 TIGR00977 LeuA_rel 2-isopropyl 89.7 10 0.00022 34.4 12.7 82 5-89 113-204 (526)
237 cd04724 Tryptophan_synthase_al 89.7 9.5 0.00021 30.7 13.3 64 28-92 5-87 (242)
238 COG0134 TrpC Indole-3-glycerol 89.6 0.83 1.8E-05 37.3 5.2 132 24-162 45-238 (254)
239 cd02911 arch_FMN Archeal FMN-b 89.6 9.5 0.0002 30.6 18.1 139 24-173 72-232 (233)
240 cd06322 PBP1_ABC_sugar_binding 89.6 5.1 0.00011 31.7 10.0 73 12-92 14-89 (267)
241 PRK13587 1-(5-phosphoribosyl)- 89.5 9.6 0.00021 30.6 14.2 138 12-162 64-223 (234)
242 PRK09250 fructose-bisphosphate 89.5 1.3 2.9E-05 37.7 6.5 72 8-82 262-340 (348)
243 TIGR00735 hisF imidazoleglycer 89.5 1.9 4E-05 35.1 7.3 73 36-118 154-228 (254)
244 PRK00915 2-isopropylmalate syn 89.4 6.3 0.00014 35.5 11.2 81 6-89 112-202 (513)
245 cd07943 DRE_TIM_HOA 4-hydroxy- 89.4 5.5 0.00012 32.5 10.0 81 32-119 107-193 (263)
246 PRK01033 imidazole glycerol ph 89.4 10 0.00023 30.8 15.0 140 12-166 62-232 (258)
247 cd04730 NPD_like 2-Nitropropan 89.3 9.3 0.0002 30.2 15.0 139 5-164 34-189 (236)
248 cd00465 URO-D_CIMS_like The UR 89.3 11 0.00024 31.0 13.6 72 39-116 146-227 (306)
249 PRK11320 prpB 2-methylisocitra 89.3 8 0.00017 32.3 11.0 157 6-164 60-238 (292)
250 PRK07315 fructose-bisphosphate 89.3 3.9 8.3E-05 34.2 9.1 100 5-111 108-225 (293)
251 TIGR01305 GMP_reduct_1 guanosi 89.3 13 0.00028 31.7 16.0 140 7-160 78-241 (343)
252 PRK11815 tRNA-dihydrouridine s 89.2 13 0.00027 31.6 15.2 149 24-177 64-251 (333)
253 cd06302 PBP1_LsrB_Quorum_Sensi 89.2 5.9 0.00013 32.4 10.2 74 11-92 13-90 (298)
254 cd04731 HisF The cyclase subun 89.1 1.4 3E-05 35.4 6.3 77 35-119 147-223 (243)
255 COG3684 LacD Tagatose-1,6-bisp 89.1 3.8 8.3E-05 33.6 8.6 80 9-90 142-237 (306)
256 PRK12858 tagatose 1,6-diphosph 89.1 2.7 5.8E-05 35.9 8.2 70 7-79 224-303 (340)
257 PF03932 CutC: CutC family; I 89.0 9.8 0.00021 30.0 12.4 122 14-143 40-178 (201)
258 TIGR01302 IMP_dehydrog inosine 88.9 14 0.0003 32.8 12.9 123 27-162 213-358 (450)
259 PRK09389 (R)-citramalate synth 88.9 6.3 0.00014 35.3 10.8 81 6-89 106-192 (488)
260 PRK12331 oxaloacetate decarbox 88.9 14 0.00031 32.7 12.9 154 29-194 88-273 (448)
261 PRK06852 aldolase; Validated 88.9 2.5 5.5E-05 35.4 7.8 64 14-79 219-287 (304)
262 PRK08195 4-hyroxy-2-oxovalerat 88.9 6 0.00013 33.7 10.2 72 14-89 119-195 (337)
263 PRK05437 isopentenyl pyrophosp 88.9 14 0.0003 31.6 17.0 97 10-110 105-209 (352)
264 TIGR02317 prpB methylisocitrat 88.7 8.7 0.00019 32.0 10.8 157 6-164 55-233 (285)
265 PRK08610 fructose-bisphosphate 88.7 5 0.00011 33.4 9.4 96 4-111 108-226 (286)
266 CHL00162 thiG thiamin biosynth 88.7 3.1 6.7E-05 34.0 7.8 61 14-80 179-239 (267)
267 cd04722 TIM_phosphate_binding 88.6 3.4 7.4E-05 31.0 8.0 74 16-93 49-124 (200)
268 TIGR00167 cbbA ketose-bisphosp 88.5 5.9 0.00013 33.0 9.7 101 4-111 108-229 (288)
269 PRK04302 triosephosphate isome 88.4 3.1 6.6E-05 33.1 7.7 63 7-75 155-218 (223)
270 PF13714 PEP_mutase: Phosphoen 88.4 2.6 5.7E-05 34.1 7.4 153 5-161 50-220 (238)
271 smart00518 AP2Ec AP endonuclea 88.4 12 0.00026 30.2 12.3 112 6-119 41-174 (273)
272 PRK07114 keto-hydroxyglutarate 88.3 12 0.00025 30.0 12.6 151 8-191 49-212 (222)
273 PRK10550 tRNA-dihydrouridine s 88.3 14 0.00031 31.0 14.4 145 24-172 62-237 (312)
274 cd02811 IDI-2_FMN Isopentenyl- 88.2 11 0.00025 31.8 11.5 44 12-58 166-210 (326)
275 TIGR02151 IPP_isom_2 isopenten 88.1 8.7 0.00019 32.6 10.7 96 10-109 98-201 (333)
276 cd00947 TBP_aldolase_IIB Tagat 88.0 6.4 0.00014 32.6 9.5 101 4-111 100-219 (276)
277 cd03319 L-Ala-DL-Glu_epimerase 88.0 14 0.00031 30.7 12.6 92 13-119 165-260 (316)
278 cd04727 pdxS PdxS is a subunit 87.9 2.8 6.1E-05 34.7 7.2 63 14-81 184-247 (283)
279 PRK12756 phospho-2-dehydro-3-d 87.9 16 0.00035 31.2 12.6 145 24-178 52-254 (348)
280 TIGR03151 enACPred_II putative 87.8 3.7 8.1E-05 34.4 8.2 62 40-108 119-180 (307)
281 PRK00748 1-(5-phosphoribosyl)- 87.7 3.5 7.5E-05 32.7 7.7 18 40-57 149-166 (233)
282 COG4018 Uncharacterized protei 87.7 5.4 0.00012 33.9 8.8 85 2-90 198-286 (505)
283 PRK06512 thiamine-phosphate py 87.6 1.6 3.5E-05 34.8 5.7 71 27-110 111-184 (221)
284 cd02811 IDI-2_FMN Isopentenyl- 87.4 16 0.00036 30.8 17.6 98 9-110 96-201 (326)
285 PRK12928 lipoyl synthase; Prov 87.4 8.7 0.00019 32.0 10.1 50 7-57 185-239 (290)
286 PLN02591 tryptophan synthase 87.4 14 0.0003 30.2 11.0 65 28-92 7-89 (250)
287 PRK05567 inosine 5'-monophosph 87.4 19 0.0004 32.3 12.8 112 38-162 228-362 (486)
288 PRK06552 keto-hydroxyglutarate 87.4 7.7 0.00017 30.8 9.4 83 13-117 99-183 (213)
289 PTZ00413 lipoate synthase; Pro 87.3 7 0.00015 33.9 9.6 49 7-56 275-329 (398)
290 PLN02274 inosine-5'-monophosph 87.3 6.6 0.00014 35.4 9.9 84 14-108 278-371 (505)
291 PRK01130 N-acetylmannosamine-6 87.2 6.9 0.00015 30.9 9.1 88 10-110 105-194 (221)
292 cd06309 PBP1_YtfQ_like Peripla 87.2 8.3 0.00018 30.7 9.8 78 7-92 9-89 (273)
293 COG0821 gcpE 1-hydroxy-2-methy 87.2 3.9 8.3E-05 34.7 7.7 68 15-88 115-199 (361)
294 TIGR03217 4OH_2_O_val_ald 4-hy 87.0 8 0.00017 32.9 9.8 55 32-89 138-194 (333)
295 PRK07695 transcriptional regul 87.0 3.4 7.3E-05 32.2 7.1 72 27-110 96-169 (201)
296 PF01207 Dus: Dihydrouridine s 87.0 9.9 0.00021 31.9 10.3 140 24-171 53-225 (309)
297 COG0502 BioB Biotin synthase a 87.0 2.6 5.6E-05 35.8 6.7 67 36-109 86-152 (335)
298 TIGR01036 pyrD_sub2 dihydrooro 86.9 2.5 5.5E-05 35.9 6.8 129 8-173 187-332 (335)
299 cd06317 PBP1_ABC_sugar_binding 86.9 8.4 0.00018 30.6 9.6 75 11-93 14-91 (275)
300 TIGR02708 L_lactate_ox L-lacta 86.7 9.7 0.00021 32.9 10.2 44 6-59 214-258 (367)
301 PLN02495 oxidoreductase, actin 86.7 2.9 6.2E-05 36.3 7.0 56 7-63 165-220 (385)
302 cd01538 PBP1_ABC_xylose_bindin 86.7 11 0.00025 30.4 10.4 77 8-92 10-89 (288)
303 COG2876 AroA 3-deoxy-D-arabino 86.7 2.1 4.6E-05 35.1 5.8 164 25-196 46-282 (286)
304 PRK14041 oxaloacetate decarbox 86.6 6.8 0.00015 35.0 9.4 53 35-90 151-203 (467)
305 cd06292 PBP1_LacI_like_10 Liga 86.5 7.4 0.00016 30.9 9.1 77 10-91 12-91 (273)
306 PRK08745 ribulose-phosphate 3- 86.5 15 0.00033 29.4 12.7 100 39-162 99-201 (223)
307 cd00959 DeoC 2-deoxyribose-5-p 86.5 4.6 9.9E-05 31.6 7.6 81 34-119 66-151 (203)
308 cd06313 PBP1_ABC_sugar_binding 86.3 13 0.00028 29.8 10.5 75 10-92 12-89 (272)
309 PRK05481 lipoyl synthase; Prov 86.3 10 0.00022 31.5 9.9 81 6-87 176-267 (289)
310 TIGR00007 phosphoribosylformim 86.2 15 0.00032 29.0 14.7 136 14-162 62-220 (230)
311 TIGR02319 CPEP_Pphonmut carbox 86.2 14 0.00029 31.0 10.6 172 6-180 59-256 (294)
312 TIGR01163 rpe ribulose-phospha 86.1 14 0.0003 28.6 15.7 134 14-163 46-196 (210)
313 PF01208 URO-D: Uroporphyrinog 86.0 19 0.00042 30.2 13.6 155 11-177 121-341 (343)
314 PLN02979 glycolate oxidase 86.0 20 0.00044 30.9 11.6 44 6-59 209-253 (366)
315 cd04732 HisA HisA. Phosphorib 86.0 4.8 0.0001 31.9 7.6 19 39-57 148-166 (234)
316 PLN02460 indole-3-glycerol-pho 85.9 1.9 4.1E-05 36.7 5.4 61 25-91 119-189 (338)
317 COG0107 HisF Imidazoleglycerol 85.7 17 0.00037 29.4 11.3 78 24-109 14-94 (256)
318 TIGR02321 Pphn_pyruv_hyd phosp 85.7 20 0.00042 30.0 14.5 152 16-177 7-203 (290)
319 cd04736 MDH_FMN Mandelate dehy 85.7 9.4 0.0002 32.9 9.6 41 15-61 227-268 (361)
320 TIGR02637 RhaS rhamnose ABC tr 85.7 12 0.00025 30.5 10.1 77 8-92 9-90 (302)
321 PRK07028 bifunctional hexulose 85.7 3.4 7.3E-05 36.3 7.2 86 13-110 97-182 (430)
322 cd06315 PBP1_ABC_sugar_binding 85.7 14 0.0003 29.8 10.4 73 12-92 15-90 (280)
323 PF02581 TMP-TENI: Thiamine mo 85.6 1.9 4E-05 33.1 4.9 55 28-87 97-153 (180)
324 TIGR01306 GMP_reduct_2 guanosi 85.5 13 0.00029 31.5 10.2 84 14-109 126-219 (321)
325 PRK05198 2-dehydro-3-deoxyphos 85.5 19 0.00041 29.6 12.7 92 25-119 11-132 (264)
326 TIGR01463 mtaA_cmuA methyltran 85.5 21 0.00045 30.1 12.6 121 14-144 125-286 (340)
327 PRK11840 bifunctional sulfur c 85.4 5.5 0.00012 33.7 7.9 62 13-80 238-299 (326)
328 PRK06256 biotin synthase; Vali 85.4 9.6 0.00021 32.1 9.6 46 8-54 185-233 (336)
329 PRK13802 bifunctional indole-3 85.4 26 0.00057 32.9 13.0 125 41-180 124-261 (695)
330 cd06281 PBP1_LacI_like_5 Ligan 85.4 12 0.00026 29.7 9.9 72 12-92 14-88 (269)
331 TIGR01108 oadA oxaloacetate de 85.3 7.7 0.00017 35.6 9.4 52 35-89 147-198 (582)
332 PRK14024 phosphoribosyl isomer 85.3 3 6.4E-05 33.6 6.1 62 13-76 179-240 (241)
333 cd08211 RuBisCO_large_II Ribul 85.3 6.9 0.00015 34.6 8.7 174 4-186 198-427 (439)
334 PRK04180 pyridoxal biosynthesi 85.0 4.7 0.0001 33.5 7.2 85 14-119 193-280 (293)
335 TIGR00587 nfo apurinic endonuc 85.0 20 0.00043 29.4 12.7 81 37-119 88-178 (274)
336 PF05690 ThiG: Thiazole biosyn 84.9 3.1 6.7E-05 33.6 5.9 63 13-81 164-226 (247)
337 PRK02615 thiamine-phosphate py 84.9 2.6 5.7E-05 36.0 5.9 70 27-109 241-313 (347)
338 cd06323 PBP1_ribose_binding Pe 84.8 17 0.00037 28.5 10.4 78 7-92 9-89 (268)
339 PLN02460 indole-3-glycerol-pho 84.8 18 0.00039 30.9 10.7 129 15-163 171-320 (338)
340 TIGR00486 YbgI_SA1388 dinuclea 84.6 20 0.00043 29.1 11.9 125 37-163 44-198 (249)
341 COG1646 Predicted phosphate-bi 84.6 3.4 7.3E-05 33.3 5.9 50 37-90 28-77 (240)
342 PRK10799 metal-binding protein 84.5 9.8 0.00021 30.8 8.8 120 39-162 45-195 (247)
343 PRK08999 hypothetical protein; 84.4 5.8 0.00012 33.0 7.7 77 28-116 228-308 (312)
344 cd06314 PBP1_tmGBP Periplasmic 84.3 19 0.00041 28.6 10.6 76 8-92 9-88 (271)
345 PRK08645 bifunctional homocyst 84.3 30 0.00066 31.9 12.9 112 8-128 149-282 (612)
346 PRK10703 DNA-binding transcrip 84.2 12 0.00026 31.0 9.7 74 10-92 72-148 (341)
347 COG1856 Uncharacterized homolo 84.1 4.2 9.1E-05 32.7 6.2 54 2-56 197-251 (275)
348 PLN02493 probable peroxisomal 84.1 27 0.00058 30.2 11.7 44 6-59 210-254 (367)
349 PLN02424 ketopantoate hydroxym 84.1 17 0.00036 31.0 10.1 75 5-88 76-156 (332)
350 cd00381 IMPDH IMPDH: The catal 84.1 10 0.00022 32.1 9.1 73 10-87 120-201 (325)
351 PF03060 NMO: Nitronate monoox 83.9 5 0.00011 33.9 7.2 93 40-138 146-248 (330)
352 TIGR03572 WbuZ glycosyl amidat 83.9 20 0.00042 28.5 13.3 44 13-60 63-106 (232)
353 cd06267 PBP1_LacI_sugar_bindin 83.9 14 0.00031 28.7 9.5 74 9-92 11-87 (264)
354 cd06318 PBP1_ABC_sugar_binding 83.9 15 0.00032 29.3 9.7 73 12-92 14-89 (282)
355 TIGR00973 leuA_bact 2-isopropy 83.8 19 0.00042 32.3 11.1 81 6-89 109-199 (494)
356 cd06305 PBP1_methylthioribose_ 83.8 16 0.00034 29.0 9.8 72 13-92 15-89 (273)
357 cd01542 PBP1_TreR_like Ligand- 83.7 18 0.00038 28.4 10.1 73 10-92 12-87 (259)
358 cd04729 NanE N-acetylmannosami 83.7 11 0.00025 29.6 8.8 88 11-110 110-198 (219)
359 PRK10355 xylF D-xylose transpo 83.7 18 0.00039 30.3 10.5 78 7-92 35-115 (330)
360 cd00578 L-fuc_L-ara-isomerases 83.6 7.2 0.00016 34.4 8.3 62 24-93 36-98 (452)
361 COG4464 CapC Capsular polysacc 83.6 7.8 0.00017 31.0 7.5 82 32-117 15-103 (254)
362 TIGR03884 sel_bind_Methan sele 83.6 2.7 5.8E-05 27.5 4.1 30 27-57 19-49 (74)
363 PRK01033 imidazole glycerol ph 83.5 6.5 0.00014 32.0 7.5 47 14-63 186-232 (258)
364 PRK13111 trpA tryptophan synth 83.5 23 0.0005 29.0 15.9 89 28-119 17-124 (258)
365 PF01487 DHquinase_I: Type I 3 83.4 8.1 0.00018 30.6 7.9 87 2-90 67-181 (224)
366 PLN02428 lipoic acid synthase 83.3 12 0.00027 32.0 9.2 51 6-57 227-282 (349)
367 PRK13475 ribulose bisphosphate 83.2 10 0.00022 33.6 8.8 173 3-184 198-426 (443)
368 PRK09875 putative hydrolase; P 83.2 7.3 0.00016 32.5 7.7 49 7-58 133-186 (292)
369 COG0042 tRNA-dihydrouridine sy 83.2 27 0.00059 29.5 16.3 151 24-180 66-248 (323)
370 TIGR00034 aroFGH phospho-2-deh 83.1 28 0.00062 29.7 13.2 96 24-119 48-183 (344)
371 cd00019 AP2Ec AP endonuclease 83.1 23 0.00051 28.7 11.0 113 7-119 42-177 (279)
372 TIGR02955 TMAO_TorT TMAO reduc 83.1 21 0.00045 29.1 10.4 72 11-91 13-89 (295)
373 PLN03228 methylthioalkylmalate 83.1 17 0.00036 32.8 10.4 81 6-89 201-292 (503)
374 PRK00366 ispG 4-hydroxy-3-meth 83.1 8.8 0.00019 32.9 8.1 69 14-88 121-206 (360)
375 PRK13957 indole-3-glycerol-pho 83.0 3.7 8.1E-05 33.4 5.7 62 24-91 40-110 (247)
376 PRK08185 hypothetical protein; 82.9 26 0.00056 29.1 13.2 97 14-119 3-100 (283)
377 cd06316 PBP1_ABC_sugar_binding 82.9 16 0.00034 29.6 9.6 72 13-92 15-90 (294)
378 cd06289 PBP1_MalI_like Ligand- 82.8 14 0.0003 29.1 9.1 71 13-92 15-88 (268)
379 TIGR01178 ade adenine deaminas 82.8 7 0.00015 35.6 8.0 76 41-119 68-151 (552)
380 PRK06801 hypothetical protein; 82.8 12 0.00025 31.2 8.7 73 16-89 6-80 (286)
381 PRK10653 D-ribose transporter 82.8 24 0.00052 28.6 11.0 77 8-92 37-116 (295)
382 TIGR03151 enACPred_II putative 82.7 7.3 0.00016 32.7 7.6 90 13-109 150-241 (307)
383 cd06308 PBP1_sensor_kinase_lik 82.7 18 0.00039 28.7 9.8 73 12-92 14-90 (270)
384 PRK10528 multifunctional acyl- 82.6 14 0.0003 28.3 8.7 50 30-81 50-103 (191)
385 cd01541 PBP1_AraR Ligand-bindi 82.6 18 0.00039 28.7 9.8 75 12-91 14-91 (273)
386 PRK06843 inosine 5-monophospha 82.5 33 0.00072 30.1 15.9 124 27-162 142-287 (404)
387 PLN03033 2-dehydro-3-deoxyphos 82.5 27 0.00059 29.0 11.8 93 24-119 16-138 (290)
388 cd06298 PBP1_CcpA_like Ligand- 82.5 19 0.00041 28.3 9.8 74 8-91 10-86 (268)
389 TIGR01919 hisA-trpF 1-(5-phosp 82.3 25 0.00053 28.5 11.1 144 12-162 62-227 (243)
390 cd00951 KDGDH 5-dehydro-4-deox 82.3 7.4 0.00016 32.2 7.5 47 36-82 20-66 (289)
391 TIGR00612 ispG_gcpE 1-hydroxy- 82.2 12 0.00027 31.8 8.6 70 13-88 111-197 (346)
392 PRK11197 lldD L-lactate dehydr 82.1 12 0.00027 32.4 8.9 37 16-58 237-274 (381)
393 PRK09195 gatY tagatose-bisphos 82.0 10 0.00022 31.6 8.1 91 13-111 7-97 (284)
394 PRK14024 phosphoribosyl isomer 81.8 6.3 0.00014 31.7 6.7 74 37-118 146-221 (241)
395 PRK13957 indole-3-glycerol-pho 81.8 27 0.00058 28.5 13.6 128 15-162 93-232 (247)
396 PLN02826 dihydroorotate dehydr 81.8 36 0.00077 29.9 15.4 137 8-177 237-389 (409)
397 COG1609 PurR Transcriptional r 81.7 18 0.00039 30.5 9.7 72 10-91 71-145 (333)
398 PRK12457 2-dehydro-3-deoxyphos 81.7 29 0.00063 28.8 12.9 91 26-119 18-138 (281)
399 KOG0633|consensus 81.7 16 0.00035 30.3 8.8 141 26-178 88-254 (375)
400 TIGR03249 KdgD 5-dehydro-4-deo 81.6 8 0.00017 32.1 7.5 56 33-88 22-79 (296)
401 cd07947 DRE_TIM_Re_CS Clostrid 81.6 19 0.00042 29.8 9.6 16 160-175 242-257 (279)
402 PRK11197 lldD L-lactate dehydr 81.6 35 0.00076 29.7 16.6 34 24-57 121-155 (381)
403 TIGR01520 FruBisAldo_II_A fruc 81.5 15 0.00032 31.6 9.0 100 6-110 9-123 (357)
404 TIGR01927 menC_gamma/gm+ o-suc 81.5 30 0.00065 28.9 13.4 106 8-128 136-250 (307)
405 cd04730 NPD_like 2-Nitropropan 81.5 12 0.00026 29.6 8.2 48 13-64 145-192 (236)
406 PRK09722 allulose-6-phosphate 81.4 26 0.00057 28.1 15.0 116 38-177 96-216 (229)
407 COG1879 RbsB ABC-type sugar tr 81.3 21 0.00045 29.5 9.9 74 12-93 48-126 (322)
408 cd06324 PBP1_ABC_sugar_binding 81.3 19 0.0004 29.5 9.6 73 12-93 15-92 (305)
409 PRK03620 5-dehydro-4-deoxygluc 81.1 8.4 0.00018 32.1 7.4 47 36-82 27-73 (303)
410 TIGR01302 IMP_dehydrog inosine 81.1 35 0.00076 30.2 11.7 87 12-108 252-347 (450)
411 PF02548 Pantoate_transf: Keto 81.0 11 0.00024 31.0 7.8 78 41-119 27-115 (261)
412 PRK12737 gatY tagatose-bisphos 81.0 12 0.00026 31.2 8.1 90 13-110 7-96 (284)
413 PRK08195 4-hyroxy-2-oxovalerat 80.9 34 0.00073 29.1 16.9 140 41-189 92-260 (337)
414 PLN02321 2-isopropylmalate syn 80.9 27 0.00059 32.4 11.1 82 5-89 201-293 (632)
415 TIGR00262 trpA tryptophan synt 80.8 29 0.00063 28.3 13.0 65 28-92 15-98 (256)
416 cd04737 LOX_like_FMN L-Lactate 80.7 26 0.00055 30.1 10.3 91 14-116 211-304 (351)
417 COG0327 Uncharacterized conser 80.7 29 0.00063 28.2 11.0 124 37-162 44-198 (250)
418 cd06275 PBP1_PurR Ligand-bindi 80.7 23 0.00049 27.9 9.7 73 11-92 13-88 (269)
419 cd00952 CHBPH_aldolase Trans-o 80.7 8.2 0.00018 32.3 7.2 55 34-88 26-82 (309)
420 PRK10076 pyruvate formate lyas 80.6 21 0.00045 28.3 9.1 33 24-57 133-165 (213)
421 TIGR01361 DAHP_synth_Bsub phos 80.6 30 0.00065 28.3 11.6 60 26-88 27-94 (260)
422 TIGR03586 PseI pseudaminic aci 80.5 15 0.00032 31.2 8.7 76 14-91 125-201 (327)
423 PRK09485 mmuM homocysteine met 80.3 18 0.00038 30.3 9.1 43 7-49 133-178 (304)
424 cd03328 MR_like_3 Mandelate ra 80.3 36 0.00077 29.0 12.8 95 10-119 166-267 (352)
425 cd01301 rDP_like renal dipepti 80.2 33 0.00071 28.8 10.7 92 24-117 99-226 (309)
426 PF00290 Trp_syntA: Tryptophan 80.2 31 0.00068 28.3 12.4 89 28-119 15-122 (259)
427 PF00218 IGPS: Indole-3-glycer 80.1 2.5 5.4E-05 34.5 3.8 62 24-91 47-117 (254)
428 cd06301 PBP1_rhizopine_binding 80.0 28 0.0006 27.6 10.0 73 12-92 14-90 (272)
429 COG0036 Rpe Pentose-5-phosphat 80.0 29 0.00063 27.8 14.1 128 14-166 75-203 (220)
430 TIGR01305 GMP_reduct_1 guanosi 79.9 32 0.00069 29.4 10.4 120 14-145 139-271 (343)
431 cd01540 PBP1_arabinose_binding 79.9 21 0.00046 28.6 9.4 70 14-92 16-88 (289)
432 PRK12738 kbaY tagatose-bisphos 79.9 17 0.00037 30.2 8.8 89 13-109 7-95 (286)
433 TIGR02990 ectoine_eutA ectoine 79.9 25 0.00055 28.4 9.6 111 44-164 113-236 (239)
434 TIGR01093 aroD 3-dehydroquinat 79.7 29 0.00063 27.6 10.2 15 6-20 74-88 (228)
435 COG0113 HemB Delta-aminolevuli 79.7 5.2 0.00011 33.5 5.5 48 35-91 231-278 (330)
436 PRK14040 oxaloacetate decarbox 79.7 51 0.0011 30.4 15.7 176 7-195 59-275 (593)
437 PRK05096 guanosine 5'-monophos 79.7 38 0.00083 29.0 12.6 138 7-161 79-243 (346)
438 cd00946 FBP_aldolase_IIA Class 79.6 16 0.00035 31.3 8.6 82 10-93 2-97 (345)
439 CHL00200 trpA tryptophan synth 79.6 33 0.00071 28.2 15.4 89 28-119 20-126 (263)
440 PRK14457 ribosomal RNA large s 79.5 20 0.00043 30.7 9.2 62 24-90 259-326 (345)
441 PRK11840 bifunctional sulfur c 79.5 38 0.00082 28.8 14.3 128 24-164 136-282 (326)
442 cd02929 TMADH_HD_FMN Trimethyl 79.4 40 0.00086 29.0 12.0 114 8-128 195-333 (370)
443 cd07896 Adenylation_kDNA_ligas 79.4 10 0.00022 28.7 6.8 55 6-60 101-158 (174)
444 TIGR01858 tag_bisphos_ald clas 79.4 15 0.00033 30.5 8.3 90 13-110 5-94 (282)
445 PF04476 DUF556: Protein of un 79.3 32 0.00069 27.8 10.3 69 40-118 134-209 (235)
446 PRK12822 phospho-2-dehydro-3-d 79.2 40 0.00087 29.0 10.7 95 24-119 53-188 (356)
447 TIGR01303 IMP_DH_rel_1 IMP deh 79.2 47 0.001 29.7 11.9 87 12-108 253-348 (475)
448 TIGR02313 HpaI-NOT-DapA 2,4-di 79.2 10 0.00022 31.5 7.3 44 5-48 16-64 (294)
449 cd00950 DHDPS Dihydrodipicolin 79.2 10 0.00022 31.2 7.2 78 4-85 15-97 (284)
450 PRK05835 fructose-bisphosphate 79.0 38 0.00082 28.5 12.0 140 4-151 105-267 (307)
451 TIGR01212 radical SAM protein, 78.8 30 0.00065 28.9 10.0 51 8-58 161-214 (302)
452 PRK12857 fructose-1,6-bisphosp 78.8 15 0.00033 30.5 8.1 90 13-110 7-96 (284)
453 PRK09140 2-dehydro-3-deoxy-6-p 78.7 30 0.00065 27.2 14.8 131 7-161 43-180 (206)
454 cd06273 PBP1_GntR_like_1 This 78.6 29 0.00062 27.4 9.6 70 12-91 14-86 (268)
455 cd03332 LMO_FMN L-Lactate 2-mo 78.6 29 0.00062 30.2 10.0 96 5-116 238-336 (383)
456 PF00532 Peripla_BP_1: Peripla 78.6 22 0.00047 29.1 9.0 99 10-119 14-128 (279)
457 cd00954 NAL N-Acetylneuraminic 78.5 11 0.00024 31.1 7.3 43 6-48 17-65 (288)
458 PRK08091 ribulose-phosphate 3- 78.4 33 0.00072 27.6 12.6 101 38-162 104-209 (228)
459 cd06270 PBP1_GalS_like Ligand 78.4 27 0.00058 27.6 9.4 71 12-92 14-87 (268)
460 PRK12581 oxaloacetate decarbox 78.4 30 0.00065 30.9 10.2 83 4-89 125-212 (468)
461 PF04551 GcpE: GcpE protein; 78.4 8 0.00017 33.1 6.4 70 14-89 122-207 (359)
462 PRK09701 D-allose transporter 78.3 37 0.00079 27.9 10.6 78 7-92 34-116 (311)
463 smart00633 Glyco_10 Glycosyl h 78.1 34 0.00075 27.6 13.1 75 12-89 105-188 (254)
464 cd00947 TBP_aldolase_IIB Tagat 78.1 16 0.00034 30.3 8.0 89 14-110 3-91 (276)
465 PRK13585 1-(5-phosphoribosyl)- 78.0 12 0.00026 29.8 7.2 91 11-109 110-213 (241)
466 PRK14057 epimerase; Provisiona 77.9 37 0.0008 27.8 12.0 69 80-163 153-224 (254)
467 TIGR00007 phosphoribosylformim 77.9 16 0.00035 28.8 7.9 11 99-109 176-186 (230)
468 PRK12331 oxaloacetate decarbox 77.9 24 0.00052 31.3 9.5 53 35-90 152-204 (448)
469 cd06311 PBP1_ABC_sugar_binding 77.9 27 0.00059 27.7 9.4 60 25-92 35-94 (274)
470 cd06321 PBP1_ABC_sugar_binding 77.8 33 0.00071 27.2 9.9 75 10-92 12-91 (271)
471 cd01539 PBP1_GGBP Periplasmic 77.8 37 0.0008 27.7 10.6 61 24-92 31-91 (303)
472 TIGR00683 nanA N-acetylneurami 77.8 12 0.00026 31.0 7.3 17 6-22 17-33 (290)
473 PRK06267 hypothetical protein; 77.6 28 0.00061 29.7 9.7 49 7-56 150-201 (350)
474 PRK05458 guanosine 5'-monophos 77.6 43 0.00094 28.4 16.1 139 6-163 68-233 (326)
475 PF01068 DNA_ligase_A_M: ATP d 77.5 6.8 0.00015 30.2 5.5 54 5-58 129-184 (202)
476 PRK06843 inosine 5-monophospha 77.5 36 0.00079 29.8 10.3 85 14-108 183-276 (404)
477 COG1850 RbcL Ribulose 1,5-bisp 77.5 11 0.00024 32.7 7.0 77 6-90 199-281 (429)
478 PF04131 NanE: Putative N-acet 77.4 32 0.0007 26.9 9.4 97 13-123 82-181 (192)
479 cd06299 PBP1_LacI_like_13 Liga 77.4 30 0.00064 27.2 9.4 72 11-92 13-87 (265)
480 cd00331 IGPS Indole-3-glycerol 77.4 32 0.0007 26.9 13.1 74 24-109 10-92 (217)
481 cd00408 DHDPS-like Dihydrodipi 77.3 13 0.00028 30.4 7.3 47 3-49 11-62 (281)
482 TIGR00674 dapA dihydrodipicoli 77.2 12 0.00027 30.7 7.2 22 35-56 17-38 (285)
483 PRK02083 imidazole glycerol ph 77.1 14 0.0003 29.9 7.3 61 13-77 186-246 (253)
484 PRK00043 thiE thiamine-phospha 77.0 15 0.00033 28.4 7.4 79 24-116 102-187 (212)
485 cd06285 PBP1_LacI_like_7 Ligan 76.9 31 0.00068 27.2 9.4 69 14-92 16-87 (265)
486 PF00701 DHDPS: Dihydrodipicol 76.8 7.7 0.00017 31.9 5.9 17 6-22 18-34 (289)
487 PLN02535 glycolate oxidase 76.7 41 0.0009 29.0 10.4 44 6-59 209-253 (364)
488 PF01784 NIF3: NIF3 (NGG1p int 76.6 14 0.00031 29.7 7.2 123 38-162 41-200 (241)
489 TIGR03217 4OH_2_O_val_ald 4-hy 76.6 46 0.001 28.2 17.8 145 41-195 91-266 (333)
490 cd07937 DRE_TIM_PC_TC_5S Pyruv 76.5 41 0.00089 27.6 13.4 149 40-196 94-270 (275)
491 cd00564 TMP_TenI Thiamine mono 76.5 8.9 0.00019 29.0 5.8 74 26-110 95-170 (196)
492 cd03326 MR_like_1 Mandelate ra 76.4 51 0.0011 28.6 11.6 95 10-119 189-292 (385)
493 TIGR01768 GGGP-family geranylg 76.3 8.6 0.00019 30.8 5.8 47 38-89 15-61 (223)
494 PRK05437 isopentenyl pyrophosp 76.3 9.5 0.00021 32.7 6.5 45 11-58 173-218 (352)
495 cd07898 Adenylation_DNA_ligase 76.3 10 0.00022 29.4 6.2 56 5-60 126-183 (201)
496 PRK07094 biotin synthase; Prov 76.2 36 0.00078 28.4 9.9 28 148-178 268-295 (323)
497 cd07901 Adenylation_DNA_ligase 76.1 9.3 0.0002 29.9 6.0 55 5-59 133-188 (207)
498 cd00945 Aldolase_Class_I Class 76.1 31 0.00067 26.0 9.3 52 9-60 96-152 (201)
499 cd06319 PBP1_ABC_sugar_binding 76.1 37 0.0008 26.8 10.4 78 7-92 9-89 (277)
500 TIGR01362 KDO8P_synth 3-deoxy- 76.0 42 0.00092 27.5 12.7 92 25-119 3-124 (258)
No 1
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.4e-53 Score=352.23 Aligned_cols=193 Identities=35% Similarity=0.510 Sum_probs=186.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|++|++||||++++ ++++++||+.|+
T Consensus 49 GE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~--~~gl~~hf~~ia 126 (299)
T COG0329 49 GESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPS--QEGLYAHFKAIA 126 (299)
T ss_pred ccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC--hHHHHHHHHHHH
Confidence 8999999999999999999999 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC-CeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL-NFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~-~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++++|+++||+|.+||.+++++++.+|+++|||+|+|++ |..++.+++. ..++ +|.+++|.|+++++.+..|++|
T Consensus 127 ~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~~gd~~~~~~~~~-~~~~~~f~v~~G~d~~~~~~~~~G~~G 205 (299)
T COG0329 127 EAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDSSGDLDRLEEIIA-ALGDRDFIVLSGDDELALPALLLGADG 205 (299)
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCcCHHHHHHHHH-hcCccCeeEEeCchHHHHHHHhCCCCe
Confidence 9999999999999999999999999999999999999999 9999998874 4455 7999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++|+++|++|+++++||+++++||+++|+++|+++.|+.+.
T Consensus 206 ~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~~l~~~ 246 (299)
T COG0329 206 VISVTANVAPELAVELYRAAKAGDIEEARELQDRLLPLIRL 246 (299)
T ss_pred EEecccccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
No 2
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=100.00 E-value=7.2e-52 Score=343.32 Aligned_cols=193 Identities=30% Similarity=0.430 Sum_probs=185.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+||++||++++|+++++++++|+++|+|++++.||+|++++ ++++++||+.|+
T Consensus 45 GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~--~~~l~~~f~~ia 122 (294)
T TIGR02313 45 GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPN--QEALYDHFAEVA 122 (294)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999988 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccC-CCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCC
Q psy9711 80 DNS-PIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCA 155 (198)
Q Consensus 80 ~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~ 155 (198)
+++ ++||++||+|.+||++++++++.+|+ ++|||+|+|++ |..++.++++ ..+++|.||+|.|.++++++.+|++
T Consensus 123 ~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~Ga~ 201 (294)
T TIGR02313 123 DAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESNKDFEHLNHLFL-EAGRDFLLFCGIELLCLPMLAIGAA 201 (294)
T ss_pred HhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEEcchHHHHHHHHCCCC
Confidence 999 89999999999999999999999999 69999999999 8999888774 4567999999999999999999999
Q ss_pred eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 156 GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 156 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
|++|+++|++|++++++|+++++||+++|+++|.++.++++.
T Consensus 202 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~~~~~ 243 (294)
T TIGR02313 202 GSIAATANVEPKEVAELCEAAEAGDIKGAQDLHFELLEANDA 243 (294)
T ss_pred EEEecHHhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
No 3
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=100.00 E-value=3.3e-51 Score=338.30 Aligned_cols=193 Identities=25% Similarity=0.419 Sum_probs=185.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+||++||++.|++++++++++|+++|+|+++++||+|++++ ++++++||++|+
T Consensus 43 GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~--~~~i~~~~~~i~ 120 (285)
T TIGR00674 43 GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYNKPT--QEGLYQHFKAIA 120 (285)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999988 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||+.++++++.+|+++|||+|+|++ |..++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus 121 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~-~~~~~~~v~~G~d~~~~~~~~~G~~G~ 199 (285)
T TIGR00674 121 EEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEATGNLERISEIKA-IAPDDFVVLSGDDALTLPMMALGGKGV 199 (285)
T ss_pred hcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEECchHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999999999 8999888874 456799999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+++++|++|++++++|+++++||+++|+++|+++.|+++.
T Consensus 200 i~~~~~~~P~~~~~l~~a~~~gd~~~A~~lq~~l~~l~~~ 239 (285)
T TIGR00674 200 ISVTANVAPKLMKEMVNNALEGDFAEAREIHQKLMPLHKA 239 (285)
T ss_pred EehHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 4
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=100.00 E-value=1.1e-50 Score=335.68 Aligned_cols=193 Identities=23% Similarity=0.359 Sum_probs=185.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ ++|||+|+++.+++++++++++|+++|||+++++||+|++++ ++++++||++|+
T Consensus 46 GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~--~~~i~~~~~~v~ 123 (288)
T cd00954 46 GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFS--FEEIKDYYREII 123 (288)
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999987 999999999999
Q ss_pred ccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++ ++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.+|+|.|.++.+++..|++|
T Consensus 124 ~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~~~~G~~G 202 (288)
T cd00954 124 AAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTATDLYDLERIRA-ASPEDKLVLNGFDEMLLSALALGADG 202 (288)
T ss_pred HhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hCCCCcEEEEechHHHHHHHHcCCCE
Confidence 999 8999999999999999999999999999999999999 8888888774 45569999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++++++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus 203 ~i~~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~~~~~~~~ 243 (288)
T cd00954 203 AIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVINDVITV 243 (288)
T ss_pred EEeChhhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 5
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=100.00 E-value=9.4e-51 Score=336.07 Aligned_cols=192 Identities=22% Similarity=0.357 Sum_probs=183.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+||++||++.+++++++++++|+++|+|++++.||+|++++ ++++++||++|+
T Consensus 46 GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~--~~~i~~yf~~v~ 123 (290)
T TIGR00683 46 GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS--FPEIKHYYDTII 123 (290)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC--HHHHHHHHHHHH
Confidence 9999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++ ++|+++||+|.+||++++++++.+|+++|||+|||++ |+.++.++++ . .++|.|++|.|.++++.+.+|++|
T Consensus 124 ~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d~~~~~~~~~-~-~~~~~v~~G~d~~~~~~l~~G~~G 201 (290)
T TIGR00683 124 AETGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKK-A-YPNHLIWAGFDEMMLPAASLGVDG 201 (290)
T ss_pred hhCCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-h-CCCCEEEECchHHHHHHHHCCCCE
Confidence 988 7999999999999999999999999999999999999 8999888773 3 358999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++++++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus 202 ~i~~~~n~~P~~~~~i~~~~~~gd~~~A~~lq~~~~~~~~~ 242 (290)
T TIGR00683 202 AIGSTFNVNGVRARQIFELTKAGKLQEALEIQHVTNDLIEG 242 (290)
T ss_pred EEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 6
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=100.00 E-value=1e-50 Score=336.57 Aligned_cols=192 Identities=26% Similarity=0.382 Sum_probs=184.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+++.+++++++++++|+++|||+++++||+|++++ ++++++||++|+
T Consensus 49 GE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~--~~~l~~~f~~va 126 (293)
T PRK04147 49 GEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFS--FEEICDYYREII 126 (293)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |+.++.++++ . .++|.+|+|.|.++.+++..|++|+
T Consensus 127 ~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~~d~~~~~~~~~-~-~~~~~v~~G~d~~~~~~l~~G~~G~ 204 (293)
T PRK04147 127 DSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTAGDLYQLERIRK-A-FPDKLIYNGFDEMFASGLLAGADGA 204 (293)
T ss_pred HhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-h-CCCCEEEEeehHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999999999 9988888773 3 3578999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus 205 is~~~n~~p~~~~~l~~~~~~gd~~~a~~l~~~~~~~~~~ 244 (293)
T PRK04147 205 IGSTYNVNGWRARQIFEAAKAGDIQEAQELQHECNDVIDL 244 (293)
T ss_pred EechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763
No 7
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=100.00 E-value=1.2e-50 Score=335.53 Aligned_cols=193 Identities=36% Similarity=0.598 Sum_probs=184.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+||++||++.|++++++++++|+++|+|+++++||+|++++ ++++++||++|+
T Consensus 46 GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s--~~~l~~y~~~ia 123 (289)
T PF00701_consen 46 GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPS--QEELIDYFRAIA 123 (289)
T ss_dssp TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCC--HHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccch--hhHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999988 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||.+++++++.+|+++|||+|+|++ |+.++.++++ ..+++|.+++|.|.++..++..|++|+
T Consensus 124 ~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~~~~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~ 202 (289)
T PF00701_consen 124 DATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSSGDLERLIQLLR-AVGPDFSVFCGDDELLLPALAAGADGF 202 (289)
T ss_dssp HHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESSSBHHHHHHHHH-HSSTTSEEEESSGGGHHHHHHTTSSEE
T ss_pred hhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCchhHHHHHHHhh-hcccCeeeeccccccccccccccCCEE
Confidence 9999999999999999999999999999999999999998 8888888774 567899999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|++++++++.
T Consensus 203 is~~~n~~P~~~~~i~~~~~~Gd~~~A~~l~~~l~~~~~~ 242 (289)
T PF00701_consen 203 ISGLANVFPELIVEIYDAFQAGDWEEARELQQRLLPLREA 242 (289)
T ss_dssp EESGGGTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EEcccccChHHHHHHHHHHHcCcHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999998864
No 8
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=100.00 E-value=8.7e-50 Score=330.90 Aligned_cols=193 Identities=32% Similarity=0.511 Sum_probs=185.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+||++||++.+++++++++++|+++|+|+++++||+|++++ ++++++||++|+
T Consensus 46 GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~--~~~i~~~~~~ia 123 (292)
T PRK03170 46 GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPT--QEGLYQHFKAIA 123 (292)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999988 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++|+++||+|..+|..++++++.+|+++|||+|+|++ |..++.++++ ..+++|.+|.|.|.++++.+..|++|+
T Consensus 124 ~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~ 202 (292)
T PRK03170 124 EATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEATGDLERVSELIE-LVPDDFAVYSGDDALALPFLALGGVGV 202 (292)
T ss_pred hcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECCCCHHHHHHHHH-hCCCCeEEEECChHhHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999999998 8999888874 456789999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|++++++|+++++||+++|+++|++++++++.
T Consensus 203 is~~~n~~P~~~~~l~~~~~~gd~~~a~~l~~~l~~~~~~ 242 (292)
T PRK03170 203 ISVAANVAPKEMAEMCDAALAGDFAEAREIHRRLLPLHKA 242 (292)
T ss_pred EEhHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
No 9
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=100.00 E-value=1.1e-49 Score=328.52 Aligned_cols=193 Identities=35% Similarity=0.540 Sum_probs=186.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ ++||++|+++.+++++++++++|+++|+|+++++||+|++++ ++++++||++|+
T Consensus 42 GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~--~~~~~~~~~~ia 119 (281)
T cd00408 42 GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPS--QEGIVAHFKAVA 119 (281)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999987 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++|+++||+|.+||+.++++++.+|+++|||+|+|++ |..++.++++ ..+++|.+|+|.|.++.+.+..|++|+
T Consensus 120 ~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~~~~~~~-~~~~~~~v~~G~d~~~~~~l~~G~~G~ 198 (281)
T cd00408 120 DASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDRLTRLIA-LLGPDFAVLSGDDDLLLPALALGADGA 198 (281)
T ss_pred hcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEEcchHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999999999 8999988874 456899999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|++++++|+++++||+++|+++|+++.++++.
T Consensus 199 i~~~~n~~p~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 238 (281)
T cd00408 199 ISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEA 238 (281)
T ss_pred EehHHhhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 10
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=7.1e-50 Score=333.38 Aligned_cols=193 Identities=19% Similarity=0.220 Sum_probs=179.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
-||+++||.+||+++++.+++++ |+|||+||++.+|+++++++++|+++|||++|++||+|++++ ++++++||++|
T Consensus 52 tGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~--~~~l~~yf~~v 129 (309)
T cd00952 52 FGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLD--VDTAVQFYRDV 129 (309)
T ss_pred cccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCC--HHHHHHHHHHH
Confidence 39999999999999999999998 899999999999999999999999999999999999999988 99999999999
Q ss_pred HccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCC--
Q psy9711 79 ADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGC-- 154 (198)
Q Consensus 79 ~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~-- 154 (198)
++++ ++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|.|.++ ..+..|+
T Consensus 130 a~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnivgiKdssd~~~~~~~i~-~~~~~~~v~~g~d~~l-~~~~~~~~~ 207 (309)
T cd00952 130 AEAVPEMAIAIYANPEAFKFDFPRAAWAELAQIPQVVAAKYLGDIGALLSDLA-AVKGRMRLLPLEDDYY-AAARLFPEE 207 (309)
T ss_pred HHhCCCCcEEEEcCchhcCCCCCHHHHHHHhcCCCEEEEEecCChHHHHHHHH-HcCCCeEEeecchhHH-HHHHhcCcc
Confidence 9999 6999999999999999999999999999999999999 9988887774 4567999999999965 5554454
Q ss_pred -CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 155 -AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 155 -~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|++++++|++|++++++|+++++||+++|+++|+++.++++.
T Consensus 208 ~~G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~lq~~~~~~~~~ 251 (309)
T cd00952 208 VTAFWSSGAACGPAPVTALRDAVATGDWTDARALTDRMRWAAEP 251 (309)
T ss_pred CccEEEeccccCcHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999988764
No 11
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=100.00 E-value=5.3e-49 Score=325.04 Aligned_cols=193 Identities=31% Similarity=0.485 Sum_probs=185.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ ++||++||++.+++++++++++|+++|+|+++++||+|++++ ++++++||++|+
T Consensus 45 GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~--~~~l~~~~~~ia 122 (284)
T cd00950 45 GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPS--QEGLYAHFKAIA 122 (284)
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccccCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999988 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.++|+.+|++++.+|+++|||+|+|++ |..++.++++ ..+++|.+|+|.|.++.+.+..|++|+
T Consensus 123 ~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~~~~~~~~~~-~~~~~~~v~~G~d~~~~~~~~~G~~G~ 201 (284)
T cd00950 123 EATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLDRVSELIA-LCPDDFAVLSGDDALTLPFLALGGVGV 201 (284)
T ss_pred hcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHH-hCCCCeEEEeCChHhHHHHHHCCCCEE
Confidence 9999999999999999999999999999999999999998 8888888774 457899999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus 202 ~s~~~n~~p~~~~~~~~~~~~g~~~~a~~l~~~l~~~~~~ 241 (284)
T cd00950 202 ISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLIKA 241 (284)
T ss_pred EehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998763
No 12
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=100.00 E-value=2.2e-47 Score=316.94 Aligned_cols=189 Identities=21% Similarity=0.298 Sum_probs=177.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+||++||++ +|+++++++++|+++|+|+++++||+|++++ ++++++||++|+
T Consensus 50 GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s--~~~i~~~f~~v~ 126 (296)
T TIGR03249 50 GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYLINGE--QEGLYAHVEAVC 126 (296)
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 8999999996 7999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecC---hhhHHHHhhcC
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGS---AGYLLSGLLVG 153 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~G 153 (198)
+++++||++|| ++|.+++++++.+|++ +|||+|||++ |+.++.++++ ..+++|.||+|. |..+++.+..|
T Consensus 127 ~a~~~pvilYn---~~g~~l~~~~~~~La~~~~nvvgiKds~~d~~~~~~~~~-~~~~~~~v~~G~~~~d~~~~~~~~~G 202 (296)
T TIGR03249 127 ESTDLGVIVYQ---RDNAVLNADTLERLADRCPNLVGFKDGIGDMEQMIEITQ-RLGDRLGYLGGMPTAEVTAPAYLPLG 202 (296)
T ss_pred hccCCCEEEEe---CCCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEeCCCcchhhHHHHHhCC
Confidence 99999999999 5789999999999996 9999999999 9999988874 456799999996 66788999999
Q ss_pred CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHH-Hhhchhhc
Q psy9711 154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQH-RLVKPDVT 197 (198)
Q Consensus 154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~-~~~~l~~~ 197 (198)
++|++|+++|++|++++++|+++++||+++|+++|+ ++.|+++.
T Consensus 203 a~G~is~~~n~~P~~~~~~~~~~~~gd~~~a~~l~~~~~~~l~~~ 247 (296)
T TIGR03249 203 VTSYSSAIFNFIPHIARAFYEALRRGDHATVGEIYKEFILPINEI 247 (296)
T ss_pred CCEEEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999977 58887653
No 13
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=100.00 E-value=8e-47 Score=312.62 Aligned_cols=190 Identities=24% Similarity=0.335 Sum_probs=176.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
.||+++||.+||+++++.+++++ |+|||+|++. +|+++++++++|+++|+|+++++||+|++++ ++++++||++|
T Consensus 44 tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~--~~~i~~~f~~v 120 (289)
T cd00951 44 TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAP--QEGLYAHVEAV 120 (289)
T ss_pred CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHH
Confidence 39999999999999999999998 8999999997 9999999999999999999999999999988 99999999999
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecC---hhhHHHHhhc
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGS---AGYLLSGLLV 152 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~---d~~~~~~l~~ 152 (198)
++++++||++||. +|.+++++++.+|++ +|||+|+|++ |..++.++++ ..+++|.||+|. |.++.+.+.+
T Consensus 121 ~~~~~~pi~lYn~---~g~~l~~~~l~~L~~~~pnivgiKds~~d~~~~~~~~~-~~~~~~~v~~G~~~~d~~~~~~l~~ 196 (289)
T cd00951 121 CKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFKDGVGDIELMRRIVA-KLGDRLLYLGGLPTAEVFALAYLAM 196 (289)
T ss_pred HhcCCCCEEEEeC---CCCCCCHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEeCCCcchHhHHHHHHC
Confidence 9999999999994 678999999999997 9999999999 9999888874 456789999996 6778899999
Q ss_pred CCCeEEecccccchHHHHHHHHHHHcCCHHHHHHH-HHHhhchhhc
Q psy9711 153 GCAGGINALSAVLGGPICELYDLAKAGKWEEAMKL-QHRLVKPDVT 197 (198)
Q Consensus 153 G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l-~~~~~~l~~~ 197 (198)
|++|++|+++|++|++++++|+++++||+++|+++ |+++.|+++.
T Consensus 197 Ga~G~is~~~n~~P~~~~~l~~~~~~gd~~~a~~~~~~~~~~~~~~ 242 (289)
T cd00951 197 GVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFFLPYVDI 242 (289)
T ss_pred CCCEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997 5668787653
No 14
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=1.7e-46 Score=309.21 Aligned_cols=186 Identities=26% Similarity=0.349 Sum_probs=174.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVAD 80 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~ 80 (198)
||+++||.+||+++++.+++.++ +|++||++.+++++++++++|+++|||+++++||+|++ ++ ++++++||++|++
T Consensus 44 GE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~--~~~i~~yf~~v~~ 120 (279)
T cd00953 44 GLGPSLSFQEKLELLKAYSDITD-KVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIP--EEWLIKYFTDISS 120 (279)
T ss_pred CCcccCCHHHHHHHHHHHHHHcC-CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCC--HHHHHHHHHHHHh
Confidence 99999999999999999999883 38999999999999999999999999999999999988 46 9999999999999
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
++|+++||+|.+||++++++++.+|++ +|||+|||++ |..++.++.+ . .++|.||+|.|.++++++..|++|+
T Consensus 121 --~lpv~iYn~P~~tg~~l~~~~l~~L~~~~p~vvgiK~s~~d~~~~~~~~~-~-~~~~~v~~G~d~~~~~~l~~Ga~G~ 196 (279)
T cd00953 121 --PYPTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDTNEDISHMLEYKR-L-VPDFKVYSGPDSLIFSALRSGLDGS 196 (279)
T ss_pred --cCCEEEEeCccccCCCCCHHHHHHHHhcCCCEEEEEeCccCHHHHHHHHH-h-CCCeEEEEccHHHHHHHHHcCCCeE
Confidence 899999999999999999999999995 7999999999 8999888763 3 3589999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+++++|++|++++++|++++ +++|+++|+++.++++.
T Consensus 197 i~~~~n~~P~~~~~l~~a~~---~~~a~~~q~~~~~l~~~ 233 (279)
T cd00953 197 VAAASNYLPEVFVKIKDHVA---IEDAFKLQFLINEVLDA 233 (279)
T ss_pred EechhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 89999999999998763
No 15
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=100.00 E-value=2.5e-46 Score=311.51 Aligned_cols=188 Identities=23% Similarity=0.310 Sum_probs=175.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+++ +++++++++++|+++|+|++++.||+|++++ ++++++||++|+
T Consensus 52 GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~--~~~i~~~f~~va 128 (303)
T PRK03620 52 GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYLTEAP--QEGLAAHVEAVC 128 (303)
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 8999999997 9999999999999999999999999999988 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecCh---hhHHHHhhcC
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA---GYLLSGLLVG 153 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d---~~~~~~l~~G 153 (198)
+++++||++||. +|.+++++++.+|+ ++|||+|||++ |..++.++++ ..+++|.||+|.| ..+.+++..|
T Consensus 129 ~~~~lpi~lYn~---~g~~l~~~~l~~L~~~~pni~giK~s~~d~~~~~~~~~-~~~~~f~vl~G~d~~e~~~~~~~~~G 204 (303)
T PRK03620 129 KSTDLGVIVYNR---DNAVLTADTLARLAERCPNLVGFKDGVGDIELMQRIVR-ALGDRLLYLGGLPTAEVFAAAYLALG 204 (303)
T ss_pred HhCCCCEEEEcC---CCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEeCCCcchhhHHHHHhCC
Confidence 999999999995 46899999999999 89999999999 8999988874 4568999999974 5667888999
Q ss_pred CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHH-Hhhchhh
Q psy9711 154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQH-RLVKPDV 196 (198)
Q Consensus 154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~-~~~~l~~ 196 (198)
++|++|+++|++|++++++|+++++||+++|+++|+ .+.|+++
T Consensus 205 ~~G~is~~an~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~~l~~ 248 (303)
T PRK03620 205 VPTYSSAVFNFVPEIALAFYRALRAGDHATVDRLLDDFFLPYVA 248 (303)
T ss_pred CCEEEecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 5788765
No 16
>PLN02417 dihydrodipicolinate synthase
Probab=100.00 E-value=1.4e-46 Score=309.77 Aligned_cols=181 Identities=25% Similarity=0.333 Sum_probs=169.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+||++||++++|+++++++++|+++|+|++++.||+|++++ ++++++||++|+
T Consensus 46 GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~--~~~i~~~f~~va 123 (280)
T PLN02417 46 GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS--QEGLIKHFETVL 123 (280)
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC--HHHHHHHHHHHH
Confidence 9999999999999999999998 899999999999999999999999999999999999999988 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHH-hhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSG-LLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~-l~~G~~G 156 (198)
+++ |+++||+|.+||++++++++.+|+++|||+|||++ | .++.+.+ +++|.||+|.|.+++++ +..|++|
T Consensus 124 ~~~--pi~lYn~P~~tg~~l~~~~l~~l~~~pni~giKdss~~-~~~~~~~----~~~~~v~~G~d~~~~~~~l~~Ga~G 196 (280)
T PLN02417 124 DMG--PTIIYNVPGRTGQDIPPEVIFKIAQHPNFAGVKECTGN-DRVKQYT----EKGILLWSGNDDECHDARWDYGADG 196 (280)
T ss_pred hhC--CEEEEEChhHhCcCCCHHHHHHHhcCCCEEEEEeCCCc-HHHHHHh----cCCeEEEEcccHHhhHHHHhCCCCE
Confidence 976 99999999999999999999999999999999998 8 7766533 36899999999999898 8999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++|+++|++|+.++++|+++++ +++|+++.|+++.
T Consensus 197 ~is~~~n~~P~~~~~l~~a~~~------~~l~~~l~~l~~~ 231 (280)
T PLN02417 197 VISVTSNLVPGLMHKLMFAGKN------KELNDKLLPLMDW 231 (280)
T ss_pred EEecHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 9999999999999999999854 7888988888763
No 17
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=99.86 E-value=1.3e-20 Score=147.00 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=119.4
Q ss_pred HHHHHHHHhc---CCeEEEeCCCCc----HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CC
Q psy9711 14 KIISTLRQET---KKTIIAGTYCES----TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PI 84 (198)
Q Consensus 14 ~l~~~~~~~~---~~pvi~gv~~~~----~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~ 84 (198)
++++.+++.. ++|+++|+++.+ ++++++++++|+++|+|++++.+|+|+.++.+++++.+||+++++++ ++
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 114 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGL 114 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCc
Confidence 5677777766 499999999999 99999999999999999999999999877534899999999999995 89
Q ss_pred CEEEEeCCCCcccccCHHHHHHH---HcCCCEEEEeeC-C-------HHHHHHHHhhcCC--CCeEEEecCh--hhHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKL---AHHENIRGVKDT-D-------NIKLANMANQTKD--LNFSVFAGSA--GYLLSG 149 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L---~~~p~i~giK~s-d-------~~~~~~~~~~~~~--~~~~v~~G~d--~~~~~~ 149 (198)
|+++||+|..+ ++++.+.++ ++.+++.++|++ . ...+.++++ ..+ -+|.++.|.+ ..+.++
T Consensus 115 pv~iy~~p~~~---~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~-~~~~~~~v~~~gg~~~~~~~~~~ 190 (201)
T cd00945 115 PLKVILETRGL---KTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKE-AVGGRVGVKAAGGIKTLEDALAA 190 (201)
T ss_pred eEEEEEECCCC---CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHH-hcccCCcEEEECCCCCHHHHHHH
Confidence 99999999876 677777765 457999999998 3 466666653 332 2677888888 778899
Q ss_pred hhcCCCeEEec
Q psy9711 150 LLVGCAGGINA 160 (198)
Q Consensus 150 l~~G~~G~is~ 160 (198)
+..|++|++.+
T Consensus 191 ~~~Ga~g~~~g 201 (201)
T cd00945 191 IEAGADGIGTS 201 (201)
T ss_pred HHhccceeecC
Confidence 99999999864
No 18
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=99.65 E-value=4.1e-16 Score=132.87 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=115.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH-----
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL----- 70 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~----- 70 (198)
+||+..++.+||.++++.+++.+ +.+++++..+.+++++++++++|+++|+|++|+.+|+|...+ .+.
T Consensus 169 ~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~--~~~l~~~~ 246 (367)
T cd08205 169 LADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEAGANALLINPNLVGLDA--LRALAEDP 246 (367)
T ss_pred ccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEEecccccccH--HHHHHhcC
Confidence 58999999999999999999877 445544444446799999999999999999999999998544 443
Q ss_pred ---HHHHHHH-------------------HHccCCCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC-------
Q psy9711 71 ---IYEHFIS-------------------VADNSPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT------- 119 (198)
Q Consensus 71 ---i~~y~~~-------------------i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s------- 119 (198)
+..|+.. +++.++.|+++||+|. +++.++++.+.++++ .+++.++|.+
T Consensus 247 ~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~~~~-gk~~~~~~~~~~la~~~~~~~~~iK~~~Pv~sgG 325 (367)
T cd08205 247 DLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFPGPG-GRFPFSREECLAIARACRRPLGGIKPALPVPSGG 325 (367)
T ss_pred CCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccCCCc-cCcCCCHHHHHHHHHHHhCccccCCCceeeccCC
Confidence 4444555 8888999999999997 589999999999996 6999999996
Q ss_pred -CHHHHHHHHhhcCCCCeEEEecChhh
Q psy9711 120 -DNIKLANMANQTKDLNFSVFAGSAGY 145 (198)
Q Consensus 120 -d~~~~~~~~~~~~~~~~~v~~G~d~~ 145 (198)
++.++.++++ ..++++.++.|.+-+
T Consensus 326 ~~~~~v~~l~~-~~G~dv~~~~GGgi~ 351 (367)
T cd08205 326 MHPGRVPELYR-DYGPDVILLAGGGIL 351 (367)
T ss_pred CCHHHHHHHHH-HhCCcEEEEcCchhc
Confidence 4577888874 567899999887753
No 19
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=99.48 E-value=3.3e-13 Score=114.76 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=117.8
Q ss_pred CCccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-----CCCCCHH
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-----QKKMTED 69 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-----~~~~~~~ 69 (198)
+||...++.+||.+.+..+++.+ ++++++++++. +.+.+++++.|+++|++++|+.++.|. ... ++
T Consensus 164 l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nita~-~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~--~~ 240 (364)
T cd08210 164 LADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVTGP-PTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELA--ED 240 (364)
T ss_pred ccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecCCC-HHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHH--hc
Confidence 47899999999999999888887 68899999986 669999999999999999999999886 333 33
Q ss_pred HH----HHH-------------------HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC-----
Q psy9711 70 LI----YEH-------------------FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT----- 119 (198)
Q Consensus 70 ~i----~~y-------------------~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s----- 119 (198)
.. ..| |..+++.++.|+++||+|. .++.++++.+.++++ .+++.++|.+
T Consensus 241 ~~~l~i~aHra~~ga~~~~~~~is~~~~~~kl~RlaGad~~~~~~~~-g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv~s 319 (364)
T cd08210 241 FDFLPILAHPAFAGAFVSSGDGISHALLFGTLFRLAGADAVIFPNYG-GRFGFSREECQAIADACRRPMGGLKPILPAPG 319 (364)
T ss_pred CCCcEEEEccccccccccCCCcccHHHHHHHHHHHhCCCEEEeCCCc-CCccCCHHHHHHHHHHhcCCccccCCCcCcCC
Confidence 33 344 8999999999999999996 589999999999996 6899999996
Q ss_pred ---CHHHHHHHHhhcCCCCeEEEecChhh
Q psy9711 120 ---DNIKLANMANQTKDLNFSVFAGSAGY 145 (198)
Q Consensus 120 ---d~~~~~~~~~~~~~~~~~v~~G~d~~ 145 (198)
++.++.++++ ..++++.++.|.+-+
T Consensus 320 gG~~~~~v~~l~~-~~G~Dvil~aGGgi~ 347 (364)
T cd08210 320 GGMSVERAPEMVE-LYGPDVMLLIGGSLL 347 (364)
T ss_pred CCcCHHHHHHHHH-HcCCcEEEEcccccc
Confidence 4577888874 567889888887643
No 20
>PF06187 DUF993: Protein of unknown function (DUF993); InterPro: IPR009334 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 4DNH_A.
Probab=99.37 E-value=1.6e-11 Score=101.07 Aligned_cols=190 Identities=14% Similarity=0.143 Sum_probs=129.6
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEEEeCCCCc--------HHHH----HHHHHHHHhcCCCEEEEcCCCCcCCCCCH
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTIIAGTYCES--------TRAT----IDLTQKAAKAGANAALILCPYYFQKKMTE 68 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~--------~~~~----i~~a~~a~~~Gad~v~~~~P~y~~~~~~~ 68 (198)
+.-|+...-+++++...+++ +..|.+|+|+.. .++. .++....++.|...+++.+-...+...++
T Consensus 84 GMGLDW~~a~ELIrRs~aeA~~~g~~ia~GaGTD~L~~~~~~sld~V~~AY~eQ~~~ve~~Gg~~ILMASRaLA~~A~~p 163 (382)
T PF06187_consen 84 GMGLDWAAARELIRRSAAEARAVGARIACGAGTDQLDPAPAASLDDVIAAYEEQLEAVEAAGGRVILMASRALAAVARSP 163 (382)
T ss_dssp TTTB-HHHHHHHHHHHHHHHHTSS--EEEEE--TTS---TT--HHHHHHHHHHHHHHHHHTT--EEE---HHHHHH--SH
T ss_pred cCCCChHHHHHHHHHHHHHHHhcCCcEEeecCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEeehHHHHHhhCCH
Confidence 34578889999999999998 667888998443 2332 46777788999999888876665422359
Q ss_pred HHHHHHHHHHHccCCCCEEEEeC-----CCCccc------ccCHHHHHHHH-cC-CCEEEEeeC--CHHHHHHHHhhcCC
Q psy9711 69 DLIYEHFISVADNSPIPVIIYNN-----TFVTNI------DISVDTLVKLA-HH-ENIRGVKDT--DNIKLANMANQTKD 133 (198)
Q Consensus 69 ~~i~~y~~~i~~~~~~pi~lYn~-----P~~tg~------~l~~~~l~~L~-~~-p~i~giK~s--d~~~~~~~~~~~~~ 133 (198)
++..+-|..|.++++-|||++.. |...|+ +-..+++.+|. ++ +.|-|||.| |..+-..++ +..+
T Consensus 164 ~DY~~VY~~lL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~lI~~~~~kVdGIKiSLLD~~~Ei~lR-rrLP 242 (382)
T PF06187_consen 164 DDYLRVYDRLLSQADEPVILHWLGDMFDPALAGYWGSADLDAAMDTVLELIAAHADKVDGIKISLLDAEKEIALR-RRLP 242 (382)
T ss_dssp HHHHHHHHHHHHH-SS-EEEEEE-TTT-GGGTTTTS-SSHHHHHHHHHHHHHHTGGGEEEEEEES--HHHHHHHH-TS--
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccccCcccccccCCCcHHHHHHHHHHHHHhChhhcCeeEecccCcHHHHHHH-HhCC
Confidence 99999999999999999999985 666666 23467888887 45 699999999 888777776 4578
Q ss_pred CCeEEEecChhhHHHHhhcC-----CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711 134 LNFSVFAGSAGYLLSGLLVG-----CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV 196 (198)
Q Consensus 134 ~~~~v~~G~d~~~~~~l~~G-----~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~ 196 (198)
+++++|+|+|..+ +.+..| .+.....+..+.|... .-.+++.+||.++.+++.+...||.+
T Consensus 243 ~gVr~YTGDDFnY-peLI~GD~~g~S~ALLGIFdaiAPaAs-aAl~~Ld~gd~~~f~~il~pTvpLsR 308 (382)
T PF06187_consen 243 EGVRMYTGDDFNY-PELIAGDGQGHSHALLGIFDAIAPAAS-AALAALDAGDTAGFRAILDPTVPLSR 308 (382)
T ss_dssp TT-EEEE--TTTH-HHHHH--SS---EEEESHHHHTHHHHH-HHHHHHHTT-HHHHHHHHTTHHHHHH
T ss_pred ccceeecCCCcCc-HHHhcCCCCCccHHHhhcchhhchHHH-HHHHHHhCCCHHHHHHHhccchHhHH
Confidence 9999999999876 446667 6777777777888776 45577888999999998877776644
No 21
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=99.17 E-value=4.7e-10 Score=90.85 Aligned_cols=95 Identities=20% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCccCCCCHHHHHHHHHHHHHhc-C---CeEEEe-----CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQET-K---KTIIAG-----TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI 71 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~-~---~pvi~g-----v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i 71 (198)
+||...+|.+|+.+.++.++++. + ++|+++ ++..++++++++++.++++|||++++.+|. + .
T Consensus 115 ~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~----~--~--- 185 (243)
T cd00377 115 HGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK----D--P--- 185 (243)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC----C--H---
Confidence 47889999999999999999987 4 788999 665789999999999999999999998886 3 4
Q ss_pred HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
++++.++++.++|+++|+.|... .++++.+.+|
T Consensus 186 -~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l 218 (243)
T cd00377 186 -EEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL 218 (243)
T ss_pred -HHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC
Confidence 78888999999999999988532 5788888887
No 22
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=98.62 E-value=8.6e-07 Score=73.34 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=75.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhc---CCeEEEe----CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET---KKTIIAG----TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH 74 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~---~~pvi~g----v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y 74 (198)
||...++.+|+.+.++.++++. +++|++. +...++++++++++.++++|||++++. +...+ .+++.++
T Consensus 127 ~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~---~~~~~--~~ei~~~ 201 (285)
T TIGR02320 127 VAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH---SRKKD--PDEILEF 201 (285)
T ss_pred CcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec---CCCCC--HHHHHHH
Confidence 4667899999999999999984 7899999 555679999999999999999999996 22244 9999999
Q ss_pred HHHHHccC-CCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 75 FISVADNS-PIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 75 ~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
++.+.... ++|+++ + |..+ ..++.+.+.+|
T Consensus 202 ~~~~~~~~p~~pl~~-~-~~~~-~~~~~~eL~~l 232 (285)
T TIGR02320 202 ARRFRNHYPRTPLVI-V-PTSY-YTTPTDEFRDA 232 (285)
T ss_pred HHHhhhhCCCCCEEE-e-cCCC-CCCCHHHHHHc
Confidence 99986333 578864 2 4222 23466666655
No 23
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.43 E-value=4.3e-05 Score=64.74 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE---cCCCCcCC-CCCH-HHHHHHHHHHHc
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALI---LCPYYFQK-KMTE-DLIYEHFISVAD 80 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~---~~P~y~~~-~~~~-~~i~~y~~~i~~ 80 (198)
....+++.+.++.+.+..++||+++++..+.++..+.++.++++|+|++.+ .||.-... ..+. +.+.+..+.|.+
T Consensus 83 n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~ 162 (334)
T PRK07565 83 YVGPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKS 162 (334)
T ss_pred CcCHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHh
Confidence 356788999888776655899999999999999999999999999999999 45542211 1112 336677788888
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--------CHH--------------------HHHHHHhhcC
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--------DNI--------------------KLANMANQTK 132 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--------d~~--------------------~~~~~~~~~~ 132 (198)
.+++||++.-.|..+ +...+.+.++--++.||-.. |.. +....+++..
T Consensus 163 ~~~iPV~vKl~p~~~----~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~ 238 (334)
T PRK07565 163 AVSIPVAVKLSPYFS----NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV 238 (334)
T ss_pred ccCCcEEEEeCCCch----hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc
Confidence 889999999877432 23334443322223333221 211 1111111212
Q ss_pred CCCeEEE-ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 133 DLNFSVF-AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 133 ~~~~~v~-~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
++.|+ +| -. ......+.+|++++..+.+.+. |+.+.++.+.+
T Consensus 239 --~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 239 --GADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred --CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 34443 22 22 2356778899999998888765 66655555443
No 24
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.69 E-value=0.015 Score=48.38 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE--cCCCCcCC----CCCHHHHHHHHHHHHcc
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALI--LCPYYFQK----KMTEDLIYEHFISVADN 81 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~--~~P~y~~~----~~~~~~i~~y~~~i~~~ 81 (198)
..++..+-++...+..+.|+++.+...+.++-.+.++.++++|+|++-+ ..|..... ..+++.+.+..+.+-+.
T Consensus 73 g~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 73 GVEAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred CHHHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc
Confidence 3455555444443323789999999999999999999999999999977 35654321 12477788888999888
Q ss_pred CCCCEEEEeCCCCcccccCHHHHHH-HHcCCCEEEEee-------------------------C---C----HHHHHHHH
Q psy9711 82 SPIPVIIYNNTFVTNIDISVDTLVK-LAHHENIRGVKD-------------------------T---D----NIKLANMA 128 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~~l~~-L~~~p~i~giK~-------------------------s---d----~~~~~~~~ 128 (198)
+++||++=-.|..+ ....+.+ +.+. .+.++.. + . +..+.++.
T Consensus 153 ~~~Pv~vKl~~~~~----~~~~~a~~~~~~-G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~ 227 (296)
T cd04740 153 TDVPVIVKLTPNVT----DIVEIARAAEEA-GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY 227 (296)
T ss_pred cCCCEEEEeCCCch----hHHHHHHHHHHc-CCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH
Confidence 89999985444321 1222333 3332 1222211 0 0 12223332
Q ss_pred hhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecccccc-hHHHHHHHHHH
Q psy9711 129 NQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAVL-GGPICELYDLA 176 (198)
Q Consensus 129 ~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~~-P~~~~~l~~~~ 176 (198)
+.. ++.|+ .|.. ......+..|++++..+.+.+. |..+.++.+-+
T Consensus 228 -~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l 277 (296)
T cd04740 228 -KAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGL 277 (296)
T ss_pred -Hhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHH
Confidence 222 23333 3322 3566778899999998888665 77666655433
No 25
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.58 E-value=0.019 Score=47.85 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC-CCEEEEc--CCCC----cCCCCCHHHHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG-ANAALIL--CPYY----FQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G-ad~v~~~--~P~y----~~~~~~~~~i~~y~~~i~ 79 (198)
...++..+-+....+..+.|+++.+++.+.++-.+.++.++++| +|++-+- .|.. .....+++.+.+..+.|-
T Consensus 74 ~g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 74 PGVDAFIEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred cCHHHHHHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 33445444444333223789999999999999999999999999 9999772 3321 111124788888889998
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHH-HHHcC--CCEE------EEee----------------C-------CHHHHHHH
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLV-KLAHH--ENIR------GVKD----------------T-------DNIKLANM 127 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~-~L~~~--p~i~------giK~----------------s-------d~~~~~~~ 127 (198)
+.+++||++==.|..+ ....+. .+.+. ..|+ |.+. + ....+.++
T Consensus 154 ~~~~~pv~vKl~~~~~----~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i 229 (301)
T PRK07259 154 EVVKVPVIVKLTPNVT----DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQV 229 (301)
T ss_pred HhcCCCEEEEcCCCch----hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHH
Confidence 8889999985554321 222233 33332 2232 2110 0 11223333
Q ss_pred HhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccc-hHHHHHHHHHH
Q psy9711 128 ANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVL-GGPICELYDLA 176 (198)
Q Consensus 128 ~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~-P~~~~~l~~~~ 176 (198)
. +..+-.+....|.. ......+..|++++..+.+.+. |.++.++.+..
T Consensus 230 ~-~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 230 Y-QAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred H-HhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 3 22222232223322 2456777899999988888666 77776665543
No 26
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.44 E-value=0.023 Score=47.01 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=100.3
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC---CCHHHHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK---MTEDLIYEHFISV 78 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~---~~~~~i~~y~~~i 78 (198)
.....++..+-++...+.. +.|+++.+...+.++..+.++.+++.|+|++-+- .|...... .+++.+.+..+++
T Consensus 78 ~~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~v 157 (289)
T cd02810 78 PNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAV 157 (289)
T ss_pred CCcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHH
Confidence 3455666666666555542 7999999999899999999999999999999874 55532210 1367778888888
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHH----HHHHcCCCEEEEeeC--------------------------------CHH
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTL----VKLAHHENIRGVKDT--------------------------------DNI 122 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~p~i~giK~s--------------------------------d~~ 122 (198)
.+.+++||++==.|. ++.+.. ..+.+. .+.++.-+ .+.
T Consensus 158 r~~~~~pv~vKl~~~-----~~~~~~~~~a~~l~~~-Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~ 231 (289)
T cd02810 158 KAAVDIPLLVKLSPY-----FDLEDIVELAKAAERA-GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALR 231 (289)
T ss_pred HHccCCCEEEEeCCC-----CCHHHHHHHHHHHHHc-CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHH
Confidence 888899999854442 343333 333232 23333221 011
Q ss_pred HHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHH
Q psy9711 123 KLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAVL--GGPICELY 173 (198)
Q Consensus 123 ~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~ 173 (198)
.+.++. +..++++.|+ .|.. ......+..|++++..+.+.+. |.++.++.
T Consensus 232 ~v~~i~-~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 232 WVARLA-ARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHH-HhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHh
Confidence 223332 2332244444 3333 2466778899999988887654 77666553
No 27
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.44 E-value=0.048 Score=46.11 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC-cCCCC----CHHHHHHHHHHHHc
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY-FQKKM----TEDLIYEHFISVAD 80 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y-~~~~~----~~~~i~~y~~~i~~ 80 (198)
+...+...+-++.+.+..+.||++.+...+.++-.+.++.++++|+|++-+--... ..+.. .++.+.+..+.+.+
T Consensus 81 n~g~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~ 160 (325)
T cd04739 81 NLGPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKS 160 (325)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHh
Confidence 34456666655554433378999999888899999999999999999997743211 11110 12446677788888
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--------CH---------------------HHHHHHHhh
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--------DN---------------------IKLANMANQ 130 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--------d~---------------------~~~~~~~~~ 130 (198)
++++||++==.|..+ ....+.+.+ +. ++.|+-.+ |. ..+.++. +
T Consensus 161 ~~~iPv~vKl~p~~~----~~~~~a~~l~~~-Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~-~ 234 (325)
T cd04739 161 AVTIPVAVKLSPFFS----ALAHMAKQLDAA-GADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILS-G 234 (325)
T ss_pred ccCCCEEEEcCCCcc----CHHHHHHHHHHc-CCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHH-c
Confidence 889999987655422 233333333 32 22222211 11 1111222 2
Q ss_pred cCCCCeEEE-e-cCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 131 TKDLNFSVF-A-GSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 131 ~~~~~~~v~-~-G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
. .++.|+ + |-. ......+.+|++++..+++.+. |..+.+|.+.+
T Consensus 235 ~--~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 235 R--VKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred c--cCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence 2 234444 2 222 2356777899999998888765 66665555544
No 28
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.23 E-value=0.075 Score=44.34 Aligned_cols=161 Identities=21% Similarity=0.252 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEE--cCCCCc--C-----CCCCHHHHHHHHHH
Q psy9711 9 EEEKLKIISTLRQET-KKTIIAGTYCE-STRATIDLTQKAAKAGANAALI--LCPYYF--Q-----KKMTEDLIYEHFIS 77 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~-~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~--~~P~y~--~-----~~~~~~~i~~y~~~ 77 (198)
.++..+-++...+.. ..|+++.+.+. +.++-.+.++.+++.|+|++-+ ..|... + ...+++.+.+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~ 162 (299)
T cd02940 83 LEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRW 162 (299)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHH
Confidence 455555555444444 58999999776 8999999999999999999887 344431 0 00247888888999
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHHHH-cC--CCEE---------EE-------------ee-----C---C----
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HH--ENIR---------GV-------------KD-----T---D---- 120 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~--p~i~---------gi-------------K~-----s---d---- 120 (198)
+-+.+++||++==.|..+ ....+.+.+ +. ..|+ ++ +. | +
T Consensus 163 v~~~~~~Pv~vKl~~~~~----~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~ 238 (299)
T cd02940 163 VREAVKIPVIAKLTPNIT----DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIA 238 (299)
T ss_pred HHHhcCCCeEEECCCCch----hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHH
Confidence 988889999987555322 233444433 32 3333 11 00 0 1
Q ss_pred HHHHHHHHhhcCCCCeEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHH
Q psy9711 121 NIKLANMANQTKDLNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD 174 (198)
Q Consensus 121 ~~~~~~~~~~~~~~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~ 174 (198)
+..+.++. +..++++.|+. | -. ......+.+|++++..+++.+. |..+.+|.+
T Consensus 239 l~~v~~~~-~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 239 LRAVSQIA-RAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred HHHHHHHH-HhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhh
Confidence 23334433 33334566553 2 11 2456778899999999988775 666666543
No 29
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.09 E-value=0.11 Score=42.55 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeCCCCc-HHHHH-HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 6 KSTEEEKLKIISTLRQET-KKTIIAGTYCES-TRATI-DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~-~~~~i-~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
-+|.+.-.++++.+.+.- ++|++.=...+- ...-+ +..+++++.|+|++++.-= +-+--+.+...+++.
T Consensus 75 g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--------P~ee~~~~~~~~~~~ 146 (265)
T COG0159 75 GVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--------PPEESDELLKAAEKH 146 (265)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--------ChHHHHHHHHHHHHc
Confidence 367788889999998776 899876554433 33334 4589999999999998521 222234666777788
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHcCC----------CEEEEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hh
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAHHE----------NIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GY 145 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p----------~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~ 145 (198)
++-.+..-.|. -+.+.++++++.. .+.|.+.. +..+..+.+++.. +..+..|.+ ++
T Consensus 147 gi~~I~lvaPt-----t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~ 219 (265)
T COG0159 147 GIDPIFLVAPT-----TPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQ 219 (265)
T ss_pred CCcEEEEeCCC-----CCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHH
Confidence 98888877774 4578888888643 45555555 2233333332333 556676655 35
Q ss_pred HHHHhhcCCCeEEeccc
Q psy9711 146 LLSGLLVGCAGGINALS 162 (198)
Q Consensus 146 ~~~~l~~G~~G~is~~~ 162 (198)
....... +||++.|++
T Consensus 220 ~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 220 AAQVAEA-ADGVIVGSA 235 (265)
T ss_pred HHHHHHh-CCeEEEcHH
Confidence 5566677 999999975
No 30
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.04 E-value=0.14 Score=44.81 Aligned_cols=164 Identities=15% Similarity=0.159 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc--CCCCc-C------CCCCHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGTYCE-STRATIDLTQKAAKAGANAALIL--CPYYF-Q------KKMTEDLIYEHFI 76 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~--~P~y~-~------~~~~~~~i~~y~~ 76 (198)
..+++.+.++...+.. +.|+++++.+. +.++-.+.++.+++.|+|++-+- .|... . ...+++.+.+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~ 161 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTR 161 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHH
Confidence 3455556565555555 68999999887 78889999999999999998864 45411 1 0124788888889
Q ss_pred HHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEe------------------------------eC-C-----
Q psy9711 77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK------------------------------DT-D----- 120 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK------------------------------~s-d----- 120 (198)
.+.+.+++||++==.|..+ +...+.+.++-.++.|+- .| .
T Consensus 162 ~v~~~~~~Pv~vKl~p~~~----~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~ 237 (420)
T PRK08318 162 WVKRGSRLPVIVKLTPNIT----DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPI 237 (420)
T ss_pred HHHhccCCcEEEEcCCCcc----cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHH
Confidence 9988889999987666432 233444433212222222 11 1
Q ss_pred -HHHHHHHHhhcCC-CCeEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 121 -NIKLANMANQTKD-LNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 121 -~~~~~~~~~~~~~-~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
+..+.++. +..+ +++.|+. | -. ......+.+|++++..+++.+. |..+.+|.+-+
T Consensus 238 ~l~~v~~~~-~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 238 ALNMVAEIA-RDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred HHHHHHHHH-hccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHH
Confidence 12222322 2221 2455552 2 11 2356678899999999999887 76666665543
No 31
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.016 Score=47.17 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=92.3
Q ss_pred CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~ 93 (198)
++|+|+..++.+ -...+-..+.|..+|+|+|.+.-...... +.+.++-+.++.+.+ ++|+++.-.|.
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~---e~~~i~~~~~v~~~a~~~Gmp~v~~~YpR 153 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET---EREMIENISQVVEDAHELGMPLVAWAYPR 153 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc---hHHHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 789999887763 13334556778899999999975554433 555555555555443 89999988886
Q ss_pred Cccc----ccCHHHHH---HHH-cC-CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh--------hHHHHhhcCCC
Q psy9711 94 VTNI----DISVDTLV---KLA-HH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG--------YLLSGLLVGCA 155 (198)
Q Consensus 94 ~tg~----~l~~~~l~---~L~-~~-p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~--------~~~~~l~~G~~ 155 (198)
..+. ..+++.+. ||+ ++ -.|+=.|.+ |.+.|++... ..+-.+.+-.|... +...++..|+.
T Consensus 154 g~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~-~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~ 232 (265)
T COG1830 154 GPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVA-ACGVPVVIAGGPKTETEREFLEMVTAAIEAGAM 232 (265)
T ss_pred CCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHH-hCCCCEEEeCCCCCCChHHHHHHHHHHHHccCc
Confidence 5555 56777665 676 55 478888888 9999999884 45544444333221 23456788999
Q ss_pred eEEecccccc
Q psy9711 156 GGINALSAVL 165 (198)
Q Consensus 156 G~is~~~n~~ 165 (198)
|.+.|= |+|
T Consensus 233 G~~~GR-Nif 241 (265)
T COG1830 233 GVAVGR-NIF 241 (265)
T ss_pred chhhhh-hhh
Confidence 998774 443
No 32
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.94 E-value=0.042 Score=45.11 Aligned_cols=161 Identities=11% Similarity=0.055 Sum_probs=98.4
Q ss_pred CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~ 93 (198)
++|+|+.+++.+ .+..+--.+.|.++|||+|.+.-..- ... +.+.++.+.+|++.+ ++|++. -.|.
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~G-s~~--E~~~l~~l~~v~~ea~~~G~Plla-~~pr 149 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIG-SEY--EHQSIKNIIQLVDAGLRYGMPVMA-VTAV 149 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHH--HHHHHHHHHHHHHHHHHhCCcEEE-EecC
Confidence 689999887632 24445557889999999999874332 222 777777788777665 799998 4464
Q ss_pred CcccccCHHH---HHHHH-cC-CCEEEEeeCCHHHHHHHHhhcCCCCeEEEecCh---h----hHHHHhhcCCCeEEecc
Q psy9711 94 VTNIDISVDT---LVKLA-HH-ENIRGVKDTDNIKLANMANQTKDLNFSVFAGSA---G----YLLSGLLVGCAGGINAL 161 (198)
Q Consensus 94 ~tg~~l~~~~---l~~L~-~~-p~i~giK~sd~~~~~~~~~~~~~~~~~v~~G~d---~----~~~~~l~~G~~G~is~~ 161 (198)
.....=+++. ..|++ ++ ..|+=++.+. +.+.++.. ..+-.+.+-.|.- . +...++..|+.|+..|=
T Consensus 150 G~~~~~~~~~ia~aaRiaaELGADiVK~~y~~-~~f~~vv~-a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GR 227 (264)
T PRK08227 150 GKDMVRDARYFSLATRIAAEMGAQIIKTYYVE-EGFERITA-GCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGR 227 (264)
T ss_pred CCCcCchHHHHHHHHHHHHHHcCCEEecCCCH-HHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeech
Confidence 3222223333 34666 55 3777777764 55666663 3434443333422 1 23457889999988764
Q ss_pred cccc----hHHHHHHHHHHHcC--CHHHHHHHHHHh
Q psy9711 162 SAVL----GGPICELYDLAKAG--KWEEAMKLQHRL 191 (198)
Q Consensus 162 ~n~~----P~~~~~l~~~~~~g--d~~~A~~l~~~~ 191 (198)
|+| |..+.+-..++-.+ ..++|.++++++
T Consensus 228 -NIfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~~~ 262 (264)
T PRK08227 228 -NIFQSEHPVAMIKAVHAVVHENETAKEAYELYLSE 262 (264)
T ss_pred -hhhccCCHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 665 44444444443323 578888887664
No 33
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.90 E-value=0.014 Score=47.19 Aligned_cols=89 Identities=24% Similarity=0.205 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCeEEEeCCC-----CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET---KKTIIAGTYC-----ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~-----~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
..++.+|..+=++.++++. +.-|++=+-+ .+.+++|++++.+.++|||++++..+ . +.+++.++-+
T Consensus 115 ~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~----~--~~~~i~~~~~ 188 (238)
T PF13714_consen 115 QLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGL----Q--SEEEIERIVK 188 (238)
T ss_dssp -B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTS----S--SHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCC----C--CHHHHHHHHH
Confidence 3458899999999999887 5667776544 46799999999999999999998766 2 2666555555
Q ss_pred HHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
++ +.|+.+-..|. .++.+.+.+|
T Consensus 189 ~~----~~Pl~v~~~~~----~~~~~eL~~l 211 (238)
T PF13714_consen 189 AV----DGPLNVNPGPG----TLSAEELAEL 211 (238)
T ss_dssp HH----SSEEEEETTSS----SS-HHHHHHT
T ss_pred hc----CCCEEEEcCCC----CCCHHHHHHC
Confidence 44 58877655332 3787877777
No 34
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.84 E-value=0.24 Score=41.71 Aligned_cols=153 Identities=17% Similarity=0.165 Sum_probs=94.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE--cCCC------CcCC--CCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALI--LCPY------YFQK--KMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~--~~P~------y~~~--~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
..|+++++.+++.++..+.++.++++|+|++=+ ..|. |... -..++-+.+-.+.|-+++++||.+.-..+
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g 141 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIG 141 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcc
Confidence 789999999999999999999999999999966 3553 1110 01256666777778778899999876433
Q ss_pred CcccccCH-HHHHHHHcC--CCE--EEE-ee-----C-CHHHHHHHHhhcCCCCeEEE-ecC-h--hhHHHHh-hcCCCe
Q psy9711 94 VTNIDISV-DTLVKLAHH--ENI--RGV-KD-----T-DNIKLANMANQTKDLNFSVF-AGS-A--GYLLSGL-LVGCAG 156 (198)
Q Consensus 94 ~tg~~l~~-~~l~~L~~~--p~i--~gi-K~-----s-d~~~~~~~~~~~~~~~~~v~-~G~-d--~~~~~~l-~~G~~G 156 (198)
......+. +...+|.+. ..| .|- +. . ++..+.++. +..+ +.|+ +|. . ......+ ..|++|
T Consensus 142 ~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~-~~~~--ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 142 WDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVK-QAVR--IPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred cCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHH-HcCC--CcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 22222223 444445443 222 221 11 1 444444444 3332 3333 332 1 2345556 478999
Q ss_pred EEeccccc-chHHHHHHHHHHHcC
Q psy9711 157 GINALSAV-LGGPICELYDLAKAG 179 (198)
Q Consensus 157 ~is~~~n~-~P~~~~~l~~~~~~g 179 (198)
++.|-+.+ -|.++.++-+.+..|
T Consensus 219 VmigR~~l~~P~l~~~~~~~~~~~ 242 (319)
T TIGR00737 219 VMIGRGALGNPWLFRQIEQYLTTG 242 (319)
T ss_pred EEEChhhhhCChHHHHHHHHHhCC
Confidence 99998765 588887776666555
No 35
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.68 E-value=0.043 Score=45.70 Aligned_cols=89 Identities=20% Similarity=0.186 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHhc-C--CeEEEeCC---CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 7 STEEEKLKIISTLRQET-K--KTIIAGTY---CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv~---~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.+.+|..+=++.++++. + +-|++=+- ....+++|++++.++++|||++++..|. +.+++. .+++
T Consensus 130 v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~------~~~~i~----~~~~ 199 (292)
T PRK11320 130 VSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT------ELEMYR----RFAD 199 (292)
T ss_pred cCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC------CHHHHH----HHHH
Confidence 58889999999998876 3 34444432 2358999999999999999999996542 255555 4555
Q ss_pred cCCCCEEE--EeCCCCcccccCHHHHHHH
Q psy9711 81 NSPIPVII--YNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 81 ~~~~pi~l--Yn~P~~tg~~l~~~~l~~L 107 (198)
+.+.|++. ...|. + -.++.+.+.+|
T Consensus 200 ~~~~Pl~~n~~~~~~-~-p~~s~~~L~~l 226 (292)
T PRK11320 200 AVKVPILANITEFGA-T-PLFTTEELASA 226 (292)
T ss_pred hcCCCEEEEeccCCC-C-CCCCHHHHHHc
Confidence 55788744 22221 1 23566666665
No 36
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.52 E-value=0.024 Score=45.89 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCC------------------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYC------------------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~------------------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
|..+.++.++++ +++|++.++. .+.++++++++.++++|||++++-.+ + .+++
T Consensus 113 ~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-----~--~e~~- 183 (240)
T cd06556 113 WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV-----P--VELA- 183 (240)
T ss_pred HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC-----C--HHHH-
Confidence 444555666544 7999999886 24679999999999999999998533 2 4444
Q ss_pred HHHHHHHccCCCCEEEEeCCC-CcccccCHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTF-VTNIDISVDTLV 105 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~-~tg~~l~~~~l~ 105 (198)
+.++++.++|++..=.|. ..|..+....+.
T Consensus 184 ---~~i~~~~~~P~~~~gag~~~dgq~lv~~d~l 214 (240)
T cd06556 184 ---KQITEALAIPLAGIGAGSGTDGQFLVLADAF 214 (240)
T ss_pred ---HHHHHhCCCCEEEEecCcCCCceEEeHHhhh
Confidence 456667889987644433 234445544443
No 37
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.51 E-value=0.23 Score=39.52 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHhc-CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 6 KSTEEEKLKIISTLRQET-KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+|+.+.-.+.++...+.. +.| +++|+|+-.+.+ .++.|.++|++.++ +|.+ .+++.++ |...+
T Consensus 45 t~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~---~~~~a~~aGA~Fiv--sP~~------~~~v~~~----~~~~~ 109 (213)
T PRK06552 45 TYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAV---TARLAILAGAQFIV--SPSF------NRETAKI----CNLYQ 109 (213)
T ss_pred ECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHH----HHHcC
Confidence 345556667777777665 333 889999876655 56778899999877 4543 5667776 44556
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEee-C--CHHHHHHHHhhcCCCCeE--EEecCh-hhHHHHhhcCCCe
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKD-T--DNIKLANMANQTKDLNFS--VFAGSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~-s--d~~~~~~~~~~~~~~~~~--v~~G~d-~~~~~~l~~G~~G 156 (198)
+|++ | |. .++..+.+..+ -..++++=- + .+..+..+. ... +++. ...|-. +.+...+..|+++
T Consensus 110 i~~i----P---G~-~T~~E~~~A~~~Gad~vklFPa~~~G~~~ik~l~-~~~-p~ip~~atGGI~~~N~~~~l~aGa~~ 179 (213)
T PRK06552 110 IPYL----P---GC-MTVTEIVTALEAGSEIVKLFPGSTLGPSFIKAIK-GPL-PQVNVMVTGGVNLDNVKDWFAAGADA 179 (213)
T ss_pred CCEE----C---Cc-CCHHHHHHHHHcCCCEEEECCcccCCHHHHHHHh-hhC-CCCEEEEECCCCHHHHHHHHHCCCcE
Confidence 7765 3 33 45665655543 345555511 1 455555554 222 3344 344544 4577888999998
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
+..+.+ +++ ...++||++-.+.-+.+
T Consensus 180 vavgs~-l~~--------~~~~~~~~~i~~~a~~~ 205 (213)
T PRK06552 180 VGIGGE-LNK--------LASQGDFDLITEKAKKY 205 (213)
T ss_pred EEEchH-HhC--------ccccCCHHHHHHHHHHH
Confidence 876643 222 23367776655544443
No 38
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.51 E-value=0.1 Score=43.87 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=68.0
Q ss_pred HHHHH----HHHHHHHHhc--CCeEEEeCCC-------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC-------CH
Q psy9711 9 EEEKL----KIISTLRQET--KKTIIAGTYC-------ESTRATIDLTQKAAKAGANAALILCPYYFQKKM-------TE 68 (198)
Q Consensus 9 ~~Er~----~l~~~~~~~~--~~pvi~gv~~-------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~-------~~ 68 (198)
.+.|. ++++.+++.+ ++||.+=++. .+.++++++++.+++.|+|.+-+....+..+.. .+
T Consensus 187 ~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~ 266 (327)
T cd02803 187 LENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPE 266 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCc
Confidence 45664 5555555555 5677764442 367899999999999999999988766543220 02
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEE
Q psy9711 69 DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGV 116 (198)
Q Consensus 69 ~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~gi 116 (198)
..-.++.+.+.+.+++||+. .|.--+++...++.+. -.++++
T Consensus 267 ~~~~~~~~~ir~~~~iPVi~------~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 267 GYFLELAEKIKKAVKIPVIA------VGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred chhHHHHHHHHHHCCCCEEE------eCCCCCHHHHHHHHHCCCCCeeee
Confidence 34456777888888999886 3444468888888754 345554
No 39
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=96.48 E-value=0.25 Score=41.47 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcC-CCEEEE--cCCCCcC---CCCCHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAG-ANAALI--LCPYYFQ---KKMTEDLIYEHFISV 78 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~G-ad~v~~--~~P~y~~---~~~~~~~i~~y~~~i 78 (198)
+...++..+-++...+.. +.|+|+.+.+.+.++-.+.++..+++| +|++-+ ..|.... ...+++.+.+..+.|
T Consensus 73 n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v 152 (310)
T PRK02506 73 NLGFDYYLDYVLELQKKGPNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEV 152 (310)
T ss_pred CcCHHHHHHHHHHHHhhcCCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHH
Confidence 445566666666554444 699999988889999999999999998 999876 3454211 112367888888999
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHHHc---CCCEEE---Ee--------------------e-----C-CH-----
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAH---HENIRG---VK--------------------D-----T-DN----- 121 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~g---iK--------------------~-----s-d~----- 121 (198)
-+.+++||++==.|. ++...+.+.++ ...+.| +. . | ..
T Consensus 153 ~~~~~~Pv~vKlsp~-----~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~a 227 (310)
T PRK02506 153 FTYFTKPLGVKLPPY-----FDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTA 227 (310)
T ss_pred HHhcCCccEEecCCC-----CCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHH
Confidence 888899998855553 23344443331 112222 11 0 1 00
Q ss_pred -HHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 122 -IKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 122 -~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
..+.++. +..++++.|. .|-. ......+.+|++.+..+++.+. |..+.++.+.+
T Consensus 228 l~~v~~~~-~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 228 LANVRAFY-QRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred HHHHHHHH-HhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHH
Confidence 1112222 2333455554 2332 2466788999999998888776 77777776655
No 40
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.47 E-value=0.061 Score=44.67 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHhc-C--CeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 7 STEEEKLKIISTLRQET-K--KTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.+.+|..+=++.++++. + +-|++=+ .....+++|++++.+.++|||++++-.|. +.+++. .+++
T Consensus 125 v~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~------~~e~i~----~~~~ 194 (285)
T TIGR02317 125 VSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT------SLEEFR----QFAK 194 (285)
T ss_pred cCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC------CHHHHH----HHHH
Confidence 48889999999999887 4 3344443 23358999999999999999999995431 266654 5555
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
+.+.|+++--........++.+.+.+|
T Consensus 195 ~i~~Pl~~n~~~~~~~p~~s~~eL~~l 221 (285)
T TIGR02317 195 AVKVPLLANMTEFGKTPLFTADELREA 221 (285)
T ss_pred hcCCCEEEEeccCCCCCCCCHHHHHHc
Confidence 567887432111001113566666655
No 41
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.41 E-value=0.14 Score=40.97 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH---ccCCCCEEEEeCCC--CcccccCHHHHHHH--
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA---DNSPIPVIIYNNTF--VTNIDISVDTLVKL-- 107 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~---~~~~~pi~lYn~P~--~tg~~l~~~~l~~L-- 107 (198)
++..-...++.|.+.|++++.+....- ... .+++.+..+++. +..++|+++=.... ..+..++.+.+.+.
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~-~~~--~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVG-SEE--EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecC-Cch--HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHH
Confidence 445556678899999999996654422 222 555555555555 45689999833221 11222456666653
Q ss_pred -H-c-CCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecCh--------hhHHHHhhcCCCeEEeccc
Q psy9711 108 -A-H-HENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA--------GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 108 -~-~-~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d--------~~~~~~l~~G~~G~is~~~ 162 (198)
+ + -+.++++..+ ++..+.++.+ ..+-++.+..|.. +.+...+..|++|+..|.+
T Consensus 151 ~a~~~GaD~Ik~~~~~~~~~~~~i~~-~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~ 216 (235)
T cd00958 151 IGAELGADIVKTKYTGDAESFKEVVE-GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRN 216 (235)
T ss_pred HHHHHCCCEEEecCCCCHHHHHHHHh-cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechh
Confidence 3 3 3567777656 8888888774 3444453333421 2255678899999876653
No 42
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.37 E-value=0.21 Score=40.98 Aligned_cols=147 Identities=17% Similarity=0.183 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCCC--cccccCHHHHHHH---H
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTFV--TNIDISVDTLVKL---A 108 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~~--tg~~l~~~~l~~L---~ 108 (198)
+.-+..++.|.+.|||++.+....- ... ++++.+..++|.+. .++|+++-..|.. .....+++.+.+. +
T Consensus 93 ~~~~~~ve~A~~~Gad~v~~~~~~g-~~~--~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a 169 (267)
T PRK07226 93 KVLVGTVEEAIKLGADAVSVHVNVG-SET--EAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVA 169 (267)
T ss_pred ceeeecHHHHHHcCCCEEEEEEecC-Chh--HHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHH
Confidence 4446678899999999998875432 222 56677777766655 4899988543321 0112355554443 3
Q ss_pred cCCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEecCh--h------hHHHHhhcCCCeEEecccccc----hHHH-HHH
Q psy9711 109 HHENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA--G------YLLSGLLVGCAGGINALSAVL----GGPI-CEL 172 (198)
Q Consensus 109 ~~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d--~------~~~~~l~~G~~G~is~~~n~~----P~~~-~~l 172 (198)
..-..-.+|.+ +...+.++.. ..+-++....|.. . ++...+..|++|+..+- +++ |+.. .++
T Consensus 170 ~e~GAD~vKt~~~~~~~~l~~~~~-~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr-~i~~~~~p~~~~~~l 247 (267)
T PRK07226 170 AELGADIVKTNYTGDPESFREVVE-GCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGR-NVFQHEDPEAITRAI 247 (267)
T ss_pred HHHCCCEEeeCCCCCHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhh-hhhcCCCHHHHHHHH
Confidence 22355666887 5677776663 2234465556655 2 24455789999776554 454 4433 344
Q ss_pred HHHHHcC-CHHHHHHHH
Q psy9711 173 YDLAKAG-KWEEAMKLQ 188 (198)
Q Consensus 173 ~~~~~~g-d~~~A~~l~ 188 (198)
...+..| ..++|.+++
T Consensus 248 ~~~v~~~~~~~ea~~~~ 264 (267)
T PRK07226 248 SAVVHEGASVEEALKIL 264 (267)
T ss_pred HHHHhCCCCHHHHHHHh
Confidence 4444444 356666543
No 43
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.35 E-value=0.31 Score=38.72 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
|+.++..+.++...+... .+++|+|+-.+. +.++.|.++||+.++. |.+ .+++.++-++
T Consensus 48 l~~~~~~~~I~~l~~~~p-~~~IGAGTVl~~---~~a~~a~~aGA~Fivs--P~~------~~~vi~~a~~--------- 106 (212)
T PRK05718 48 LRTPAALEAIRLIAKEVP-EALIGAGTVLNP---EQLAQAIEAGAQFIVS--PGL------TPPLLKAAQE--------- 106 (212)
T ss_pred cCCccHHHHHHHHHHHCC-CCEEEEeeccCH---HHHHHHHHcCCCEEEC--CCC------CHHHHHHHHH---------
Confidence 666778888888877652 256666655444 7788999999997664 442 3477777665
Q ss_pred EEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeCC----HHHHHHHHhhcCCCCeEEE--ecChh-hHHHHhhcCCCeEE
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDTD----NIKLANMANQTKDLNFSVF--AGSAG-YLLSGLLVGCAGGI 158 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~sd----~~~~~~~~~~~~~~~~~v~--~G~d~-~~~~~l~~G~~G~i 158 (198)
++.|...|. ++|..+.+..+.. .++-+-..+ +..+..+. ... +++.++ .|-+. .+...+..|...++
T Consensus 107 --~~i~~iPG~-~TptEi~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~-~p~-p~~~~~ptGGV~~~ni~~~l~ag~v~~v 181 (212)
T PRK05718 107 --GPIPLIPGV-STPSELMLGMELGLRTFKFFPAEASGGVKMLKALA-GPF-PDVRFCPTGGISPANYRDYLALPNVLCI 181 (212)
T ss_pred --cCCCEeCCC-CCHHHHHHHHHCCCCEEEEccchhccCHHHHHHHh-ccC-CCCeEEEeCCCCHHHHHHHHhCCCEEEE
Confidence 555544454 4555566655543 565554442 34444443 222 444443 45543 56677888855555
Q ss_pred ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhh
Q psy9711 159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLV 192 (198)
Q Consensus 159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~ 192 (198)
. .++++|+.. ..++||++..+..+++.
T Consensus 182 g-gs~L~~~~~------~~~~~~~~i~~~a~~~~ 208 (212)
T PRK05718 182 G-GSWMVPKDA------IENGDWDRITRLAREAV 208 (212)
T ss_pred E-ChHhCCcch------hccccHHHHHHHHHHHH
Confidence 4 556666332 45677777666555543
No 44
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.32 E-value=0.38 Score=38.15 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=86.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC--------CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK--------MTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~--------~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.|+++++++.+.++..+.++.++++|+|++-+- .|....-+ ...+.+.+..+.+-+.++.|+.+--...
T Consensus 54 ~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~ 133 (231)
T cd02801 54 ERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLG 133 (231)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeec
Confidence 8999999999999999999999999999999774 34321100 1266677777777777788888743322
Q ss_pred CcccccCHHHHHHHHcCCCEEEEe-------e----C-CHHHHHHHHhhcCCCCeEEE-ecC---hhhHHHHhhc-CCCe
Q psy9711 94 VTNIDISVDTLVKLAHHENIRGVK-------D----T-DNIKLANMANQTKDLNFSVF-AGS---AGYLLSGLLV-GCAG 156 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~p~i~giK-------~----s-d~~~~~~~~~~~~~~~~~v~-~G~---d~~~~~~l~~-G~~G 156 (198)
.+...-..+.+..|.+. ++.++. . . ++..+.++. +. .++.|+ +|. -+.....+.. |++|
T Consensus 134 ~~~~~~~~~~~~~l~~~-Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~-~~--~~ipvi~~Ggi~~~~d~~~~l~~~gad~ 209 (231)
T cd02801 134 WDDEEETLELAKALEDA-GASALTVHGRTREQRYSGPADWDYIAEIK-EA--VSIPVIANGDIFSLEDALRCLEQTGVDG 209 (231)
T ss_pred cCCchHHHHHHHHHHHh-CCCEEEECCCCHHHcCCCCCCHHHHHHHH-hC--CCCeEEEeCCCCCHHHHHHHHHhcCCCE
Confidence 11110112233334333 344441 1 1 555555544 32 334444 332 1235556666 8999
Q ss_pred EEeccccc-chHHHHHH
Q psy9711 157 GINALSAV-LGGPICEL 172 (198)
Q Consensus 157 ~is~~~n~-~P~~~~~l 172 (198)
++.|.+.+ -|.++.++
T Consensus 210 V~igr~~l~~P~~~~~~ 226 (231)
T cd02801 210 VMIGRGALGNPWLFREI 226 (231)
T ss_pred EEEcHHhHhCCHHHHhh
Confidence 99887754 36655544
No 45
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.30 E-value=0.11 Score=43.21 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=46.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
|..+--+.+...++++.+.+..++||++=++. +.++.+++++.++++|+|++.+..
T Consensus 135 g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~-~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 135 GIAIGQDPELSADVVKAVKDKTDVPVFAKLSP-NVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEECCC-ChhhHHHHHHHHHHcCCCEEEEEc
Confidence 44555677888889998887768899988874 678999999999999999999864
No 46
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.18 E-value=0.059 Score=42.82 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCC-cH-HHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCE-ST-RATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~~~~ 84 (198)
..+.-.++++.+.+.++.||.+.+... +. ++++++++.+.+.|+|.+.+....... +. ...-.++.+.+.+.+++
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~--~~~~~~~~~~i~~~~~i 184 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYS--GPADWDYIAEIKEAVSI 184 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCC--CCCCHHHHHHHHhCCCC
Confidence 344455666666655467777765321 22 489999999999999999887643211 11 11124666778888889
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~ 127 (198)
||+. .|.--+++.+.++.+...+.++=.. |+..+.++
T Consensus 185 pvi~------~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~ 226 (231)
T cd02801 185 PVIA------NGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI 226 (231)
T ss_pred eEEE------eCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence 9887 3444578888888765444333333 55555443
No 47
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.13 E-value=0.69 Score=39.03 Aligned_cols=154 Identities=14% Similarity=0.084 Sum_probs=95.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCC--cCC------CCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYY--FQK------KMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y--~~~------~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
..|+++++.+++.++..+.++.+++.|+|++=+- .|.- .+. -.+++-+.+-.+.+.++++.||.+--.-+
T Consensus 64 ~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G 143 (321)
T PRK10415 64 PGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTG 143 (321)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 5788899999999999999999999999998775 3531 110 01378888888888888899988765322
Q ss_pred CcccccCHHHHH-HHHcC--CCE--EEEe------eC-CHHHHHHHHhhcCCCCeEEE-ecCh---hhHHHHhh-cCCCe
Q psy9711 94 VTNIDISVDTLV-KLAHH--ENI--RGVK------DT-DNIKLANMANQTKDLNFSVF-AGSA---GYLLSGLL-VGCAG 156 (198)
Q Consensus 94 ~tg~~l~~~~l~-~L~~~--p~i--~giK------~s-d~~~~~~~~~~~~~~~~~v~-~G~d---~~~~~~l~-~G~~G 156 (198)
++....+...+. .+.+. ..| .|.. -. |+..+.++.+ .. ++.|+ +|.= ......+. .|++|
T Consensus 144 ~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~-~~--~iPVI~nGgI~s~~da~~~l~~~gadg 220 (321)
T PRK10415 144 WAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQ-KV--SIPVIANGDITDPLKARAVLDYTGADA 220 (321)
T ss_pred ccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHH-hc--CCcEEEeCCCCCHHHHHHHHhccCCCE
Confidence 222112232333 33332 222 2221 11 5565555542 22 34443 3421 12344554 69999
Q ss_pred EEeccccc-chHHHHHHHHHHHcCC
Q psy9711 157 GINALSAV-LGGPICELYDLAKAGK 180 (198)
Q Consensus 157 ~is~~~n~-~P~~~~~l~~~~~~gd 180 (198)
++.|-+.+ -|.++.++-+.+..|+
T Consensus 221 VmiGR~~l~nP~if~~~~~~~~~~~ 245 (321)
T PRK10415 221 LMIGRAAQGRPWIFREIQHYLDTGE 245 (321)
T ss_pred EEEChHhhcCChHHHHHHHHHhCCC
Confidence 99998876 6888888877666553
No 48
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.09 E-value=0.052 Score=45.57 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=72.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeC--CCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGT--YCE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
|-+..-+++.-.++++.+++.+++||-+-+ +.. +.++++++++..+++|++++.+.+-.--.. .+...=.++++.|
T Consensus 100 Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~-~~~~a~w~~i~~i 178 (309)
T PF01207_consen 100 GAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR-YKGPADWEAIAEI 178 (309)
T ss_dssp GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC-CTS---HHHHHHC
T ss_pred ChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc-CCcccchHHHHHH
Confidence 445556777778899999887777776643 333 578899999999999999999987432111 1123345677888
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
.+.+++||+. .|--.+++...++.+..++.|+=-.
T Consensus 179 ~~~~~ipvi~------NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 179 KEALPIPVIA------NGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHC-TSEEEE------ESS--SHHHHHHHCCCH-SSEEEES
T ss_pred hhcccceeEE------cCccCCHHHHHHHHHhcCCcEEEEc
Confidence 8888988876 4556788999998877778888776
No 49
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.05 E-value=0.15 Score=42.60 Aligned_cols=90 Identities=19% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhc-C--CeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 7 STEEEKLKIISTLRQET-K--KTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.+.+|..+=++.++++. . +-|++=+ .....+++|++++.+.++|||++++-.| .+ .+++.+ +++
T Consensus 129 v~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~----~~--~~ei~~----~~~ 198 (294)
T TIGR02319 129 ISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM----LD--VEEMKR----VRD 198 (294)
T ss_pred cCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC----CC--HHHHHH----HHH
Confidence 58888888899998876 3 4444533 2346899999999999999999998533 23 666544 455
Q ss_pred cCCCCEEEEeCCCCccc-ccCHHHHHHH
Q psy9711 81 NSPIPVIIYNNTFVTNI-DISVDTLVKL 107 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~-~l~~~~l~~L 107 (198)
..+.|++ .|.-..++. .++.+.+.+|
T Consensus 199 ~~~~P~~-~nv~~~~~~p~~s~~eL~~l 225 (294)
T TIGR02319 199 EIDAPLL-ANMVEGGKTPWLTTKELESI 225 (294)
T ss_pred hcCCCee-EEEEecCCCCCCCHHHHHHc
Confidence 5567863 222111122 3565555555
No 50
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=96.04 E-value=0.56 Score=38.43 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=87.5
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+|.+.-.++++.+.+.- ++|++.=...+..-. .=+..+.++++|+|++++.-=. .|+- +-|+..++..+
T Consensus 69 ~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP-------~ee~-~~~~~~~~~~g 140 (259)
T PF00290_consen 69 FTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLP-------PEES-EELREAAKKHG 140 (259)
T ss_dssp --HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSB-------GGGH-HHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCC-------hHHH-HHHHHHHHHcC
Confidence 46667778888888444 899987666654322 3358899999999999996311 2222 35566788889
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecChh---hHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSAG---YLL 147 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d~---~~~ 147 (198)
+.++..=.|. -+.+-+.++++ -+.++.+ +.. +...+.+.+++.. +..++.|.+- --.
T Consensus 141 l~~I~lv~p~-----t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~ 213 (259)
T PF00290_consen 141 LDLIPLVAPT-----TPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQA 213 (259)
T ss_dssp -EEEEEEETT-----S-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHH
T ss_pred CeEEEEECCC-----CCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHH
Confidence 9999888774 46788888884 4555554 332 1222333333333 6677777662 234
Q ss_pred HHhhcCCCeEEeccc
Q psy9711 148 SGLLVGCAGGINALS 162 (198)
Q Consensus 148 ~~l~~G~~G~is~~~ 162 (198)
..+..|+||+|-|.+
T Consensus 214 ~~~~~~aDGvIVGSa 228 (259)
T PF00290_consen 214 KKLAAGADGVIVGSA 228 (259)
T ss_dssp HHHHTTSSEEEESHH
T ss_pred HHHHccCCEEEECHH
Confidence 455689999999874
No 51
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.03 E-value=0.73 Score=38.38 Aligned_cols=164 Identities=13% Similarity=0.062 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHh---cCCeEEEeCCCCcHHHHHHHHHHHHhc---CCCEEEEc--CCCCcC---CCCCHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQE---TKKTIIAGTYCESTRATIDLTQKAAKA---GANAALIL--CPYYFQ---KKMTEDLIYEHF 75 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~---~~~pvi~gv~~~~~~~~i~~a~~a~~~---Gad~v~~~--~P~y~~---~~~~~~~i~~y~ 75 (198)
...++..+-++...+. .+.||++++.+. .++-++.++..++. |+|++-+- .|.... ...+++.+.+..
T Consensus 71 ~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~ 149 (294)
T cd04741 71 LGLDYYLEYIRTISDGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYL 149 (294)
T ss_pred cCHHHHHHHHHHHhhhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHH
Confidence 3455556555544433 268999999988 99999999998886 69998763 455311 112488899999
Q ss_pred HHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc----CC-C---EEE---------Ee-----------e--C--C---
Q psy9711 76 ISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH----HE-N---IRG---------VK-----------D--T--D--- 120 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~----~p-~---i~g---------iK-----------~--s--d--- 120 (198)
+.+.+.+++||++==.|.. +.+.+.++++ .. . |+. |. . . .
T Consensus 150 ~~v~~~~~iPv~vKl~p~~-----~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~ 224 (294)
T cd04741 150 TAVKAAYSIPVGVKTPPYT-----DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAY 224 (294)
T ss_pred HHHHHhcCCCEEEEeCCCC-----CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchh
Confidence 9999988999998776643 3333344432 21 1 331 11 1 0 0
Q ss_pred -----HHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHHH
Q psy9711 121 -----NIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLAK 177 (198)
Q Consensus 121 -----~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~~ 177 (198)
+..+.++. +..+.++.|+. |-. ......+.+|++++..+++.+. |..+.++.+.++
T Consensus 225 i~~~al~~v~~~~-~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 291 (294)
T cd04741 225 LHPLALGNVRTFR-RLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKELE 291 (294)
T ss_pred hHHHHHHHHHHHH-HhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHHH
Confidence 01122222 23333455542 222 2456778899999999999874 988888876554
No 52
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.03 E-value=0.72 Score=38.31 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEE--cCCCCcC----CCCCHHHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG--ANAALI--LCPYYFQ----KKMTEDLIYEHFISVA 79 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~--~~P~y~~----~~~~~~~i~~y~~~i~ 79 (198)
..++..+.++...+..+.|+++++.+.+.++..+.++..+++| +|++-+ ..|.... ...+++.+.+..+++-
T Consensus 74 g~~~~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 74 GVEAFLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred CHHHHHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 3445444444433222679999998889999999999999874 899888 4565422 1124788889999998
Q ss_pred ccCCCCEEEEeCC
Q psy9711 80 DNSPIPVIIYNNT 92 (198)
Q Consensus 80 ~~~~~pi~lYn~P 92 (198)
+++++||.+==.|
T Consensus 154 ~~~~~pv~vKi~~ 166 (300)
T TIGR01037 154 DKTDVPVFAKLSP 166 (300)
T ss_pred HhcCCCEEEECCC
Confidence 8889999875433
No 53
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=96.02 E-value=0.17 Score=42.20 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHHhc-C--CeEEEeCC----CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET-K--KTIIAGTY----CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv~----~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
.+.+|..+-++.++++. + +-|++=+- ..+.+++|++++.+.++|||++++-.|. . +.+++.+.-+.+.
T Consensus 129 ~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~---~--~~~ei~~~~~~~~ 203 (290)
T TIGR02321 129 VRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ---K--TPDEILAFVKSWP 203 (290)
T ss_pred cCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC---C--CHHHHHHHHHhcC
Confidence 58888888888888875 3 34444432 2356999999999999999999995332 2 3777776666552
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
.++|+++- |. .+..++.+.+.+|.
T Consensus 204 --~p~pv~~~--~~-~~p~~~~~~l~~lg 227 (290)
T TIGR02321 204 --GKVPLVLV--PT-AYPQLTEADIAALS 227 (290)
T ss_pred --CCCCeEEe--cC-CCCCCCHHHHHHhc
Confidence 25788743 32 22346777777664
No 54
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=95.95 E-value=0.3 Score=43.43 Aligned_cols=99 Identities=6% Similarity=-0.076 Sum_probs=65.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||.+....+++.+ +..+ .+.+++.++++.+++++.+++.|+.++|+.+-.+ ..+ ..+..+
T Consensus 208 dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~G~~~~mv~~~~~-G~~-----al~~l~ 281 (475)
T CHL00040 208 SQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRAVFARELGVPIVMHDYLTG-GFT-----ANTSLA 281 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHHHHHHHcCCceEEEecccc-ccc-----hHHHHH
Confidence 345567789988777777766 3344 5678877899999999999999999998864443 332 134444
Q ss_pred HHHccCCCCEEEEeCCCCcc-------cccCHHHHHHHHc
Q psy9711 77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLVKLAH 109 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L~~ 109 (198)
+-++..++||..|-. ..| .-++.-++.+|.+
T Consensus 282 ~~~~~~~l~IhaHrA--~~ga~~r~~~~Gis~~vl~KL~R 319 (475)
T CHL00040 282 HYCRDNGLLLHIHRA--MHAVIDRQKNHGIHFRVLAKALR 319 (475)
T ss_pred HHhhhcCceEEeccc--cccccccCccCCCcHHHHHHHHH
Confidence 444456788766533 222 2355566666654
No 55
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.93 E-value=0.23 Score=40.27 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH--HHHHccCC-------
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF--ISVADNSP------- 83 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~--~~i~~~~~------- 83 (198)
.++++.+.+.+++||++|-|-.+.+++.+... .|++++++....+..|. --+++.+.| +.+.-+.+
T Consensus 63 ~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~----~Ga~~Viigt~~l~~p~-~~~ei~~~~g~~~iv~slD~~~~~~~ 137 (253)
T PRK02083 63 LDVVERVAEQVFIPLTVGGGIRSVEDARRLLR----AGADKVSINSAAVANPE-LISEAADRFGSQCIVVAIDAKRDPEP 137 (253)
T ss_pred HHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH----cCCCEEEEChhHhhCcH-HHHHHHHHcCCCCEEEEEEeccCCCC
Confidence 45666666655899999888776666655544 69999999887765442 123333333 11222222
Q ss_pred CCEEEEeCCCCcccccCHHHH-HHHHcC--CCEE-------EEeeC-CHHHHHHHHhhcCCCCeEEEec-Ch--hhHHHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTL-VKLAHH--ENIR-------GVKDT-DNIKLANMANQTKDLNFSVFAG-SA--GYLLSG 149 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l-~~L~~~--p~i~-------giK~s-d~~~~~~~~~~~~~~~~~v~~G-~d--~~~~~~ 149 (198)
-|+-++..-+.....+++..+ .++.+. ..++ |.+.. |+..+.++.+ ..+-++ +.+| .. +.+...
T Consensus 138 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~-~~~ipv-ia~GGv~s~~d~~~~ 215 (253)
T PRK02083 138 GRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSD-AVNVPV-IASGGAGNLEHFVEA 215 (253)
T ss_pred CCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHh-hCCCCE-EEECCCCCHHHHHHH
Confidence 234444433223334555444 444433 2222 33333 6777777663 332233 3333 22 235556
Q ss_pred hh-cCCCeEEecccccc
Q psy9711 150 LL-VGCAGGINALSAVL 165 (198)
Q Consensus 150 l~-~G~~G~is~~~n~~ 165 (198)
+. .|++|++.|.+-..
T Consensus 216 ~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 216 FTEGGADAALAASIFHF 232 (253)
T ss_pred HHhCCccEEeEhHHHHc
Confidence 65 59999999887443
No 56
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.93 E-value=0.7 Score=37.36 Aligned_cols=157 Identities=15% Similarity=0.170 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCc-HHHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQETKKTIIAGTYCES-TRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~-~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
++++.+.+..++|++.-+.-+. ..+.-+.++.++++|+|++.+.. |+ .+ .++..+++ ..+...++..++.=+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~---e~--~~~~~~~~-~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLI---DY--PDDLEKYV-EIIKNKGLKPVFFTS 137 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCC---Cc--HHHHHHHH-HHHHHcCCCEEEEEC
Confidence 4566665444788754332222 34556678889999999999952 22 11 34554444 444567887777777
Q ss_pred CCCcccccCHHHHHHHHc-CCCEE--EEeeC-------CHH-HHHHHHhhcCC-CCeEEEecC-h-hhHHHHhhcCCCeE
Q psy9711 92 TFVTNIDISVDTLVKLAH-HENIR--GVKDT-------DNI-KLANMANQTKD-LNFSVFAGS-A-GYLLSGLLVGCAGG 157 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~-~p~i~--giK~s-------d~~-~~~~~~~~~~~-~~~~v~~G~-d-~~~~~~l~~G~~G~ 157 (198)
|. -+.+.+..+++ .+.++ ++.-. +.. ++.++. +... ..+.+=.|- . +........|+||+
T Consensus 138 p~-----T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr-~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 138 PK-----FPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVR-NLVGNKYLVVGFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred CC-----CCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHH-HhcCCCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 74 25677888774 67766 33221 222 333333 2221 223332333 2 24555578999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
+.|.+ ++ +++ .+++.+++.+..+++
T Consensus 212 vvGSa-----i~-~~~---~~~~~~~~~~~~~~~ 236 (244)
T PRK13125 212 VVGTA-----FI-EEL---EKNGVESALNLLKKI 236 (244)
T ss_pred EECHH-----HH-HHH---HhcCHHHHHHHHHHH
Confidence 99964 11 222 234566655555544
No 57
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.92 E-value=0.75 Score=37.59 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHHHh-cCCeEEEeCCCCcH--H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 7 STEEEKLKIISTLRQE-TKKTIIAGTYCEST--R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~-~~~pvi~gv~~~~~--~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
+|.+.-.++++.+.+. .++|++ +-+-.++ + -.-+..+.++++|+|++++.. -| .++..+ +...++..
T Consensus 69 ~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD----lp---~ee~~~-~~~~~~~~ 139 (256)
T TIGR00262 69 MTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD----LP---LEESGD-LVEAAKKH 139 (256)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC----CC---hHHHHH-HHHHHHHC
Confidence 4556667777777765 377865 3333333 1 225678899999999998852 12 455544 44445667
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHc-CC---------CEEEEeeC---CH-HHHHHHHhhcCCCCeEEEecCh--hhH
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAH-HE---------NIRGVKDT---DN-IKLANMANQTKDLNFSVFAGSA--GYL 146 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p---------~i~giK~s---d~-~~~~~~~~~~~~~~~~v~~G~d--~~~ 146 (198)
++..++.-.|. -+.+.+..+++ .+ .+.|.|.. +. ..+.++. +..+..+.+=.|-. +..
T Consensus 140 gl~~i~lv~P~-----T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr-~~~~~pi~vgfGI~~~e~~ 213 (256)
T TIGR00262 140 GVKPIFLVAPN-----ADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLK-AYSAKPVLVGFGISKPEQV 213 (256)
T ss_pred CCcEEEEECCC-----CCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHH-hhcCCCEEEeCCCCCHHHH
Confidence 88877666664 24666666664 23 23344432 22 3344433 33333333323332 355
Q ss_pred HHHhhcCCCeEEeccc
Q psy9711 147 LSGLLVGCAGGINALS 162 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~ 162 (198)
-.....|+||++.|.+
T Consensus 214 ~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 214 KQAIDAGADGVIVGSA 229 (256)
T ss_pred HHHHHcCCCEEEECHH
Confidence 6667899999999975
No 58
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=95.89 E-value=0.2 Score=41.76 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=44.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 3 NSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
+....+.+.-.++++.+.+.+++||++-++. +.++..+.++.++++|+|++.+..
T Consensus 136 ~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 136 MAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-NVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEcCC-CchhHHHHHHHHHHcCCCEEEEEc
Confidence 3444567777888888887668999998874 567899999999999999998753
No 59
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.87 E-value=0.81 Score=37.59 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcH-H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCEST-R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~-~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+|.+.-.++++.+.+..++|++.=...+.. + -.-+..+.++++|+|++++..= | .++..+ |...++..++
T Consensus 74 ~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL----P---~ee~~~-~~~~~~~~gi 145 (263)
T CHL00200 74 INLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL----P---YEESDY-LISVCNLYNI 145 (263)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCC----C---HHHHHH-HHHHHHHcCC
Confidence 345555666666654337886543443332 2 2245788999999999998521 1 445444 4445567888
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc-C---------CCEEEEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH-H---------ENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYLL 147 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~-~---------p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~~ 147 (198)
..+..=.|. -+.+-+.++++ . +.+.|.|.. +...+.+.+++..+ ..+..|.+ +..-
T Consensus 146 ~~I~lv~Pt-----T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~--~Pi~vGFGI~~~e~~~ 218 (263)
T CHL00200 146 ELILLIAPT-----SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN--KPIILGFGISTSEQIK 218 (263)
T ss_pred CEEEEECCC-----CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC--CCEEEECCcCCHHHHH
Confidence 888777775 25667777763 2 445555644 33444434433333 33444543 2455
Q ss_pred HHhhcCCCeEEeccc
Q psy9711 148 SGLLVGCAGGINALS 162 (198)
Q Consensus 148 ~~l~~G~~G~is~~~ 162 (198)
.....|+||++.|.+
T Consensus 219 ~~~~~GADGvVVGSa 233 (263)
T CHL00200 219 QIKGWNINGIVIGSA 233 (263)
T ss_pred HHHhcCCCEEEECHH
Confidence 556789999999975
No 60
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.81 E-value=0.86 Score=37.48 Aligned_cols=92 Identities=21% Similarity=0.197 Sum_probs=57.8
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-------
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVIIY------- 89 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY------- 89 (198)
+.-+|+| ++-.+.+.+++.|+..+++|+..+... .|+-++.- .++-++..+++++..++|++--
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~--g~~gl~~l~~~~~~~Gl~~~te~~d~~~~ 104 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL--GEEGLKILKEVGDKYNLPVVTEVMDTRDV 104 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc--HHHHHHHHHHHHHHcCCCEEEeeCChhhH
Confidence 4567888 455578889999999999999865555 25444422 3555566777777777877632
Q ss_pred ----------eCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 90 ----------NNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 90 ----------n~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
-+|+++ .-+.+++.++++...-+++|-.
T Consensus 105 ~~l~~~vd~~kIga~~--~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 105 EEVADYADMLQIGSRN--MQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHhCCEEEECccc--ccCHHHHHHHhcCCCcEEEeCC
Confidence 222221 2234456666666666666665
No 61
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.79 E-value=0.34 Score=41.28 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeCCC-------CcHHHHHHHHHHHHhcC-CCEEEEcCCCCcCC--------C
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGTYC-------ESTRATIDLTQKAAKAG-ANAALILCPYYFQK--------K 65 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv~~-------~~~~~~i~~a~~a~~~G-ad~v~~~~P~y~~~--------~ 65 (198)
|.+.|.+++..+++.. +++|.+=++. .+.++++++++..+++| +|.+-+....+... +
T Consensus 186 slenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~ 265 (343)
T cd04734 186 SLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPS 265 (343)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCC
Confidence 4567766666555554 3344433332 46789999999999998 89998864433211 0
Q ss_pred -C-CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711 66 -M-TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA 128 (198)
Q Consensus 66 -~-~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~ 128 (198)
. .+.-..++.+.+-+.+++||+. +|.-.+++...++.+...+-++=.. |+....++.
T Consensus 266 ~~~~~~~~~~~~~~ik~~~~ipvi~------~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 266 MGMPPGPFLPLAARIKQAVDLPVFH------AGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred CCCCcchhHHHHHHHHHHcCCCEEe------eCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence 0 0111245556666777899876 4544578888888866544444333 666666655
No 62
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.78 E-value=0.063 Score=42.97 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCeEEE-e-CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 14 KIISTLRQETKKTIIA-G-TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~-g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
+.++.+++..++||++ | ++..+.+++++.++.+.+.|++++.+..-.|..++ +.+..+-++.+.
T Consensus 169 ~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~d--p~~~~~~~~~~~ 234 (235)
T cd00958 169 ESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPD--PVAMLRAISAVV 234 (235)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCC--HHHHHHHHHHHh
Confidence 3445555544778766 3 45568899999999999999999999999888877 888888887764
No 63
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.76 E-value=0.45 Score=40.35 Aligned_cols=113 Identities=7% Similarity=0.051 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--------C
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKK--------M 66 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--------~ 66 (198)
|.+.|.++...+++++ +.||.+=++ +.+.+++++.++..++.|+|.+-+..-.+..+. .
T Consensus 194 slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~ 273 (338)
T cd04733 194 SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKEST 273 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCc
Confidence 4567776555554444 467766553 457899999999999999999987643322111 0
Q ss_pred -CHHH-HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHH
Q psy9711 67 -TEDL-IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLAN 126 (198)
Q Consensus 67 -~~~~-i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~ 126 (198)
..+. ..++.+.|.+++++||+. .|.--+++...++.+.. .++++=-. |+....+
T Consensus 274 ~~~~~~~~~~~~~ik~~v~iPVi~------~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 274 IAREAYFLEFAEKIRKVTKTPLMV------TGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNK 334 (338)
T ss_pred cccchhhHHHHHHHHHHcCCCEEE------eCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHH
Confidence 0111 245667777888999887 34344788888887543 44444333 5544443
No 64
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.75 E-value=0.13 Score=43.64 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCeEEEeCCCCc--------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCC
Q psy9711 24 KKTIIAGTYCES--------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNT 92 (198)
Q Consensus 24 ~~pvi~gv~~~~--------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P 92 (198)
++|+|+.+++.+ .+...--.+.|.++|||+|.+.--.- ... +.+.++-..++++.+ ++|+++.-.|
T Consensus 125 ~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G-s~~--E~~ml~~l~~i~~ea~~~GlPlv~~~Yp 201 (348)
T PRK09250 125 KIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG-SEE--SRRQIEEISEAFEEAHELGLATVLWSYL 201 (348)
T ss_pred CCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHH--HHHHHHHHHHHHHHHHHhCCCEEEEecc
Confidence 689999876532 13334447889999999999873322 222 666777777777655 7999987666
Q ss_pred CCccc------ccCHHHH---HHHH-cC-CCEEEEeeC-CHHHHHHH
Q psy9711 93 FVTNI------DISVDTL---VKLA-HH-ENIRGVKDT-DNIKLANM 127 (198)
Q Consensus 93 ~~tg~------~l~~~~l---~~L~-~~-p~i~giK~s-d~~~~~~~ 127 (198)
..... .-+++.+ .|++ ++ ..|+=+|.+ |...+.++
T Consensus 202 RG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 202 RNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred cCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 42211 1124444 4666 55 489999988 76665554
No 65
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.75 E-value=0.36 Score=40.00 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=42.8
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 4 SFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
.+.-+++.-.++++.+.+.+++||++-++. +.++..+.++.++++|+|++.+..
T Consensus 134 ~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-~~~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 134 AFGTDPEAVAEIVKAVKKATDVPVIVKLTP-NVTDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred cccCCHHHHHHHHHHHHhccCCCEEEEeCC-CchhHHHHHHHHHHcCCCEEEEEC
Confidence 344566666788888877668999998874 556899999999999999998753
No 66
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.73 E-value=0.77 Score=36.35 Aligned_cols=119 Identities=10% Similarity=0.010 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE--
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV-- 116 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi-- 116 (198)
.+.++.+.++|||.+++..|.-..|+ .+++.+..+.+-+..++|++.-. .+.+.+.++.+. ..++++
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~--~~~~~~~i~~~~~~~~i~vi~~v--------~t~ee~~~a~~~G~d~i~~~~ 147 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPD--GETLAELVKRIKEYPGQLLMADC--------STLEEGLAAQKLGFDFIGTTL 147 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCC--CCCHHHHHHHHHhCCCCeEEEeC--------CCHHHHHHHHHcCCCEEEcCC
Confidence 35678999999998887766543332 13333444433322568877521 245555555543 233333
Q ss_pred --------eeC--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccchHHH
Q psy9711 117 --------KDT--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGGPI 169 (198)
Q Consensus 117 --------K~s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~~~ 169 (198)
+.. +...+.++. +..+-.+..-.|.. +.+...+..|++|++.|.+-+-|+..
T Consensus 148 ~g~t~~~~~~~~~~~~~i~~i~-~~~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~ 211 (221)
T PRK01130 148 SGYTEETKKPEEPDFALLKELL-KAVGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEI 211 (221)
T ss_pred ceeecCCCCCCCcCHHHHHHHH-HhCCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHH
Confidence 112 455555555 33333343444542 35667788999999998765545433
No 67
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.72 E-value=0.21 Score=41.97 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEe--CCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCCCCHHHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAG--TYCESTRATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~g--v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~~~~~~i~~y~~~i~ 79 (198)
.++--.++++.+++.+ ++||.+= +|..+.+++++.++.++++|+|.+.+.+-. |..+ .-. .++.+.|.
T Consensus 115 ~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~---~~~-~~~i~~ik 190 (312)
T PRK10550 115 DPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAE---HIN-WQAIGEIR 190 (312)
T ss_pred CHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCC---ccc-HHHHHHHH
Confidence 4455566777777766 4888775 455555778999999999999999997643 2221 112 26788888
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA 128 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~ 128 (198)
+++++||+. | |--.+++...++.+...+-|+=.. |+.-+.++.
T Consensus 191 ~~~~iPVi~-n-----GdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~ 238 (312)
T PRK10550 191 QRLTIPVIA-N-----GEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVK 238 (312)
T ss_pred hhcCCcEEE-e-----CCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhh
Confidence 888999765 3 545689999998877777777666 666666543
No 68
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.69 E-value=0.15 Score=42.10 Aligned_cols=89 Identities=25% Similarity=0.252 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHhc-CCe--EEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 7 STEEEKLKIISTLRQET-KKT--IIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~p--vi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.+.+|-.+=++.++++. +.+ +++-+ ....++++|++++.+.++|||++.. |.. + +. +.|+.+++
T Consensus 130 ~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al---~-~~----e~i~~f~~ 199 (289)
T COG2513 130 VSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP--EAL---T-DL----EEIRAFAE 199 (289)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccC---C-CH----HHHHHHHH
Confidence 46788888899998887 323 33321 3334899999999999999998764 321 1 24 44556666
Q ss_pred cCC--CCEEEEeCCCCcccccCHHHHHHH
Q psy9711 81 NSP--IPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 81 ~~~--~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
+++ +|+-+--.+. | ..++.+.|.++
T Consensus 200 av~~pl~~N~t~~g~-t-p~~~~~~L~~~ 226 (289)
T COG2513 200 AVPVPLPANITEFGK-T-PLLTVAELAEL 226 (289)
T ss_pred hcCCCeeeEeeccCC-C-CCcCHHHHHhc
Confidence 665 5554444432 1 24666666665
No 69
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.69 E-value=0.57 Score=37.93 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH-c--CC
Q psy9711 42 LTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-H--HE 111 (198)
Q Consensus 42 ~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~--~p 111 (198)
-++.++++|++++.+..-. +..|+ .+-+++..+-+.|+..+++| ++-|.|.-.| +++.+.+.. + --
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~G~g---~~~~~~~~v~~~~~~ 96 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLP-VIADADTGYG---NALNVARTVRELEEA 96 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCC-EEEEcCCCCC---CHHHHHHHHHHHHHc
Confidence 3566677799999987522 11121 35899999999999999999 6778875333 334443333 2 26
Q ss_pred CEEEEeeC-----------------CH----HHHHHHHhhcCC-CCeEEEecChhhHH-------------HHhhcCCCe
Q psy9711 112 NIRGVKDT-----------------DN----IKLANMANQTKD-LNFSVFAGSAGYLL-------------SGLLVGCAG 156 (198)
Q Consensus 112 ~i~giK~s-----------------d~----~~~~~~~~~~~~-~~~~v~~G~d~~~~-------------~~l~~G~~G 156 (198)
.+.|+|-+ +. .+++.......+ ++|.|..+.|.... ....+|+|+
T Consensus 97 G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~ 176 (243)
T cd00377 97 GAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADG 176 (243)
T ss_pred CCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCE
Confidence 89999983 22 223333322223 58999988554322 235689998
Q ss_pred EEecccccchHHHHHHHH
Q psy9711 157 GINALSAVLGGPICELYD 174 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~ 174 (198)
++.-... -++.+.++.+
T Consensus 177 v~v~~~~-~~~~~~~~~~ 193 (243)
T cd00377 177 IFVEGLK-DPEEIRAFAE 193 (243)
T ss_pred EEeCCCC-CHHHHHHHHh
Confidence 8754332 3444444444
No 70
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=95.68 E-value=0.81 Score=36.21 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEEe
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVK 117 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK 117 (198)
..++++.+.++|+|.+++..+....|. .+.+.++++.+.+..++|++. . ..+++...++.+. ..++++.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~--~~~~~~~i~~~~~~g~~~iiv-~-------v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPD--GETLAELIKRIHEEYNCLLMA-D-------ISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCC--CcCHHHHHHHHHHHhCCeEEE-E-------CCCHHHHHHHHHcCCCEEEcc
Confidence 356889999999998888765543333 335556666665544688776 1 1245555555543 2333332
Q ss_pred ----------eC--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccchHH
Q psy9711 118 ----------DT--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGGP 168 (198)
Q Consensus 118 ----------~s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~~ 168 (198)
.. +...+.++. +..+-.+..-.|-. +.....+..|++|++.|.+-+-++.
T Consensus 151 ~~g~t~~~~~~~~~~~~~l~~i~-~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 151 LSGYTEETAKTEDPDFELLKELR-KALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEH 214 (219)
T ss_pred CccccccccCCCCCCHHHHHHHH-HhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHh
Confidence 11 445555554 23333343344542 3566778899999998876443443
No 71
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=95.65 E-value=0.93 Score=38.32 Aligned_cols=144 Identities=11% Similarity=0.077 Sum_probs=87.9
Q ss_pred CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEE--cCCCCcC--CCCCHHHHHHHHHHHHccCC-----CCEE
Q psy9711 24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALI--LCPYYFQ--KKMTEDLIYEHFISVADNSP-----IPVI 87 (198)
Q Consensus 24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~--~~P~y~~--~~~~~~~i~~y~~~i~~~~~-----~pi~ 87 (198)
+.|+++.++.++ .+|-.+.++.+.+ ++|++-+ ..|.+.. ...+++.+.+..+.+.+.++ +||+
T Consensus 128 ~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~ 206 (327)
T cd04738 128 GGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLL 206 (327)
T ss_pred CCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeE
Confidence 799999998765 4666777777665 4898887 5666421 11247888888899888775 8998
Q ss_pred EEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-C----------------------------HHHHHHHHhhcCCCC
Q psy9711 88 IYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-D----------------------------NIKLANMANQTKDLN 135 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-d----------------------------~~~~~~~~~~~~~~~ 135 (198)
+==.|. ++.+.+.+++ +--++.||+-+ . +..+.++. +..+++
T Consensus 207 vKl~~~-----~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~-~~~~~~ 280 (327)
T cd04738 207 VKIAPD-----LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY-KLTGGK 280 (327)
T ss_pred EEeCCC-----CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH-HHhCCC
Confidence 765553 3323333333 22356666533 1 12222222 333334
Q ss_pred eEEE-ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHH
Q psy9711 136 FSVF-AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD 174 (198)
Q Consensus 136 ~~v~-~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~ 174 (198)
+.|. +| .. ......+..|++++..+.+.+. |..+.++.+
T Consensus 281 ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred CcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 5554 23 22 2456677889999988888754 877777644
No 72
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.65 E-value=0.21 Score=42.70 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeC-------CCCcHHHHHHHHHHHHhcCCCEEEEcC-----CCCcCC-CCCH
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGT-------YCESTRATIDLTQKAAKAGANAALILC-----PYYFQK-KMTE 68 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv-------~~~~~~~~i~~a~~a~~~Gad~v~~~~-----P~y~~~-~~~~ 68 (198)
|.+.|.+++..+++++ +++|.+=+ +..+.++++++++..+++|+|.+-++. |..... ...+
T Consensus 182 slenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~ 261 (353)
T cd02930 182 SFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPR 261 (353)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCc
Confidence 3455665555555444 34554222 235789999999999999999998842 211100 0012
Q ss_pred HHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 69 DLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 69 ~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
.....+.+.|.+.+++||+. .|.-.+++...++.+.. .++++=-. |+....++.
T Consensus 262 ~~~~~~~~~ik~~v~iPVi~------~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 262 GAFAWATAKLKRAVDIPVIA------SNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAA 320 (353)
T ss_pred hhhHHHHHHHHHhCCCCEEE------cCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHH
Confidence 33456678888889999887 45556889899888644 33333322 666666655
No 73
>PLN02433 uroporphyrinogen decarboxylase
Probab=95.56 E-value=0.66 Score=39.48 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH----HHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF----ISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~----~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+++.++...++||+.+.+.-|.-...+ +++..+|. ++|.+.. +.|+++|.. |.. ..+..+++
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~~~ls--p~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~c----G~~---~~~~~~~~ 251 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWAGHLS--PVDFEEFSKPYLEKIVDEVKARHPDVPLILYAN----GSG---GLLERLAG 251 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeC----CCH---HHHHHHHh
Confidence 356666667899999998877544444 77777554 6777665 357787763 332 56778887
Q ss_pred CC-CEEEEeeC-CHHHHHHHHhhcCCCCeE--------EEecChhhH----HHHhh-cCCCeEEecccccch-----HHH
Q psy9711 110 HE-NIRGVKDT-DNIKLANMANQTKDLNFS--------VFAGSAGYL----LSGLL-VGCAGGINALSAVLG-----GPI 169 (198)
Q Consensus 110 ~p-~i~giK~s-d~~~~~~~~~~~~~~~~~--------v~~G~d~~~----~~~l~-~G~~G~is~~~n~~P-----~~~ 169 (198)
.+ +++++=.. |+....+.+ +++.. ++.|..+.+ ...+. .|..|+|.++++-+| +-+
T Consensus 252 ~~~~~i~~d~~~dl~e~~~~~----g~~~~l~GNi~p~ll~gt~e~i~~~v~~~i~~~~~~g~Il~~Gc~i~~~tp~eNi 327 (345)
T PLN02433 252 TGVDVIGLDWTVDMADARRRL----GSDVAVQGNVDPAVLFGSKEAIEKEVRDVVKKAGPQGHILNLGHGVLVGTPEENV 327 (345)
T ss_pred cCCCEEEcCCCCCHHHHHHHh----CCCeEEEeCCCchhhCCCHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCHHHH
Confidence 54 78887666 887766554 22222 334433311 22233 355678877776543 777
Q ss_pred HHHHHHHHc
Q psy9711 170 CELYDLAKA 178 (198)
Q Consensus 170 ~~l~~~~~~ 178 (198)
..+.++.++
T Consensus 328 ~a~v~av~~ 336 (345)
T PLN02433 328 AHFFDVARE 336 (345)
T ss_pred HHHHHHHHH
Confidence 777777765
No 74
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.55 E-value=0.83 Score=38.66 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CC
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IP 85 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~p 85 (198)
++.+|..+.++.+.+ +..+.+.++. ..+..++++.+.+.|++.+.+.... .+ .+...+..+.+-+..+ +|
T Consensus 67 ~~~~~~~~~i~~vk~--~l~v~~~~~~--~~~~~~~~~~l~eagv~~I~vd~~~---G~--~~~~~~~i~~ik~~~p~v~ 137 (325)
T cd00381 67 MSIEEQAEEVRKVKG--RLLVGAAVGT--REDDKERAEALVEAGVDVIVIDSAH---GH--SVYVIEMIKFIKKKYPNVD 137 (325)
T ss_pred CCHHHHHHHHHHhcc--CceEEEecCC--ChhHHHHHHHHHhcCCCEEEEECCC---CC--cHHHHHHHHHHHHHCCCce
Confidence 567777666665542 2333333332 4677889999999999988875432 11 4455666666666654 88
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--h
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--A 143 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d 143 (198)
|+. |...+++...++.+. .+-+||-. ++..+..+.+....-++.|+. |. .
T Consensus 138 Vi~-------G~v~t~~~A~~l~~a-GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~ 209 (325)
T cd00381 138 VIA-------GNVVTAEAARDLIDA-GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTS 209 (325)
T ss_pred EEE-------CCCCCHHHHHHHHhc-CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCH
Confidence 887 445778888888753 22233310 122222332111112455664 33 2
Q ss_pred hhHHHHhhcCCCeEEecccccch
Q psy9711 144 GYLLSGLLVGCAGGINALSAVLG 166 (198)
Q Consensus 144 ~~~~~~l~~G~~G~is~~~n~~P 166 (198)
..+..++.+|++|++.|..-...
T Consensus 210 ~di~kAla~GA~~VmiGt~fa~t 232 (325)
T cd00381 210 GDIVKALAAGADAVMLGSLLAGT 232 (325)
T ss_pred HHHHHHHHcCCCEEEecchhccc
Confidence 45778899999999987764443
No 75
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=95.53 E-value=1.2 Score=37.35 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccCC-CCEEEEeCCCCcccccCHHHHHHHHcCC-C
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHE-N 112 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p-~ 112 (198)
.++.++...++|||++.+..|.-...=.+++... .|++.+.+... .|+++|.. |. +...+..+.+.+ +
T Consensus 173 ~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~c----G~--~~~~l~~~~~~g~d 246 (326)
T cd03307 173 CIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHIC----GN--TTPILEYIAQCGFD 246 (326)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEEC----CC--ChhHHHHHHHcCCC
Confidence 3567777778999999998886443311377776 45578888775 48887764 22 234566777643 5
Q ss_pred EEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh
Q psy9711 113 IRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG 144 (198)
Q Consensus 113 i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~ 144 (198)
+..+=.. |+....+.+ +++..+..+.|.
T Consensus 247 ~~~~d~~~dl~e~~~~~----g~~~~i~Gnidp 275 (326)
T cd03307 247 GISVDEKVDVKTAKEIV----GGRAALIGNVSP 275 (326)
T ss_pred eecccccCCHHHHHHHc----CCceEEEeCCCh
Confidence 6555444 776654433 445555555544
No 76
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.51 E-value=0.81 Score=36.15 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++.++..+.++.+.+..+ .+++|+|+-.+.+ .++.+.++||+.+ ++|.+ ..++.++- ...++|
T Consensus 40 t~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~---~a~~a~~aGA~Fi--vsP~~------~~~v~~~~----~~~~i~ 103 (204)
T TIGR01182 40 TLRTPVALDAIRLLRKEVP-DALIGAGTVLNPE---QLRQAVDAGAQFI--VSPGL------TPELAKHA----QDHGIP 103 (204)
T ss_pred eCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHH---HHHHHHHcCCCEE--ECCCC------CHHHHHHH----HHcCCc
Confidence 3566777788888877652 2667777665554 4677788999987 45654 44566553 344565
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C----HHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCe
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D----NIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d----~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G 156 (198)
++ .|. ++|..+.+-.+. ...-+|.= + +..+..+. .-. |++.++ .|-+ +.+.+.+.+|+.+
T Consensus 104 ~i-------PG~-~TptEi~~A~~~-Ga~~vKlFPA~~~GG~~yikal~-~pl-p~i~~~ptGGV~~~N~~~~l~aGa~~ 172 (204)
T TIGR01182 104 II-------PGV-ATPSEIMLALEL-GITALKLFPAEVSGGVKMLKALA-GPF-PQVRFCPTGGINLANVRDYLAAPNVA 172 (204)
T ss_pred EE-------CCC-CCHHHHHHHHHC-CCCEEEECCchhcCCHHHHHHHh-ccC-CCCcEEecCCCCHHHHHHHHhCCCEE
Confidence 54 344 444444433322 33445654 2 44455443 222 555555 3444 3577888999998
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
+..|. +++|+. +..++|+++..+.-+++
T Consensus 173 vg~Gs-~L~~~~------~~~~~~~~~i~~~a~~~ 200 (204)
T TIGR01182 173 CGGGS-WLVPKD------LIAAGDWDEITRLAREA 200 (204)
T ss_pred EEECh-hhcCch------hhccccHHHHHHHHHHH
Confidence 87664 555532 24567887776655554
No 77
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.51 E-value=0.34 Score=41.24 Aligned_cols=112 Identities=8% Similarity=0.035 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHhc----CC-eEEEeCC----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 8 TEEEKLKIISTLRQET----KK-TIIAGTY----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~----~~-pvi~gv~----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
|.+-|.+++..+++++ +. +|.+=++ +.+.+++++.++.+++.|+|.+-+....+.... +.-..
T Consensus 197 slenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~ 274 (338)
T cd02933 197 SIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPP 274 (338)
T ss_pred cHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccch
Confidence 3566776666666665 22 5544333 246799999999999999999999766544322 33344
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
++.+.|-+.+++||+.- .++ +++...++.+.. .+|++==. |+....++.
T Consensus 275 ~~~~~ik~~~~ipvi~~-----G~i--~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~ 328 (338)
T cd02933 275 DFLDFLRKAFKGPLIAA-----GGY--DAESAEAALADGKADLVAFGRPFIANPDLVERLK 328 (338)
T ss_pred HHHHHHHHHcCCCEEEE-----CCC--CHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHh
Confidence 56666777789999882 233 388888888654 44444333 776666654
No 78
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.48 E-value=0.18 Score=42.59 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEE--eCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIA--GTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~--gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
.-+++.-.++++.+++.+++||.+ ..|. .+..+++++++.+++.|+|++.+.+-.-... .+...-.++.++|.+++
T Consensus 115 l~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~-~~G~a~~~~i~~ik~~~ 193 (321)
T PRK10415 115 LQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL-FNGEAEYDSIRAVKQKV 193 (321)
T ss_pred hcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccc-cCCCcChHHHHHHHHhc
Confidence 335666777888887766666654 2232 2445889999999999999998875321100 00111247888898889
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM 127 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~ 127 (198)
++||+. .|--.+++...++.+..++.|+=-+ |+.-+.++
T Consensus 194 ~iPVI~------nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~ 237 (321)
T PRK10415 194 SIPVIA------NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 (321)
T ss_pred CCcEEE------eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHH
Confidence 999775 4555688889888876666666665 55555444
No 79
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.46 E-value=0.86 Score=38.84 Aligned_cols=156 Identities=11% Similarity=0.056 Sum_probs=91.8
Q ss_pred HHHHHHHHh-cCCeEEEeCCCC-------cHHHHHHHHHHHHhcCCCEEEEc--CCCCc--CCCCCHHHHHHHHHHHHcc
Q psy9711 14 KIISTLRQE-TKKTIIAGTYCE-------STRATIDLTQKAAKAGANAALIL--CPYYF--QKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 14 ~l~~~~~~~-~~~pvi~gv~~~-------~~~~~i~~a~~a~~~Gad~v~~~--~P~y~--~~~~~~~~i~~y~~~i~~~ 81 (198)
++++...+. .++||++.++.+ +.+|-.+.++.+.+ ++|++.+- .|..- ....+++.+.+..++|-+.
T Consensus 126 ~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 126 ALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA 204 (344)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 334433333 289999999765 56788888888766 69998764 45431 1112478888889999888
Q ss_pred CC-----CCEEEEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-C----------------------------HHHH
Q psy9711 82 SP-----IPVIIYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-D----------------------------NIKL 124 (198)
Q Consensus 82 ~~-----~pi~lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-d----------------------------~~~~ 124 (198)
++ +||++==.|. ++.+.+.+++ +--++.|+.-+ . +..+
T Consensus 205 ~~~~~~~~PV~vKlsp~-----~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v 279 (344)
T PRK05286 205 QAELHGYVPLLVKIAPD-----LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVI 279 (344)
T ss_pred HhccccCCceEEEeCCC-----CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHH
Confidence 86 9999866554 3332233332 22234444433 1 0112
Q ss_pred HHHHhhcCCCCeEEE-ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 125 ANMANQTKDLNFSVF-AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 125 ~~~~~~~~~~~~~v~-~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
.++. +..++++.|+ +| .. +.....+..|++++..+.+.+. |.++.++.+.+
T Consensus 280 ~~l~-~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L 336 (344)
T PRK05286 280 RRLY-KELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGL 336 (344)
T ss_pred HHHH-HHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence 2222 2333345554 22 22 2456677899999988888754 88877776543
No 80
>PLN02591 tryptophan synthase
Probab=95.45 E-value=1.2 Score=36.41 Aligned_cols=141 Identities=11% Similarity=0.084 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcH-H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCEST-R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~-~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+|.+.-.++++.+.+..++|++.=...+.. + -.=+..+.++++|+|++++.. .. .++..+|. ..++..++
T Consensus 61 ~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipD-----LP--~ee~~~~~-~~~~~~gl 132 (250)
T PLN02591 61 TTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPD-----LP--LEETEALR-AEAAKNGI 132 (250)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCC-----CC--HHHHHHHH-HHHHHcCC
Confidence 455566667776664447886544444332 2 234568889999999999852 22 55555544 45567898
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc-CCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecCh----hhHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH-HENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSA----GYLL 147 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~~ 147 (198)
..+..=.|. .+.+-++++++ -+.++.+ +.. +...+.+.+++. .+..++.|.+ +...
T Consensus 133 ~~I~lv~Pt-----t~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~ 205 (250)
T PLN02591 133 ELVLLTTPT-----TPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAK 205 (250)
T ss_pred eEEEEeCCC-----CCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHH
Confidence 888877774 35666777774 3444433 322 333323333232 4566777765 2455
Q ss_pred HHhhcCCCeEEeccc
Q psy9711 148 SGLLVGCAGGINALS 162 (198)
Q Consensus 148 ~~l~~G~~G~is~~~ 162 (198)
.....|+||++.|.+
T Consensus 206 ~~~~~GADGvIVGSa 220 (250)
T PLN02591 206 QIAGWGADGVIVGSA 220 (250)
T ss_pred HHHhcCCCEEEECHH
Confidence 667889999999975
No 81
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.42 E-value=0.24 Score=41.69 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEeCC--C-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQETKKTIIAGTY--C-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~~~pvi~gv~--~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
++--.++++.+++.+++||.+-+. . .+..+.++.++.+++.|+|++.+....-.. ..+.....++.+.|.+.+++|
T Consensus 116 ~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~-~~~~~~~~~~i~~i~~~~~ip 194 (319)
T TIGR00737 116 PDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ-GYSGEANWDIIARVKQAVRIP 194 (319)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccc-cCCCchhHHHHHHHHHcCCCc
Confidence 444456677766655788877542 1 223467899999999999999886432110 001223468889999999999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~ 127 (198)
|+. .|---+++...++.+.....|+=.. |+..+.++
T Consensus 195 vi~------nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~ 235 (319)
T TIGR00737 195 VIG------NGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQI 235 (319)
T ss_pred EEE------eCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence 875 3455688888888865544444444 65544444
No 82
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.37 E-value=1.4 Score=36.78 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=77.5
Q ss_pred CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccC
Q psy9711 24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAALIL--CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 100 (198)
Q Consensus 24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~ 100 (198)
..|+++++... +.+...++++.+.+.|++++.+. +|.- .. . ...+..+.+.+.+++||++=.. ++
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~--~~--~-~~~~~i~~l~~~~~~pvivK~v-------~s 182 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVL--GR--R-LTWDDLAWLRSQWKGPLILKGI-------LT 182 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC--CC--C-CCHHHHHHHHHhcCCCEEEeec-------CC
Confidence 45777776543 67888888899999999998874 3431 11 1 2335677788888899998642 56
Q ss_pred HHHHHHHHcCC-CEEEE-------eeC---CHHHHHHHHhhcCCCCeEEEe-cC---hhhHHHHhhcCCCeEEeccc
Q psy9711 101 VDTLVKLAHHE-NIRGV-------KDT---DNIKLANMANQTKDLNFSVFA-GS---AGYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 101 ~~~l~~L~~~p-~i~gi-------K~s---d~~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~G~~G~is~~~ 162 (198)
++...++.+.. ..+.+ .+. ++..+.++. +..++++.|+. |. ......++.+|++|+..+..
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~-~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~ 258 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIV-AAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRP 258 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHH-HHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 77777776532 22222 111 233344443 22333455543 31 23467788999999998874
No 83
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.36 E-value=0.53 Score=40.71 Aligned_cols=115 Identities=10% Similarity=0.084 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeCC---------------------CCcHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGTY---------------------CESTRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv~---------------------~~~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
|.+.|.+++..+++++ +.||.+=++ +.+.++++++++..+++|+|.+-+....
T Consensus 196 slenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 196 SLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred CHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 5678887777776666 335554333 3467999999999999999999997543
Q ss_pred Cc-----CCCC-CHHH-HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711 61 YF-----QKKM-TEDL-IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 61 y~-----~~~~-~~~~-i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~ 128 (198)
+. .+.. .+++ ...+-+.+.+.+++||+. +|.--+++...++.+. -.++++=-. |+....++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~------~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 349 (382)
T cd02931 276 YDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM------AGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred CcccccccCCccCCcchhHHHHHHHHHHCCCCEEE------eCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHH
Confidence 21 1110 0122 234446666777899886 4444588888888753 356665444 777777765
No 84
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.32 E-value=0.95 Score=38.50 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=40.7
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEE------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGANAALI------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
+..+|+| ++-.+.+.+++.|+..+++|++.+-- ..||-++.- .++-++++++.++.+++|++-
T Consensus 93 ~~~~IAGPCsiEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~--g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 93 KPVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGL--GEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred ceEEEEecCccCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccc--cHHHHHHHHHHHHHcCCcEEE
Confidence 3556777 44457888999999999999983221 123333321 344455777777778888764
No 85
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.29 E-value=0.22 Score=40.82 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=63.2
Q ss_pred CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCC---CCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711 24 KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQK---KMTEDLIYEHFISVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 24 ~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~---~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t 95 (198)
+.|+ +..+.+.. .|+.++++|+|++++.... +..+ ..|-++++.|-+.|++.++.|+++=|.|. +
T Consensus 14 g~~i~m~tayD~~------sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf-~ 86 (263)
T TIGR00222 14 EEKIVAITAYDYS------FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPF-M 86 (263)
T ss_pred CCcEEEEeccCHH------HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCc-C
Confidence 3444 45555532 4677788999999986422 2221 14699999999999999999999999996 5
Q ss_pred ccccCHHHH----HHHHcCCCEEEEeeC
Q psy9711 96 NIDISVDTL----VKLAHHENIRGVKDT 119 (198)
Q Consensus 96 g~~l~~~~l----~~L~~~p~i~giK~s 119 (198)
++. +++.. .+|.+.-+..|+|.+
T Consensus 87 sy~-~~e~a~~na~rl~~eaGa~aVkiE 113 (263)
T TIGR00222 87 SYA-TPEQALKNAARVMQETGANAVKLE 113 (263)
T ss_pred CCC-CHHHHHHHHHHHHHHhCCeEEEEc
Confidence 665 45543 455555689999999
No 86
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=95.24 E-value=0.21 Score=41.42 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCeEE---EeCC---------CCcHHHHHHHHHHH-HhcCCCEEEE--cCCCCcCCCC
Q psy9711 5 FKSTEEEKLKIISTLRQET---KKTII---AGTY---------CESTRATIDLTQKA-AKAGANAALI--LCPYYFQKKM 66 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~---------~~~~~~~i~~a~~a-~~~Gad~v~~--~~P~y~~~~~ 66 (198)
..++.+|..++.+.+++.+ +++|= .++| +.++. ..+.++.+ ++.|+|.+-+ .+.+-..+.
T Consensus 106 s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t-~~eea~~f~~~tg~DyLAvaiG~~hg~~~~- 183 (281)
T PRK06806 106 SHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLT-STTEAKRFAEETDVDALAVAIGNAHGMYNG- 183 (281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeC-CHHHHHHHHHhhCCCEEEEccCCCCCCCCC-
Confidence 4678999999999999888 66652 2344 11122 23344444 4679999999 333322221
Q ss_pred CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 67 TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 67 ~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
.+.==++.+++|.+.+++|++++= |..++++.+.++.+.. +.+|=..
T Consensus 184 ~~~l~~~~L~~i~~~~~iPlV~hG-----~SGI~~e~~~~~i~~G-~~kinv~ 230 (281)
T PRK06806 184 DPNLRFDRLQEINDVVHIPLVLHG-----GSGISPEDFKKCIQHG-IRKINVA 230 (281)
T ss_pred CCccCHHHHHHHHHhcCCCEEEEC-----CCCCCHHHHHHHHHcC-CcEEEEh
Confidence 133334678888888899998853 3457888888887543 4444333
No 87
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.24 E-value=0.21 Score=41.00 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=60.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCccccc
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI 99 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l 99 (198)
++.++.+.. -++.++++|+|++++.... +..++ .|-+++..|.+.|++.++.|.++=|.|. .++..
T Consensus 18 ~~~tayD~~------sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pf-g~y~~ 90 (264)
T PRK00311 18 VMLTAYDYP------FAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPF-GSYQA 90 (264)
T ss_pred EEEeCCCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCC-CCccC
Confidence 455666543 3566778899999865221 11121 3699999999999999999988889984 45556
Q ss_pred CHHH----HHHHHcCCCEEEEeeC
Q psy9711 100 SVDT----LVKLAHHENIRGVKDT 119 (198)
Q Consensus 100 ~~~~----l~~L~~~p~i~giK~s 119 (198)
+++. ..++.+.-.+.|+|.+
T Consensus 91 ~~~~av~~a~r~~~~aGa~aVkiE 114 (264)
T PRK00311 91 SPEQALRNAGRLMKEAGAHAVKLE 114 (264)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEc
Confidence 6654 3455555689999999
No 88
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.22 E-value=0.41 Score=39.46 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCE-STRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
+.+.-.++++.+.+.+++||++.++.. +.++..+.++.++++|+|++.+..
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 345566778887766689999987753 456899999999999999999864
No 89
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.17 E-value=1.4 Score=35.96 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.++.+.+.+++||+. -+.-+..- ++..+.++|||++.+..-.. + ++.+.+.++... ..++-+++-=
T Consensus 101 ~~l~~v~~~v~iPvl~--kdfi~~~~--qi~~a~~~GAD~VlLi~~~l---~--~~~l~~li~~a~-~lGl~~lvev--- 167 (260)
T PRK00278 101 EYLRAARAAVSLPVLR--KDFIIDPY--QIYEARAAGADAILLIVAAL---D--DEQLKELLDYAH-SLGLDVLVEV--- 167 (260)
T ss_pred HHHHHHHHhcCCCEEe--eeecCCHH--HHHHHHHcCCCEEEEEeccC---C--HHHHHHHHHHHH-HcCCeEEEEe---
Confidence 4455555555899985 33333333 68889999999999997652 2 556666665554 4577766532
Q ss_pred CcccccCHHHHHHHHc-CCCEEEEee----C---CHHHHHHHHhhcCCCC-eEEE-ecCh--hhHHHHhhcCCCeEEecc
Q psy9711 94 VTNIDISVDTLVKLAH-HENIRGVKD----T---DNIKLANMANQTKDLN-FSVF-AGSA--GYLLSGLLVGCAGGINAL 161 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~-~p~i~giK~----s---d~~~~~~~~~~~~~~~-~~v~-~G~d--~~~~~~l~~G~~G~is~~ 161 (198)
-+.+.+.+..+ -+.++|+-. + |+....++.. ..+.+ ..|- +|.. +.....+..|++|++-|.
T Consensus 168 -----h~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~-~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGs 241 (260)
T PRK00278 168 -----HDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAP-LIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGE 241 (260)
T ss_pred -----CCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHH-hCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECH
Confidence 12334455444 467899865 2 5666666663 33333 3332 3432 355667789999999887
Q ss_pred cccch
Q psy9711 162 SAVLG 166 (198)
Q Consensus 162 ~n~~P 166 (198)
+-.-+
T Consensus 242 aI~~~ 246 (260)
T PRK00278 242 SLMRA 246 (260)
T ss_pred HHcCC
Confidence 74433
No 90
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=95.14 E-value=0.41 Score=42.46 Aligned_cols=171 Identities=10% Similarity=0.012 Sum_probs=96.5
Q ss_pred cCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
......+||......+++.+ + +-..+.+++.++++.+++++.+.+.|+.++|+.+-. ...+ .....++
T Consensus 202 q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~NiT~~~~~em~~ra~~~~e~G~~~~mv~~~~-~G~~-----~l~~l~~ 275 (468)
T PRK04208 202 QPFNRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTMEEMYKRAEFAKELGSPIVMIDVVT-AGWT-----ALQSLRE 275 (468)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhCCcceEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeccc-cccH-----HHHHHHH
Confidence 34566788888766666655 3 334668888779999999999999999999986443 3332 2444555
Q ss_pred HHccCCCCEEEEeCCCC--c---ccccCHHHHH---HHH--c---CCCEEEEeeC-CHH---HHHHHHhhc---------
Q psy9711 78 VADNSPIPVIIYNNTFV--T---NIDISVDTLV---KLA--H---HENIRGVKDT-DNI---KLANMANQT--------- 131 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~--t---g~~l~~~~l~---~L~--~---~p~i~giK~s-d~~---~~~~~~~~~--------- 131 (198)
-+...++||..|-.-.. + ...++..++. ||+ + .|++ +=|.. +.. ++.+.++..
T Consensus 276 ~~~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~~t~-~Gk~~~~~~~~~~~~~~l~~~~~~~~~~~~ 354 (468)
T PRK04208 276 WCRDNGLALHAHRAMHAAFTRNPNHGISFRVLAKLLRLIGVDHLHTGTV-VGKLEGDRAEVLGYYDILREDFVPEDRSRG 354 (468)
T ss_pred hhhcCCcEEEecCCcccccccCcCCCCCHHHHHHHHHHcCCCccccCCc-cCCccCCHHHHHHHHHHHhhhhcccccccc
Confidence 54456788866543110 0 1134444555 444 2 2666 44555 333 333322110
Q ss_pred ---------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCCH
Q psy9711 132 ---------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGKW 181 (198)
Q Consensus 132 ---------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd~ 181 (198)
..+-|.+.+|.-+ .+...+ ..|-|-++...+.++ | +.+++-|+++.+|.-
T Consensus 355 ~~~~q~~~~~k~~~Pv~SGG~~~g~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~ 425 (468)
T PRK04208 355 IFFDQDWGSIKPVFPVASGGIHPGHMPALLDIFGDDVVLQFGGGTHGHPDGTAAGATANRVALEACVEARN 425 (468)
T ss_pred ccccccccCCCCceEecCCCCChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHHHhcCc
Confidence 1234667766433 232222 356554443333332 2 567777888777643
No 91
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.12 E-value=1.3 Score=34.98 Aligned_cols=131 Identities=13% Similarity=0.131 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.++.+.+.+++||+++-+-.+. ++++.+.++|+|++.+..+... ++.+.++++... ..++.+++--.
T Consensus 62 ~~~~~i~~~v~iPi~~~~~i~~~----~~v~~~~~~Gad~v~l~~~~~~-----~~~~~~~~~~~~-~~g~~~~v~v~-- 129 (217)
T cd00331 62 EDLRAVREAVSLPVLRKDFIIDP----YQIYEARAAGADAVLLIVAALD-----DEQLKELYELAR-ELGMEVLVEVH-- 129 (217)
T ss_pred HHHHHHHHhcCCCEEECCeecCH----HHHHHHHHcCCCEEEEeeccCC-----HHHHHHHHHHHH-HcCCeEEEEEC--
Confidence 34455555448999976432222 3788899999999999877532 445555554442 24555433211
Q ss_pred CcccccCHHHHHHHHcC-CCEEEEee------C-CHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEecc
Q psy9711 94 VTNIDISVDTLVKLAHH-ENIRGVKD------T-DNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINAL 161 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~-p~i~giK~------s-d~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~ 161 (198)
+.+.+.+..+. ..++|+=. . +...+.++.+ ..+.+..++ .|-. +.+...+..|++|++.|.
T Consensus 130 ------~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~-~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGs 202 (217)
T cd00331 130 ------DEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAP-LIPKDVILVSESGISTPEDVKRLAEAGADAVLIGE 202 (217)
T ss_pred ------CHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHH-hCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECH
Confidence 45556666654 45665542 1 5555666553 322333444 3332 356677889999999887
Q ss_pred cc
Q psy9711 162 SA 163 (198)
Q Consensus 162 ~n 163 (198)
+-
T Consensus 203 ai 204 (217)
T cd00331 203 SL 204 (217)
T ss_pred HH
Confidence 63
No 92
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.08 E-value=1.2 Score=39.04 Aligned_cols=169 Identities=14% Similarity=0.084 Sum_probs=97.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||......+++.+ +.. ..+.+++. +++.+++++.+++.|+.++|+.+-.+ ..+ ..+..+
T Consensus 185 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~-G~~-----~l~~l~ 257 (412)
T TIGR03326 185 SQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITAP-VREMERRAELVADLGGQYVMVDVVVC-GWS-----ALQYIR 257 (412)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCcceEEEEecCC-HHHHHHHHHHHHHhCCCeEEEEeecc-chH-----HHHHHH
Confidence 345667889988777777665 333 45677764 89999999999999999999975443 222 234444
Q ss_pred HHHccCCCCEEEEeCCCCcc-------cccCHHHHHH---HH--c---CCCEEEEeeC-CH---HHHHHHHhhc---CCC
Q psy9711 77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLVK---LA--H---HENIRGVKDT-DN---IKLANMANQT---KDL 134 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~---L~--~---~p~i~giK~s-d~---~~~~~~~~~~---~~~ 134 (198)
+-+...++||..|-. .+| ..++..++.+ |+ + .|++-+=|.. +. .++.+..++. ..+
T Consensus 258 ~~~~~~~l~ih~Hra--~~ga~~~~~~~Gis~~vl~kl~RLaGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~ 335 (412)
T TIGR03326 258 ELTEDLGLAIHAHRA--MHAAFTRNPKHGISMFALAKLYRLIGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQKWHHIKP 335 (412)
T ss_pred HhhccCCeEEEEcCC--cccccccCCCCcCcHHHHHHHHHHcCCCeeeeCCCccCCCCCCHHHHHHHHHHHhCcccCCCC
Confidence 444455777776533 221 1344555554 44 2 2555243555 33 3343333221 134
Q ss_pred CeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711 135 NFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK 180 (198)
Q Consensus 135 ~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd 180 (198)
-|.+.+|.-+ .+...+ ..|-|-.+...+.++ | +.+++-|+++.+|.
T Consensus 336 ~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~ 393 (412)
T TIGR03326 336 VFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAIDAIIEGI 393 (412)
T ss_pred ceEecCCCCChhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHHHHHHHHcCC
Confidence 5777776443 233332 356554444433342 2 57788888888874
No 93
>PRK08185 hypothetical protein; Provisional
Probab=94.98 E-value=0.54 Score=39.03 Aligned_cols=99 Identities=8% Similarity=0.103 Sum_probs=64.8
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEEE--e-CCCC--c----HHH----HHHHHHHHH-hcCCCEEEE-----cCCCC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTIIA--G-TYCE--S----TRA----TIDLTQKAA-KAGANAALI-----LCPYY 61 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi~--g-v~~~--~----~~~----~i~~a~~a~-~~Gad~v~~-----~~P~y 61 (198)
...|+.+|..++.+.+++.+ +++|=+ | ++.. . ..+ ..+.++... +.|+|.+.+ ...|-
T Consensus 99 ~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~ 178 (283)
T PRK08185 99 GSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYP 178 (283)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcC
Confidence 35689999999999999887 555522 2 2211 0 011 234444444 459999988 44433
Q ss_pred c--CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 62 F--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 62 ~--~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
. +|..+ ++..++|.+.+++|++++ .|..++.+.+++..+..
T Consensus 179 ~~~kp~L~----~e~l~~I~~~~~iPLVlH-----Ggsg~~~e~~~~ai~~G 221 (283)
T PRK08185 179 KDKKPELQ----MDLLKEINERVDIPLVLH-----GGSANPDAEIAESVQLG 221 (283)
T ss_pred CCCCCCcC----HHHHHHHHHhhCCCEEEE-----CCCCCCHHHHHHHHHCC
Confidence 3 34422 678888888889999985 45668899998887654
No 94
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=94.97 E-value=0.72 Score=40.01 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEE--cCCCCcC---C----CCCHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALI--LCPYYFQ---K----KMTEDLIYEHFI 76 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~--~~P~y~~---~----~~~~~~i~~y~~ 76 (198)
..++..+.++.+.+.. .+|||+.+.. .+.++-.+.++..++.|+|++-+ ..|.... . ..+++.+.+..+
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~ 175 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG 175 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence 4666676666665555 7899999944 78999999999999999999986 3555421 0 123566666667
Q ss_pred HHHccCCCCEEEEeCCCCc
Q psy9711 77 SVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~t 95 (198)
.+-+.+++||++==.|..+
T Consensus 176 ~Vk~~~~iPv~vKLsPn~t 194 (385)
T PLN02495 176 WINAKATVPVWAKMTPNIT 194 (385)
T ss_pred HHHHhhcCceEEEeCCChh
Confidence 7777778999997777543
No 95
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.87 E-value=0.6 Score=39.94 Aligned_cols=141 Identities=15% Similarity=0.224 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHhc---------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.+|.+|+.+.++.+.... +..|-+.++. .++..++++...++|+|.+++-...-. .+.+.+..+
T Consensus 69 ~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~--~~~~~er~~~L~~agvD~ivID~a~g~-----s~~~~~~ik 141 (352)
T PF00478_consen 69 NMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGT--RDDDFERAEALVEAGVDVIVIDSAHGH-----SEHVIDMIK 141 (352)
T ss_dssp SSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEES--STCHHHHHHHHHHTT-SEEEEE-SSTT-----SHHHHHHHH
T ss_pred CCCHHHHHHHHhhhccccccccccccccceEEEEecC--CHHHHHHHHHHHHcCCCEEEccccCcc-----HHHHHHHHH
Confidence 578899999998887531 4444444443 446788888899999999998766532 566667777
Q ss_pred HHHccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-C-----H---------HHHHHHHh---hcCCCCeE
Q psy9711 77 SVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-D-----N---------IKLANMAN---QTKDLNFS 137 (198)
Q Consensus 77 ~i~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d-----~---------~~~~~~~~---~~~~~~~~ 137 (198)
.|-+..+ +||+.=| -.+.+....|.+.. +-++|.. . . +++..+.. ....-+..
T Consensus 142 ~ik~~~~~~~viaGN-------V~T~e~a~~L~~aG-ad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~ 213 (352)
T PF00478_consen 142 KIKKKFPDVPVIAGN-------VVTYEGAKDLIDAG-ADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVP 213 (352)
T ss_dssp HHHHHSTTSEEEEEE-------E-SHHHHHHHHHTT--SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSE
T ss_pred HHHHhCCCceEEecc-------cCCHHHHHHHHHcC-CCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCc
Confidence 8877775 8888744 57889999998754 8888887 1 1 23332221 11122455
Q ss_pred EEe-c---ChhhHHHHhhcCCCeEEecc
Q psy9711 138 VFA-G---SAGYLLSGLLVGCAGGINAL 161 (198)
Q Consensus 138 v~~-G---~d~~~~~~l~~G~~G~is~~ 161 (198)
|.. | ....+.-++.+|++.++.|.
T Consensus 214 iIADGGi~~sGDi~KAla~GAd~VMlG~ 241 (352)
T PF00478_consen 214 IIADGGIRTSGDIVKALAAGADAVMLGS 241 (352)
T ss_dssp EEEESS-SSHHHHHHHHHTT-SEEEEST
T ss_pred eeecCCcCcccceeeeeeecccceeech
Confidence 553 3 23467889999999998774
No 96
>PRK15063 isocitrate lyase; Provisional
Probab=94.84 E-value=0.31 Score=42.54 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHhc---CCe--EEEeCCC-------------------------------CcHHHHHHHHHHHHhcC
Q psy9711 7 STEEEKLKIISTLRQET---KKT--IIAGTYC-------------------------------ESTRATIDLTQKAAKAG 50 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~p--vi~gv~~-------------------------------~~~~~~i~~a~~a~~~G 50 (198)
.+.+|..+=+++++.+. ++| |++=+-+ ..++++|++++.+.+ |
T Consensus 199 vp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-G 277 (428)
T PRK15063 199 VPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-Y 277 (428)
T ss_pred ecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-C
Confidence 56777777777777664 444 4444433 358999999999999 9
Q ss_pred CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHHHHHH
Q psy9711 51 ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTLVKLA 108 (198)
Q Consensus 51 ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l~~L~ 108 (198)
||.+.+-... ++ .+++.++-+.|-...+.-++.||. |..+ ...++.+++++..
T Consensus 278 AD~iw~Et~~---~d--~ee~~~fa~~v~~~~P~~~layn~sPsfnW~~~~~~~~~~~f~ 332 (428)
T PRK15063 278 ADLIWCETST---PD--LEEARRFAEAIHAKFPGKLLAYNCSPSFNWKKNLDDATIAKFQ 332 (428)
T ss_pred CCEEEeCCCC---CC--HHHHHHHHHhhcccCccceeecCCCCCcccccccCHHHHHHHH
Confidence 9999886422 44 777777766664332333899984 5432 2348888855443
No 97
>PRK04302 triosephosphate isomerase; Provisional
Probab=94.78 E-value=1.6 Score=34.64 Aligned_cols=138 Identities=14% Similarity=0.006 Sum_probs=77.2
Q ss_pred CCeEEEeCCCC-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711 24 KKTIIAGTYCE-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 98 (198)
Q Consensus 24 ~~pvi~gv~~~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~ 98 (198)
.+|++++-... .|.+ ..++.++++|+|++++...--. .. .+++.++++... ..++..+ +..|.
T Consensus 56 ~i~v~aq~~~~~~~G~~tg~--~~~~~l~~~G~~~vii~~ser~-~~--~~e~~~~v~~a~-~~Gl~~I-~~v~~----- 123 (223)
T PRK04302 56 DIPVYAQHVDPVEPGSHTGH--ILPEAVKDAGAVGTLINHSERR-LT--LADIEAVVERAK-KLGLESV-VCVNN----- 123 (223)
T ss_pred CCeEEeccCCCCCCCCchhh--hHHHHHHHcCCCEEEEeccccc-cC--HHHHHHHHHHHH-HCCCeEE-EEcCC-----
Confidence 56776653222 2333 3377778899999988753211 22 556666666554 4687666 34432
Q ss_pred cCHHHHHHHHcC-CCEEEE---------ee-C--CHHHHH---HHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEE
Q psy9711 99 ISVDTLVKLAHH-ENIRGV---------KD-T--DNIKLA---NMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGI 158 (198)
Q Consensus 99 l~~~~l~~L~~~-p~i~gi---------K~-s--d~~~~~---~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~i 158 (198)
.+.+.++.+. +.++++ +. + ++..+. +.+++ ..++..++.|.. +.....+..|+||++
T Consensus 124 --~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~-~~~~~pvi~GggI~~~e~~~~~~~~gadGvl 200 (223)
T PRK04302 124 --PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKK-VNPDVKVLCGAGISTGEDVKAALELGADGVL 200 (223)
T ss_pred --HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHcCCCCEEE
Confidence 4566666654 556663 12 1 233333 33422 234566665543 234455679999999
Q ss_pred ecccccchHHHHHHHHHH
Q psy9711 159 NALSAVLGGPICELYDLA 176 (198)
Q Consensus 159 s~~~n~~P~~~~~l~~~~ 176 (198)
.|.+.+-++-+.++.+.+
T Consensus 201 VGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 201 LASGVVKAKDPEAALRDL 218 (223)
T ss_pred EehHHhCCcCHHHHHHHH
Confidence 998876554454554433
No 98
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.77 E-value=0.35 Score=39.52 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=60.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCccccc
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI 99 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l 99 (198)
++.++-+.. .++.++++|+|++++.... +..|+ .|-+++..|.+.|++.++.|+++=|.|. .++.-
T Consensus 15 ~~~~ayD~~------sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~f-g~y~~ 87 (254)
T cd06557 15 VMLTAYDYP------TAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPF-GSYQT 87 (254)
T ss_pred EEEeCCCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCC-CcccC
Confidence 455666532 3566778899999865331 11222 3699999999999999999988889884 34444
Q ss_pred CHHHH----HHHHcCCCEEEEeeC
Q psy9711 100 SVDTL----VKLAHHENIRGVKDT 119 (198)
Q Consensus 100 ~~~~l----~~L~~~p~i~giK~s 119 (198)
+++.. .++.+--.+.|+|.+
T Consensus 88 ~~~~av~~a~r~~~~aGa~aVkiE 111 (254)
T cd06557 88 SPEQALRNAARLMKEAGADAVKLE 111 (254)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEc
Confidence 45543 445455789999999
No 99
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.77 E-value=1.5 Score=34.14 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
|+...=.+.++...+.. +..+++++--.+... ..++.+.++|||.+.+. +...+. +..++.++ +++.+++
T Consensus 34 l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~--~~~~~~~~~Gad~i~vh--~~~~~~-~~~~~i~~----~~~~g~~ 104 (206)
T TIGR03128 34 LIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGE--YEAEQAFAAGADIVTVL--GVADDA-TIKGAVKA----AKKHGKE 104 (206)
T ss_pred HHHHhCHHHHHHHHHHCCCCEEEEEEeeccchH--HHHHHHHHcCCCEEEEe--ccCCHH-HHHHHHHH----HHHcCCE
Confidence 33344456777777765 667777752222221 25778889999988854 221110 12344443 4556899
Q ss_pred EEEE-eCCCCcccccCHHHHHHHHc-CCCEEEEee-----C----CHHHHHHHHhhcCCCCeEEEecCh-hhHHHHhhcC
Q psy9711 86 VIIY-NNTFVTNIDISVDTLVKLAH-HENIRGVKD-----T----DNIKLANMANQTKDLNFSVFAGSA-GYLLSGLLVG 153 (198)
Q Consensus 86 i~lY-n~P~~tg~~l~~~~l~~L~~-~p~i~giK~-----s----d~~~~~~~~~~~~~~~~~v~~G~d-~~~~~~l~~G 153 (198)
+++- ..|. + +.+.+.+..+ ...++++-- + .+.++.++.+......+.+-.|-. +.....+..|
T Consensus 105 ~~~~~~~~~-t----~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~G 179 (206)
T TIGR03128 105 VQVDLINVK-D----KVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLG 179 (206)
T ss_pred EEEEecCCC-C----hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcC
Confidence 9874 2342 1 3455555555 355665421 1 233445544222223444445554 3566778899
Q ss_pred CCeEEeccc
Q psy9711 154 CAGGINALS 162 (198)
Q Consensus 154 ~~G~is~~~ 162 (198)
+++++.|.+
T Consensus 180 a~~v~vGsa 188 (206)
T TIGR03128 180 PDIVIVGGA 188 (206)
T ss_pred CCEEEEeeh
Confidence 999998865
No 100
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.76 E-value=1.2 Score=36.55 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=47.6
Q ss_pred CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
++|||+-+-..|. .+..++++.+++.||+++.+. -|.|+..+ .++.+.+.+.+++||+..|+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~------~~~l~~v~~~v~iPvl~kdf 119 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS------LEYLRAARAAVSLPVLRKDF 119 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC------HHHHHHHHHhcCCCEEeeee
Confidence 6899998743332 356899999999999999886 46677654 46777788888999998663
No 101
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=94.73 E-value=0.78 Score=38.86 Aligned_cols=97 Identities=9% Similarity=0.098 Sum_probs=63.3
Q ss_pred CHHHHHHHHH----HHHHhc--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC---CCCHHHH
Q psy9711 8 TEEEKLKIIS----TLRQET--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQK---KMTEDLI 71 (198)
Q Consensus 8 t~~Er~~l~~----~~~~~~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~---~~~~~~i 71 (198)
|.+.|.+++. .+.+.+ +.||.+=++ +.+.+++++.++..++.|+|.+-+....+... .......
T Consensus 199 sl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~ 278 (336)
T cd02932 199 SLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQ 278 (336)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCcccc
Confidence 4455555444 444444 566765333 34689999999999999999998764332211 0012223
Q ss_pred HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
.++.+.|.+.+++||+. .|.-.+++...++.+.
T Consensus 279 ~~~~~~ir~~~~iPVi~------~G~i~t~~~a~~~l~~ 311 (336)
T cd02932 279 VPFAERIRQEAGIPVIA------VGLITDPEQAEAILES 311 (336)
T ss_pred HHHHHHHHhhCCCCEEE------eCCCCCHHHHHHHHHc
Confidence 56778888888999986 4555688888888753
No 102
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.61 E-value=0.57 Score=38.94 Aligned_cols=80 Identities=9% Similarity=-0.039 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeC---------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGT---------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH 74 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y 74 (198)
.|.+|-.+.++.+++.+ +..|.+.+ +..+.+..++.++.+.++|+|.+.+.-.. ...+ |.++.+.
T Consensus 113 ~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~-G~~~--P~~v~~l 189 (287)
T PRK05692 113 CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTI-GVGT--PGQVRAV 189 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecccc-CccC--HHHHHHH
Confidence 45556555555555555 44443221 12356677777777777777766554333 2223 7777777
Q ss_pred HHHHHccCC-CCEEEE
Q psy9711 75 FISVADNSP-IPVIIY 89 (198)
Q Consensus 75 ~~~i~~~~~-~pi~lY 89 (198)
++.+.+..+ +|+-+|
T Consensus 190 v~~l~~~~~~~~i~~H 205 (287)
T PRK05692 190 LEAVLAEFPAERLAGH 205 (287)
T ss_pred HHHHHHhCCCCeEEEE
Confidence 777777664 666543
No 103
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=94.60 E-value=0.66 Score=40.68 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=95.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||......+++.+ +..+ .+.+++ ++++.+++++.++++|++++|+.+-.+. .+ -.+
T Consensus 201 ~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~~a~~~G~~~vmv~~~~~G-~~--------al~ 270 (424)
T cd08208 201 DVDWCPLEERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHDVAVRNGANALLINAMPVG-LS--------AVR 270 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeeeccc-HH--------HHH
Confidence 345566789988776666665 3444 458887 6999999999999999999999754432 22 245
Q ss_pred HHHccCCCCEEEEeCCCC-----cccccCHHHHHHHHcC--------CCEEEEeeC-CHHHHHHH---HhhcC---CCCe
Q psy9711 77 SVADNSPIPVIIYNNTFV-----TNIDISVDTLVKLAHH--------ENIRGVKDT-DNIKLANM---ANQTK---DLNF 136 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~-----tg~~l~~~~l~~L~~~--------p~i~giK~s-d~~~~~~~---~~~~~---~~~~ 136 (198)
.+++.+++||..+-.-.. ...-++.-++.+|.++ |+.-| |.. ......+. .++.. .+-|
T Consensus 271 ~L~~~~~l~ihaHra~~ga~~r~~~~Gis~~vl~Kl~RLaGaD~ih~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~k~~~ 349 (424)
T cd08208 271 MLRKHAQVPLIAHFPFIASFSRLEKYGIHSRVMTKLQRLAGLDVVIMPGFGP-RMMTPEEEVLECVIACLEPMGPIKPCL 349 (424)
T ss_pred HHHhcCCCeEEeccCccccccCCCCCCCcHHHHHHHHHHcCCCeeeccCCCC-CccchHHHHHHHHHHHhCcccCCCCce
Confidence 555556788775542110 1123555556655532 23322 444 32333222 21111 2347
Q ss_pred EEEecChh--hHHHHh-hcC-CCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711 137 SVFAGSAG--YLLSGL-LVG-CAGGINALSAVL--G-------GPICELYDLAKAGK 180 (198)
Q Consensus 137 ~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~--P-------~~~~~l~~~~~~gd 180 (198)
.|.+|.-+ .+...+ ..| .|-++...+.++ | ..+++-|+++.+|.
T Consensus 350 Pv~SGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHP~G~aaGa~A~RqA~ea~~~G~ 406 (424)
T cd08208 350 PVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAIEAGI 406 (424)
T ss_pred EecccCCCHhHHHHHHHHhCCCCEEEecCccccCCCCChHHHHHHHHHHHHHHHcCC
Confidence 77776532 233333 467 365544444442 2 57778888888884
No 104
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.55 E-value=0.49 Score=39.99 Aligned_cols=77 Identities=19% Similarity=0.191 Sum_probs=58.7
Q ss_pred HHHHHHhcCCCEEEEcCCC------Cc-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHH----HHHHcC
Q psy9711 42 LTQKAAKAGANAALILCPY------YF-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL----VKLAHH 110 (198)
Q Consensus 42 ~a~~a~~~Gad~v~~~~P~------y~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~~ 110 (198)
.++.+.++|+|.+++.... |- ....|-++++.|.+.|++.++.|+++=|.|.. .+..+++.. .+|.+-
T Consensus 47 sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg-SY~~s~e~av~nA~rl~~e 125 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG-SYESSTDQAVESAVRMLKE 125 (332)
T ss_pred HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 4677788999999987643 11 11246899999999999999999999999963 255677664 455444
Q ss_pred CCEEEEeeC
Q psy9711 111 ENIRGVKDT 119 (198)
Q Consensus 111 p~i~giK~s 119 (198)
-...|||.+
T Consensus 126 aGa~aVKlE 134 (332)
T PLN02424 126 GGMDAVKLE 134 (332)
T ss_pred hCCcEEEEC
Confidence 689999999
No 105
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.55 E-value=0.18 Score=41.36 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCC------------------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYC------------------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~------------------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
|..+.++.+++. ++||+.|+|= ...+++++.++..+++||+++++-.+ + .
T Consensus 118 ~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----~---~---- 185 (264)
T PRK00311 118 EVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV----P---A---- 185 (264)
T ss_pred HHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C---H----
Confidence 555667766655 9999755432 12458899999999999999998644 2 2
Q ss_pred HHHHHHHccCCCCEEEE-eCCCCcccccCHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIY-NNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lY-n~P~~tg~~l~~~~l~~L 107 (198)
+-.+.|.+++++|+|=- --|...|..+=...+.-+
T Consensus 186 ~~~~~i~~~l~iP~igiGaG~~~dgqvlv~~D~lG~ 221 (264)
T PRK00311 186 ELAKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGL 221 (264)
T ss_pred HHHHHHHHhCCCCEEEeccCCCCCceeeeHHhhcCC
Confidence 24567888889999843 335555665554444444
No 106
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.55 E-value=1.3 Score=35.80 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH----HHHHHcC
Q psy9711 42 LTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT----LVKLAHH 110 (198)
Q Consensus 42 ~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~----l~~L~~~ 110 (198)
.|+.++++|+|++.+..-. +..|+ .+-+++..+.+.|++.++.+-++=|.|..+|. +++. ..++.+
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~--~~~~~~~~~~~l~~- 100 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYG--APTAAFELAKTFMR- 100 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCc--CHHHHHHHHHHHHH-
Confidence 3566777899999998532 11121 46899999999999999854455588866554 4333 445555
Q ss_pred CCEEEEeeCC
Q psy9711 111 ENIRGVKDTD 120 (198)
Q Consensus 111 p~i~giK~sd 120 (198)
-.+.|||.+|
T Consensus 101 aGa~gv~iED 110 (240)
T cd06556 101 AGAAGVKIEG 110 (240)
T ss_pred cCCcEEEEcC
Confidence 6899999993
No 107
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.49 E-value=1.9 Score=37.18 Aligned_cols=127 Identities=17% Similarity=0.141 Sum_probs=73.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC----CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCccccc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC----PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDI 99 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~----P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l 99 (198)
.++|.+.+ +..+..++++.+.++|+|.+.+.. ..|.....+.+.+.+. .+..++||+. |.-.
T Consensus 131 ~V~v~vr~---~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~----ik~~~ipVIa-------G~V~ 196 (368)
T PRK08649 131 GVIVAVSL---SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEF----IYELDVPVIV-------GGCV 196 (368)
T ss_pred eEEEEEec---CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHH----HHHCCCCEEE-------eCCC
Confidence 45555555 345678999999999999999953 2232211024444444 3445899876 3346
Q ss_pred CHHHHHHHHcCCCEEEEeeC---------------CHHHHHHHHhh----------cCCCCeEEEe-c---ChhhHHHHh
Q psy9711 100 SVDTLVKLAHHENIRGVKDT---------------DNIKLANMANQ----------TKDLNFSVFA-G---SAGYLLSGL 150 (198)
Q Consensus 100 ~~~~l~~L~~~p~i~giK~s---------------d~~~~~~~~~~----------~~~~~~~v~~-G---~d~~~~~~l 150 (198)
+++...++.+ -.+.+||.. ...++..+... ..+.++.|+. | ....+..++
T Consensus 197 t~e~A~~l~~-aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAl 275 (368)
T PRK08649 197 TYTTALHLMR-TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAI 275 (368)
T ss_pred CHHHHHHHHH-cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHH
Confidence 7777777775 344444444 12333222210 0112355553 2 224578889
Q ss_pred hcCCCeEEecccccc
Q psy9711 151 LVGCAGGINALSAVL 165 (198)
Q Consensus 151 ~~G~~G~is~~~n~~ 165 (198)
.+|+++++.|..-..
T Consensus 276 alGAd~Vm~Gs~fa~ 290 (368)
T PRK08649 276 ACGADAVMLGSPLAR 290 (368)
T ss_pred HcCCCeecccchhcc
Confidence 999999998876443
No 108
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.48 E-value=0.8 Score=37.29 Aligned_cols=85 Identities=12% Similarity=-0.050 Sum_probs=47.5
Q ss_pred HHHHHHhc--CCeEEEeCCCC--------c----HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 16 ISTLRQET--KKTIIAGTYCE--------S----TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 16 ~~~~~~~~--~~pvi~gv~~~--------~----~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
++.+.+.. .+.+...++.. + .+...+.++.|++.|.. +.+.+|...+.+ ++.+.+..+.+.+.
T Consensus 75 v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~--~~~~~~~~~~~~~~ 151 (259)
T cd07939 75 IEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDASRAD--PDFLIEFAEVAQEA 151 (259)
T ss_pred HHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCCCCC--HHHHHHHHHHHHHC
Confidence 34455544 56666666543 2 34445667777788863 556666666554 77777777777653
Q ss_pred CCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 82 SPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
+... ...+...|. +.|+.+.++
T Consensus 152 -G~~~--i~l~DT~G~-~~P~~v~~l 173 (259)
T cd07939 152 -GADR--LRFADTVGI-LDPFTTYEL 173 (259)
T ss_pred -CCCE--EEeCCCCCC-CCHHHHHHH
Confidence 3222 233444554 444444444
No 109
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.48 E-value=0.34 Score=40.36 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF 62 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~ 62 (198)
..-.++.-.++++.+.+..++||++=++. +..+..+.++.++++|+|++.+..-.+.
T Consensus 149 l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 149 VGQDPELVEEICRWVREAVKIPVIAKLTP-NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred hccCHHHHHHHHHHHHHhcCCCeEEECCC-CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 33456677778888877668999998875 5568899999999999999998876544
No 110
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=94.41 E-value=0.76 Score=37.44 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCCC--cccccCHHHHHHH---H-c
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTFV--TNIDISVDTLVKL---A-H 109 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~~--tg~~l~~~~l~~L---~-~ 109 (198)
-+..++.+.+.|++++.+....-. .+ +.+.++..++|.+. .++|+++--.+.. .+. ++.+.+.++ + +
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g~-~~--~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~-~~~~~~~~~~~~a~~ 167 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVGS-DT--EWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD-RDPELVAHAARLGAE 167 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecCC-ch--HHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc-ccHHHHHHHHHHHHH
Confidence 456688999999999999865322 22 45555666666654 5799988322210 122 455666553 3 2
Q ss_pred C-CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecCh--h------hHHHHhhcCCCeEEecc
Q psy9711 110 H-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA--G------YLLSGLLVGCAGGINAL 161 (198)
Q Consensus 110 ~-p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d--~------~~~~~l~~G~~G~is~~ 161 (198)
. ..++++... +...+.++.+ ..+-++....|.. + ++...+..|++|+..+.
T Consensus 168 ~GADyikt~~~~~~~~l~~~~~-~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~ 228 (258)
T TIGR01949 168 LGADIVKTPYTGDIDSFRDVVK-GCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGR 228 (258)
T ss_pred HCCCEEeccCCCCHHHHHHHHH-hCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhh
Confidence 2 345555444 7788877763 3334454444543 1 34455689999776554
No 111
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=94.37 E-value=0.24 Score=40.64 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 14 KIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
+.++.+++.+++||++ |+...+.++++++++.+.++||+++.+..-.|..++ +.+..+-++.+..
T Consensus 186 ~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~--p~~~~~~l~~~v~ 252 (267)
T PRK07226 186 ESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED--PEAITRAISAVVH 252 (267)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC--HHHHHHHHHHHHh
Confidence 4555555544777755 455447899999999999999999999998888776 8888887777664
No 112
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.36 E-value=1.2 Score=38.00 Aligned_cols=97 Identities=4% Similarity=0.024 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHhc----CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC-HHH-HHHH
Q psy9711 8 TEEEKLKIISTLRQET----KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMT-EDL-IYEH 74 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~----~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~-~~~-i~~y 74 (198)
|.+-|.+++..++++. +.||.+-++ +.+.+++++.++..++.|+|.+-+....+..+... ..+ ...+
T Consensus 187 slenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~ 266 (337)
T PRK13523 187 SPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPF 266 (337)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHH
Confidence 4677777776666665 456666444 34789999999999999999999987654322100 111 2234
Q ss_pred HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 75 ~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
-+.|-+.+++||+. .|.--+++...++.+-
T Consensus 267 ~~~ik~~~~ipVi~------~G~i~~~~~a~~~l~~ 296 (337)
T PRK13523 267 AEHIREHANIATGA------VGLITSGAQAEEILQN 296 (337)
T ss_pred HHHHHhhcCCcEEE------eCCCCCHHHHHHHHHc
Confidence 45566667888876 3445578888887753
No 113
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=94.33 E-value=0.75 Score=40.66 Aligned_cols=168 Identities=7% Similarity=-0.014 Sum_probs=95.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||......+++.+ +..+ .+.+++.++++.+++++.+++.|+.++|+. +....+ ..+..+
T Consensus 186 ~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~~~G~~~~mv~--~~~G~~-----~l~~l~ 258 (450)
T cd08212 186 SQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYLNVTAGTMEEMYKRAEFAKELGSPIIMHD--LLTGFT-----AIQSLA 258 (450)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeccccCCCHHHHHHHHHHHHHhCCCeEeee--cccccc-----hHHHHH
Confidence 344566788988777777666 3334 457887789999999999999999999997 222332 134444
Q ss_pred HHHccCCCCEEEEeCCCC--c---ccccCHHHHH---HHH--c---CCCEEEEeeC-CHHH---HHHHHhhc--------
Q psy9711 77 SVADNSPIPVIIYNNTFV--T---NIDISVDTLV---KLA--H---HENIRGVKDT-DNIK---LANMANQT-------- 131 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~--t---g~~l~~~~l~---~L~--~---~p~i~giK~s-d~~~---~~~~~~~~-------- 131 (198)
+.++..++||..+-.-.. + ..-++.-++. ||+ + .|++ +=|.. +... +.+.++..
T Consensus 259 ~~a~~~~l~IhaHrA~~ga~~r~~~~Gis~~vl~kl~RLaGaD~ih~~t~-~Gk~~~~~~~~~~~~~~~~~~~~~~d~~~ 337 (450)
T cd08212 259 KWCRDNGMLLHLHRAGHATYDRQKNHGIHFRVLAKWLRLSGVDHIHAGTV-VGKLEGDPLVTLGFYDLLRDDYIEKDRSR 337 (450)
T ss_pred HHhhhcCceEEeccccceecccCccCCcCHHHHHHHHHHcCCCccccCCC-cCCcCCCHHHHHHHHHHHhhhhccccccc
Confidence 444456888776643110 0 1134444554 554 3 2666 44665 4332 32222110
Q ss_pred ----------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHc
Q psy9711 132 ----------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKA 178 (198)
Q Consensus 132 ----------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~ 178 (198)
..+-|.+.+|.-. .+...+ ..|-|-++...+.++ | +.+++-|+++.+
T Consensus 338 ~~~~~q~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~ 406 (450)
T cd08212 338 GIFFTQDWASLPGVMPVASGGIHVGQMHQLIEIFGDDVVLQFGGGTIGHPWGIAAGATANRVALEAMVQ 406 (450)
T ss_pred ccccccccccCCCceEecCCCCCHHHHHHHHHhcCCceEEecCcceecCCCChhHHHHHHHHHHHHHHH
Confidence 1234777776432 233332 356554444444442 2 567777777777
No 114
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.19 E-value=0.49 Score=40.01 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=80.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhc-CCeEEEe--CCCCcHH-HHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHH
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQET-KKTIIAG--TYCESTR-ATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHF 75 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~g--v~~~~~~-~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~ 75 (198)
+|.....+++--.++++.+++++ ++||-+= +|....+ .+.+.++.+++.|++++.+-.-.-. ..+ ...-.++.
T Consensus 112 ~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~--~~ad~~~I 189 (323)
T COG0042 112 AGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYL--GPADWDYI 189 (323)
T ss_pred cchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCC--CccCHHHH
Confidence 46667778888899999999998 5998773 3443333 6889999999999999999864421 111 22345777
Q ss_pred HHHHccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 76 ISVADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 76 ~~i~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
.++.+.++ +||+. .|--.+++...+..+.-++-|+=..
T Consensus 190 ~~vk~~~~~ipvi~------NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 190 KELKEAVPSIPVIA------NGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred HHHHHhCCCCeEEe------CCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 78888887 89886 4555689999988877666666555
No 115
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=94.18 E-value=1.2 Score=37.88 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhc---CCeEEEe--CCC-------------CcHHHHHHHHHHHHh--cCCCEEEEcCCCCcCC-----
Q psy9711 10 EEKLKIISTLRQET---KKTIIAG--TYC-------------ESTRATIDLTQKAAK--AGANAALILCPYYFQK----- 64 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~g--v~~-------------~~~~~~i~~a~~a~~--~Gad~v~~~~P~y~~~----- 64 (198)
+++.+.++.+.+++ ++|+++- +.. ...+-.++.+|.+.+ +|+|-+=+-.|.-.+.
T Consensus 139 ~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~ 218 (340)
T PRK12858 139 DRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFD 218 (340)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccc
Confidence 45666788888888 8998874 111 234566777888884 9999888877743211
Q ss_pred ----CCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 65 ----KMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 65 ----~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
-.++++..++|+++.+++++|+++--
T Consensus 219 ~~~~~~~~~~~~~~f~~~~~a~~~P~vvls 248 (340)
T PRK12858 219 GFEEAYTQEEAFKLFREQSDATDLPFIFLS 248 (340)
T ss_pred cccccccHHHHHHHHHHHHhhCCCCEEEEC
Confidence 01489999999999999999999944
No 116
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=94.17 E-value=0.63 Score=40.72 Aligned_cols=174 Identities=11% Similarity=0.035 Sum_probs=97.1
Q ss_pred cCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
......+||......+++.+ +.. -.+.+++.++++.+++++.++++|+.++|+.+-.+. .+ .....++
T Consensus 174 q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G-~~-----~l~~l~~ 247 (414)
T cd08206 174 QPFMRFEDRILFVAEAMDKAEAETGEAKGHYLNITADTPEEMIKRAEFAKELGSVIVMVDGVTAG-WT-----AIQSARR 247 (414)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhCCcceEEeccCCCcHHHHHHHHHHHHHhCCcEEEEeeeccc-HH-----HHHHHHH
Confidence 35567788888777666665 333 455788767999999999999999999999754432 22 1222222
Q ss_pred HHccCCCCEEEEeCCCCcc-------cccCHHHHHH---HH--c---CCCEEEEeeC-CHH---HHHHHHhhc-------
Q psy9711 78 VADNSPIPVIIYNNTFVTN-------IDISVDTLVK---LA--H---HENIRGVKDT-DNI---KLANMANQT------- 131 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~---L~--~---~p~i~giK~s-d~~---~~~~~~~~~------- 131 (198)
-+...++||..+-. .+| ..++..++.+ |+ + .|++. =|.. +.. ++.+.++..
T Consensus 248 ~~~~~~l~ih~HrA--~~ga~~~~~~~Gis~~vl~kl~RLaGaD~ih~~t~~-Gk~~~~~~~~~~~~~~l~~~~~~~~~~ 324 (414)
T cd08206 248 WCPDNGLALHAHRA--GHAAFTRQKNHGISMRVLAKLARLIGVDHIHTGTVV-GKLEGDPSEVKGIADMLREDEVEGDLS 324 (414)
T ss_pred hccccCeEEEEccc--cceecccCCCCcCcHHHHHHHHHHcCCCccccCCCc-cCCCCCHHHHHHHHHHhhcccccCCcc
Confidence 22234566665533 222 1345555554 44 2 36664 4555 433 333332111
Q ss_pred ----------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC-HHHHHH
Q psy9711 132 ----------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK-WEEAMK 186 (198)
Q Consensus 132 ----------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd-~~~A~~ 186 (198)
..+-|.|.+|.-. .+...+ ..|-|-++...+.++ .+.+++-|+++.+|. .+++.+
T Consensus 325 ~~~~~q~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak 402 (414)
T cd08206 325 RIFFNQDWGGMKPVFPVASGGLHPGRMPALIEILGDDVILQFGGGTHGHPDGPAAGAKANRQALEAWVQGRILREYAK 402 (414)
T ss_pred ccccccccccCCCcEEecCCccChhHHHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHHHhCCChHHHhh
Confidence 1234677766433 232322 356554444444442 257788888888774 454444
No 117
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.16 E-value=0.24 Score=40.48 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEeCC------------------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711 10 EEKLKIISTLRQETKKTIIAGTY------------------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI 71 (198)
Q Consensus 10 ~Er~~l~~~~~~~~~~pvi~gv~------------------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i 71 (198)
+|..+.++.+++. ++||+.++| ....+++++.++.++++|||++.+-.+ + .
T Consensus 114 ~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----~---~--- 182 (254)
T cd06557 114 AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV----P---A--- 182 (254)
T ss_pred HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----C---H---
Confidence 3566667777655 888874332 112578899999999999999998644 1 2
Q ss_pred HHHHHHHHccCCCCEEEE-eCCCCcccccCHHHHHHH
Q psy9711 72 YEHFISVADNSPIPVIIY-NNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 72 ~~y~~~i~~~~~~pi~lY-n~P~~tg~~l~~~~l~~L 107 (198)
+-.+.|++++++|+|=- --|...|..+=...+.-+
T Consensus 183 -~~~~~i~~~v~iP~igiGaG~~~dgqvlv~~D~lG~ 218 (254)
T cd06557 183 -ELAKEITEALSIPTIGIGAGPDCDGQVLVWHDMLGL 218 (254)
T ss_pred -HHHHHHHHhCCCCEEEeccCCCCCceeehHHhhcCC
Confidence 34677888889999843 345545555544433333
No 118
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=94.06 E-value=1.5 Score=36.41 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=86.3
Q ss_pred CCeEEEeCCCCc---HHHHHHHHHHHHhcCCCEEEE--cCCCCcC-CC-CCHHHHHH-HHHHHHccCCCCEEEEeCCCCc
Q psy9711 24 KKTIIAGTYCES---TRATIDLTQKAAKAGANAALI--LCPYYFQ-KK-MTEDLIYE-HFISVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 24 ~~pvi~gv~~~~---~~~~i~~a~~a~~~Gad~v~~--~~P~y~~-~~-~~~~~i~~-y~~~i~~~~~~pi~lYn~P~~t 95 (198)
.+||++++...+ .+|-++.++..+ .|+|++=+ ..|.... .+ ...+++.. ..+.+.+.+++|+++-=.|..+
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~ 174 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFT 174 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSS
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEecCCCC
Confidence 589999999888 899999999888 88999866 3554321 10 11344444 3344445568999998777533
Q ss_pred ccccCHHHHHHHHc--CCCEE-----EEee------------------C-C------HHHHHHHHhhcCCCCeEEEec--
Q psy9711 96 NIDISVDTLVKLAH--HENIR-----GVKD------------------T-D------NIKLANMANQTKDLNFSVFAG-- 141 (198)
Q Consensus 96 g~~l~~~~l~~L~~--~p~i~-----giK~------------------s-d------~~~~~~~~~~~~~~~~~v~~G-- 141 (198)
.... .+...++.+ ...|+ +-.+ | . +..+.++. +..++++.|...
T Consensus 175 ~~~~-~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~-~~~~~~i~Iig~GG 252 (295)
T PF01180_consen 175 DIEP-FAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELR-KALGQDIPIIGVGG 252 (295)
T ss_dssp CHHH-HHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHH-HHTTTSSEEEEESS
T ss_pred chHH-HHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHH-hccccceEEEEeCC
Confidence 2111 233444432 22233 1111 1 0 01122222 344557877643
Q ss_pred Ch--hhHHHHhhcCCCeEEeccccc--chHHHHHHHHHHH
Q psy9711 142 SA--GYLLSGLLVGCAGGINALSAV--LGGPICELYDLAK 177 (198)
Q Consensus 142 ~d--~~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~~~~ 177 (198)
-. ......+.+|++.+..+++.+ -|..+.+|.+.++
T Consensus 253 I~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L~ 292 (295)
T PF01180_consen 253 IHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINRELE 292 (295)
T ss_dssp --SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHHH
Confidence 22 246788999999998887754 3777777766543
No 119
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=94.06 E-value=0.32 Score=39.64 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 14 KIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
+.++.+++..++||++ |+...+.+++++.++.+.++|++++.+..-.|..++ +.+..+-++.+..
T Consensus 182 ~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d--p~~~~~~l~~~i~ 248 (258)
T TIGR01949 182 DSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD--PVGITKAVCKIVH 248 (258)
T ss_pred HHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC--HHHHHHHHHHHHh
Confidence 3455555544788866 455446899999999999999999999988887776 8877777776653
No 120
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=94.05 E-value=0.97 Score=37.44 Aligned_cols=79 Identities=10% Similarity=-0.028 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeCCC------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGTYC------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
.|.+|-.+.++.+++.+ +..|.+++.+ .+.+..+++++.+.++|++.+.+.--. ...+ |.++.++++.
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~~--P~~v~~l~~~ 184 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTL-GILS--PFETYTYISD 184 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCC-CCCC--HHHHHHHHHH
Confidence 45555555555555544 4445444432 245666666666666666655543322 2222 6666666666
Q ss_pred HHccCC-CCEEE
Q psy9711 78 VADNSP-IPVII 88 (198)
Q Consensus 78 i~~~~~-~pi~l 88 (198)
+-+..+ +|+-+
T Consensus 185 l~~~~~~~~i~~ 196 (280)
T cd07945 185 MVKRYPNLHFDF 196 (280)
T ss_pred HHhhCCCCeEEE
Confidence 665543 55544
No 121
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=94.04 E-value=1.2 Score=36.49 Aligned_cols=81 Identities=9% Similarity=0.002 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..|.+|-.+.+..+++.+ +..|.+++ ...+.+...++++.+.++|++.+.+.-- ....+ |+++.++++.+-
T Consensus 104 ~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~--P~~v~~~~~~~~ 180 (262)
T cd07948 104 GKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADT-VGIAT--PRQVYELVRTLR 180 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCc-CCCCC--HHHHHHHHHHHH
Confidence 356667566555555555 56665553 3445788899999999999997766543 34444 999999999998
Q ss_pred ccCCCCEEEE
Q psy9711 80 DNSPIPVIIY 89 (198)
Q Consensus 80 ~~~~~pi~lY 89 (198)
+..++|+-++
T Consensus 181 ~~~~~~i~~H 190 (262)
T cd07948 181 GVVSCDIEFH 190 (262)
T ss_pred HhcCCeEEEE
Confidence 8888777554
No 122
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.02 E-value=0.19 Score=40.39 Aligned_cols=134 Identities=15% Similarity=0.163 Sum_probs=79.6
Q ss_pred CeEEEeC--CCCcHHHH-----HHHHHHHHhcCCCEEEEcCCCC-cCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711 25 KTIIAGT--YCESTRAT-----IDLTQKAAKAGANAALILCPYY-FQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF 93 (198)
Q Consensus 25 ~pvi~gv--~~~~~~~~-----i~~a~~a~~~Gad~v~~~~P~y-~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~ 93 (198)
++++++. +...++.- +..++.|.+.|||++-++.++- .... ..+...+-.+++.+.+ ++|+++--.|
T Consensus 57 ~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE~~l- 134 (236)
T PF01791_consen 57 VGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILEPYL- 134 (236)
T ss_dssp EEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEEECE-
T ss_pred cceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEEEec-
Confidence 5677776 34455666 7899999999999999987762 2221 2666666666666655 7999987433
Q ss_pred Cccccc----CHHHHH---HHHcCCCEEEEeeC-C---------HHHHHHHHhhcCCC-C--eEEEecC------hh--h
Q psy9711 94 VTNIDI----SVDTLV---KLAHHENIRGVKDT-D---------NIKLANMANQTKDL-N--FSVFAGS------AG--Y 145 (198)
Q Consensus 94 ~tg~~l----~~~~l~---~L~~~p~i~giK~s-d---------~~~~~~~~~~~~~~-~--~~v~~G~------d~--~ 145 (198)
++..+ .++.+. |++..-+.--+|-+ . ...+.++......| + +.+-.|. +. .
T Consensus 135 -~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~ 213 (236)
T PF01791_consen 135 -RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLED 213 (236)
T ss_dssp -CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHH
T ss_pred -CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHH
Confidence 33332 344444 44433567778876 3 34445555322112 2 5555565 22 2
Q ss_pred HHHHhhcCC--CeEEecc
Q psy9711 146 LLSGLLVGC--AGGINAL 161 (198)
Q Consensus 146 ~~~~l~~G~--~G~is~~ 161 (198)
....+.+|+ .|+.+|-
T Consensus 214 a~~~i~aGa~~~G~~~Gr 231 (236)
T PF01791_consen 214 ALEFIEAGADRIGTSSGR 231 (236)
T ss_dssp HHHHHHTTHSEEEEEEHH
T ss_pred HHHHHHcCChhHHHHHHH
Confidence 334458999 8888774
No 123
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=94.02 E-value=2.8 Score=34.11 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++.. ++++.+-. ++-+.+++++.++..++.|++.+ --|.. .+ -.+.++.+.+.+++||
T Consensus 113 ~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EeP~~------~~-d~~~~~~l~~~~~ipi 183 (265)
T cd03315 113 ARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYV--EQPLP------AD-DLEGRAALARATDTPI 183 (265)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEE--ECCCC------cc-cHHHHHHHHhhCCCCE
Confidence 34456677777665 56666654 33467788888888877766544 23321 11 1245666777777887
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
..= ....++..+.++.+ ...++.+|-+
T Consensus 184 a~d------E~~~~~~~~~~~i~~~~~d~v~~k~~ 212 (265)
T cd03315 184 MAD------ESAFTPHDAFRELALGAADAVNIKTA 212 (265)
T ss_pred EEC------CCCCCHHHHHHHHHhCCCCEEEEecc
Confidence 762 22345666766653 4577777776
No 124
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=94.01 E-value=3.3 Score=34.91 Aligned_cols=126 Identities=17% Similarity=0.094 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH----HHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF----ISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~----~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
.++.++...++|+|++++.-|.....+ ++...+|. ++|.+.. +.|+ +|..- |. ...+..+.+
T Consensus 179 ~~~~~~~~ieaGad~i~i~d~~~~~ls--p~~f~ef~~P~~k~i~~~i~~~~~~~~i-lh~cg---~~---~~~~~~~~~ 249 (335)
T cd00717 179 TIEYLKAQIEAGAQAVQIFDSWAGALS--PEDFEEFVLPYLKRIIEEVKKRLPGVPV-ILFAK---GA---GGLLEDLAQ 249 (335)
T ss_pred HHHHHHHHHHhCCCEEEEeCcccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEcC---CC---HHHHHHHHh
Confidence 356667667899999998877443333 77776554 6777765 2344 44321 22 256777887
Q ss_pred CC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecCh--------h-h---HHHHhhcCC--CeEEecccccch-----HH
Q psy9711 110 HE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSA--------G-Y---LLSGLLVGC--AGGINALSAVLG-----GP 168 (198)
Q Consensus 110 ~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d--------~-~---~~~~l~~G~--~G~is~~~n~~P-----~~ 168 (198)
.+ ++.++=.. |+....+.+ +++..+..+.+ + . ....+..++ .|+|.+.++-+| +-
T Consensus 250 ~~~~~~s~d~~~dl~e~k~~~----g~~~~i~Gni~p~~l~~~~e~i~~~v~~~l~~~~~~~gfIl~~gc~i~~~tp~eN 325 (335)
T cd00717 250 LGADVVGLDWRVDLDEARKRL----GPKVALQGNLDPALLYAPKEAIEKEVKRILKAFGGAPGHIFNLGHGILPDTPPEN 325 (335)
T ss_pred cCCCEEEeCCCCCHHHHHHHh----CCCeEEEeCCChhhhcCCHHHHHHHHHHHHHHhCcCCCceeecCCcCCCCcCHHH
Confidence 64 66666555 777665544 23333333222 1 1 112233222 477877776443 56
Q ss_pred HHHHHHHHH
Q psy9711 169 ICELYDLAK 177 (198)
Q Consensus 169 ~~~l~~~~~ 177 (198)
+..+.++.+
T Consensus 326 i~a~v~a~~ 334 (335)
T cd00717 326 VKALVEAVH 334 (335)
T ss_pred HHHHHHHHh
Confidence 666666554
No 125
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=93.99 E-value=2.7 Score=33.87 Aligned_cols=154 Identities=13% Similarity=0.016 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCC--c-----C-CCCCHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYY--F-----Q-KKMTEDLIYEH 74 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y--~-----~-~~~~~~~i~~y 74 (198)
++.|+-.+.++.-.... +.|+++.+++.+.++.++.++..++ ++|++=+- .|.- . . .-.+++-+.+.
T Consensus 48 ~~~e~~~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~i 126 (231)
T TIGR00736 48 FNLEEFNSYIIEQIKKAESRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEF 126 (231)
T ss_pred cCcccHHHHHHHHHHHHhhcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHH
Confidence 44334444444433333 7899999999999999999999877 79988875 3331 0 0 00248888888
Q ss_pred HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------CHHHHHHHHhhcCCCCeEEE-ecCh-
Q psy9711 75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------DNIKLANMANQTKDLNFSVF-AGSA- 143 (198)
Q Consensus 75 ~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------d~~~~~~~~~~~~~~~~~v~-~G~d- 143 (198)
.+.+. .+++||.+==-|..+. .....+.+.++--++.++... ++..+.++. +.. +++.|+ +|.=
T Consensus 127 v~av~-~~~~PVsvKiR~~~~~--~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~-~~~-~~ipIIgNGgI~ 201 (231)
T TIGR00736 127 LTKMK-ELNKPIFVKIRGNCIP--LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILS-EEF-NDKIIIGNNSID 201 (231)
T ss_pred HHHHH-cCCCcEEEEeCCCCCc--chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHH-Hhc-CCCcEEEECCcC
Confidence 88888 4589998876654321 223234443322222222222 234444444 222 223333 3321
Q ss_pred --hhHHHHhhcCCCeEEecccccch
Q psy9711 144 --GYLLSGLLVGCAGGINALSAVLG 166 (198)
Q Consensus 144 --~~~~~~l~~G~~G~is~~~n~~P 166 (198)
+.....+..|++|++.+.+.+.+
T Consensus 202 s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 202 DIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred CHHHHHHHHHhCCCeEEEcHhhccC
Confidence 23456677899999988876654
No 126
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=93.98 E-value=0.59 Score=40.80 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=97.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
+......+||.+....+++.+ +.. -.+.+++. +++.+++++.+++.|++++|+.+-.+. .+ -.+
T Consensus 184 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~~~~~~G~~~~mv~~~~~G-~~--------~l~ 253 (406)
T cd08207 184 NPPYSPLDERVRAVMRVINDHAQRTGRKVMYAFNITDD-IDEMRRNHDLVVEAGGTCVMVSLNSVG-LS--------GLA 253 (406)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEecCCC-HHHHHHHHHHHHHhCCCeEEEeccccc-hH--------HHH
Confidence 445667889987766666665 333 45678775 999999999999999999999755432 22 144
Q ss_pred HHHccCCCCEEEEeCCCC--c---ccccCHHHHH---HHH--c---CCCEEEEeeC--C--HHHHHHHHhhc----CCCC
Q psy9711 77 SVADNSPIPVIIYNNTFV--T---NIDISVDTLV---KLA--H---HENIRGVKDT--D--NIKLANMANQT----KDLN 135 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~--t---g~~l~~~~l~---~L~--~---~p~i~giK~s--d--~~~~~~~~~~~----~~~~ 135 (198)
.+++..++||..+-.-.. + ...++..++. ||+ + .|++ +=|.. + ..++.+..++. ..+-
T Consensus 254 ~l~~~~~l~IhaHra~~ga~~r~p~~Gis~~vl~kl~RLaGaD~~~~~~~-~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~ 332 (406)
T cd08207 254 ALRRHSQLPIHGHRNGWGMLTRSPALGISFQAYQKLWRLAGVDHLHVNGL-ASKFWESDDSVIESARACLTPLGGPDDAA 332 (406)
T ss_pred HHHhcCCceEEECCCcceecccCCCCCCcHHHHHHHHHHcCCCccccCCC-cCCcCCCcHHHHHHHHHHhCchhccCCCe
Confidence 445556788875533110 0 1124444444 555 3 3666 44543 2 22322222221 2345
Q ss_pred eEEEecChh--hHHHHh-hcCC-CeEEecccccc--h-------HHHHHHHHHHHcCCH-HHHH
Q psy9711 136 FSVFAGSAG--YLLSGL-LVGC-AGGINALSAVL--G-------GPICELYDLAKAGKW-EEAM 185 (198)
Q Consensus 136 ~~v~~G~d~--~~~~~l-~~G~-~G~is~~~n~~--P-------~~~~~l~~~~~~gd~-~~A~ 185 (198)
|.+.+|.-. .+...+ ..|- |=++...+.++ | +.+++-|+++.+|.. +++.
T Consensus 333 ~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~rqA~ea~~~G~~l~e~A 396 (406)
T cd08207 333 MPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSLRQAWEAAVAGVPLEEYA 396 (406)
T ss_pred eEeccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCCcHHHHH
Confidence 667766433 233332 4563 55544333332 2 577888888888853 4433
No 127
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=93.85 E-value=0.95 Score=39.60 Aligned_cols=168 Identities=16% Similarity=0.117 Sum_probs=96.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||......+++.+ + +--.+.+++. +++.+++++.++++|++++|+.+-.+ ..+ ..+..+
T Consensus 172 ~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~~-~~em~~ra~~a~e~G~~~~mv~~~~~-G~~-----~l~~l~ 244 (412)
T cd08213 172 SQPFNRFEERAKESLKARDKAEAETGERKAYLANITAP-VREMERRAELVADLGGKYVMIDVVVA-GWS-----ALQYLR 244 (412)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEecCC-HHHHHHHHHHHHHhCCCeEEeecccc-ChH-----HHHHHH
Confidence 345667889988777776665 3 3345678765 99999999999999999999864433 222 133333
Q ss_pred HHHccCCCCEEEEeCCCCcc-------cccCHHHHHHH---H--c---CCCEEEEeeC-CH---HHHHHHHhhc------
Q psy9711 77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLVKL---A--H---HENIRGVKDT-DN---IKLANMANQT------ 131 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L---~--~---~p~i~giK~s-d~---~~~~~~~~~~------ 131 (198)
+-+...++||..+-. .+| .-++..++.+| + + .|++ +=|.. +. .++.+.++..
T Consensus 245 ~~~~~~~l~ihaHra--~~ga~~r~~~~Gis~~~l~kl~RLaGaD~ih~~t~-~Gk~~~~~~~~~~~~~~l~~~~~~~~~ 321 (412)
T cd08213 245 DLAEDYGLAIHAHRA--MHAAFTRNPRHGISMLVLAKLYRLIGVDQLHIGTA-VGKMEGDKEEVLRIADILREQKYKPDE 321 (412)
T ss_pred HhccccCeEEEECCC--cceecccCCcCcCcHHHHHHHHHHcCCCccccCCc-cCCcCCCHHHHHHHHHHHHhccccccc
Confidence 333345677766532 221 13444555554 4 2 2666 44555 33 3343333211
Q ss_pred -----------CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC
Q psy9711 132 -----------KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK 180 (198)
Q Consensus 132 -----------~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd 180 (198)
..+-|.|.+|.-+ .+...+ ..|-|-++...+.++ .+.+++-|+++.+|.
T Consensus 322 ~~~~~~q~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~ 393 (412)
T cd08213 322 EDFHLAQDWGGIKPVFPVASGGLHPGLVPDVIDILGKDIVIQVGGGVHGHPDGTRAGAKAVRQAIEAALEGI 393 (412)
T ss_pred hhccccCccccCCCceEecCCCCChhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCC
Confidence 1334777766443 232222 356554443333332 257788888888874
No 128
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.84 E-value=3.4 Score=35.40 Aligned_cols=188 Identities=13% Similarity=0.101 Sum_probs=108.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEE-Ee--CCC------CcHHHH------------------HHHHHHHHhcCCCEE
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTII-AG--TYC------ESTRAT------------------IDLTQKAAKAGANAA 54 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi-~g--v~~------~~~~~~------------------i~~a~~a~~~Gad~v 54 (198)
.+...+|.+|+.++++...+. +++.| +| ++. ...++. .+-++.|.++|++.+
T Consensus 60 ~~g~~~s~e~Ki~ia~~L~~~-GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 60 NEKNIVPTSVKVELIQRLVSS-GLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEE
Confidence 356789999999999998766 55543 22 110 011222 333456778899988
Q ss_pred EEcCCCC---cC--CCCCHHHHHHHHHHHHccC---CCCEEEEe-----CCCCcccccCHHHHHHHH----cC-CCEEEE
Q psy9711 55 LILCPYY---FQ--KKMTEDLIYEHFISVADNS---PIPVIIYN-----NTFVTNIDISVDTLVKLA----HH-ENIRGV 116 (198)
Q Consensus 55 ~~~~P~y---~~--~~~~~~~i~~y~~~i~~~~---~~pi~lYn-----~P~~tg~~l~~~~l~~L~----~~-p~i~gi 116 (198)
.+..|.- .+ ...|.++..+-+.++.+.. ++.+..|- .|..+ ..+++.+.+++ +. ...+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~l~~~~~~~~~~Gad~I~l 216 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSKVAYVAKELYDMGCYEISL 216 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 8875552 21 2245888888777766644 57775333 44322 35677666655 33 478999
Q ss_pred eeC----CHHHHHHHHhh---cCCC-CeEEEecChh------hHHHHhhcCCC---eEEec----------ccccchHHH
Q psy9711 117 KDT----DNIKLANMANQ---TKDL-NFSVFAGSAG------YLLSGLLVGCA---GGINA----------LSAVLGGPI 169 (198)
Q Consensus 117 K~s----d~~~~~~~~~~---~~~~-~~~v~~G~d~------~~~~~l~~G~~---G~is~----------~~n~~P~~~ 169 (198)
+|+ ++.++.++++. ..+. .+.+ -+.+. ..+.++..|++ +.+.| .+|..-|.+
T Consensus 217 ~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~-H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~l 295 (347)
T PLN02746 217 GDTIGVGTPGTVVPMLEAVMAVVPVDKLAV-HFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDV 295 (347)
T ss_pred cCCcCCcCHHHHHHHHHHHHHhCCCCeEEE-EECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHH
Confidence 999 77766655532 2222 3443 33332 34566788864 44443 445555666
Q ss_pred HHHHHHH--HcC-CHHHHHHHHHHhhc
Q psy9711 170 CELYDLA--KAG-KWEEAMKLQHRLVK 193 (198)
Q Consensus 170 ~~l~~~~--~~g-d~~~A~~l~~~~~~ 193 (198)
+.+.+.. ..| |+++..++.+.+..
T Consensus 296 v~~L~~~G~~tgiDl~~L~~~s~~v~~ 322 (347)
T PLN02746 296 VYMLNGLGVSTNVDLGKLMAAGDFISK 322 (347)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 6666654 112 55666555555443
No 129
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.81 E-value=1.1 Score=38.64 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..|.+|-.+.+..+++.+ +..|.++. +..+.+..++.++.+.++|++.+.+.--. ... +|+++.+.++.+.
T Consensus 108 ~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~--~P~~v~~lv~~l~ 184 (378)
T PRK11858 108 KKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-GIL--DPFTMYELVKELV 184 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCC--CHHHHHHHHHHHH
Confidence 456677777666666666 66666553 44668999999999999999987776444 333 4999999999999
Q ss_pred ccCCCCEEEE
Q psy9711 80 DNSPIPVIIY 89 (198)
Q Consensus 80 ~~~~~pi~lY 89 (198)
+..++|+-+|
T Consensus 185 ~~~~~~l~~H 194 (378)
T PRK11858 185 EAVDIPIEVH 194 (378)
T ss_pred HhcCCeEEEE
Confidence 8888888776
No 130
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=93.72 E-value=4.3 Score=35.32 Aligned_cols=165 Identities=18% Similarity=0.136 Sum_probs=96.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||......+++.+ +.. -.+.+++ ++++.+++++.+++.|++++|+.+-.+ ..+ -++
T Consensus 165 ~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~-G~~--------~l~ 234 (391)
T cd08209 165 DNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNLTG-PVFTLKEKARRLVEAGANALLFNVFAY-GLD--------VLE 234 (391)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEecccc-chH--------HHH
Confidence 345567789988777777665 333 4567876 589999999999999999999975433 222 255
Q ss_pred HHHc--cCCCCEEEEeCCCCcc-------cccCH----HHHHHHH--c---CCCEEEEeeC-CHHH---HHHHHhhc--C
Q psy9711 77 SVAD--NSPIPVIIYNNTFVTN-------IDISV----DTLVKLA--H---HENIRGVKDT-DNIK---LANMANQT--K 132 (198)
Q Consensus 77 ~i~~--~~~~pi~lYn~P~~tg-------~~l~~----~~l~~L~--~---~p~i~giK~s-d~~~---~~~~~~~~--~ 132 (198)
.+++ ..++||..|-. .+| .-++. ..+.||+ + .|++ +=|.+ +... +.+.+++. .
T Consensus 235 ~l~~~~~~~lpIhaHra--~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~~~~~~~~~~~ 311 (391)
T cd08209 235 ALASDPEINVPIFAHPA--FAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSP-YGSVALSKEEALAIAEALRRGGAF 311 (391)
T ss_pred HHHhcCcCCcEEEecCC--cccccccCCCCCCcHHHHHHHHHHHcCCCccccCCc-cCCcCCCHHHHHHHHHHHhCcCCC
Confidence 5555 45677765532 222 13444 4445666 3 2666 44555 4333 33333211 1
Q ss_pred CCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711 133 DLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK 180 (198)
Q Consensus 133 ~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd 180 (198)
.+-|.+.+|.-. .+...+ ..|-|=++...+.++ | +.+++-|+++.+|.
T Consensus 312 k~~~Pv~sgG~~~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~ 371 (391)
T cd08209 312 KGVFPVPSAGIHPGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAGVRAFREAIDAVLAGE 371 (391)
T ss_pred CCceEecCCCCChhHHHHHHHHhCCceEEecCcceecCCCCchhHHHHHHHHHHHHhcCC
Confidence 345777776432 233333 356554444333332 2 57788888888885
No 131
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=93.70 E-value=2.7 Score=35.74 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhc-CCeEEEeCCCC-------cHHHHHHHHHHHHhcCCCEEEE--cCCCCcC--CCCCHHHHHHHHHHHH
Q psy9711 12 KLKIISTLRQET-KKTIIAGTYCE-------STRATIDLTQKAAKAGANAALI--LCPYYFQ--KKMTEDLIYEHFISVA 79 (198)
Q Consensus 12 r~~l~~~~~~~~-~~pvi~gv~~~-------~~~~~i~~a~~a~~~Gad~v~~--~~P~y~~--~~~~~~~i~~y~~~i~ 79 (198)
-.++++...+.- +.||++.++.+ +.+|-.+.++.+.+ .||++-+ +.|..-. ...+++.+.+..+.|-
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~ 199 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVK 199 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 334444444433 78888887665 45777777777766 4999887 5665421 1124677777777777
Q ss_pred ccCC-------CCEEEEeCCC
Q psy9711 80 DNSP-------IPVIIYNNTF 93 (198)
Q Consensus 80 ~~~~-------~pi~lYn~P~ 93 (198)
+.++ +||++==.|.
T Consensus 200 ~~~~~~~~~~~~Pv~vKLsP~ 220 (335)
T TIGR01036 200 QEQDGLRRVHRVPVLVKIAPD 220 (335)
T ss_pred HHHHhhhhccCCceEEEeCCC
Confidence 6665 9999866664
No 132
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=93.69 E-value=1.2 Score=36.72 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEE
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVII 88 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~l 88 (198)
.+..+++++.+.++|++.+.+.-. ....+ |+++.++++.+.+..+ +|+-+
T Consensus 150 ~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~--P~~v~~lv~~l~~~~~~~~l~~ 200 (273)
T cd07941 150 PEYALATLKAAAEAGADWLVLCDT-NGGTL--PHEIAEIVKEVRERLPGVPLGI 200 (273)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecC-CCCCC--HHHHHHHHHHHHHhCCCCeeEE
Confidence 444556666666666665443322 22222 6666666666655554 55544
No 133
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=93.59 E-value=1.4 Score=36.13 Aligned_cols=148 Identities=9% Similarity=0.044 Sum_probs=76.7
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 29 AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 29 ~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
+.+.....+++.+.++.+++.|.. +.+.+-.-+..+ ++.+.+..+.+.+. +...+ ..+...| .++|+.+.++.
T Consensus 101 i~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~~a~~~~--~~~~~~~~~~~~~~-g~~~i--~l~DT~G-~~~P~~v~~lv 173 (266)
T cd07944 101 VAFHKHEFDEALPLIKAIKEKGYE-VFFNLMAISGYS--DEELLELLELVNEI-KPDVF--YIVDSFG-SMYPEDIKRII 173 (266)
T ss_pred EecccccHHHHHHHHHHHHHCCCe-EEEEEEeecCCC--HHHHHHHHHHHHhC-CCCEE--EEecCCC-CCCHHHHHHHH
Confidence 355666788999999999999975 444333333444 88888888888753 43333 3333455 45666555544
Q ss_pred -c----CC--CEEEEeeC-CHHH-HHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeEEecccccchHHHHHHHHHH-Hc
Q psy9711 109 -H----HE--NIRGVKDT-DNIK-LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLA-KA 178 (198)
Q Consensus 109 -~----~p--~i~giK~s-d~~~-~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~~~-~~ 178 (198)
. .+ --+|+--- |... +.+.+.. ...+..++.+. ..|.-+ +.+|..-|.++..++.. ..
T Consensus 174 ~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA-~~aGa~~vd~s--------~~G~G~---~aGN~~~E~~v~~l~~~~~~ 241 (266)
T cd07944 174 SLLRSNLDKDIKLGFHAHNNLQLALANTLEA-IELGVEIIDAT--------VYGMGR---GAGNLPTELLLDYLNNKFGK 241 (266)
T ss_pred HHHHHhcCCCceEEEEeCCCccHHHHHHHHH-HHcCCCEEEEe--------cccCCC---CcCcHHHHHHHHHHHHhhcc
Confidence 2 33 33455444 4321 2222211 11122222221 111111 35566667766655543 22
Q ss_pred C-CHHHHHHHH-HHhhchh
Q psy9711 179 G-KWEEAMKLQ-HRLVKPD 195 (198)
Q Consensus 179 g-d~~~A~~l~-~~~~~l~ 195 (198)
| |.+...++- +.+.|++
T Consensus 242 ~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 242 KYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 2 566666655 5555554
No 134
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=93.56 E-value=5 Score=39.96 Aligned_cols=173 Identities=11% Similarity=0.019 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHh----c-CCeEEEeCCCCc------HHHHH-HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQE----T-KKTIIAGTYCES------TRATI-DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 8 t~~Er~~l~~~~~~~----~-~~pvi~gv~~~~------~~~~i-~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
+..|-+..+..+.+. . ++||++.++-.. .-+.+ .........|++++-+-.- .. ++++..+.
T Consensus 188 d~~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~~~~~avGlNCs----~G--P~~m~~~l 261 (1229)
T PRK09490 188 DTLNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRHAKPLSIGLNCA----LG--ADELRPYV 261 (1229)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhcCCCCEEEEcCC----Cc--HHHHHHHH
Confidence 456667777666554 2 789988654311 11122 2223334678887665421 12 89999999
Q ss_pred HHHHccCCCCEEEEeCCCC----cccccCHHHHHHHH----cCC--CEEEEeeC-CHHHHHHHHhhc--CCCC-------
Q psy9711 76 ISVADNSPIPVIIYNNTFV----TNIDISVDTLVKLA----HHE--NIRGVKDT-DNIKLANMANQT--KDLN------- 135 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn~P~~----tg~~l~~~~l~~L~----~~p--~i~giK~s-d~~~~~~~~~~~--~~~~------- 135 (198)
+.+++.++.|+++|-|-+. ..++.+|+.+.+.. +.. ||+|=-.. ++.+++.+.+.. ..++
T Consensus 262 ~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~~~~~ 341 (1229)
T PRK09490 262 EELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPV 341 (1229)
T ss_pred HHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCCCcCc
Confidence 9999989999999987432 35678888776555 334 89999888 888887665321 1121
Q ss_pred eEEEecChhhHHHHhhcCCC-eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 136 FSVFAGSAGYLLSGLLVGCA-GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 136 ~~v~~G~d~~~~~~l~~G~~-G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
..+.+|..... .+-+ .++...--+.|--..++.++++++|++.|.+.-.+.
T Consensus 342 ~~~~S~~~~~~-----~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~q 393 (1229)
T PRK09490 342 ACRLSGLEPLN-----IDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQ 393 (1229)
T ss_pred ceeeecceEEe-----ecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHH
Confidence 12344443322 1211 111111122333347888999999999988765443
No 135
>PRK08227 autoinducer 2 aldolase; Validated
Probab=93.54 E-value=0.51 Score=38.78 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
+-++.+++.+++||++ |=...+.++.+++++.+.+.|+.++.+---.|..++ +..+.+-.+.|.
T Consensus 182 ~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~--p~~~~~al~~IV 246 (264)
T PRK08227 182 EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH--PVAMIKAVHAVV 246 (264)
T ss_pred HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCC--HHHHHHHHHHHH
Confidence 3455566655888754 555557889999999999999999999999898877 888888888776
No 136
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=93.54 E-value=1.5 Score=36.56 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=60.3
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCcHHHH-HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQET-KKTIIAGTYCESTRAT-IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~-i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
++.+.+.+.- |.--++.+--.+.+.+ .+.-|.+.+.|..++.+.|+.-.... +++.+.. .-+.|+..++||++|.-
T Consensus 88 ~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~-~~~~~~p-i~~~a~~~gvpv~ihtG 165 (293)
T COG2159 88 DLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYP-DDPRLYP-IYEAAEELGVPVVIHTG 165 (293)
T ss_pred HHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCC-CChHHHH-HHHHHHHcCCCEEEEeC
Confidence 4555555444 4444444443333434 55556666789999999988865433 1444343 44455678999999876
Q ss_pred CCCcccc-----cCHHHHHHHH-cCCCEE
Q psy9711 92 TFVTNID-----ISVDTLVKLA-HHENIR 114 (198)
Q Consensus 92 P~~tg~~-----l~~~~l~~L~-~~p~i~ 114 (198)
+...+.. ..+-.+..++ ++|++.
T Consensus 166 ~~~~~~~~~~~~~~p~~~~~va~~fP~l~ 194 (293)
T COG2159 166 AGPGGAGLEKGHSDPLYLDDVARKFPELK 194 (293)
T ss_pred CCCCCcccccCCCCchHHHHHHHHCCCCc
Confidence 5444332 3345778888 688743
No 137
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.54 E-value=1.5 Score=37.35 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHhcC-----CeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711 8 TEEEKLKIISTLRQETK-----KTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYY 61 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~-----~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y 61 (198)
..+.-.++++.+++.++ +||++=++...+ ++..+.++.++++|+|++.+.....
T Consensus 190 ~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~ 249 (344)
T PRK05286 190 YGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTL 249 (344)
T ss_pred CHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcc
Confidence 34555678888888774 999998885433 4789999999999999999997653
No 138
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.50 E-value=1.6 Score=37.32 Aligned_cols=81 Identities=7% Similarity=-0.039 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE 73 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~ 73 (198)
..|.+|-.+.+..+++.+ +..|.+.+ +..+.+..+++++.+.++|+|.+.+.-.. ...+ |.++.+
T Consensus 154 ~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~-G~a~--P~~v~~ 230 (347)
T PLN02746 154 NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTI-GVGT--PGTVVP 230 (347)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCc-CCcC--HHHHHH
Confidence 467777777666666666 56664222 34467889999999999999987776544 3333 999999
Q ss_pred HHHHHHccCCC-CEEEE
Q psy9711 74 HFISVADNSPI-PVIIY 89 (198)
Q Consensus 74 y~~~i~~~~~~-pi~lY 89 (198)
+++.+.+..+. ||-++
T Consensus 231 lv~~l~~~~~~~~i~~H 247 (347)
T PLN02746 231 MLEAVMAVVPVDKLAVH 247 (347)
T ss_pred HHHHHHHhCCCCeEEEE
Confidence 99999888774 55554
No 139
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=93.50 E-value=0.79 Score=38.90 Aligned_cols=113 Identities=13% Similarity=0.154 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHhcCCeEEE----eCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCC-----CcCCC--CCHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQETKKTIIA----GTYC-ESTRATIDLTQKAAKAGANAALILCPY-----YFQKK--MTEDLIYEHF 75 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~----gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~-----y~~~~--~~~~~i~~y~ 75 (198)
.++.-.++++.+.+.+.+||.+ |+.+ .+..++++.++.++++|+|++.+.... |.... ..+.--.+++
T Consensus 117 ~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i 196 (333)
T PRK11815 117 EPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRV 196 (333)
T ss_pred CHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHH
Confidence 3444556777776655667765 5443 335788999999999999999987432 11000 0011124567
Q ss_pred HHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711 76 ISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA 128 (198)
Q Consensus 76 ~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~ 128 (198)
+.+.+.+ ++||+. .|--.+++.+.++.+ ++.|+=.. |+..+.++.
T Consensus 197 ~~v~~~~~~iPVI~------nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~ 247 (333)
T PRK11815 197 YRLKRDFPHLTIEI------NGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVD 247 (333)
T ss_pred HHHHHhCCCCeEEE------ECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHH
Confidence 7788775 799754 344568888888775 24555444 665555543
No 140
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=93.49 E-value=1 Score=37.33 Aligned_cols=107 Identities=15% Similarity=0.145 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCeEEEeCCCC-----------cHHHHHHHHHHHHh-cCCCEEEEc-CC---CCcC-C
Q psy9711 5 FKSTEEEKLKIISTLRQET---KKTIIAGTYCE-----------STRATIDLTQKAAK-AGANAALIL-CP---YYFQ-K 64 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~-----------~~~~~i~~a~~a~~-~Gad~v~~~-~P---~y~~-~ 64 (198)
..|+.+|..+..+.+++.+ ++.|=.=+|.. .+-...+.++.+.+ .|+|.+.+. .| .|-+ +
T Consensus 106 s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~ 185 (282)
T TIGR01859 106 SHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEP 185 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCC
Confidence 5689999999999999887 56553211110 00113444455554 799998874 33 3322 2
Q ss_pred CCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CH
Q psy9711 65 KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DN 121 (198)
Q Consensus 65 ~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~ 121 (198)
..+ ++..++|.+.+++|++++- |..++.+.+.++.+. ++.+|=.. ++
T Consensus 186 ~l~----~e~L~~i~~~~~iPlv~hG-----gSGi~~e~i~~~i~~-Gi~kiNv~T~l 233 (282)
T TIGR01859 186 GLD----FERLKEIKELTNIPLVLHG-----ASGIPEEQIKKAIKL-GIAKINIDTDC 233 (282)
T ss_pred ccC----HHHHHHHHHHhCCCEEEEC-----CCCCCHHHHHHHHHc-CCCEEEECcHH
Confidence 222 4566888888899999865 335778888888866 57776666 44
No 141
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.48 E-value=1.2 Score=37.99 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhc----C----CeEEEeC--C-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC-CHHH
Q psy9711 9 EEEKLKIISTLRQET----K----KTIIAGT--Y-------CESTRATIDLTQKAAKAGANAALILCPYYFQKKM-TEDL 70 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~----~----~pvi~gv--~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~-~~~~ 70 (198)
.+-|.+++..+++++ + .++.+|+ + +.+.+|+++.++.+++.|+|.+-+....+..... ....
T Consensus 190 lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~ 269 (353)
T cd04735 190 LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDD 269 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcc
Confidence 466776666655555 3 3344443 2 3457899999999999999999998765433210 0111
Q ss_pred HHHHHHHHHccC--CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 71 IYEHFISVADNS--PIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 71 i~~y~~~i~~~~--~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
-..+.+.+.+.. ++||+. .|.--+++...++.+.
T Consensus 270 ~~~~~~~ik~~~~~~iPVi~------~Ggi~t~e~ae~~l~~ 305 (353)
T cd04735 270 NQTIMELVKERIAGRLPLIA------VGSINTPDDALEALET 305 (353)
T ss_pred hHHHHHHHHHHhCCCCCEEE------ECCCCCHHHHHHHHHc
Confidence 233444555544 688875 3444478888877743
No 142
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.42 E-value=0.72 Score=40.32 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
..-.++.-.++++.+.+..++||++=++. +..+..++++.++++|+|++.+..-
T Consensus 149 ~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p-~~~~~~~~a~~~~~~Gadgi~~~Nt 202 (420)
T PRK08318 149 VGQVPELVEMYTRWVKRGSRLPVIVKLTP-NITDIREPARAAKRGGADAVSLINT 202 (420)
T ss_pred ccCCHHHHHHHHHHHHhccCCcEEEEcCC-CcccHHHHHHHHHHCCCCEEEEecc
Confidence 33456677778888877668999998885 5566889999999999999997543
No 143
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.40 E-value=1 Score=36.31 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEe---CCC--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAG---TYC--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~g---v~~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
+.++..+.+...++.+ +.++.+. +.. .+.++..+.++.+.++|++.+.+. +.....+ |+++.++++.+.
T Consensus 109 ~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G~~~--P~~v~~li~~l~ 185 (265)
T cd03174 109 SREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK-DTVGLAT--PEEVAELVKALR 185 (265)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec-hhcCCcC--HHHHHHHHHHHH
Confidence 3344444444444444 5555444 455 678889999999999999988764 4444444 999999999999
Q ss_pred ccCC-CCEEEE
Q psy9711 80 DNSP-IPVIIY 89 (198)
Q Consensus 80 ~~~~-~pi~lY 89 (198)
+..+ +|+-+|
T Consensus 186 ~~~~~~~~~~H 196 (265)
T cd03174 186 EALPDVPLGLH 196 (265)
T ss_pred HhCCCCeEEEE
Confidence 8886 777764
No 144
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=93.27 E-value=4.6 Score=34.28 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH----HHHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH----FISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y----~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
++.++...++|||++++.-|.-...+ ++...+| .+.|.+.. +.|++ |..- .+ ...+..+.+.
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~ls--p~~f~ef~~P~~k~i~~~i~~~~~~~~il-h~cg-~~-----~~~~~~~~~~ 259 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGALS--PADYREFVLPYMKRIVAELKREHPDVPVI-LFGK-GA-----GELLEAMAET 259 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCEE-EEcC-Cc-----HHHHHHHHhc
Confidence 55666667899999999888443333 7776644 47788766 23444 3322 12 2346667764
Q ss_pred C-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh--------H----HHHhh-cCCCeEEecccccch-----HHHH
Q psy9711 111 E-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY--------L----LSGLL-VGCAGGINALSAVLG-----GPIC 170 (198)
Q Consensus 111 p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~--------~----~~~l~-~G~~G~is~~~n~~P-----~~~~ 170 (198)
+ +++++=.. |+....+.+ +++..+..+.+.. + ...+. .+..|+|.+.++-+| +-+.
T Consensus 260 ~~~~is~d~~~dl~~~k~~~----g~~~~i~Gni~p~ll~gt~e~i~~~~~~~i~~~~~~gfIl~~Gc~i~~~tp~eNi~ 335 (346)
T PRK00115 260 GADVVGLDWTVDLAEARRRV----GDKKALQGNLDPAVLLAPPEAIEEEVRAILDGGGGPGHIFNLGHGILPETPPENVK 335 (346)
T ss_pred CCCEEeeCCCCCHHHHHHHc----CCCeEEEeCCChhHhcCCHHHHHHHHHHHHHHhCCCCeeeecCCcCCCCcCHHHHH
Confidence 3 77777666 877665443 3444444443321 1 11232 245677776665443 6666
Q ss_pred HHHHHHHc
Q psy9711 171 ELYDLAKA 178 (198)
Q Consensus 171 ~l~~~~~~ 178 (198)
.++++.++
T Consensus 336 a~v~a~~~ 343 (346)
T PRK00115 336 ALVEAVHE 343 (346)
T ss_pred HHHHHHHH
Confidence 77766653
No 145
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=93.24 E-value=2.2 Score=34.42 Aligned_cols=97 Identities=8% Similarity=0.033 Sum_probs=63.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
|+...-+++--.++++.+.+. ++||.+=+... +..+++++++.++++|+|++.+- ..|... +.--.++.++|.+
T Consensus 113 G~~Ll~dp~~l~~iv~av~~~-~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd-~~~~g~---~~a~~~~I~~i~~ 187 (231)
T TIGR00736 113 GQELLKNKELLKEFLTKMKEL-NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD-AMYPGK---PYADMDLLKILSE 187 (231)
T ss_pred chhhcCCHHHHHHHHHHHHcC-CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe-eCCCCC---chhhHHHHHHHHH
Confidence 444445666666777777733 88998866542 34578999999999999999885 333211 1123567777777
Q ss_pred cCC-CCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 81 NSP-IPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 81 ~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+++ +||+- .|--.+.+...+..+
T Consensus 188 ~~~~ipIIg------NGgI~s~eda~e~l~ 211 (231)
T TIGR00736 188 EFNDKIIIG------NNSIDDIESAKEMLK 211 (231)
T ss_pred hcCCCcEEE------ECCcCCHHHHHHHHH
Confidence 774 88665 344456666666554
No 146
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.19 E-value=4.3 Score=33.70 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC---------CCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC---------PYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~---------P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
|+..-++...+..+.-++.|+-+. -.++.++++|..++-++. |-.... |-+++.+.-++|++.
T Consensus 5 ~~~~~fR~l~~~~~~~~~pg~~d~------~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~--t~~e~~~~vrrI~~a 76 (289)
T COG2513 5 EPGAAFRALHASGDPLVLPGAWDA------GSALLAERAGFKALYLSGAGVAASLGLPDLGIT--TLDEVLADARRITDA 76 (289)
T ss_pred cHHHHHHHHHhCCCCEEecCCcCH------HHHHHHHHcCCeEEEeccHHHHHhcCCCccccc--cHHHHHHHHHHHHhh
Confidence 566666666655455667777653 246778899999998874 333333 489999999999999
Q ss_pred CCCCEEEEeCCCCcccccCHH-HHHHHHcCCCEEEEeeC-----------------CH----HHHHHHHhhcCCCCeEEE
Q psy9711 82 SPIPVIIYNNTFVTNIDISVD-TLVKLAHHENIRGVKDT-----------------DN----IKLANMANQTKDLNFSVF 139 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~-~l~~L~~~p~i~giK~s-----------------d~----~~~~~~~~~~~~~~~~v~ 139 (198)
+++||++==.-+ .|..+... ++.++. --++.|+-.+ +. .++........+++|.+.
T Consensus 77 ~~lPv~vD~dtG-fG~~~nvartV~~~~-~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ 154 (289)
T COG2513 77 VDLPVLVDIDTG-FGEALNVARTVRELE-QAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVII 154 (289)
T ss_pred cCCceEEeccCC-CCcHHHHHHHHHHHH-HcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 999999854322 33333332 333333 2345554333 22 233333322334678776
Q ss_pred ecChhhHH-----------HHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711 140 AGSAGYLL-----------SGLLVGCAGGINALSAVLGGPICELYDLAK 177 (198)
Q Consensus 140 ~G~d~~~~-----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~~ 177 (198)
.=.|..+. ....+|+|++..-.-+ -++.+.++.++++
T Consensus 155 ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-~~e~i~~f~~av~ 202 (289)
T COG2513 155 ARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-DLEEIRAFAEAVP 202 (289)
T ss_pred eehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-CHHHHHHHHHhcC
Confidence 54443322 2257899988643322 3778888877765
No 147
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=93.15 E-value=2.1 Score=36.94 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=82.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||......+++.+ +..+ .+.+++ ++++.+++++.+++.|+.++|+.+-.+ ..+ -++
T Consensus 168 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~~~~~G~~~~mv~~~~~-G~~--------~l~ 237 (366)
T cd08148 168 DQPFCPLRDRITEVAAALDRVQEETGEKKLYAVNVTA-GTFEIIERAERALELGANMLMVDVLTA-GFS--------ALQ 237 (366)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEecccc-chH--------HHH
Confidence 344567789976655555554 4344 557776 569999999999999999999864443 222 144
Q ss_pred HHHcc--CCCCEEEEeCCCCccc-------ccCHHHHH---HHH--c---CCCEEEEeeC-CHH---HHHHHHhhc---C
Q psy9711 77 SVADN--SPIPVIIYNNTFVTNI-------DISVDTLV---KLA--H---HENIRGVKDT-DNI---KLANMANQT---K 132 (198)
Q Consensus 77 ~i~~~--~~~pi~lYn~P~~tg~-------~l~~~~l~---~L~--~---~p~i~giK~s-d~~---~~~~~~~~~---~ 132 (198)
.+++. .++||..|-. .+|. -++.-++. ||+ + .|+..| |.+ +.+ ++.+.+++. .
T Consensus 238 ~l~~~~~~~l~IhaHrA--~~ga~~~~~~~G~~~~~l~kl~RLaGaD~~~~~t~~G-k~~~~~~~~~~~~~~~~~~~~~~ 314 (366)
T cd08148 238 ALAEDFEIDLPIHVHRA--MHGAVTRSKFHGISMLVLAKLLRMAGGDFIHTGTVVG-KMALEREEALGIADALTDDWAGF 314 (366)
T ss_pred HHHHhCcCCcEEEeccc--cccccccCCCCCcCHHHHHHHHHHcCCCccccCCccc-CcCCCHHHHHHHHHHHhCcccCC
Confidence 45542 4677766533 2221 14554444 555 2 367744 555 433 333333221 1
Q ss_pred CCCeEEEecChh--hHHHHh-hcCCCeEEeccccc
Q psy9711 133 DLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAV 164 (198)
Q Consensus 133 ~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~ 164 (198)
.+-|.+.+|.-. .+.+.+ ..|-|=++...+.+
T Consensus 315 k~~~Pv~sgG~~~~~vp~~~~~~G~Dvil~~GGgi 349 (366)
T cd08148 315 KRVFPVASGGIHPGLVPGILRDFGIDVILQAGGGI 349 (366)
T ss_pred CCceEeccCCCChhHHHHHHHHhCCcEEEEcCccc
Confidence 234667666432 232332 35766444444444
No 148
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=93.06 E-value=2 Score=36.24 Aligned_cols=115 Identities=11% Similarity=0.132 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeC--CC---CcHHHHHHHHHHHHhcCCCEEEEcCCCC----cCCCC---CHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGT--YC---ESTRATIDLTQKAAKAGANAALILCPYY----FQKKM---TEDLIY 72 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y----~~~~~---~~~~i~ 72 (198)
..-.++.-.++++.+++.+++||.+=+ +. .+.++++++++.+++.|++++.+.+-.- +.+.. ...--.
T Consensus 104 Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~ 183 (318)
T TIGR00742 104 LMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRY 183 (318)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhH
Confidence 334566667788888876677776643 32 2347889999999999999998876531 11110 011123
Q ss_pred HHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHH
Q psy9711 73 EHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANM 127 (198)
Q Consensus 73 ~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~ 127 (198)
++.+++.+.+ ++||+. .|--.+++...+..+ ++.|+=-+ |+.-+.++
T Consensus 184 ~~i~~vk~~~~~ipVi~------NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~ 236 (318)
T TIGR00742 184 ERVYQLKKDFPHLTIEI------NGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANV 236 (318)
T ss_pred HHHHHHHHhCCCCcEEE------ECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHH
Confidence 4556777777 799875 355567887777663 45566555 55555544
No 149
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=93.05 E-value=2.2 Score=37.29 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=94.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....-..+||...+..+++.+ +.. -.+.+++ ++.+.+++++.+++.|+.++|+.+-.+. .+ -++
T Consensus 180 dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~a~~~G~~~~mv~~~~~G-~~--------~~~ 249 (407)
T TIGR03332 180 ETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG-RTFDLKDKAKRAAELGADVLLFNVFAYG-LD--------VLQ 249 (407)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCcceEeecCCC-CHHHHHHHHHHHHHhCCCEEEEeccccC-hH--------HHH
Confidence 344566789988777777776 333 4557775 5788999999999999999999755432 21 245
Q ss_pred HHHc--cCCCCEEEEeCCCCcc-------cccCH----HHHHHHH--c---CCCEEEEeeC-CHHHHHHH---Hhhc---
Q psy9711 77 SVAD--NSPIPVIIYNNTFVTN-------IDISV----DTLVKLA--H---HENIRGVKDT-DNIKLANM---ANQT--- 131 (198)
Q Consensus 77 ~i~~--~~~~pi~lYn~P~~tg-------~~l~~----~~l~~L~--~---~p~i~giK~s-d~~~~~~~---~~~~--- 131 (198)
.+++ ..++||..+- ..+| .-++. ..+.||+ + .|++ +=|.+ +.....++ ++.-
T Consensus 250 ~l~~~~~~~lpihaHr--a~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~~~~~~~p~~~ 326 (407)
T TIGR03332 250 SLAEDDEIPVPIMAHP--AVSGAYTSSPFYGFSHSLLLGKLLRYAGADFSLFPSP-YGSVALEREDALAISKELTEDDAP 326 (407)
T ss_pred HHHhcCCCCcEEEEec--CcccccccCCCCcccHHHHHHHHHHhcCcCccccCCc-ccCCCCCHHHHHHHHHHHhccccC
Confidence 5554 3467774432 2222 13443 4455666 3 3676 55666 44433333 3211
Q ss_pred CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC
Q psy9711 132 KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK 180 (198)
Q Consensus 132 ~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd 180 (198)
..+-|.+.+|.-+ .+...+ ..|-|-++...+.++ -+.+++-|+++.+|.
T Consensus 327 ~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~ 387 (407)
T TIGR03332 327 FKKTFAVPSAGIHPGMVPLIMRDFGIDHIINAGGGIHGHPNGAQGGGRAFRAAIDAVLEAK 387 (407)
T ss_pred CCccEEecCCCcChhHHHHHHHHhCCceEEecCcccccCCCCchhhHHHHHHHHHHHhcCC
Confidence 1234777766443 233332 356554443333332 256777788887774
No 150
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=93.03 E-value=1.8 Score=37.12 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..|.+|-.+.+..+++.+ +..|..+. +..+.+..++.++.+.++|+|.+.+.-- .... +|+++.+.++.+.
T Consensus 105 ~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~--~P~~v~~lv~~l~ 181 (365)
T TIGR02660 105 RKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGIL--DPFSTYELVRALR 181 (365)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCC--CHHHHHHHHHHHH
Confidence 356666665555555655 56666654 3445788999999999999998765433 3333 4999999999999
Q ss_pred ccCCCCEEEEe
Q psy9711 80 DNSPIPVIIYN 90 (198)
Q Consensus 80 ~~~~~pi~lYn 90 (198)
+..++|+-+|-
T Consensus 182 ~~~~v~l~~H~ 192 (365)
T TIGR02660 182 QAVDLPLEMHA 192 (365)
T ss_pred HhcCCeEEEEe
Confidence 98888887763
No 151
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.02 E-value=1.9 Score=35.58 Aligned_cols=21 Identities=5% Similarity=0.235 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEE
Q psy9711 36 TRATIDLTQKAAKAGANAALI 56 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~ 56 (198)
.+..++.++.+.+.|+|.+-+
T Consensus 148 ~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 148 PERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 344444444444444444333
No 152
>KOG2335|consensus
Probab=92.97 E-value=1.4 Score=37.61 Aligned_cols=113 Identities=18% Similarity=0.189 Sum_probs=79.2
Q ss_pred CCccCCCCHHHHHHHHHHHHHhcCCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHH
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQETKKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISV 78 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i 78 (198)
||=+....++=-.++++.+....++||-+=+ ...+.++++++++..+++|++-+-+..-.=. +...++--=.+++++|
T Consensus 118 yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v 197 (358)
T KOG2335|consen 118 YGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAV 197 (358)
T ss_pred ccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHH
Confidence 4555556666666677777666577765533 3368999999999999999999988753311 1000122235788888
Q ss_pred HccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 79 ADNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 79 ~~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
-+..+ +|++. .|.-.+.+...+..+..++.||=-.
T Consensus 198 ~~~~~~ipvia------NGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 198 RENVPDIPVIA------NGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred HHhCcCCcEEe------eCCcCcHHHHHHHHHHhCCceEEec
Confidence 88886 99987 5777788888888888888887665
No 153
>PLN02489 homocysteine S-methyltransferase
Probab=92.96 E-value=4.4 Score=34.49 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
+.+|-+.+++.+.+.. ++|+++.++. .+..++++.+.. ..+++++.+-. -+ ++.+..-.+.
T Consensus 191 ~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC-----~~--p~~~~~~l~~ 261 (335)
T PLN02489 191 NKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADS--CKKVVAVGINC-----TP--PRFIHGLILS 261 (335)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHh--cCCceEEEecC-----CC--HHHHHHHHHH
Confidence 4567777777776665 7898887642 234555555432 23566666653 12 7778888888
Q ss_pred HHccCCCCEEEEeCCCCc----------ccccCHHHHHHHH----cC-CCEEEEeeC-CHHHHHHHH
Q psy9711 78 VADNSPIPVIIYNNTFVT----------NIDISVDTLVKLA----HH-ENIRGVKDT-DNIKLANMA 128 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~t----------g~~l~~~~l~~L~----~~-p~i~giK~s-d~~~~~~~~ 128 (198)
+...++.|+++|-|.+.. ..+++++.+.+.+ +. -+|+|=-.. .+..++.+.
T Consensus 262 l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~ 328 (335)
T PLN02489 262 IRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLIGGCCRTTPNTIRAIS 328 (335)
T ss_pred HHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCCHHHHHHHH
Confidence 888888999999884211 2345666555554 22 467777666 777776655
No 154
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=92.96 E-value=5 Score=33.81 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=73.1
Q ss_pred HHHHHHHHHhc--CCeEEEeCCCCcH------------------------------HHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 13 LKIISTLRQET--KKTIIAGTYCEST------------------------------RATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 13 ~~l~~~~~~~~--~~pvi~gv~~~~~------------------------------~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
.+.++.+.+.. ++||+..++++=| +-.++.++...++|||++.+.-|.
T Consensus 124 leai~~l~~~~~~~~pv~g~v~gP~Tla~~l~g~~~~~~~l~~~pe~~~~ll~~i~~~~~~~~~~~~~aGad~I~i~d~~ 203 (339)
T PRK06252 124 LEAIKILKEKVGEEVPIIAGLTGPISLASSLMGPKNFLKWLIKKPELAHEFLDFVTDFCIEYAKAQLEAGADVICIADPS 203 (339)
T ss_pred HHHHHHHHHHcCCcCceeCccCChHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 34455555555 5889888777621 233667777789999999999886
Q ss_pred CcCCCCCHHHHH----HHHHHHHccCCC-CEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC-CHHHHHHHHhhcCC
Q psy9711 61 YFQKKMTEDLIY----EHFISVADNSPI-PVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT-DNIKLANMANQTKD 133 (198)
Q Consensus 61 y~~~~~~~~~i~----~y~~~i~~~~~~-pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s-d~~~~~~~~~~~~~ 133 (198)
-...-.+++... .|++.+.+...- +.++|.. |. ....+..+.+.+ ++..+=.. |+....+.+ +
T Consensus 204 a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~c----G~--~~~~l~~~~~~g~d~~~~d~~~dl~~~~~~~----g 273 (339)
T PRK06252 204 ASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHIC----GD--LTSILEEMADCGFDGISIDEKVDVKTAKENV----G 273 (339)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEEC----CC--chHHHHHHHhcCCCeeccCCCCCHHHHHHHh----C
Confidence 432112366655 455888887754 6666654 22 134567777643 56655555 776654433 3
Q ss_pred CCeEEEecChh
Q psy9711 134 LNFSVFAGSAG 144 (198)
Q Consensus 134 ~~~~v~~G~d~ 144 (198)
++..+..+.|.
T Consensus 274 ~~~~i~Gnidp 284 (339)
T PRK06252 274 DRAALIGNVST 284 (339)
T ss_pred CCeEEEeccCc
Confidence 44555554443
No 155
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=92.95 E-value=3.8 Score=32.46 Aligned_cols=140 Identities=12% Similarity=0.128 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe-
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN- 90 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn- 90 (198)
-.++++.+.+.+++||++|-|=.+.+++ +.+.+.||+.+++..-.+.. ++.+.+..+...++..+++=+.+
T Consensus 62 ~~~~i~~i~~~~~~pv~~~GGI~~~ed~----~~~~~~Ga~~vilg~~~l~~----~~~l~ei~~~~~~~i~vsid~k~~ 133 (233)
T PRK00748 62 NLELIEAIVKAVDIPVQVGGGIRSLETV----EALLDAGVSRVIIGTAAVKN----PELVKEACKKFPGKIVVGLDARDG 133 (233)
T ss_pred cHHHHHHHHHHCCCCEEEcCCcCCHHHH----HHHHHcCCCEEEECchHHhC----HHHHHHHHHHhCCCceeeeeccCC
Confidence 3456666666668999997776666665 34455799999887766543 43344333333222222222211
Q ss_pred ----CCCCcccccCH-HHHHHHHcC--CCEEEEeeC--------CHHHHHHHHhhcCCCCeEEE-ec-Ch--hhHHHHhh
Q psy9711 91 ----NTFVTNIDISV-DTLVKLAHH--ENIRGVKDT--------DNIKLANMANQTKDLNFSVF-AG-SA--GYLLSGLL 151 (198)
Q Consensus 91 ----~P~~tg~~l~~-~~l~~L~~~--p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~-~G-~d--~~~~~~l~ 151 (198)
.........++ +...++.+. ..|...-.+ |+..+.++.+ ..+ +.++ +| .. ..+...+.
T Consensus 134 ~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~-~~~--ipvia~GGi~~~~di~~~~~ 210 (233)
T PRK00748 134 KVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAA-AVP--IPVIASGGVSSLDDIKALKG 210 (233)
T ss_pred EEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH-hCC--CCEEEeCCCCCHHHHHHHHH
Confidence 11111124454 444455443 335554232 5666676653 333 3343 33 22 24556677
Q ss_pred cC-CCeEEeccc
Q psy9711 152 VG-CAGGINALS 162 (198)
Q Consensus 152 ~G-~~G~is~~~ 162 (198)
.| ++|++.|.+
T Consensus 211 ~g~~~gv~vg~a 222 (233)
T PRK00748 211 LGAVEGVIVGRA 222 (233)
T ss_pred cCCccEEEEEHH
Confidence 78 999998876
No 156
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=92.82 E-value=1.9 Score=37.68 Aligned_cols=167 Identities=18% Similarity=0.133 Sum_probs=95.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.......+||......+++.+ + +--.+.+++ ++++.+++++.+++.|+.++|+.+-.+ ..+ -++
T Consensus 175 ~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~~em~~ra~~a~~~G~~~~m~~~~~~-G~~--------al~ 244 (407)
T PRK09549 175 ENALTPFEKRIVAGKEVLQEVYETTGHKTLYAVNLTG-RTFELKEKAKRAAEAGADALLFNVFAY-GLD--------VLQ 244 (407)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEEecCC-CHHHHHHHHHHHHHcCCCeEEEecccc-chH--------HHH
Confidence 455667889988777777666 3 334557776 578999999999999999999975333 222 144
Q ss_pred HHHc--cCCCCEEEEeCC-------CCccccc--CHHHHHHHH--c---CCCEEEEeeC-CHHH---HHHHHhhc---CC
Q psy9711 77 SVAD--NSPIPVIIYNNT-------FVTNIDI--SVDTLVKLA--H---HENIRGVKDT-DNIK---LANMANQT---KD 133 (198)
Q Consensus 77 ~i~~--~~~~pi~lYn~P-------~~tg~~l--~~~~l~~L~--~---~p~i~giK~s-d~~~---~~~~~~~~---~~ 133 (198)
.+++ ..++||..+-.- ...|++. -...+.||+ + .|++ +=|.. +... +.+.+++. ..
T Consensus 245 ~l~~~~~~~lpIhaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~-~Gk~~~~~~~~~~~~~~~~~~~~~~k 323 (407)
T PRK09549 245 SLAEDPEIPVPIMAHPAVSGAYTPSPLYGISSPLLLGKLLRYAGADFSLFPSP-YGSVALEKEEALAIAKELTEDDDPFK 323 (407)
T ss_pred HHHhcCCCCcEEEecCCcccccccCCCCcCcHHHHHHHHHHHcCCCccccCCC-cCCcCCCHHHHHHHHHHHhccccCCC
Confidence 4454 346776644321 0123332 134455666 3 2565 45666 4433 33333221 12
Q ss_pred CCeEEEecChh--hHHHHh-hcCCCeEEecccccc---------hHHHHHHHHHHHcCC
Q psy9711 134 LNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL---------GGPICELYDLAKAGK 180 (198)
Q Consensus 134 ~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~---------P~~~~~l~~~~~~gd 180 (198)
+-|.+.+|.-+ .+...+ ..|-|-++...+.++ -..+++-|+++.+|.
T Consensus 324 ~~~Pv~sGG~~~~~~p~~~~~~G~D~il~~GGgi~gHp~G~~aGa~A~rqA~ea~~~g~ 382 (407)
T PRK09549 324 RSFPVPSAGIHPGLVPLLIRDFGKDVVINAGGGIHGHPNGAQGGGKAFRAAIDAVLQGK 382 (407)
T ss_pred ccEEeecCCCChhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCC
Confidence 34777776543 232332 356554443333332 157778888888875
No 157
>PRK06852 aldolase; Validated
Probab=92.63 E-value=5.5 Score=33.46 Aligned_cols=160 Identities=9% Similarity=0.028 Sum_probs=93.2
Q ss_pred CCeEEEeCCCCc----------HHHHHHHHHHHHhcC------CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CC
Q psy9711 24 KKTIIAGTYCES----------TRATIDLTQKAAKAG------ANAALILCPYYFQKKMTEDLIYEHFISVADNS---PI 84 (198)
Q Consensus 24 ~~pvi~gv~~~~----------~~~~i~~a~~a~~~G------ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~ 84 (198)
++|+|+.+++.+ ....+--.+.|.++| ||+|.+.-..- .. .+.+.++...+|++.+ ++
T Consensus 92 ~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~--~E~~ml~~l~~v~~ea~~~Gl 168 (304)
T PRK06852 92 DVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SE--YESEMLSEAAQIIYEAHKHGL 168 (304)
T ss_pred CCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecC-CH--HHHHHHHHHHHHHHHHHHhCC
Confidence 689999876531 112334467788878 88888863322 22 2677777787777665 79
Q ss_pred CEEEEeCCCCc--ccccCHHHH---HHHH-cC-CCEEEEeeC------CHHHHHHHHhhcCCCCeEEEecChh-------
Q psy9711 85 PVIIYNNTFVT--NIDISVDTL---VKLA-HH-ENIRGVKDT------DNIKLANMANQTKDLNFSVFAGSAG------- 144 (198)
Q Consensus 85 pi~lYn~P~~t--g~~l~~~~l---~~L~-~~-p~i~giK~s------d~~~~~~~~~~~~~~~~~v~~G~d~------- 144 (198)
|+++.=.|... ...-.++.+ .|++ ++ ..|+=+|.+ |.+.+.++.. ..++--.++.|-..
T Consensus 169 Pll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~-~~g~vpVviaGG~k~~~~e~L 247 (304)
T PRK06852 169 IAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVL-AAGRTKVVCAGGSSTDPEEFL 247 (304)
T ss_pred cEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHH-hCCCCcEEEeCCCCCCHHHHH
Confidence 99976555421 112344444 4666 55 478888885 3678888773 44233235555322
Q ss_pred -hHHHHhh-cCCCeEEecccccc----h--HH-HHHHHHHHHcC-CHHHHHHHH
Q psy9711 145 -YLLSGLL-VGCAGGINALSAVL----G--GP-ICELYDLAKAG-KWEEAMKLQ 188 (198)
Q Consensus 145 -~~~~~l~-~G~~G~is~~~n~~----P--~~-~~~l~~~~~~g-d~~~A~~l~ 188 (198)
+...++. .|+.|++.|= |+| | .. +..+..-+..+ ..++|.++.
T Consensus 248 ~~v~~ai~~aGa~Gv~~GR-NIfQ~~~p~~~~~~~Ai~~IVH~~~s~~eA~~~~ 300 (304)
T PRK06852 248 KQLYEQIHISGASGNATGR-NIHQKPLDEAVRMCNAIYAITVEDKSVEEALKIY 300 (304)
T ss_pred HHHHHHHHHcCCceeeech-hhhcCCCchHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 2234567 7999988774 665 4 22 23333333333 567776654
No 158
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=92.55 E-value=4.4 Score=32.16 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEE-EeCCCCcccccCHHHHHHHHc
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVII-YNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~l-Yn~P~~tg~~l~~~~l~~L~~ 109 (198)
|...++.-+..++.|.+.|||.+-+..++-.-.+...+.+.+-.++|.+.+ ++|+.+ +. ++. ++.+.+.+.++
T Consensus 65 G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE----~~~-L~~~ei~~a~~ 139 (211)
T TIGR00126 65 GASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIE----TGL-LTDEEIRKACE 139 (211)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEe----cCC-CCHHHHHHHHH
Confidence 556677778889999999999999998874322224888889999999887 577665 33 444 67676665554
Q ss_pred ---CCCEEEEeeC-C-------HHHHHHHHhhcCCCC--eEEEecCh--hhHHHHhhcCCC
Q psy9711 110 ---HENIRGVKDT-D-------NIKLANMANQTKDLN--FSVFAGSA--GYLLSGLLVGCA 155 (198)
Q Consensus 110 ---~p~i~giK~s-d-------~~~~~~~~~~~~~~~--~~v~~G~d--~~~~~~l~~G~~ 155 (198)
--+...+|-| - +.....+. +..+++ +..-.|.- ......+.+|++
T Consensus 140 ia~eaGADfvKTsTGf~~~gat~~dv~~m~-~~v~~~v~IKaaGGirt~~~a~~~i~aGa~ 199 (211)
T TIGR00126 140 ICIDAGADFVKTSTGFGAGGATVEDVRLMR-NTVGDTIGVKASGGVRTAEDAIAMIEAGAS 199 (211)
T ss_pred HHHHhCCCEEEeCCCCCCCCCCHHHHHHHH-HHhccCCeEEEeCCCCCHHHHHHHHHHhhH
Confidence 3578888887 2 24433333 222334 43344433 234556666764
No 159
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=92.50 E-value=2.3 Score=34.38 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeC------CCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGT------YCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv------~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
..|+.++|.++++.+.+.- ++.-=+|. ...++.+-++++++.-++||+.||+-.
T Consensus 95 ~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 95 MEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred cCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 6789999999999999874 22222232 124568889999999999999999964
No 160
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.48 E-value=1.5 Score=36.50 Aligned_cols=102 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc---------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES---------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE 68 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~---------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~ 68 (198)
+..++.+|-.+..+.+++.+ +++| +-.+++.. ..+.-+-.+++++.|+|.+-+.--.-...-..
T Consensus 105 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~- 183 (283)
T PRK07998 105 GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI- 183 (283)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-
Q ss_pred HHH-HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 69 DLI-YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 69 ~~i-~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
..+ ++-+++|.+++++|+++ ..|..++.+.+.+..+..
T Consensus 184 p~l~~~~l~~I~~~~~vPLVl-----HGgSG~~~e~~~~ai~~G 222 (283)
T PRK07998 184 PRIDIPLLKRIAEVSPVPLVI-----HGGSGIPPEILRSFVNYK 222 (283)
T ss_pred CCcCHHHHHHHHhhCCCCEEE-----eCCCCCCHHHHHHHHHcC
No 161
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=92.47 E-value=4.2 Score=32.58 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ 63 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~ 63 (198)
.++++.+.+.+++||+++=|-.+.+++.++.. .|++++++....+..
T Consensus 60 ~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~----~G~~~v~ig~~~~~~ 106 (243)
T cd04731 60 LDVVERVAEEVFIPLTVGGGIRSLEDARRLLR----AGADKVSINSAAVEN 106 (243)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH----cCCceEEECchhhhC
Confidence 45666666666899999877777777655544 699999998766644
No 162
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=92.44 E-value=0.89 Score=39.73 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=49.9
Q ss_pred HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE-EEEeCCCC--------cccccCHHHHHHHHcCC
Q psy9711 41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV-IIYNNTFV--------TNIDISVDTLVKLAHHE 111 (198)
Q Consensus 41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi-~lYn~P~~--------tg~~l~~~~l~~L~~~p 111 (198)
+.++.|...|+..++.. |.-.....+.+++ +++.+.++.. |+ ++++.|.. .|..+..+.+.++.+.|
T Consensus 27 ~~~~~a~~~GvTtvv~~-p~~~~~v~g~~~~-~~~~~~a~~~--p~~~~~~~p~~vp~t~~e~~g~~~~~~~i~~l~~~~ 102 (422)
T cd01295 27 EFAKAVLPHGTTTVIAD-PHEIANVAGVDGI-EFMLEDAKKT--PLDIFWMLPSCVPATPFETSGAELTAEDIKELLEHP 102 (422)
T ss_pred HHHHHHHCCCcEEEEeC-CCCCCcCCCHHHH-HHHHHHHhCC--CceEEEeCCCcCCCCCCCCCCCcCCHHHHHHHhcCC
Confidence 46888899999998885 4333222224544 4555555544 54 35566652 23456788889998889
Q ss_pred CEEEEeeC
Q psy9711 112 NIRGVKDT 119 (198)
Q Consensus 112 ~i~giK~s 119 (198)
+|+|+|+.
T Consensus 103 ~vvglgE~ 110 (422)
T cd01295 103 EVVGLGEV 110 (422)
T ss_pred CCcEEEEe
Confidence 99999997
No 163
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=92.41 E-value=6 Score=33.39 Aligned_cols=126 Identities=18% Similarity=0.087 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH----HHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF----ISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~----~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
.++.++...++|+|++++..|.....+ +++..+|. ++|.+.. +.|+ +|+.-. + ...+..+++
T Consensus 182 ~~~~~~~~~eaGad~i~i~d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~cg~-~-----~~~~~~~~~ 252 (338)
T TIGR01464 182 TIEYLVEQVKAGAQAVQIFDSWAGALS--PEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFAKG-A-----GHLLEELAE 252 (338)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeCC-c-----HHHHHHHHh
Confidence 356667667899999999887443333 77776554 6777654 3455 444321 1 245777777
Q ss_pred CC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh--------H----HHHhhcCC--CeEEecccccch-----HH
Q psy9711 110 HE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY--------L----LSGLLVGC--AGGINALSAVLG-----GP 168 (198)
Q Consensus 110 ~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~--------~----~~~l~~G~--~G~is~~~n~~P-----~~ 168 (198)
.+ ++.++=.. |+....+.+ +++..+..+.+.. + ...+..+. .|.|.++++-+| +-
T Consensus 253 ~~~~~~s~d~~~dl~e~~~~~----~~~~~i~Gni~p~~l~gt~e~i~~~v~~~l~~~~~~~g~Il~~Gc~i~~~tp~en 328 (338)
T TIGR01464 253 TGADVVGLDWTVDLKEARKRV----GPGVAIQGNLDPAVLYAPEEALEEKVEKILEAFGGKSRYIFNLGHGILPDTPPEN 328 (338)
T ss_pred cCCCEEEeCCCCCHHHHHHHh----CCCeeEEeCCChHHhcCCHHHHHHHHHHHHHHhccCCCceecCCCcCCCCcCHHH
Confidence 55 67666555 776655443 3444444444421 1 12233222 456766665443 55
Q ss_pred HHHHHHHHH
Q psy9711 169 ICELYDLAK 177 (198)
Q Consensus 169 ~~~l~~~~~ 177 (198)
+..+.++.+
T Consensus 329 i~a~v~a~~ 337 (338)
T TIGR01464 329 VKALVEYVH 337 (338)
T ss_pred HHHHHHHHh
Confidence 566666544
No 164
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=92.39 E-value=4.4 Score=31.81 Aligned_cols=111 Identities=15% Similarity=0.095 Sum_probs=64.3
Q ss_pred HHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc-ccccC---HHHHHHHHcCCCEEEEeeC
Q psy9711 44 QKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT-NIDIS---VDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 44 ~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t-g~~l~---~~~l~~L~~~p~i~giK~s 119 (198)
+.+.++|||.+.+.+- .. .+.+.+..+ .++..++++++-=.|... +...- .+.+.+++..|...|.|..
T Consensus 74 ~~~~~~gad~vtvh~e----~g--~~~l~~~i~-~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 74 EAVFEAGAWGIIVHGF----TG--RDSLKAVVE-AAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred HHHHhCCCCEEEEcCc----CC--HHHHHHHHH-HHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC
Confidence 6677899998887643 11 333433333 345567787664344321 11211 2233344456889999988
Q ss_pred --CHHHHHHHHhhcCCCCeEEEec-Chh---hHHHHhhcCCCeEEeccc
Q psy9711 120 --DNIKLANMANQTKDLNFSVFAG-SAG---YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 120 --d~~~~~~~~~~~~~~~~~v~~G-~d~---~~~~~l~~G~~G~is~~~ 162 (198)
...++.++. +..+.++.++.| -.. .....+..|+++++.|.+
T Consensus 147 ~~~~~~i~~l~-~~~~~~~~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~ 194 (215)
T PRK13813 147 ATRPERVRYIR-SRLGDELKIISPGIGAQGGKAADAIKAGADYVIVGRS 194 (215)
T ss_pred CCcchhHHHHH-HhcCCCcEEEeCCcCCCCCCHHHHHHcCCCEEEECcc
Confidence 556666654 333445554433 222 256778899999998864
No 165
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=92.36 E-value=5.8 Score=33.11 Aligned_cols=129 Identities=18% Similarity=0.085 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
.++.++...++|+|++.+.-|.-...-++++.. ..|++++.+.. +.|+++|..-. + ...+..+.+.+
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~-~-----~~~~~~l~~~~ 243 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGD-T-----APILELMADLG 243 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCC-c-----hhHHHHHHHhC
Confidence 466677777889999999988754431136544 45557777765 47888887522 1 15567777654
Q ss_pred -CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh-H-H------------HHhhc-CC--CeEEecccccc-----hH
Q psy9711 112 -NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY-L-L------------SGLLV-GC--AGGINALSAVL-----GG 167 (198)
Q Consensus 112 -~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~-~-~------------~~l~~-G~--~G~is~~~n~~-----P~ 167 (198)
++..+-.. |+....+.+ +++..+..|.|.. . . ..+.. +. .|+|.+.++-. ++
T Consensus 244 ~d~~~~d~~~dl~~~~~~~----g~~~~i~G~id~~~~l~~gt~eei~~~v~~~l~~~~~~~~~~il~~gc~i~~~~p~e 319 (330)
T cd03465 244 ADVFSIDVTVDLAEAKKKV----GDKACLMGNLDPIDVLLNGSPEEIKEEVKELLEKLLKGGGGYILSSGCEIPPDTPIE 319 (330)
T ss_pred CCeEeecccCCHHHHHHHh----CCceEEEeCcChHHhhcCCCHHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCHH
Confidence 66666555 776554433 4455555555543 1 1 11221 22 56666665433 46
Q ss_pred HHHHHHHHHH
Q psy9711 168 PICELYDLAK 177 (198)
Q Consensus 168 ~~~~l~~~~~ 177 (198)
-+..++++++
T Consensus 320 nl~a~v~a~~ 329 (330)
T cd03465 320 NIKAMIDAVR 329 (330)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 166
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=92.35 E-value=2.8 Score=34.29 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
+.+.++.+++.|.. +.+.+|+-...+ ++.+.+..+.+.
T Consensus 116 ~~~~i~~a~~~G~~-v~~~~~~~~~~~--~~~~~~~~~~~~ 153 (268)
T cd07940 116 AVEAVEYAKSHGLD-VEFSAEDATRTD--LDFLIEVVEAAI 153 (268)
T ss_pred HHHHHHHHHHcCCe-EEEeeecCCCCC--HHHHHHHHHHHH
Confidence 33444444555533 333333333322 444444444443
No 167
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=92.34 E-value=2 Score=35.70 Aligned_cols=101 Identities=6% Similarity=0.122 Sum_probs=64.6
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES-----------TRATIDLTQKAAKAGANAALILCPY---YFQ 63 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~ 63 (198)
+..|+.+|-.++.+.+++.+ ++.| +-.+++.. ..+.-+-.+++++.|+|.+-+.--. .++
T Consensus 105 gS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~ 184 (286)
T PRK12738 105 GSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS 184 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCC
Confidence 46789999999999999998 5555 22232110 1122334455667899988887422 122
Q ss_pred CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
.. ++=-++-.++|.+.+++|++++= |..++.+.+.+..+..
T Consensus 185 ~~--p~Ldfd~l~~I~~~~~vPLVLHG-----gSG~~~e~~~kai~~G 225 (286)
T PRK12738 185 KT--PKIDFQRLAEIREVVDVPLVLHG-----ASDVPDEFVRRTIELG 225 (286)
T ss_pred CC--CcCCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence 11 33235677788888899999964 4457788888877543
No 168
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=92.33 E-value=1.3 Score=35.32 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
|.+|-.+.++.+++.+ +..|..+. +..+.++..+.++.+.++|+|.+.+.-- +...+ |+++.++++.+-+.
T Consensus 102 ~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt-~G~~~--P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 102 SREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADT-VGIMT--PEDVAELVRALREA 178 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEET-TS-S---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCc-cCCcC--HHHHHHHHHHHHHh
Confidence 3344444444444444 44454443 3334566666666666666666555422 22222 66666666666666
Q ss_pred CC-CCEEEE
Q psy9711 82 SP-IPVIIY 89 (198)
Q Consensus 82 ~~-~pi~lY 89 (198)
.+ +|+-+|
T Consensus 179 ~~~~~l~~H 187 (237)
T PF00682_consen 179 LPDIPLGFH 187 (237)
T ss_dssp STTSEEEEE
T ss_pred ccCCeEEEE
Confidence 65 555543
No 169
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=92.33 E-value=0.82 Score=36.30 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 13 LKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..+.+-+.+++ +.-+.. +-+..+.++.++.++.+.+.|+|++++.|+.. +.....++.+. ..++||+.
T Consensus 14 ~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-------~~~~~~l~~~~-~~gIpvv~ 85 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDP-------DSLAPFLEKAK-AAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSST-------TTTHHHHHHHH-HTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCH-------HHHHHHHHHHh-hcCceEEE
Confidence 33444454444 666655 67888889999999999999999999887653 22335555544 45999999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 86 ~d~~ 89 (257)
T PF13407_consen 86 VDSD 89 (257)
T ss_dssp ESST
T ss_pred Eecc
Confidence 9987
No 170
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=92.26 E-value=6.3 Score=33.30 Aligned_cols=120 Identities=11% Similarity=-0.004 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhc-CCCEEEEcCCCCcC--CCCCHHHHH----HHHHHHHccC----CCCEEEEeCCCCcccccCHHHHH
Q psy9711 37 RATIDLTQKAAKA-GANAALILCPYYFQ--KKMTEDLIY----EHFISVADNS----PIPVIIYNNTFVTNIDISVDTLV 105 (198)
Q Consensus 37 ~~~i~~a~~a~~~-Gad~v~~~~P~y~~--~~~~~~~i~----~y~~~i~~~~----~~pi~lYn~P~~tg~~l~~~~l~ 105 (198)
+-.++.++...++ |+|++.+.-+.-.. .-++++... -|+++|.+.. +.|+++|.. |.. ...+.
T Consensus 155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~c----G~~--~~~l~ 228 (321)
T cd03309 155 DAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSC----GAA--ASLVP 228 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeC----CCc--HHHHH
Confidence 4446666655666 99999986543221 001266555 4557888766 468888764 322 34577
Q ss_pred HHHcCC-CEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhH--------------HHHhh-cCC-CeEEecccccch
Q psy9711 106 KLAHHE-NIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYL--------------LSGLL-VGC-AGGINALSAVLG 166 (198)
Q Consensus 106 ~L~~~p-~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~--------------~~~l~-~G~-~G~is~~~n~~P 166 (198)
.+.+.+ +++.+-.. |+....+.+ ++++.+..+.|..+ ...+. .|. .|+|.+.++-.|
T Consensus 229 ~~~e~g~dvl~~d~~~~dl~eak~~~----g~k~~l~GNlDp~~L~~~~t~E~i~~~v~~~l~~~g~~~~fIf~~~~~~~ 304 (321)
T cd03309 229 SMAEMGVDSWNVVMTANNTAELRRLL----GDKVVLAGAIDDVALDTATWPEEDARGVAKAAAECAPIHPFISAPTAGLP 304 (321)
T ss_pred HHHHcCCCEEEecCCCCCHHHHHHHh----CCCeEEEcCCChHHhcCCCCHHHHHHHHHHHHHHhCCCCCEEeCccCCCC
Confidence 777654 67776444 665554433 34444443333211 11122 353 788888876666
No 171
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=92.20 E-value=2.6 Score=36.17 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..|.+|-.+.+..+++.+ +..|.++. +..+.+..++.++.+.++|+|.+.+.-.. ... +|+++.+.++.+.
T Consensus 104 ~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~-G~~--~P~~v~~li~~l~ 180 (363)
T TIGR02090 104 KKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV-GVL--TPQKMEELIKKLK 180 (363)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-Ccc--CHHHHHHHHHHHh
Confidence 346666666555555555 55665553 44567889999999999999988776544 333 4999999999999
Q ss_pred ccCCCCEEEE
Q psy9711 80 DNSPIPVIIY 89 (198)
Q Consensus 80 ~~~~~pi~lY 89 (198)
+..++|+-+|
T Consensus 181 ~~~~~~l~~H 190 (363)
T TIGR02090 181 ENVKLPISVH 190 (363)
T ss_pred cccCceEEEE
Confidence 8888887665
No 172
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.18 E-value=1.6 Score=36.90 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y 61 (198)
..++++.+.+..++||++=.+. ...+..+.++.+++.|+|++.+..-.+
T Consensus 153 ~~eil~~v~~~~~iPV~vKl~p-~~~~~~~~a~~l~~~G~dgI~~~n~~~ 201 (334)
T PRK07565 153 YLDILRAVKSAVSIPVAVKLSP-YFSNLANMAKRLDAAGADGLVLFNRFY 201 (334)
T ss_pred HHHHHHHHHhccCCcEEEEeCC-CchhHHHHHHHHHHcCCCeEEEECCcC
Confidence 4467777766558999988765 445788899999999999999986643
No 173
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.16 E-value=6.6 Score=33.26 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG--ANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
+.++.||+.+.++..... ++++ +++...+.+..+.+....++| +|.+.+=+-.- ..+.+.+..+.|.+..
T Consensus 64 hK~~~E~~~sfvrk~k~~-~L~v--~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg-----~s~~~~~~i~~i~~~~ 135 (321)
T TIGR01306 64 HRFDEESRIPFIKDMQER-GLFA--SISVGVKACEYEFVTQLAEEALTPEYITIDIAHG-----HSNSVINMIKHIKTHL 135 (321)
T ss_pred ecCCHHHHHHHHHhcccc-ccEE--EEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccC-----chHHHHHHHHHHHHhC
Confidence 346888888864332211 4444 444445777788888888888 68877754431 2677888888888888
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------------CH--HHHHHHHhhcCCCCeEEE-ecC--
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------------DN--IKLANMANQTKDLNFSVF-AGS-- 142 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------------d~--~~~~~~~~~~~~~~~~v~-~G~-- 142 (198)
+.|.++ .|...+.+...+|.+. .+.|||.+ .. .++..+..-....++.|+ .|.
T Consensus 136 p~~~vi------~GnV~t~e~a~~l~~a-Gad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr 208 (321)
T TIGR01306 136 PDSFVI------AGNVGTPEAVRELENA-GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIR 208 (321)
T ss_pred CCCEEE------EecCCCHHHHHHHHHc-CcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcC
Confidence 888655 3434588888888753 33444433 01 122222210111234444 332
Q ss_pred -hhhHHHHhhcCCCeEEecc
Q psy9711 143 -AGYLLSGLLVGCAGGINAL 161 (198)
Q Consensus 143 -d~~~~~~l~~G~~G~is~~ 161 (198)
......++.+|+++++.+.
T Consensus 209 ~~~Di~KALa~GAd~Vmig~ 228 (321)
T TIGR01306 209 THGDIAKSIRFGASMVMIGS 228 (321)
T ss_pred cHHHHHHHHHcCCCEEeech
Confidence 2356788999999988664
No 174
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.07 E-value=4.9 Score=31.65 Aligned_cols=152 Identities=17% Similarity=0.148 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
+|+.++..+.++.+.+... .+++|+|+--+.+ .++.+.++|++.++ +|.+ .+++.++ |.+.++|
T Consensus 36 t~~tp~a~~~I~~l~~~~~-~~~vGAGTVl~~e---~a~~ai~aGA~Fiv--SP~~------~~~vi~~----a~~~~i~ 99 (201)
T PRK06015 36 TLRTPAALDAIRAVAAEVE-EAIVGAGTILNAK---QFEDAAKAGSRFIV--SPGT------TQELLAA----ANDSDVP 99 (201)
T ss_pred eCCCccHHHHHHHHHHHCC-CCEEeeEeCcCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHH----HHHcCCC
Confidence 4566667777777776542 2778888765554 56788899999655 4543 5666666 3445566
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---C---HHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCe
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---D---NIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---d---~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G 156 (198)
++ | |. ++|..+.+-.+. ...-+|.= . +..+..+. .-. |++.++ .|-+ +.+...+.+|+..
T Consensus 100 ~i----P---G~-~TptEi~~A~~~-Ga~~vK~FPa~~~GG~~yikal~-~pl-p~~~l~ptGGV~~~n~~~~l~ag~~~ 168 (201)
T PRK06015 100 LL----P---GA-ATPSEVMALREE-GYTVLKFFPAEQAGGAAFLKALS-SPL-AGTFFCPTGGISLKNARDYLSLPNVV 168 (201)
T ss_pred Ee----C---CC-CCHHHHHHHHHC-CCCEEEECCchhhCCHHHHHHHH-hhC-CCCcEEecCCCCHHHHHHHHhCCCeE
Confidence 54 3 43 455544444333 22346654 1 34444443 222 555555 3443 3567788899887
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
++. .++++|... ..++|+++..+..+..
T Consensus 169 ~~g-gs~l~~~~~------~~~~~~~~i~~~a~~~ 196 (201)
T PRK06015 169 CVG-GSWVAPKEL------VAAGDWAGITKLAAEA 196 (201)
T ss_pred EEE-chhhCCchh------hhcccHHHHHHHHHHH
Confidence 776 455666432 4567777766655444
No 175
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=92.06 E-value=0.62 Score=38.55 Aligned_cols=85 Identities=12% Similarity=0.247 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
++++.+++..++||+ ...|+-.|.+- +..+.++|||++++..-.+...+ ++...+.|...... ||.|
T Consensus 187 elLkei~~~~~iPVV~fAiGGI~TPed---Aa~~melGAdGVaVGSaI~ks~d--P~~~akafv~ai~~-------~~~~ 254 (287)
T TIGR00343 187 ELLLEVLKLGKLPVVNFAAGGVATPAD---AALMMQLGADGVFVGSGIFKSSN--PEKLAKAIVEATTH-------YDNP 254 (287)
T ss_pred HHHHHHHHhCCCCEEEeccCCCCCHHH---HHHHHHcCCCEEEEhHHhhcCCC--HHHHHHHHHHHHHH-------cCCH
Confidence 455666655589998 46666644333 33444689999999988876655 88877777766554 7754
Q ss_pred CCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711 93 FVTNIDISVDTLVKLAH-H-ENIRGVKDT 119 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~-~-p~i~giK~s 119 (198)
+.+.+.++ + ...+|+-.+
T Consensus 255 ---------~~~~e~s~~~~~~m~g~~~~ 274 (287)
T TIGR00343 255 ---------EKLAEVSKDLGEAMKGISIS 274 (287)
T ss_pred ---------HHHHHHHccccccCCCCccc
Confidence 46666663 4 356666554
No 176
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=92.02 E-value=2 Score=35.66 Aligned_cols=98 Identities=9% Similarity=0.092 Sum_probs=62.7
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCC------------CcHHHHHHHHHHHHhcCCCEEEEcCCC---Cc
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYC------------ESTRATIDLTQKAAKAGANAALILCPY---YF 62 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~------------~~~~~~i~~a~~a~~~Gad~v~~~~P~---y~ 62 (198)
+..|+.+|-.+..+.+++.+ +++|= -.+++ ++.+++. +++++.|+|++.+.--. .+
T Consensus 108 gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~---~Fv~~TgvD~LAvaiGt~HG~Y 184 (285)
T PRK07709 108 ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECK---HLVEATGIDCLAPALGSVHGPY 184 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHH---HHHHHhCCCEEEEeecccccCc
Confidence 46789999999999999998 66652 22322 2334443 44556799988876311 11
Q ss_pred CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 63 QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 63 ~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
+.. +.==++-.++|.+++++|++++= |..++.+.+.+..++.
T Consensus 185 ~~~--p~L~~~~L~~I~~~~~iPLVLHG-----gSG~~~e~~~~ai~~G 226 (285)
T PRK07709 185 KGE--PNLGFAEMEQVRDFTGVPLVLHG-----GTGIPTADIEKAISLG 226 (285)
T ss_pred CCC--CccCHHHHHHHHHHHCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence 111 22112455667888899999854 4558888998887654
No 177
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=91.99 E-value=1.2 Score=36.65 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-eCCCCcccccCHHHHHHH
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-NNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n~P~~tg~~l~~~~l~~L 107 (198)
.+++++.++..+++||+++++-.. +. +-.+.|.+++++|++=- --|...|..+=...+.-+
T Consensus 159 a~~~i~~A~a~e~AGA~~ivlE~v--------p~---~~a~~It~~l~iP~iGIGaG~~~dGQvlV~~D~lG~ 220 (263)
T TIGR00222 159 AKKLLEDALALEEAGAQLLVLECV--------PV---ELAAKITEALAIPVIGIGAGNVCDGQILVMHDALGI 220 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC--------cH---HHHHHHHHhCCCCEEeeccCCCCCceeeeHHhhcCC
Confidence 457889999999999999988533 21 44577888889998743 335555655544444444
No 178
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=91.95 E-value=14 Score=36.76 Aligned_cols=171 Identities=15% Similarity=0.089 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHh----c-CCeEEEe-CC---------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711 7 STEEEKLKIISTLRQE----T-KKTIIAG-TY---------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI 71 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~----~-~~pvi~g-v~---------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i 71 (198)
.+..|-+..+..+.+. . ++||++. +. +.+.++++.. .+..|++++-+-.- .+ ++.+
T Consensus 171 ~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~---l~~~~~~avGlNCs----~g--P~~m 241 (1178)
T TIGR02082 171 FDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTS---LEHAGIDMIGLNCA----LG--PDEM 241 (1178)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHH---HhcCCCCEEEeCCC----CC--HHHH
Confidence 3556777777777654 1 7899988 21 1223344433 34678887766421 12 8999
Q ss_pred HHHHHHHHccCCCCEEEEeCCCC----cccccCHHHHHHHH----cC--CCEEEEeeC-CHHHHHHHHhhc--CCCC---
Q psy9711 72 YEHFISVADNSPIPVIIYNNTFV----TNIDISVDTLVKLA----HH--ENIRGVKDT-DNIKLANMANQT--KDLN--- 135 (198)
Q Consensus 72 ~~y~~~i~~~~~~pi~lYn~P~~----tg~~l~~~~l~~L~----~~--p~i~giK~s-d~~~~~~~~~~~--~~~~--- 135 (198)
..+.+.+...++.|+++|-|-+. ..++.+|+.+.+.. +. -||+|=-.. ++.+++.+.+.. ..++
T Consensus 242 ~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~ggv~IIGGCCGTtPeHI~ala~~l~~~~p~~~~ 321 (1178)
T TIGR02082 242 RPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEGGLNIVGGCCGTTPDHIRAIAEAVKNIKPRQRP 321 (1178)
T ss_pred HHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhhcCCCCCCC
Confidence 99999999999999999976322 24567787765554 32 589998888 888887665321 1121
Q ss_pred ----eEEEecChhhHHHHhhcCCC-eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 136 ----FSVFAGSAGYLLSGLLVGCA-GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 136 ----~~v~~G~d~~~~~~l~~G~~-G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
..+.+|.... ..+.+ ..+...--+.|--...+.++++++|++.|.+.-.+.
T Consensus 322 ~~~~~~~~s~~~~~-----~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~q 377 (1178)
T TIGR02082 322 VLYEPSRLSGLEAI-----TIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQ 377 (1178)
T ss_pred CcccceeecCceEE-----eecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHH
Confidence 1133333322 12211 122111233444457889999999999988765443
No 179
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=91.92 E-value=1.9 Score=35.74 Aligned_cols=101 Identities=6% Similarity=0.133 Sum_probs=63.9
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES-----------TRATIDLTQKAAKAGANAALILCPY---YFQ 63 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~ 63 (198)
+..|+.+|-.++.+.+++.+ ++.| +-.+++.. ..+.-+-.+++++.|+|.+-+.--. .++
T Consensus 103 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk 182 (282)
T TIGR01858 103 GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYK 182 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcC
Confidence 46789999999999999998 6665 22232110 0111233345667899988887422 122
Q ss_pred CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
.. +.==++-.++|.+.+++|++++= |..++.+.+.+..++.
T Consensus 183 ~~--p~Ldf~~L~~I~~~~~iPLVlHG-----gSG~~~e~~~~ai~~G 223 (282)
T TIGR01858 183 KT--PKLDFDRLAEIREVVDVPLVLHG-----ASDVPDEDVRRTIELG 223 (282)
T ss_pred CC--CccCHHHHHHHHHHhCCCeEEec-----CCCCCHHHHHHHHHcC
Confidence 11 22223566777778899999964 4457889998887654
No 180
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=91.91 E-value=1.8 Score=33.55 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=49.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD 102 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~ 102 (198)
+.+++.|+. +. +.++.|.+.|+|.+.+- | .+ .. ..++++.+.... ++|++. +| .++++
T Consensus 97 ~~~~i~gv~--t~----~e~~~A~~~Gad~i~~~-p----~~--~~-g~~~~~~l~~~~~~~p~~a------~G-GI~~~ 155 (190)
T cd00452 97 GIPLLPGVA--TP----TEIMQALELGADIVKLF-P----AE--AV-GPAYIKALKGPFPQVRFMP------TG-GVSLD 155 (190)
T ss_pred CCcEECCcC--CH----HHHHHHHHCCCCEEEEc-C----Cc--cc-CHHHHHHHHhhCCCCeEEE------eC-CCCHH
Confidence 788998888 33 44666778999999973 2 11 22 556888887666 477765 33 34788
Q ss_pred HHHHHHcCCCEEEEeeC
Q psy9711 103 TLVKLAHHENIRGVKDT 119 (198)
Q Consensus 103 ~l~~L~~~p~i~giK~s 119 (198)
-+.++.+.+ +.++=-+
T Consensus 156 n~~~~~~~G-~~~v~v~ 171 (190)
T cd00452 156 NAAEWLAAG-VVAVGGG 171 (190)
T ss_pred HHHHHHHCC-CEEEEEc
Confidence 888888765 4444333
No 181
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=91.89 E-value=1.5 Score=35.05 Aligned_cols=75 Identities=16% Similarity=0.099 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHH---------HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRA---------TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~---------~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
++..+.++.+++.+ ++|+|+= +-....+ ....+|.+.++|+|.+=...|.. ... ..+-.+-+++
T Consensus 108 ~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~--t~~~~~~~~~ 183 (236)
T PF01791_consen 108 DEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP-VGA--TPEDVELMRK 183 (236)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccc--cHHHHHHHHH
Confidence 44455666666666 7888877 4334444 57777888899999999998855 444 6666777888
Q ss_pred HHccCCCC----EEE
Q psy9711 78 VADNSPIP----VII 88 (198)
Q Consensus 78 i~~~~~~p----i~l 88 (198)
+.+.++.| |.+
T Consensus 184 ~~~~~~~p~~~~Vk~ 198 (236)
T PF01791_consen 184 AVEAAPVPGKVGVKA 198 (236)
T ss_dssp HHHTHSSTTTSEEEE
T ss_pred HHHhcCCCcceEEEE
Confidence 88888888 666
No 182
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.87 E-value=1.2 Score=36.22 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.++++.+++..++|||++.|=.+.++ +..+.++|+|+|++..-..-..+ +..+.+.|+.-.+
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tped----a~~AmelGAdgVlV~SAIt~a~d--P~~ma~af~~Av~ 225 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAIAKAKD--PVAMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHH----HHHHHHcCCCEEEEChHhcCCCC--HHHHHHHHHHHHH
Confidence 34555565555899999876655554 45667799999999988875455 8999999987665
No 183
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.85 E-value=3.3 Score=34.96 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhcC-----CeEEEeCCCCc-HHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 8 TEEEKLKIISTLRQETK-----KTIIAGTYCES-TRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~-----~pvi~gv~~~~-~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
..+.-.++++.+++..+ +||++=++... .++..+.++.++++|+|++.+....
T Consensus 181 ~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 181 GKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 44566678888887763 99999887432 3478899999999999999988654
No 184
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.84 E-value=6.2 Score=32.30 Aligned_cols=140 Identities=15% Similarity=0.148 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcH-H-HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCEST-R-ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~-~-~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+|.++-.++++.+.+.. ++|+++=...+.. + -.=+..+.++++|+|++++. ... .++..+|.+.. +..+
T Consensus 71 ~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-----DLp--~ee~~~~~~~~-~~~g 142 (258)
T PRK13111 71 VTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP-----DLP--PEEAEELRAAA-KKHG 142 (258)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC-----CCC--HHHHHHHHHHH-HHcC
Confidence 35566677777777444 7886544443322 1 22346788889999999993 222 66776666555 5678
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEE---------EeeC---CHHHHHHHHhhcCCCCeEEEecChh----hH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRG---------VKDT---DNIKLANMANQTKDLNFSVFAGSAG----YL 146 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~g---------iK~s---d~~~~~~~~~~~~~~~~~v~~G~d~----~~ 146 (198)
+..+..=.|. .+.+.+.++++ -+.++. .+.. +...+.+.+++.. +..++.|.+- ..
T Consensus 143 l~~I~lvap~-----t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v 215 (258)
T PRK13111 143 LDLIFLVAPT-----TTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQA 215 (258)
T ss_pred CcEEEEeCCC-----CCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHH
Confidence 8888766664 35677777774 344443 3222 2333333333333 4455555432 33
Q ss_pred HHHhhcCCCeEEeccc
Q psy9711 147 LSGLLVGCAGGINALS 162 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~ 162 (198)
...+ .++||++.|++
T Consensus 216 ~~~~-~~ADGviVGSa 230 (258)
T PRK13111 216 AAIA-AVADGVIVGSA 230 (258)
T ss_pred HHHH-HhCCEEEEcHH
Confidence 3333 45999999985
No 185
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=91.84 E-value=3.6 Score=35.47 Aligned_cols=115 Identities=11% Similarity=0.067 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeCCC--------CcHHHHHHHHHHHHhcC-CCEEEEcCCCCcCCC-CC-H-H
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGTYC--------ESTRATIDLTQKAAKAG-ANAALILCPYYFQKK-MT-E-D 69 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv~~--------~~~~~~i~~a~~a~~~G-ad~v~~~~P~y~~~~-~~-~-~ 69 (198)
|.|.|.++...+++++ ..||.+=++. .+.++++++++..++.| +|.+-++.+.+.... .. . .
T Consensus 194 SlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~ 273 (363)
T COG1902 194 SLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGP 273 (363)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCcccccc
Confidence 4567777666666555 4566654443 34679999999999999 799999998876322 11 1 1
Q ss_pred HHH-HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711 70 LIY-EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 70 ~i~-~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~ 128 (198)
+.. .+-+.+...+.+|++. +|.--+++...++.+. -.+||+=-. |+....++.
T Consensus 274 ~~~~~~a~~i~~~~~~pvi~------~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~ 332 (363)
T COG1902 274 GYQVEFAARIKKAVRIPVIA------VGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAA 332 (363)
T ss_pred chhHHHHHHHHHhcCCCEEE------eCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHH
Confidence 222 2233455667899997 5556688999988865 456666555 777776665
No 186
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=91.83 E-value=3.4 Score=35.09 Aligned_cols=117 Identities=11% Similarity=0.018 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+.+.+ +.++.+=. ++.+.+++++.++..++.|++. +--|.. .+-.+-++.|.+++++||
T Consensus 173 ~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~--iEqP~~-------~~~~~~~~~l~~~~~ipi 243 (357)
T cd03316 173 REDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFW--FEEPVP-------PDDLEGLARLRQATSVPI 243 (357)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCe--EcCCCC-------ccCHHHHHHHHHhCCCCE
Confidence 33455666666665 56776644 4456788888888887776543 334432 112344566777778887
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.=. ...+++.+.++.+ .-.++-+|-+ .+.+..++.+....-++.+..|
T Consensus 244 ~~dE------~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~ 297 (357)
T cd03316 244 AAGE------NLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPH 297 (357)
T ss_pred Eecc------ccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEecc
Confidence 7622 2346777777774 4577777776 3444444432112234555544
No 187
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=91.78 E-value=3.1 Score=34.25 Aligned_cols=89 Identities=9% Similarity=-0.075 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..+.++.+.+.. .+.+ .+..++.+...+.++.|++.|....... ...-... +++.+.+..+.+.+. +.-.
T Consensus 93 ~~~di~~~~~~g~~~iri--~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~~-Ga~~-- 165 (275)
T cd07937 93 VELFVEKAAKNGIDIFRI--FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVH--TLEYYVKLAKELEDM-GADS-- 165 (275)
T ss_pred HHHHHHHHHHcCCCEEEE--eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCC--CHHHHHHHHHHHHHc-CCCE--
Confidence 444566665553 2333 3344457788888888888885432211 1111122 377777777777653 3222
Q ss_pred EeCCCCcccccCHHHHHHHH
Q psy9711 89 YNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~ 108 (198)
...+...|. ++|+.+.++.
T Consensus 166 i~l~DT~G~-~~P~~v~~lv 184 (275)
T cd07937 166 ICIKDMAGL-LTPYAAYELV 184 (275)
T ss_pred EEEcCCCCC-CCHHHHHHHH
Confidence 233444554 4455444443
No 188
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=91.73 E-value=2.7 Score=38.04 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCeEEEeCC------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET---KKTIIAGTY------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
...|.+|-.+.++.+++.+ +..|..+.- ..+.+..++.++.+.++|++.+.+. -.....+ |.++.+.+
T Consensus 117 l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~-DTvG~~~--P~~v~~li 193 (524)
T PRK12344 117 LRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLC-DTNGGTL--PHEVAEIV 193 (524)
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEc-cCCCCcC--HHHHHHHH
Confidence 3467788888888887777 566655433 2346778999999999999987754 3334344 99999999
Q ss_pred HHHHccCCCCEEEEe
Q psy9711 76 ISVADNSPIPVIIYN 90 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn 90 (198)
+.+.+..++||-+|-
T Consensus 194 ~~l~~~~~v~i~~H~ 208 (524)
T PRK12344 194 AEVRAAPGVPLGIHA 208 (524)
T ss_pred HHHHHhcCCeEEEEE
Confidence 999998888888763
No 189
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=91.67 E-value=3.8 Score=34.07 Aligned_cols=155 Identities=13% Similarity=0.072 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEE----cCCC---Cc-C---CCCCHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALI----LCPY---YF-Q---KKMTEDLIY 72 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~----~~P~---y~-~---~~~~~~~i~ 72 (198)
.+|.+|..+.++.+...+.+||++-. | .+..+..+.++...++|+.++.+ .|.. +. + .-.+.++..
T Consensus 60 ~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~ 138 (285)
T TIGR02320 60 EASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFC 138 (285)
T ss_pred cCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHH
Confidence 68999999999988877799999853 4 58888899999999999999999 2221 10 0 112488888
Q ss_pred HHHHHHHcc-CC--CCEEEEeCCCCcccccCHHHHHHHH---cC-CCEEEEee-C-CHHHHHHHHhhcCC---C-CeEEE
Q psy9711 73 EHFISVADN-SP--IPVIIYNNTFVTNIDISVDTLVKLA---HH-ENIRGVKD-T-DNIKLANMANQTKD---L-NFSVF 139 (198)
Q Consensus 73 ~y~~~i~~~-~~--~pi~lYn~P~~tg~~l~~~~l~~L~---~~-p~i~giK~-s-d~~~~~~~~~~~~~---~-~~~v~ 139 (198)
+-.+...++ .+ ++|+-=-.-...+..+ .+.+.|.. +- -..+-+=. . +...+.++.++... + .+.+.
T Consensus 139 ~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~-~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 139 GKIRAGKDAQTTEDFMIIARVESLILGKGM-EDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred HHHHHHHHhccCCCeEEEEecccccccCCH-HHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 888888776 34 4444321111111122 35566554 22 24444432 2 55555555432111 1 33222
Q ss_pred ecC-hh-hHHHHhhcCCCeEEeccc
Q psy9711 140 AGS-AG-YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 140 ~G~-d~-~~~~~l~~G~~G~is~~~ 162 (198)
.+. .. .+-..-.+|.+=++.+..
T Consensus 218 ~~~~~~~~~~eL~~lG~~~v~~~~~ 242 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAGISVVIYANH 242 (285)
T ss_pred cCCCCCCCHHHHHHcCCCEEEEhHH
Confidence 321 11 233445789887665544
No 190
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=91.63 E-value=5.7 Score=34.14 Aligned_cols=111 Identities=11% Similarity=0.027 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHhc-----CCeEEEeCC----------CCcHHH-HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH
Q psy9711 8 TEEEKLKIISTLRQET-----KKTIIAGTY----------CESTRA-TIDLTQKAAKAGANAALILCPYYFQKKMTEDLI 71 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-----~~pvi~gv~----------~~~~~~-~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i 71 (198)
|.|-|.+++..+++++ .-.|.+=++ +.+.+| +++.++..++.|+|.+-+..|.+... ..-.
T Consensus 204 slENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~---~~~~ 280 (362)
T PRK10605 204 SVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG---EPYS 280 (362)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC---cccc
Confidence 5677887776666665 112332221 246677 79999999999999999987644311 1111
Q ss_pred HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711 72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~ 128 (198)
..+-+.|-+.+++||+. +|. ++++...++.+- -.+|++=-. |+....++.
T Consensus 281 ~~~~~~ik~~~~~pv~~------~G~-~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~ 335 (362)
T PRK10605 281 DAFREKVRARFHGVIIG------AGA-YTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQ 335 (362)
T ss_pred HHHHHHHHHHCCCCEEE------eCC-CCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHh
Confidence 23446666677889886 343 478988888854 456666554 777766665
No 191
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.44 E-value=2.3 Score=35.29 Aligned_cols=98 Identities=4% Similarity=0.085 Sum_probs=62.6
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCC--------------CcHHHHHHHHHHHHhcCCCEEEEcCCC---
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYC--------------ESTRATIDLTQKAAKAGANAALILCPY--- 60 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~--------------~~~~~~i~~a~~a~~~Gad~v~~~~P~--- 60 (198)
+..|+.+|-.+..+.+++.+ ++.|= -.+++ ++.+++. +++++.|+|++.+.--.
T Consensus 105 gS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~---~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK09195 105 GSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAR---EFVEATGIDSLAVAIGTAHG 181 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHH---HHHHHHCcCEEeeccCcccc
Confidence 46799999999999999998 55552 22321 1233333 44457799988887422
Q ss_pred CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 61 YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 61 y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
.++.. +.==++-.++|.+.+++|++++= |..++.+.+++..+..
T Consensus 182 ~y~~~--p~Ld~~~L~~I~~~~~vPLVLHG-----gSG~~~e~~~~ai~~G 225 (284)
T PRK09195 182 MYKGE--PKLDFDRLENIRQWVNIPLVLHG-----ASGLPTKDIQQTIKLG 225 (284)
T ss_pred ccCCC--CcCCHHHHHHHHHHhCCCeEEec-----CCCCCHHHHHHHHHcC
Confidence 12111 22123456777778899999964 4457788888887543
No 192
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=91.44 E-value=3.2 Score=33.35 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=40.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
|+...-+++.-.++++.+.+ +++||.+=+....+.+++++++.++++|+|++-+.
T Consensus 118 G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~ 172 (233)
T cd02911 118 GEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVD 172 (233)
T ss_pred chHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEEC
Confidence 44555567777788888876 48888885443222788999999999999986553
No 193
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=91.42 E-value=8.7 Score=33.17 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.6
Q ss_pred CCeEEEeCCCCc-HHHHHHHHHHHHhcCCCEEEEc
Q psy9711 24 KKTIIAGTYCES-TRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 24 ~~pvi~gv~~~~-~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
+.|.+.+..-.. -+-+.++.++|+++|+.++++.
T Consensus 132 ~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlT 166 (367)
T TIGR02708 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLT 166 (367)
T ss_pred CCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 446677765533 3445889999999999999996
No 194
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=91.42 E-value=0.65 Score=39.03 Aligned_cols=168 Identities=18% Similarity=0.122 Sum_probs=91.7
Q ss_pred cCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
......+||......+++.+ ++-..+.+.+.+.++.+++++.+++.|++++|+.+-.+ ..+ .....++
T Consensus 56 q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~NiT~~~~~em~~ra~~a~~~G~~~vmv~~~~~-G~~-----~~~~l~~ 129 (309)
T PF00016_consen 56 QPFCPFEERVPACMEAVDRAEEETGEKKLYAANITADTPDEMIERAEYAKEAGANAVMVNVLTA-GFS-----ALQSLAE 129 (309)
T ss_dssp BTTBEHHHHHHHHHHHHHHHHHHHSS--EEEEEE-SSSHHHHHHHHHHHHHHTGSEEEEEHHHH-CHH-----HHHHHHH
T ss_pred cccccHhHhHHhhhhhhhccccccceecceecccccccHHHHHHhhhhhhhhccchhhcccccc-ccc-----ccchhhh
Confidence 44566789988777777766 33346678777799999999999999999999963322 111 2233444
Q ss_pred HHccCCCCEEEEeCCCCcc-------cccCHHHHHHHHc---CCCEE----EEeeC-CHH---HHHHHHhh---------
Q psy9711 78 VADNSPIPVIIYNNTFVTN-------IDISVDTLVKLAH---HENIR----GVKDT-DNI---KLANMANQ--------- 130 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L~~---~p~i~----giK~s-d~~---~~~~~~~~--------- 130 (198)
.++...+||..+-. .+| .-++..++.+|.+ .+.|. +=|.+ +.. .+.+....
T Consensus 130 ~~~~~~~~ih~H~A--~~ga~~r~~~~Gis~~vl~kl~RLaGaD~vh~~t~~Gk~~g~~~~~~~~~~~~~~~~~~~d~~~ 207 (309)
T PF00016_consen 130 DARDNGLPIHAHRA--GHGAFTRSPDHGISFRVLGKLMRLAGADHVHFGTPYGKFEGDRSEVQGFADECRESMLEADAAR 207 (309)
T ss_dssp HHHHHTSEEEEETT--THHHHHSSSSSEEHHHHHHHHHHHHT-SEEEEE-SSSSBTTHHHHHHHHHHHHHHSEEHHBGGG
T ss_pred hhcccceeeeeccc--cchhhcccccCccceeeeccceecceeeeeccCccccccccccccccchhhhcccchhcccccc
Confidence 44444555544322 111 2234444554443 22221 23444 333 12111100
Q ss_pred ---------cCCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcC
Q psy9711 131 ---------TKDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAG 179 (198)
Q Consensus 131 ---------~~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~g 179 (198)
...+-|.|.+|.-. .+.+.+ ..|.|=++...+.++ | +.+++-|+++.+|
T Consensus 208 g~~~~q~~~~~k~~~Pv~SgG~~~g~vp~~~~~~G~Dvil~aGGGi~gHP~G~~AGa~A~RqA~eA~~~g 277 (309)
T PF00016_consen 208 GPFFDQDWGGMKPVFPVPSGGMHPGQVPELYRDLGTDVILQAGGGIHGHPDGPAAGARAFRQAWEAAMAG 277 (309)
T ss_dssp TBHSHEEBTTS---EEEEESSBSGGGHHHHHHHHTSSSEEEESHHHHTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecccccccccccccccCccchhhhHHHHHhhccCcccccCCcccccccCCCCCccchHHHHHHHhhc
Confidence 02356888887553 233332 468776655555443 2 6678889999888
No 195
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=91.37 E-value=2.5 Score=35.12 Aligned_cols=101 Identities=9% Similarity=0.163 Sum_probs=63.2
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCES-----------TRATIDLTQKAAKAGANAALILCPY---YFQ 63 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~ 63 (198)
+..|+.+|-.+..+.+++.+ ++.| +-.+++.. ..+.-+-.+++++.|+|++.+.--. .++
T Consensus 105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK12737 105 GSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYK 184 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccC
Confidence 46789999999999999998 5555 22232111 0111233344556899988887422 122
Q ss_pred CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
.. +.==++-.++|.+.+++|++++= |..++.+.+++..+..
T Consensus 185 ~~--p~Ld~~~L~~I~~~~~iPLVlHG-----gSG~~~e~~~kai~~G 225 (284)
T PRK12737 185 GE--PKLDFERLAEIREKVSIPLVLHG-----ASGVPDEDVKKAISLG 225 (284)
T ss_pred CC--CcCCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHCC
Confidence 11 22123457888888899999964 4457888988887654
No 196
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=91.37 E-value=1.9 Score=36.46 Aligned_cols=48 Identities=15% Similarity=0.274 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y 61 (198)
.++++.+++..++||++=.+. +..+..+.++.++++|+|++.+..-.+
T Consensus 152 ~eiv~~v~~~~~iPv~vKl~p-~~~~~~~~a~~l~~~Gadgi~~~nt~~ 199 (325)
T cd04739 152 LDILRAVKSAVTIPVAVKLSP-FFSALAHMAKQLDAAGADGLVLFNRFY 199 (325)
T ss_pred HHHHHHHHhccCCCEEEEcCC-CccCHHHHHHHHHHcCCCeEEEEcCcC
Confidence 467777766668999998764 455889999999999999999987653
No 197
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.32 E-value=6.9 Score=31.81 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=93.5
Q ss_pred CCeEEEeC-CCCcHHHHHHHHHHHHhcCC-CEE---EEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711 24 KKTIIAGT-YCESTRATIDLTQKAAKAGA-NAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 98 (198)
Q Consensus 24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~Ga-d~v---~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~ 98 (198)
++.++..+ |..+-+|+++.++.|.+++- +-+ ++..|.|..|. ..+.++--+.+.+ =+.-++-|=.+
T Consensus 62 ~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd--~~~tv~aa~~L~~-~Gf~vlpyc~d------ 132 (248)
T cd04728 62 GYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPD--PIETLKAAEILVK-EGFTVLPYCTD------ 132 (248)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccC--HHHHHHHHHHHHH-CCCEEEEEeCC------
Confidence 55555544 66678999999999999853 433 23358888887 9999999888874 35666655544
Q ss_pred cCHHHHHHHHcC------C--CEEEEeeC--CHHHHHHHHhhcCCCCeEEEecC----hhhHHHHhhcCCCeEEeccccc
Q psy9711 99 ISVDTLVKLAHH------E--NIRGVKDT--DNIKLANMANQTKDLNFSVFAGS----AGYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 99 l~~~~l~~L~~~------p--~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~----d~~~~~~l~~G~~G~is~~~n~ 164 (198)
++.+-++|.+. | ..+|-..+ ++..+..+. +. .++.|+.+. .+....++.+|++|++.+++-.
T Consensus 133 -d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~-e~--~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 133 -DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIII-ER--ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred -CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH-Hh--CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhc
Confidence 35566666643 3 44443333 666666555 32 345555432 3466788999999999988865
Q ss_pred c---hHHH-HHHHHHHHcCCH
Q psy9711 165 L---GGPI-CELYDLAKAGKW 181 (198)
Q Consensus 165 ~---P~~~-~~l~~~~~~gd~ 181 (198)
- |..+ .++..++.+|+.
T Consensus 209 ~a~dP~~ma~af~~Av~aGr~ 229 (248)
T cd04728 209 KAKDPVAMARAFKLAVEAGRL 229 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 5 6554 444455566643
No 198
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=91.27 E-value=8.4 Score=32.98 Aligned_cols=92 Identities=12% Similarity=0.138 Sum_probs=63.9
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCCH------------------HHHHHHHHHH--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMTE------------------DLIYEHFISV-- 78 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~~------------------~~i~~y~~~i-- 78 (198)
|..||+| ++-.+.+.+++.|+..+++|.. .+.++--|++||- |. ++=+.+.+.+
T Consensus 53 rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPR-Ts~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~ 131 (349)
T PRK09261 53 RLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPR-TTVGWKGLINDPDLDGSFDINDGLRIARKLLL 131 (349)
T ss_pred CeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCC-CCCCCcCCCcCcCccccccHHHHHHHHHHHHH
Confidence 7788998 7778899999999999999873 4556666677753 22 4556677777
Q ss_pred -HccCCCCEEEE-----------------eCCCCcccccCHHHHHHHH-cCCCEEEEeeC
Q psy9711 79 -ADNSPIPVIIY-----------------NNTFVTNIDISVDTLVKLA-HHENIRGVKDT 119 (198)
Q Consensus 79 -~~~~~~pi~lY-----------------n~P~~tg~~l~~~~l~~L~-~~p~i~giK~s 119 (198)
.+..++|+.-= .++.+ +..-....+++ ..+--||+|.+
T Consensus 132 ~~~e~GlpvatE~ld~~~~~y~~dlvs~~~IGAR---t~esq~hr~~asg~~~PVg~Kng 188 (349)
T PRK09261 132 DINELGLPAATEFLDPITPQYIADLISWGAIGAR---TTESQVHRELASGLSCPVGFKNG 188 (349)
T ss_pred HHHHhCCCeEEEecccccHHHHHhhcceeeeccc---hhcCHHHHHHhcCCCCeeEecCC
Confidence 46778998621 12222 22334556666 68899999999
No 199
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.18 E-value=6.7 Score=35.25 Aligned_cols=128 Identities=12% Similarity=0.123 Sum_probs=78.3
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHH
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV 105 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~ 105 (198)
+++|+.-....+.++.++...++|+|.+.+-+..-. .....+..+.|.+.. ++||+. |...+++...
T Consensus 230 L~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a~G~-----s~~~~~~i~~ik~~~~~~~v~a-------G~V~t~~~a~ 297 (495)
T PTZ00314 230 LLVGAAISTRPEDIERAAALIEAGVDVLVVDSSQGN-----SIYQIDMIKKLKSNYPHVDIIA-------GNVVTADQAK 297 (495)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC-----chHHHHHHHHHHhhCCCceEEE-------CCcCCHHHHH
Confidence 344443333456699999999999999988765311 333456677777665 577776 6678899988
Q ss_pred HHHcCCCEEEEeeC---------------CHHHH---HHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccc
Q psy9711 106 KLAHHENIRGVKDT---------------DNIKL---ANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSA 163 (198)
Q Consensus 106 ~L~~~p~i~giK~s---------------d~~~~---~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n 163 (198)
.+.+. .+-+||-+ ...++ .+..+.....++.++. |. ...+..++.+|+++++.|..-
T Consensus 298 ~~~~a-Gad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~ 376 (495)
T PTZ00314 298 NLIDA-GADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLL 376 (495)
T ss_pred HHHHc-CCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 88863 22234321 01222 2222111123466776 43 346788999999999988874
Q ss_pred cchH
Q psy9711 164 VLGG 167 (198)
Q Consensus 164 ~~P~ 167 (198)
.-++
T Consensus 377 a~~~ 380 (495)
T PTZ00314 377 AGTE 380 (495)
T ss_pred cccc
Confidence 4443
No 200
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.18 E-value=1.5 Score=35.57 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
+++.+++..++|||++.|=.+.++ +..+.++|+|+|++..-..-..+ +..+-+.|+.-.+
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tped----a~~AmelGAdgVlV~SAItka~d--P~~ma~af~~Av~ 225 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSD----AAQAMELGADAVLLNTAIAVAGD--PVAMARAFKLAVE 225 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHH----HHHHHHcCCCEEEEChHhhCCCC--HHHHHHHHHHHHH
Confidence 366666655899999876655554 45667799999999988765455 9999999987665
No 201
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=91.17 E-value=5.1 Score=36.26 Aligned_cols=99 Identities=16% Similarity=0.190 Sum_probs=68.7
Q ss_pred HHHHHHHHHhc-CC-eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEE
Q psy9711 13 LKIISTLRQET-KK-TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~-~~-pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lY 89 (198)
+++++.++... .+ -|+++.|=.+.+++.+++....+-|...+.. ||. +-++| +-.-.|+++.+ .||+++
T Consensus 111 krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~f------KPG-tIeqI-~svi~IAka~P~~pIilq 182 (717)
T COG4981 111 KRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAF------KPG-TIEQI-RSVIRIAKANPTFPIILQ 182 (717)
T ss_pred HHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEe------cCC-cHHHH-HHHHHHHhcCCCCceEEE
Confidence 45666666554 21 1455677788999999999888888766554 565 34444 45556777774 999999
Q ss_pred eCCCCcccccC--------HHHHHHHHcCCCEEEEeeC
Q psy9711 90 NNTFVTNIDIS--------VDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 90 n~P~~tg~~l~--------~~~l~~L~~~p~i~giK~s 119 (198)
..-++.|-.=| ..++.+|..++||+=+--+
T Consensus 183 ~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGg 220 (717)
T COG4981 183 WEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGG 220 (717)
T ss_pred EecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecC
Confidence 98877666433 3456677789999877766
No 202
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=91.09 E-value=2.7 Score=36.65 Aligned_cols=75 Identities=9% Similarity=0.008 Sum_probs=65.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
||.+.=+.+|-+++++.+.+.. ++.-|.+||+ ..+|.|.-.+.+.++|+|..++-.-.|... .+-+.+|-++|+-
T Consensus 198 ~e~HaApldE~~~Va~~Akk~gkGveaI~~vGD-GyddLI~G~~a~id~~vDvfVvEGgPFN~a---~dRl~aFakaVa~ 273 (505)
T PF10113_consen 198 GEEHAAPLDEMEEVAELAKKYGKGVEAIMHVGD-GYDDLITGLKACIDMGVDVFVVEGGPFNRA---KDRLKAFAKAVAA 273 (505)
T ss_pred CcccCCCHHHHHHHHHHHHHhCCCceEEEEecC-ChHHHHHHHHHHHhcCCcEEEEeCCCcccc---hhHHHHHHHHHHH
Confidence 6788889999999999999998 8999999997 799999999999999999999986666653 6778888888774
No 203
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=91.06 E-value=5.1 Score=30.51 Aligned_cols=82 Identities=13% Similarity=0.074 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCC---CCcCCC--CCHHHHHHHHHHHHccC---CCCEEEEeCCCCccc-ccCHHHHHH
Q psy9711 36 TRATIDLTQKAAKAGANAALILCP---YYFQKK--MTEDLIYEHFISVADNS---PIPVIIYNNTFVTNI-DISVDTLVK 106 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P---~y~~~~--~~~~~i~~y~~~i~~~~---~~pi~lYn~P~~tg~-~l~~~~l~~ 106 (198)
.+...+.++.|+.+|+..+.+.++ .....+ ...+.+.+.++.+++.. ++-+.+.|.|..... ..+.+.+.+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~ 149 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYR 149 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHH
Confidence 566777888899999999999877 333322 01345666667776655 899999999876542 334577777
Q ss_pred HH-c--CCCEEEEee
Q psy9711 107 LA-H--HENIRGVKD 118 (198)
Q Consensus 107 L~-~--~p~i~giK~ 118 (198)
+. + .|| +|+-.
T Consensus 150 ~l~~~~~~~-~~i~~ 163 (213)
T PF01261_consen 150 LLEEVDSPN-VGICF 163 (213)
T ss_dssp HHHHHTTTT-EEEEE
T ss_pred HHhhcCCCc-ceEEE
Confidence 77 3 467 44433
No 204
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=91.05 E-value=3.8 Score=33.73 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
+++.+=+..+.+.+.+++ +..++..-+..+.....+..+.....++|++++.++. .......++.+. ..
T Consensus 7 ~~~~~~~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~-------~~~~~~~l~~~~-~~ 78 (302)
T TIGR02634 7 DLRLERWQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQN-------GQVLSNAVQEAK-DE 78 (302)
T ss_pred ccchhhHHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhHHHHHHHHHH-HC
Confidence 455566666777666666 6777776666677778889999999999999998643 222334555543 46
Q ss_pred CCCEEEEeCCC
Q psy9711 83 PIPVIIYNNTF 93 (198)
Q Consensus 83 ~~pi~lYn~P~ 93 (198)
++|+++.|.+.
T Consensus 79 ~iPvV~~d~~~ 89 (302)
T TIGR02634 79 GIKVVAYDRLI 89 (302)
T ss_pred CCeEEEecCcC
Confidence 89999998753
No 205
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=91.03 E-value=5.4 Score=34.11 Aligned_cols=92 Identities=10% Similarity=0.103 Sum_probs=61.7
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCCH------------------HHHHHHHHHH--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMTE------------------DLIYEHFISV-- 78 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~~------------------~~i~~y~~~i-- 78 (198)
|..||+| ++-.+.+.+++.|+..+++|.. .+.++--|++||- |. ++=+.+-|.+
T Consensus 54 rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPR-T~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~ 132 (353)
T PRK12755 54 RLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPR-TTVGWKGLINDPHLDGSFDIEEGLRIARKLLL 132 (353)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCC-CCcCCcCCCCCccccccccHHHHHHHHHHHHH
Confidence 7788888 7777899999999999999864 4556666666663 21 3334454444
Q ss_pred -HccCCCCEEEE-----------------eCCCCcccccCHHHHHHHH-cCCCEEEEeeC
Q psy9711 79 -ADNSPIPVIIY-----------------NNTFVTNIDISVDTLVKLA-HHENIRGVKDT 119 (198)
Q Consensus 79 -~~~~~~pi~lY-----------------n~P~~tg~~l~~~~l~~L~-~~p~i~giK~s 119 (198)
....++|+.-= -++.+ +..-....+++ ...--||+|.+
T Consensus 133 ~~~e~Glp~atE~ld~~~~~y~~Dlvs~~aIGAR---t~esq~hre~aSgl~~PVgfKng 189 (353)
T PRK12755 133 DLVELGLPLATEALDPISPQYLGDLISWGAIGAR---TTESQTHREMASGLSMPVGFKNG 189 (353)
T ss_pred HHHHhCCCEEEEecCcccHHHHHhhhhheeeccc---hhcCHHHHHHhcCCCCeeEecCC
Confidence 55678998621 12222 22335566676 68899999999
No 206
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=90.96 E-value=0.74 Score=37.01 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 13 LKIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
...+++.++++++|||+ |+|..| .+-.+.++|+|+|++-...--.-+ +-.+-+-|+.-.++
T Consensus 171 ~~~l~iiie~a~VPviVDAGiG~pS------dAa~aMElG~DaVL~NTAiA~A~D--Pv~MA~Af~~Av~A 233 (262)
T COG2022 171 PYNLEIIIEEADVPVIVDAGIGTPS------DAAQAMELGADAVLLNTAIARAKD--PVAMARAFALAVEA 233 (262)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCChh------HHHHHHhcccceeehhhHhhccCC--hHHHHHHHHHHHHH
No 207
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=90.96 E-value=0.99 Score=37.97 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
..|.-.++++.+.+..++||++=++- +..+..+.++.+.+.|+|++.++.-....+. +-..+..|+.
T Consensus 145 ~~e~l~~l~~~vk~~~~~Pv~vKl~P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~------------id~~~~~~~~ 211 (310)
T COG0167 145 DPELLEKLLEAVKAATKVPVFVKLAP-NITDIDEIAKAAEEAGADGLIAINTTKSGMK------------IDLETKKPVL 211 (310)
T ss_pred CHHHHHHHHHHHHhcccCceEEEeCC-CHHHHHHHHHHHHHcCCcEEEEEeecccccc------------cccccccccc
Confidence 44566667777766669999999987 8999999999999999999999875543331 0001113332
Q ss_pred EEeCCCCcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEecccc
Q psy9711 88 IYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALSA 163 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~n 163 (198)
-.-.-+ +|-.-+..++ ...+.++. +..++++.|. .|-++ .....+.+|++-+--+++.
T Consensus 212 ~~~~GG-----LSG~~ikp~a------------l~~v~~l~-~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal 273 (310)
T COG0167 212 ANETGG-----LSGPPLKPIA------------LRVVAELY-KRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTAL 273 (310)
T ss_pred CcCCCC-----cCcccchHHH------------HHHHHHHH-HhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeee
Confidence 222222 3333333332 23333333 2334455554 23333 2456678888777666665
Q ss_pred cc--hHHHHHHH----HHHHcCCHHHHHHH
Q psy9711 164 VL--GGPICELY----DLAKAGKWEEAMKL 187 (198)
Q Consensus 164 ~~--P~~~~~l~----~~~~~gd~~~A~~l 187 (198)
+. |.++.+|. +.+++..++...++
T Consensus 274 ~~~Gp~i~~~I~~~l~~~l~~~g~~si~d~ 303 (310)
T COG0167 274 IYKGPGIVKEIIKGLARWLEEKGFESIQDI 303 (310)
T ss_pred eeeCchHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 43 44555444 44455545444433
No 208
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=90.88 E-value=1.5 Score=34.93 Aligned_cols=71 Identities=24% Similarity=0.236 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 115 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g 115 (198)
.+.++.++.+++.|+|.+.+..-.-.... +.--.++++++++.+++||+. .|---+++.+.++.+..++.|
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~--~g~~~~~~~~i~~~~~ipvia------~GGi~s~~di~~~l~~~gadg 223 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTM--KGYDLELIKTVSDAVSIPVIA------LGGAGSLDDLVEVALEAGASA 223 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCc--CCCCHHHHHHHHhhCCCCEEE------ECCCCCHHHHHHHHHHcCCCE
Confidence 45689999999999999999862211100 111267788898888999887 333347888888433234333
No 209
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=90.78 E-value=3.6 Score=38.91 Aligned_cols=98 Identities=9% Similarity=0.069 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHH-H
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDL-I 71 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~-i 71 (198)
|.+.|.+++..+++.+ +.||.+=++ +.+.++++++++.+++.|+|.+-+..+.+..... .... .
T Consensus 596 slenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~ 675 (765)
T PRK08255 596 SLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQ 675 (765)
T ss_pred CHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCcccc
Confidence 4567776666666555 456765444 3457899999999999999999998554332100 0001 1
Q ss_pred HHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 72 YEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 72 ~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
..+-+.|-+.+++||+. .|.--+++...++.+..
T Consensus 676 ~~~~~~ik~~~~~pv~~------~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 676 TPFADRIRNEAGIATIA------VGAISEADHVNSIIAAG 709 (765)
T ss_pred HHHHHHHHHHcCCEEEE------eCCCCCHHHHHHHHHcC
Confidence 23335555566888766 34445788888887543
No 210
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=90.77 E-value=1.3 Score=35.08 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
++..++++.+.+.|+|++++..-. . .+++.+.+..+.+-+.+++|++++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~--g--vt~~~~~~~v~~ik~~~~lPvilf 59 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSL--G--IVESNLDQTVKKIKKITNLPVILF 59 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcC--C--CCHHHHHHHHHHHHhhcCCCEEEE
Confidence 556667889999999999997441 1 248999999999988899999996
No 211
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=90.66 E-value=6.2 Score=31.99 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH--HHHHccCCC---C-
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF--ISVADNSPI---P- 85 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~--~~i~~~~~~---p- 85 (198)
..++++.+.+.+++||++|-|-.+.+++.++. ++|++.+++....+..|. --+++.+.| +.|.-+.+. +
T Consensus 62 n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~----~~Ga~~vivgt~~~~~p~-~~~~~~~~~~~~~iv~slD~~~g~~ 136 (254)
T TIGR00735 62 MIDVVERTAETVFIPLTVGGGIKSIEDVDKLL----RAGADKVSINTAAVKNPE-LIYELADRFGSQCIVVAIDAKRVYV 136 (254)
T ss_pred hHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH----HcCCCEEEEChhHhhChH-HHHHHHHHcCCCCEEEEEEeccCCC
Confidence 34566666666689999988877777766554 469999999877765432 123344444 122222221 1
Q ss_pred -------EEEEeCCCCcccccCHHHH-HHHHcC--CCEEE-------EeeC-CHHHHHHHHhhcCCCCeEEEec-Ch--h
Q psy9711 86 -------VIIYNNTFVTNIDISVDTL-VKLAHH--ENIRG-------VKDT-DNIKLANMANQTKDLNFSVFAG-SA--G 144 (198)
Q Consensus 86 -------i~lYn~P~~tg~~l~~~~l-~~L~~~--p~i~g-------iK~s-d~~~~~~~~~~~~~~~~~v~~G-~d--~ 144 (198)
|.++... .....++..+ .+|.+. ..|.- .... |+..+.++.+ ..+-.+ +.+| .. +
T Consensus 137 ~~~~~~~v~i~gw~--~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~-~~~ipv-ia~GGi~s~~ 212 (254)
T TIGR00735 137 NSYCWYEVYIYGGR--ESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSE-AVKIPV-IASGGAGKPE 212 (254)
T ss_pred CCCccEEEEEeCCc--ccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHH-hCCCCE-EEeCCCCCHH
Confidence 1112111 2223444333 444433 22221 1112 5566666553 332233 2333 22 2
Q ss_pred hHHHHhhcC-CCeEEecccccch
Q psy9711 145 YLLSGLLVG-CAGGINALSAVLG 166 (198)
Q Consensus 145 ~~~~~l~~G-~~G~is~~~n~~P 166 (198)
.+...+..| ++|++.+.+-...
T Consensus 213 di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 213 HFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHcCCcceeeEhHHHhCC
Confidence 455667777 9999988774443
No 212
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=90.66 E-value=8.2 Score=31.57 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=84.3
Q ss_pred CCeEEEeC-CCCcHHHHHHHHHHHHhcC-------CCEE---EEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 24 KKTIIAGT-YCESTRATIDLTQKAAKAG-------ANAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~G-------ad~v---~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
++.++-.+ |..+-+|+++.++.|.+++ -+-+ ++..|.|..|. +.+.++--+.+.+ -+--|+-|-+|
T Consensus 70 ~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD--~~etl~Aae~Lv~-eGF~VlPY~~~ 146 (267)
T CHL00162 70 KLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPD--PIGTLKAAEFLVK-KGFTVLPYINA 146 (267)
T ss_pred ccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCC--hHHHHHHHHHHHH-CCCEEeecCCC
Confidence 55555543 5667899999999999986 3333 33468888887 9999999999885 36777777765
Q ss_pred CCcccccCHHHHHHHHcCCC-E-------EEEeeC--CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEE
Q psy9711 93 FVTNIDISVDTLVKLAHHEN-I-------RGVKDT--DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGI 158 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~p~-i-------~giK~s--d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~i 158 (198)
. +-+-+||.+..- . +|---. |+..++.++ . .+++.|+. |. .+....++.+|+||+.
T Consensus 147 D-------~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~-e--~~~vpVivdAGIgt~sDa~~AmElGaDgVL 216 (267)
T CHL00162 147 D-------PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII-E--NAKIPVIIDAGIGTPSEASQAMELGASGVL 216 (267)
T ss_pred C-------HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH-H--cCCCcEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 3 566777776432 2 222222 556666555 2 24455554 33 2467788999999998
Q ss_pred ecccc
Q psy9711 159 NALSA 163 (198)
Q Consensus 159 s~~~n 163 (198)
..++-
T Consensus 217 ~nSaI 221 (267)
T CHL00162 217 LNTAV 221 (267)
T ss_pred eccee
Confidence 77663
No 213
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.64 E-value=10 Score=32.71 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCC----CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
...+.++++.+.++|+|.+.+..-. |...+.++..+.++. +..++||+. |.-.+.+...++.+.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i----~~~~IPVI~-------G~V~t~e~A~~~~~a- 208 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFI----GELDVPVIA-------GGVNDYTTALHLMRT- 208 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHH----HHCCCCEEE-------eCCCCHHHHHHHHHc-
Confidence 4588899999999999999986432 322221255444443 446899986 334677878777752
Q ss_pred CEEEEeeC-------------CHH---HHHHHHh------hcCC-CCeEEEe-c---ChhhHHHHhhcCCCeEEeccccc
Q psy9711 112 NIRGVKDT-------------DNI---KLANMAN------QTKD-LNFSVFA-G---SAGYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 112 ~i~giK~s-------------d~~---~~~~~~~------~~~~-~~~~v~~-G---~d~~~~~~l~~G~~G~is~~~n~ 164 (198)
.+.+|.-. ... .+.+... +..+ ..+.|+. | ....+..++.+|+++++.|..-.
T Consensus 209 GaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a 288 (369)
T TIGR01304 209 GAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLA 288 (369)
T ss_pred CCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHH
Confidence 33333311 011 1222210 1122 2355553 3 22457888999999999887644
Q ss_pred c
Q psy9711 165 L 165 (198)
Q Consensus 165 ~ 165 (198)
.
T Consensus 289 ~ 289 (369)
T TIGR01304 289 R 289 (369)
T ss_pred h
Confidence 3
No 214
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=90.56 E-value=5.7 Score=32.46 Aligned_cols=94 Identities=17% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCeEEEeCC-----CCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCccc
Q psy9711 24 KKTIIAGTY-----CESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI 97 (198)
Q Consensus 24 ~~pvi~gv~-----~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~ 97 (198)
++.|++.|. ...+++.-+.++.+ +..++|+++++-+....+. +-+.++ ++-+.+++||++ .+|
T Consensus 140 ~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~--~~~~l~---~vr~~~~~PVlv-----GSG- 208 (254)
T PF03437_consen 140 DVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPP--DPEKLK---RVREAVPVPVLV-----GSG- 208 (254)
T ss_pred CeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCC--CHHHHH---HHHhcCCCCEEE-----ecC-
Confidence 566776652 12222333445455 5678999999988876665 443333 344445599987 344
Q ss_pred ccCHHHHHHHHc--CCCEEE--EeeC-------CHHHHHHHHh
Q psy9711 98 DISVDTLVKLAH--HENIRG--VKDT-------DNIKLANMAN 129 (198)
Q Consensus 98 ~l~~~~l~~L~~--~p~i~g--iK~s-------d~~~~~~~~~ 129 (198)
++++-+.++.+ ..-||| +|.. |.++.+++++
T Consensus 209 -vt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 209 -VTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERVRRFME 250 (254)
T ss_pred -CCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHHHHHHH
Confidence 67888888875 345665 6754 6777777763
No 215
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=90.54 E-value=3.6 Score=32.26 Aligned_cols=146 Identities=19% Similarity=0.216 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
|+.++..++++...++. + +++|+|+--+ .++++.|.++||+.++. |.+ .+++.++-++ .++|
T Consensus 41 ~~t~~a~~~I~~l~~~~p~--~~vGAGTV~~---~e~a~~a~~aGA~FivS--P~~------~~~v~~~~~~----~~i~ 103 (196)
T PF01081_consen 41 LRTPNALEAIEALRKEFPD--LLVGAGTVLT---AEQAEAAIAAGAQFIVS--PGF------DPEVIEYARE----YGIP 103 (196)
T ss_dssp TTSTTHHHHHHHHHHHHTT--SEEEEES--S---HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHH----HTSE
T ss_pred cCCccHHHHHHHHHHHCCC--CeeEEEeccC---HHHHHHHHHcCCCEEEC--CCC------CHHHHHHHHH----cCCc
Confidence 44556677888777765 4 5667776544 45677888899997664 432 6667776553 3555
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----C-HHHHHHHHhhcCCCCeEEEe--cCh-hhHHHHhhcCCCe
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----D-NIKLANMANQTKDLNFSVFA--GSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d-~~~~~~~~~~~~~~~~~v~~--G~d-~~~~~~l~~G~~G 156 (198)
++ | | .++|..+.+-.+. ...-+|.= . +..+..+. . --+++.++. |-+ +.+...+.+|+.+
T Consensus 104 ~i----P---G-~~TptEi~~A~~~-G~~~vK~FPA~~~GG~~~ik~l~-~-p~p~~~~~ptGGV~~~N~~~~l~ag~~~ 172 (196)
T PF01081_consen 104 YI----P---G-VMTPTEIMQALEA-GADIVKLFPAGALGGPSYIKALR-G-PFPDLPFMPTGGVNPDNLAEYLKAGAVA 172 (196)
T ss_dssp EE----E---E-ESSHHHHHHHHHT-T-SEEEETTTTTTTHHHHHHHHH-T-TTTT-EEEEBSS--TTTHHHHHTSTTBS
T ss_pred cc----C---C-cCCHHHHHHHHHC-CCCEEEEecchhcCcHHHHHHHh-c-cCCCCeEEEcCCCCHHHHHHHHhCCCEE
Confidence 54 2 3 3556555544433 34566765 2 34444443 2 235666552 333 3677889999988
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHH
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKL 187 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l 187 (198)
+..| ++++|+.. ++++||++..++
T Consensus 173 vg~G-s~L~~~~~------i~~~~~~~I~~l 196 (196)
T PF01081_consen 173 VGGG-SWLFPKDL------IAAGDWDEITRL 196 (196)
T ss_dssp EEEE-SGGGSHHH------HHTT-HHHHHHH
T ss_pred EEEC-chhcCHHH------HhcCCHHHHhcC
Confidence 7655 45777542 457888876654
No 216
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.50 E-value=1.2 Score=36.55 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCeEEE-eC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 14 KIISTLRQETKKTIIA-GT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~-gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
+-.+.+++.+++||++ |= ...+.++.+++.+.+.++|+.++.+---.|.++. ++.+.+-...|.
T Consensus 192 e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~--p~~m~~Ai~~Iv 257 (265)
T COG1830 192 ESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED--PEAMVKAIQAIV 257 (265)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC--hHHHHHHHHHHh
Confidence 3455666666888755 44 3448899999999999999999999999999887 888777666664
No 217
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=90.39 E-value=3.4 Score=32.99 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=62.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC-CHHHHH-----
Q psy9711 1 YSNSFKSTEEEKLKIISTLRQET-KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKM-TEDLIY----- 72 (198)
Q Consensus 1 ~gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~-~~~~i~----- 72 (198)
|-.+..++.+|-.++.+.+++-. ++++-+-|-+ ...++.++++...+++|+|-+.--.-.-.+|.. .--+++
T Consensus 94 Y~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaap 173 (242)
T PF04481_consen 94 YAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAP 173 (242)
T ss_pred HhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhH
Confidence 34567789999999999999888 8888777744 457999999999999999988765433333320 122222
Q ss_pred --HHHHHHHccCCCCEEE
Q psy9711 73 --EHFISVADNSPIPVII 88 (198)
Q Consensus 73 --~y~~~i~~~~~~pi~l 88 (198)
..-..|.+++++||+-
T Consensus 174 TLAaay~ISr~v~iPVlc 191 (242)
T PF04481_consen 174 TLAAAYAISRAVSIPVLC 191 (242)
T ss_pred HHHHHHHHHhccCCceEe
Confidence 2335677778899875
No 218
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=90.39 E-value=14 Score=33.95 Aligned_cols=177 Identities=10% Similarity=0.141 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCeE------EEeCCCCcHHHHHH-HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKKTI------IAGTYCESTRATID-LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pv------i~gv~~~~~~~~i~-~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
.-++-||.+.++..+..+++-. ++|.... .++.++ ..+.|.+.|+|-+-+..+. + +-+.+....+.+
T Consensus 59 ~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd~l----n-d~~n~~~~i~~~ 132 (596)
T PRK14042 59 KEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFDAL----N-DARNLKVAIDAI 132 (596)
T ss_pred CCCHHHHHHHHHHhCCCCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcccC----c-chHHHHHHHHHH
Confidence 3477888888877765442222 3455543 345554 7888999999988886543 2 244455566665
Q ss_pred HccCCC---CEEEEeC-CCCcccccCHHHHHHHH----cC-CCEEEEeeC----CHHHHHHHHhh---cCCCCeEEEecC
Q psy9711 79 ADNSPI---PVIIYNN-TFVTNIDISVDTLVKLA----HH-ENIRGVKDT----DNIKLANMANQ---TKDLNFSVFAGS 142 (198)
Q Consensus 79 ~~~~~~---pi~lYn~-P~~tg~~l~~~~l~~L~----~~-p~i~giK~s----d~~~~~~~~~~---~~~~~~~v~~G~ 142 (198)
-+ .+. +.+-|-. | ..+++.+.+++ +. ...+.|||+ .+..+.++++. ..+-.+. +-++
T Consensus 133 k~-~G~~~~~~i~yt~sp-----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~-~H~H 205 (596)
T PRK14042 133 KS-HKKHAQGAICYTTSP-----VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVH-LHSH 205 (596)
T ss_pred HH-cCCEEEEEEEecCCC-----CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEE-EEeC
Confidence 54 442 3333432 3 34566555554 33 589999999 66666555532 2222233 3333
Q ss_pred hh------hHHHHhhcCCC---eEEeccc----ccchHHHHHHHHHH--HcC-CHHHHHHHHHHhhchh
Q psy9711 143 AG------YLLSGLLVGCA---GGINALS----AVLGGPICELYDLA--KAG-KWEEAMKLQHRLVKPD 195 (198)
Q Consensus 143 d~------~~~~~l~~G~~---G~is~~~----n~~P~~~~~l~~~~--~~g-d~~~A~~l~~~~~~l~ 195 (198)
+. ..+.++.+|++ +.+++++ |..-+.++...+.. ..| |.+...++.+.+.+++
T Consensus 206 nt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr 274 (596)
T PRK14042 206 STSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVR 274 (596)
T ss_pred CCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 32 34567788974 4444444 33334433333321 111 4455555555444443
No 219
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.36 E-value=4 Score=32.60 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
..++++-+.+++ +..++...+.. +.+...+..+.+...++|++++.++. .+.+.+..+.+. ..++|++
T Consensus 15 ~~~~~~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-------~~~~~~~l~~~~-~~~ipvV 86 (271)
T cd06312 15 WTVVKNGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPD-------PDALDPAIKRAV-AAGIPVI 86 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-------hHHhHHHHHHHH-HCCCeEE
Confidence 344555555544 77777766665 77888889998888999999997642 333445555554 4589999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.|.+
T Consensus 87 ~~~~~ 91 (271)
T cd06312 87 SFNAG 91 (271)
T ss_pred EeCCC
Confidence 99864
No 220
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=90.35 E-value=9.2 Score=31.63 Aligned_cols=191 Identities=18% Similarity=0.154 Sum_probs=103.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEE-EeCCCCcH--HHHHH-------------------------HHHHHHhcCCCE
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTII-AGTYCEST--RATID-------------------------LTQKAAKAGANA 53 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi-~gv~~~~~--~~~i~-------------------------~a~~a~~~Gad~ 53 (198)
.+...+|.+|+.++++...+..+++.| +|.-..+. .+++. -++.|.++|++.
T Consensus 11 ~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~~g~~~ 90 (280)
T cd07945 11 TSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKSAGAKV 90 (280)
T ss_pred CCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHHCCCCE
Confidence 355678888888888887555455543 22111121 12221 244566779998
Q ss_pred EEEcCCC---Cc--CCCCCHHHHHHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHH----cC-CCEEEEeeC-
Q psy9711 54 ALILCPY---YF--QKKMTEDLIYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIRGVKDT- 119 (198)
Q Consensus 54 v~~~~P~---y~--~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~----~~-p~i~giK~s- 119 (198)
+-+..|. +. +...+.++.++-++++.+.. ++.+.++=.-....+..+++.+.+++ +. ...+.++|+
T Consensus 91 i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~ 170 (280)
T cd07945 91 LNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTL 170 (280)
T ss_pred EEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 8888655 21 11234777777676666543 45555543211112245677776665 33 578999999
Q ss_pred ---CHHHHHHHHhh---cCC-CCeEEEecChh------hHHHHhhcCCC---eEEeccc----ccchHHHHHHHHHH---
Q psy9711 120 ---DNIKLANMANQ---TKD-LNFSVFAGSAG------YLLSGLLVGCA---GGINALS----AVLGGPICELYDLA--- 176 (198)
Q Consensus 120 ---d~~~~~~~~~~---~~~-~~~~v~~G~d~------~~~~~l~~G~~---G~is~~~----n~~P~~~~~l~~~~--- 176 (198)
++.++.++++. ..+ -.+. +-+.+. ..+.++..|++ +.++|++ |..-+.++.+.+..
T Consensus 171 G~~~P~~v~~l~~~l~~~~~~~~i~-~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L~~~~g~ 249 (280)
T cd07945 171 GILSPFETYTYISDMVKRYPNLHFD-FHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNAPLASVIAVLKDKLKV 249 (280)
T ss_pred CCCCHHHHHHHHHHHHhhCCCCeEE-EEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHHhcCC
Confidence 67766655532 221 2343 333332 23556788864 4455544 55566666555322
Q ss_pred HcC-CHHHHHHHHHHhhc
Q psy9711 177 KAG-KWEEAMKLQHRLVK 193 (198)
Q Consensus 177 ~~g-d~~~A~~l~~~~~~ 193 (198)
..| |.++..++.+.+..
T Consensus 250 ~t~idl~~l~~~~~~v~~ 267 (280)
T cd07945 250 KTNIDEKRLNRASRLVET 267 (280)
T ss_pred CcCcCHHHHHHHHHHHHH
Confidence 112 55666655555443
No 221
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=90.34 E-value=0.59 Score=37.40 Aligned_cols=104 Identities=10% Similarity=0.052 Sum_probs=64.4
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHH-hcCCCEEEEcCCCCcCCCCCHHHHH-HHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET-KKTIIAGTYCESTRATIDLTQKAA-KAGANAALILCPYYFQKKMTEDLIY-EHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~-~~Gad~v~~~~P~y~~~~~~~~~i~-~y~~~i~~~~~~pi~lYn 90 (198)
.+++.+.+.- +....+.+.....+++++..+.+. +.|+.|+-+.+....... ...... ..|+.. +..++||+++-
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~pv~~H~ 137 (273)
T PF04909_consen 60 WLVELAAKHPDRFIGFAAIPPPDPEDAVEELERALQELGFRGVKLHPDLGGFDP-DDPRLDDPIFEAA-EELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHSTTTEEEEEEETTTSHHHHHHHHHHHHHTTTESEEEEESSETTCCT-TSGHCHHHHHHHH-HHHT-EEEEEE
T ss_pred HHHHHHHHcCCCEEEEEEecCCCchhHHHHHHHhccccceeeeEecCCCCcccc-ccHHHHHHHHHHH-Hhhccceeeec
Confidence 3444444433 555555666667888888888777 889999998876643322 244444 555554 45789999982
Q ss_pred C----CCCcccccCHHHHHHHH-cCCCEEEEeeC
Q psy9711 91 N----TFVTNIDISVDTLVKLA-HHENIRGVKDT 119 (198)
Q Consensus 91 ~----P~~tg~~l~~~~l~~L~-~~p~i~giK~s 119 (198)
- +..+.....+..+.+++ ++|++.=|=.-
T Consensus 138 g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ii~~H 171 (273)
T PF04909_consen 138 GMTGFPDAPSDPADPEELEELLERFPDLRIILAH 171 (273)
T ss_dssp SHTHHHHHHHHHHHHHHHTTHHHHSTTSEEEESG
T ss_pred cccchhhhhHHHHHHHHHHHHHHHhcCCeEEEec
Confidence 1 11123345677777887 69986655544
No 222
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.12 E-value=5 Score=34.04 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-----CC-HHHHHHHHHHHHccC
Q psy9711 12 KLKIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-----MT-EDLIYEHFISVADNS 82 (198)
Q Consensus 12 r~~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-----~~-~~~i~~y~~~i~~~~ 82 (198)
-.++++.+++.. .+|||+| |+ +.+.++++.++|+|++.+. .|.-..-+ .. ++=-....++++++.
T Consensus 127 ~~e~I~~ir~~~p~~~vi~g~V~------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~ 200 (326)
T PRK05458 127 VINMIQHIKKHLPETFVIAGNVG------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA 200 (326)
T ss_pred HHHHHHHHHhhCCCCeEEEEecC------CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc
Confidence 345667776666 7999998 76 4556677888999998866 22211000 00 000122355666666
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
++||+- ..|..-+.+..+-|+
T Consensus 201 ~ipVIA-----dGGI~~~~Di~KaLa 221 (326)
T PRK05458 201 RKPIIA-----DGGIRTHGDIAKSIR 221 (326)
T ss_pred CCCEEE-----eCCCCCHHHHHHHHH
Confidence 788764 245444445555554
No 223
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=90.08 E-value=4 Score=34.24 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--------CCHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK--------MTEDLIYE 73 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--------~~~~~i~~ 73 (198)
-|.+++.++++.+.+.. +.-+|+|. +.+-++.++..+...++|+|.+-+. +|+ +|+ .-..+-++
T Consensus 188 ~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl-GETeee~~etl~~Lrelg~d~v~ig-qYl-~p~~~~~~v~~~~~p~~f~ 264 (302)
T TIGR00510 188 ATYRWSLKLLERAKEYLPNLPTKSGIMVGL-GETNEEIKQTLKDLRDHGVTMVTLG-QYL-RPSRRHLPVKRYVSPEEFD 264 (302)
T ss_pred CCHHHHHHHHHHHHHhCCCCeecceEEEEC-CCCHHHHHHHHHHHHhcCCCEEEee-ccc-CCCCCCCccccCCCHHHHH
Confidence 36788888888888873 56678888 5688888888888889998877775 332 222 11334455
Q ss_pred HHHHHHccCC
Q psy9711 74 HFISVADNSP 83 (198)
Q Consensus 74 y~~~i~~~~~ 83 (198)
.|+.++...+
T Consensus 265 ~~~~~a~~~g 274 (302)
T TIGR00510 265 YYRSVALEMG 274 (302)
T ss_pred HHHHHHHHcC
Confidence 6666665444
No 224
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=90.06 E-value=12 Score=32.36 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCCCE-EEEcCCCCcCCCCCHHHHHHH----HHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 39 TIDLTQKAAKAGANA-ALILCPYYFQKKMTEDLIYEH----FISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~-v~~~~P~y~~~~~~~~~i~~y----~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
.++.++...++|+++ +.+.-|.-...-+++++..+| ++.|++.. +.|+++|.. |. +...+..+.+.
T Consensus 216 ~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~ef~~P~~k~i~~~i~~~g~~~ilh~c----G~--~~~~l~~l~~~ 289 (378)
T cd03308 216 MIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEKFYWPSFKKVVEGLAARGQRIFLFFE----GD--WERYLEYLQEL 289 (378)
T ss_pred HHHHHHHHHHhCCCCceEEEecccccCccCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcC----CC--cHHHHHHHHhc
Confidence 456667777899997 566555533322347777644 47888765 467777553 32 23457777776
Q ss_pred C--CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhh-H------------HHHhhcCC--CeEEecccc-cc------
Q psy9711 111 E--NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGY-L------------LSGLLVGC--AGGINALSA-VL------ 165 (198)
Q Consensus 111 p--~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~-~------------~~~l~~G~--~G~is~~~n-~~------ 165 (198)
+ .++++=+. |+....+.+ +++..+..+.+.. + ...+..+. .|+|-+.++ +.
T Consensus 290 g~~~v~~~~~~~dl~~ak~~~----g~~~~i~GNl~p~~L~~Gt~e~i~~~v~~~l~~~~~~~gfIl~~gcgi~p~tp~~ 365 (378)
T cd03308 290 PKGKTVGLFEYGDPKKVKEKL----GDKKCIAGGFPTTLLKYGTPEECIDYVKELLDTLAPGGGFIFGTDKPIISADDAK 365 (378)
T ss_pred CCCcEEEcCCCCCHHHHHHHh----CCCEEEEcCCCCHHHhcCCHHHHHHHHHHHHHHhCCCCCEEEeCCCcCCCCCCCC
Confidence 5 25666556 877665544 3444444443331 1 12233333 567766664 33
Q ss_pred hHHHHHHHHHHH
Q psy9711 166 GGPICELYDLAK 177 (198)
Q Consensus 166 P~~~~~l~~~~~ 177 (198)
|+-+..+.++++
T Consensus 366 ~eNi~a~v~av~ 377 (378)
T cd03308 366 PENLIAVIEFVR 377 (378)
T ss_pred hHHHHHHHHHHh
Confidence 266677777654
No 225
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.05 E-value=6.7 Score=33.75 Aligned_cols=120 Identities=11% Similarity=0.082 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeCC-----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGTY-----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL 70 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv~-----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~ 70 (198)
|.+-|.+++..+++++ +.||.+=++ +.+.++++++++.+.+.|+|.+-+....|..+.....
T Consensus 189 slenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~- 267 (361)
T cd04747 189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGS- 267 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCcc-
Confidence 4566776666665554 456765443 2567899999999999999999886643322220000
Q ss_pred HHHHHHHHHccCCCCEEEEeC---CC--------Ccccc-cCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 71 IYEHFISVADNSPIPVIIYNN---TF--------VTNID-ISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 71 i~~y~~~i~~~~~~pi~lYn~---P~--------~tg~~-l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
-..+-+.+-+.+++||+.=.. |. .-+.+ -+++...++.+.. .++++=-. |+....++.
T Consensus 268 ~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~ 342 (361)
T cd04747 268 ELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVR 342 (361)
T ss_pred chhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHH
Confidence 012223344556899887321 00 00112 2778888877543 44444333 666666654
No 226
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.02 E-value=9.3 Score=31.17 Aligned_cols=60 Identities=18% Similarity=-0.030 Sum_probs=34.7
Q ss_pred eEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 26 TIIAG-TYCESTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 26 pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
.+|+| ++-.|-+.+++.|+.++++|+..+--. .|+-+..- .++-++..+++++..++|++
T Consensus 17 ~~iaGPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~--G~~gl~~L~~~~~~~Gl~~~ 83 (250)
T PRK13397 17 NFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL--GLQGIRYLHEVCQEFGLLSV 83 (250)
T ss_pred cEEeccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC--CHHHHHHHHHHHHHcCCCEE
Confidence 45665 455566677777777777777655432 24433321 22355666666666677666
No 227
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.96 E-value=12 Score=32.20 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=44.9
Q ss_pred CeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEE------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 25 KTIIAG-TYCESTRATIDLTQKAAKAGANAALI------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 25 ~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
+-||+| ++-.+.+.+++.|+..++.|+..+-- ..||-+..- .++-+++++++++.+++|++-
T Consensus 102 l~vIAGPCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~--g~~gl~~L~~~~~e~Gl~~~t 170 (352)
T PRK13396 102 VVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGH--GESALELLAAAREATGLGIIT 170 (352)
T ss_pred EEEEEeCCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCc--hHHHHHHHHHHHHHcCCcEEE
Confidence 346777 45567788999999999999876552 245545433 477778888888888888873
No 228
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=89.93 E-value=4.1 Score=34.47 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=50.5
Q ss_pred HHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 13 LKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
.++.+-+.+++ +..++. +-+..+....++..+.+.+.|+|++++.|. + ++.+....+... ..++|++.
T Consensus 39 ~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~-----d--~~al~~~l~~a~-~~gIpVV~ 110 (336)
T PRK15408 39 TSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV-----S--PDGLCPALKRAM-QRGVKVLT 110 (336)
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----C--HHHHHHHHHHHH-HCCCeEEE
Confidence 34444444444 777776 555556777788999999999999999743 2 555666666654 45899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|..
T Consensus 111 ~d~~ 114 (336)
T PRK15408 111 WDSD 114 (336)
T ss_pred eCCC
Confidence 9875
No 229
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.88 E-value=8 Score=30.22 Aligned_cols=30 Identities=23% Similarity=0.096 Sum_probs=14.5
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
|...+..+.++....+|.+.++|+|.+=..
T Consensus 122 I~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 122 ILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 444444444444444555555555544443
No 230
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.86 E-value=9.5 Score=31.05 Aligned_cols=145 Identities=11% Similarity=0.037 Sum_probs=92.9
Q ss_pred CCeEEEeC-CCCcHHHHHHHHHHHHhcCC-CEE---EEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711 24 KKTIIAGT-YCESTRATIDLTQKAAKAGA-NAA---LILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 98 (198)
Q Consensus 24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~Ga-d~v---~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~ 98 (198)
++.++-.+ |..+.+|+++.++.|.+++- +-+ ++..|+|..|. ..+.++--+.+.+ =++-++-|=.+
T Consensus 62 ~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd--~~~tv~aa~~L~~-~Gf~vlpyc~~------ 132 (250)
T PRK00208 62 GVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPD--PIETLKAAEILVK-EGFVVLPYCTD------ 132 (250)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcC--HHHHHHHHHHHHH-CCCEEEEEeCC------
Confidence 55555544 56678999999999999853 433 23348888777 8999998888874 35666645543
Q ss_pred cCHHHHHHHHcC------C--CEEEEeeC--CHHHHHHHHhhcCCCCeEEEec--C--hhhHHHHhhcCCCeEEeccccc
Q psy9711 99 ISVDTLVKLAHH------E--NIRGVKDT--DNIKLANMANQTKDLNFSVFAG--S--AGYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 99 l~~~~l~~L~~~------p--~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G--~--d~~~~~~l~~G~~G~is~~~n~ 164 (198)
++.+.++|.+. | ..+|-..+ ++..+..+. +. .++.|+.+ . .+....++.+|++|++.+++-.
T Consensus 133 -d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~-e~--~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 133 -DPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIII-EQ--ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred -CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH-Hh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 35666666643 3 44453333 656665555 32 34555543 2 2467788999999999888755
Q ss_pred c---hHH-HHHHHHHHHcCCH
Q psy9711 165 L---GGP-ICELYDLAKAGKW 181 (198)
Q Consensus 165 ~---P~~-~~~l~~~~~~gd~ 181 (198)
- |.. ..++.+++++|+.
T Consensus 209 ka~dP~~ma~af~~Av~aGr~ 229 (250)
T PRK00208 209 VAGDPVAMARAFKLAVEAGRL 229 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 5 544 4445555666653
No 231
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=89.85 E-value=8.5 Score=30.45 Aligned_cols=137 Identities=10% Similarity=0.115 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC-CEEEE-e
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI-PVIIY-N 90 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~-pi~lY-n 90 (198)
.++++.+.+.+++||++|-+=.+.+++ +.+.+.|||.+++....+.. ++ .++++++..+. ++++- +
T Consensus 62 ~~~i~~i~~~~~~pv~~~GgI~~~e~~----~~~~~~Gad~vvigs~~l~d----p~----~~~~i~~~~g~~~i~~sid 129 (234)
T cd04732 62 LELIEEIVKAVGIPVQVGGGIRSLEDI----ERLLDLGVSRVIIGTAAVKN----PE----LVKELLKEYGGERIVVGLD 129 (234)
T ss_pred HHHHHHHHHhcCCCEEEeCCcCCHHHH----HHHHHcCCCEEEECchHHhC----hH----HHHHHHHHcCCceEEEEEE
Confidence 456666666668999998776665554 44445899999887655432 32 34444444432 22221 1
Q ss_pred CC--------CCcccccCH-HHHHHHHcC--CCEE--EE-----eeC-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHH
Q psy9711 91 NT--------FVTNIDISV-DTLVKLAHH--ENIR--GV-----KDT-DNIKLANMANQTKDLNFSVFAGSA--GYLLSG 149 (198)
Q Consensus 91 ~P--------~~tg~~l~~-~~l~~L~~~--p~i~--gi-----K~s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~ 149 (198)
.+ .......++ +.+.++.+. ..++ .+ +.. |...+.++.+ ..+-.+..-.|.. +.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~-~~~ipvi~~GGi~~~~di~~~ 208 (234)
T cd04732 130 AKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAA-ATGIPVIASGGVSSLDDIKAL 208 (234)
T ss_pred eeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHH-hcCCCEEEecCCCCHHHHHHH
Confidence 11 111123344 344445442 2222 22 222 5666666653 3322232222222 245566
Q ss_pred hhcCCCeEEeccc
Q psy9711 150 LLVGCAGGINALS 162 (198)
Q Consensus 150 l~~G~~G~is~~~ 162 (198)
+..|++|++.+.+
T Consensus 209 ~~~Ga~gv~vg~~ 221 (234)
T cd04732 209 KELGVAGVIVGKA 221 (234)
T ss_pred HHCCCCEEEEeHH
Confidence 7789999998876
No 232
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=89.77 E-value=5.8 Score=32.42 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+-++.+.+.+++||+. .+.----.++..|..+|||+|+++.... +++....+-..|...++-.++=-.
T Consensus 99 ~dL~~v~~~~~~PvL~----KDFIid~~QI~eA~~~GADaVLLI~~~L------~~~~l~~l~~~a~~lGle~lVEVh-- 166 (254)
T PF00218_consen 99 EDLRAVRKAVDLPVLR----KDFIIDPYQIYEARAAGADAVLLIAAIL------SDDQLEELLELAHSLGLEALVEVH-- 166 (254)
T ss_dssp HHHHHHHHHSSS-EEE----ES---SHHHHHHHHHTT-SEEEEEGGGS------GHHHHHHHHHHHHHTT-EEEEEES--
T ss_pred HHHHHHHHHhCCCccc----ccCCCCHHHHHHHHHcCCCEeehhHHhC------CHHHHHHHHHHHHHcCCCeEEEEC--
Confidence 3444555445778776 1111113466777889999999997663 333455566667778887665321
Q ss_pred CcccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEecc
Q psy9711 94 VTNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINAL 161 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~ 161 (198)
+.+.+.+..+ -+.|+||=.- |+.+..++.. ..+++..+. +|-.+ ........|++|++-|.
T Consensus 167 ------~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~-~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe 239 (254)
T PF00218_consen 167 ------NEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAP-LIPKDVIVISESGIKTPEDARRLARAGADAVLVGE 239 (254)
T ss_dssp ------SHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHC-HSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESH
T ss_pred ------CHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHh-hCccceeEEeecCCCCHHHHHHHHHCCCCEEEECH
Confidence 3455666555 4789999764 4566666663 334444333 34332 34455678999999887
Q ss_pred c
Q psy9711 162 S 162 (198)
Q Consensus 162 ~ 162 (198)
+
T Consensus 240 ~ 240 (254)
T PF00218_consen 240 A 240 (254)
T ss_dssp H
T ss_pred H
Confidence 6
No 233
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=89.76 E-value=8.9 Score=30.56 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=18.8
Q ss_pred eEEEecCh-hhHHHHhhcCCCeEEeccc
Q psy9711 136 FSVFAGSA-GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 136 ~~v~~G~d-~~~~~~l~~G~~G~is~~~ 162 (198)
+.+-.|-. +.+.....+|+++++.|.+
T Consensus 170 I~vdGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 170 LEIDGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 33444444 3566778899999999866
No 234
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.75 E-value=4.1 Score=33.87 Aligned_cols=101 Identities=10% Similarity=0.135 Sum_probs=61.7
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCCC--c---------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYCE--S---------TRATIDLTQKAAKAGANAALILCPY---YFQ 63 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~~--~---------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~ 63 (198)
+..|+.+|-.+..+.+++.+ ++.|= -.+++. + ..+.-+-.+++++.|+|++.+.--. .++
T Consensus 105 gS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK12857 105 GSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYK 184 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccC
Confidence 46789999999999999998 55552 123211 0 0111223344467799988887422 121
Q ss_pred CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
.. ++==++-.++|.+.+++|++++= |..++.+.+.+..+..
T Consensus 185 ~~--p~Ld~~~L~~i~~~~~vPLVlHG-----gSG~~~e~~~~ai~~G 225 (284)
T PRK12857 185 GE--PKLDFDRLAKIKELVNIPIVLHG-----SSGVPDEAIRKAISLG 225 (284)
T ss_pred CC--CcCCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence 11 22223456677777799998854 4457888888887554
No 235
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=89.75 E-value=1.4 Score=35.70 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
..|+.++|.++++.+.+. +..|+.-+|..+. .+-+++++..-++||+.|++-.-
T Consensus 108 i~l~~~~r~~~I~~~~~~-Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 169 (244)
T PF02679_consen 108 IDLPEEERLRLIRKAKEE-GFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR 169 (244)
T ss_dssp S---HHHHHHHHHHHCCT-TSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred eeCCHHHHHHHHHHHHHC-CCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 578999999999998766 7788887776553 56688999999999999999643
No 236
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=89.66 E-value=10 Score=34.38 Aligned_cols=82 Identities=20% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCeEEEeC------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET---KKTIIAGT------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
...|.+|-.+.+..+++.+ +..|..+. +..+.+..++.++.+.++|++.+.+.--. ... +|.++.+.+
T Consensus 113 l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTv-G~~--~P~~v~~li 189 (526)
T TIGR00977 113 LQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTN-GGT--LPHEISEIT 189 (526)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCC-CCc--CHHHHHHHH
Confidence 4567888888877777776 45554322 24568999999999999999998776333 333 499999999
Q ss_pred HHHHccCCCC-EEEE
Q psy9711 76 ISVADNSPIP-VIIY 89 (198)
Q Consensus 76 ~~i~~~~~~p-i~lY 89 (198)
+.+.+.++.+ |-+|
T Consensus 190 ~~l~~~~~~~~i~vH 204 (526)
T TIGR00977 190 TKVKRSLKQPQLGIH 204 (526)
T ss_pred HHHHHhCCCCEEEEE
Confidence 9999988766 4444
No 237
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.66 E-value=9.5 Score=30.75 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=45.8
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH-----------------HHHHHHHHHHHccCCCCEEE--
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTE-----------------DLIYEHFISVADNSPIPVII-- 88 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~-----------------~~i~~y~~~i~~~~~~pi~l-- 88 (198)
+.-+|.++.+...+.++..++.|||.+-+--|+-.+. ++- +...+..+.+.+.+++|+++
T Consensus 5 y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv-~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~ 83 (242)
T cd04724 5 YITAGDPDLETTLEILKALVEAGADIIELGIPFSDPV-ADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMG 83 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEE
Confidence 3456888899999999999999999999997774332 221 24455566666666788777
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
|-+|
T Consensus 84 y~n~ 87 (242)
T cd04724 84 YYNP 87 (242)
T ss_pred ecCH
Confidence 8444
No 238
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=89.62 E-value=0.83 Score=37.26 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=84.2
Q ss_pred CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC-C
Q psy9711 24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT-F 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P-~ 93 (198)
+.+||+=+--.|. .+-.+.++.+++.||+++.++. |.||+.+ . +|.+.+.+++++||.--|+= .
T Consensus 45 ~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs--~----e~L~~v~~~v~~PvL~KDFiiD 118 (254)
T COG0134 45 KPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGS--F----EDLRAVRAAVDLPVLRKDFIID 118 (254)
T ss_pred CceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCC--H----HHHHHHHHhcCCCeeeccCCCC
Confidence 8889987632222 3457799999999999999996 8888876 4 56688989999999988761 1
Q ss_pred C--------ccc--------ccCHHHHHHH------------------------Hc-CCCEEEEeeC-------CHHHHH
Q psy9711 94 V--------TNI--------DISVDTLVKL------------------------AH-HENIRGVKDT-------DNIKLA 125 (198)
Q Consensus 94 ~--------tg~--------~l~~~~l~~L------------------------~~-~p~i~giK~s-------d~~~~~ 125 (198)
. .|- .++.+.+.+| .+ -+.|+||=.- |.....
T Consensus 119 ~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~ 198 (254)
T COG0134 119 PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTE 198 (254)
T ss_pred HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHH
Confidence 0 121 2344433333 33 2467777654 555655
Q ss_pred HHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEeccc
Q psy9711 126 NMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 126 ~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~ 162 (198)
++.. ..+++..+. +|..+ .+......|++|+.-|.+
T Consensus 199 ~la~-~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~s 238 (254)
T COG0134 199 KLAP-LIPKDVILISESGISTPEDVRRLAKAGADAFLVGEA 238 (254)
T ss_pred HHHh-hCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHH
Confidence 5552 344443333 33332 344556788999988876
No 239
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=89.61 E-value=9.5 Score=30.65 Aligned_cols=139 Identities=13% Similarity=0.029 Sum_probs=85.7
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCC--cCCC------CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYY--FQKK------MTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y--~~~~------~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.|+++++.+.+.++..+.++.+++. +|.+=+- .|.- .+.. .+++.+.+..+.+.+ +++||.+=-.+.
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g 149 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAG 149 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCC
Confidence 78999999999999999999999885 5777664 2331 0100 247888888898876 689998866543
Q ss_pred CcccccCHHHHHHHHcCCCEEEEeeC--------CHHHHHHHHhhcCCCCeEEE-ecC-h--hhHHHHhhcCCCeEEecc
Q psy9711 94 VTNIDISVDTLVKLAHHENIRGVKDT--------DNIKLANMANQTKDLNFSVF-AGS-A--GYLLSGLLVGCAGGINAL 161 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~-~G~-d--~~~~~~l~~G~~G~is~~ 161 (198)
.+ .-+.++...|.+.. +.++--+ |+..+.++ . .++.|+ +|. . +.....+..|+||++.|-
T Consensus 150 ~~--~~~~~la~~l~~aG-~d~ihv~~~~~g~~ad~~~I~~i----~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 150 VD--VDDEELARLIEKAG-ADIIHVDAMDPGNHADLKKIRDI----S-TELFIIGNNSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cC--cCHHHHHHHHHHhC-CCEEEECcCCCCCCCcHHHHHHh----c-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcC
Confidence 32 12233333443321 1222212 33333322 1 334444 332 1 245566778999999999
Q ss_pred cccchHHHHHHH
Q psy9711 162 SAVLGGPICELY 173 (198)
Q Consensus 162 ~n~~P~~~~~l~ 173 (198)
+ .-|..+.++.
T Consensus 222 ~-~~p~~~~~~~ 232 (233)
T cd02911 222 A-SLPENIEWLV 232 (233)
T ss_pred C-CCchHHHHhh
Confidence 8 7888887664
No 240
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=89.58 E-value=5.1 Score=31.75 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++.+.+++ +.-++...+..+.+...+..+.+.+.++|++++.++. .+...+.++.+ .+.++|+++
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~-------~~~~~~~~~~~-~~~~ipvV~ 85 (267)
T cd06322 14 YIELANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVD-------SKGIRAAIAKA-KKAGIPVIT 85 (267)
T ss_pred HHHHHHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hhhhHHHHHHH-HHCCCCEEE
Confidence 344555555555 6677777666677778888888888999999997642 22233445554 356899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 86 ~~~~ 89 (267)
T cd06322 86 VDIA 89 (267)
T ss_pred Eccc
Confidence 9965
No 241
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.53 E-value=9.6 Score=30.62 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-e
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-N 90 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n 90 (198)
..++++.+.+.+.+||.+|-|=.+.+++ +.+-++||+.+++..-.+.. + +.++++++..+-.+++- |
T Consensus 64 n~~~I~~i~~~~~~pi~vGGGIrs~e~v----~~~l~~Ga~kvvigt~a~~~----~----~~l~~~~~~fg~~ivvslD 131 (234)
T PRK13587 64 EFDYIKSLRRLTTKDIEVGGGIRTKSQI----MDYFAAGINYCIVGTKGIQD----T----DWLKEMAHTFPGRIYLSVD 131 (234)
T ss_pred hHHHHHHHHhhcCCeEEEcCCcCCHHHH----HHHHHCCCCEEEECchHhcC----H----HHHHHHHHHcCCCEEEEEE
Confidence 4567777777558999999887776664 44556899999876544332 2 24444444432112221 1
Q ss_pred C-------C-CCcccccCHH-HHHHHHcCC--CEEEEee-------C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHH
Q psy9711 91 N-------T-FVTNIDISVD-TLVKLAHHE--NIRGVKD-------T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSG 149 (198)
Q Consensus 91 ~-------P-~~tg~~l~~~-~l~~L~~~p--~i~giK~-------s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~ 149 (198)
. . ......+++. .+.++.+.+ .|+-.-. . |...+.++.+ ..+-++.+-.|.. +.+...
T Consensus 132 ~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~-~~~ipvi~~GGi~s~edi~~l 210 (234)
T PRK13587 132 AYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK-ATTIPVIASGGIRHQQDIQRL 210 (234)
T ss_pred eeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHH-hCCCCEEEeCCCCCHHHHHHH
Confidence 1 0 0112234444 444544433 3333222 2 4555666653 3333343333332 345666
Q ss_pred hhcCCCeEEeccc
Q psy9711 150 LLVGCAGGINALS 162 (198)
Q Consensus 150 l~~G~~G~is~~~ 162 (198)
+..|++|++.|.+
T Consensus 211 ~~~G~~~vivG~a 223 (234)
T PRK13587 211 ASLNVHAAIIGKA 223 (234)
T ss_pred HHcCCCEEEEhHH
Confidence 7889999999875
No 242
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=89.48 E-value=1.3 Score=37.71 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHH---HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKA---AKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a---~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
+.+.-.+.++.+++.+ ++||++ |=...+.++.+++++.+ .+.|+.++.+.--.|..+ .++-++..++|.+
T Consensus 262 ~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~---~~ea~~~~~~i~~ 338 (348)
T PRK09250 262 TSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRP---MAEGVKLLNAIQD 338 (348)
T ss_pred cccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCC---cHHHHHHHHHHHH
Confidence 3344455577777776 889755 55555788999999999 999999999998888877 4556677777766
Q ss_pred cC
Q psy9711 81 NS 82 (198)
Q Consensus 81 ~~ 82 (198)
-+
T Consensus 339 i~ 340 (348)
T PRK09250 339 VY 340 (348)
T ss_pred Hh
Confidence 43
No 243
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=89.46 E-value=1.9 Score=35.06 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCE
Q psy9711 36 TRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENI 113 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i 113 (198)
..+.++.++.+++.|++.+.+.. .--... .--.++++.+.+.+++||+. .|-.-+++.+.++.+..++
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~----g~~~~~~~~i~~~~~ipvia------~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKS----GYDLELTKAVSEAVKIPVIA------SGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCC----CCCHHHHHHHHHhCCCCEEE------eCCCCCHHHHHHHHHcCCc
Confidence 45678999999999999999953 211111 11146788899889999887 4555688999999887777
Q ss_pred EEEee
Q psy9711 114 RGVKD 118 (198)
Q Consensus 114 ~giK~ 118 (198)
.|+=.
T Consensus 224 dgv~~ 228 (254)
T TIGR00735 224 DAALA 228 (254)
T ss_pred ceeeE
Confidence 77544
No 244
>PRK00915 2-isopropylmalate synthase; Validated
Probab=89.39 E-value=6.3 Score=35.54 Aligned_cols=81 Identities=15% Similarity=0.067 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..|.+|-.+.+..+++.+ +..|..+. +..+.+..++.++.+.++|++.+.+.--. ... +|+++.+.++.+.
T Consensus 112 ~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-G~~--~P~~~~~~i~~l~ 188 (513)
T PRK00915 112 KMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTV-GYT--TPEEFGELIKTLR 188 (513)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-CCC--CHHHHHHHHHHHH
Confidence 456777776666666666 56676665 34457889999999999999987665443 333 3999999999998
Q ss_pred ccCC----CCEEEE
Q psy9711 80 DNSP----IPVIIY 89 (198)
Q Consensus 80 ~~~~----~pi~lY 89 (198)
+..+ +|+-++
T Consensus 189 ~~~~~~~~v~l~~H 202 (513)
T PRK00915 189 ERVPNIDKAIISVH 202 (513)
T ss_pred HhCCCcccceEEEE
Confidence 8775 788775
No 245
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=89.39 E-value=5.5 Score=32.47 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH---
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA--- 108 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~--- 108 (198)
..+..+...+.++.+++.|.....-.. .-... +++.+.+..+.+.+ .+...+ ..+...| .++|+.+.+|.
T Consensus 107 ~~s~~~~~~~~i~~ak~~G~~v~~~~~-~~~~~--~~~~~~~~~~~~~~-~G~d~i--~l~DT~G-~~~P~~v~~lv~~l 179 (263)
T cd07943 107 HCTEADVSEQHIGAARKLGMDVVGFLM-MSHMA--SPEELAEQAKLMES-YGADCV--YVTDSAG-AMLPDDVRERVRAL 179 (263)
T ss_pred chhhHHHHHHHHHHHHHCCCeEEEEEE-eccCC--CHHHHHHHHHHHHH-cCCCEE--EEcCCCC-CcCHHHHHHHHHHH
Confidence 334467788888888888864322221 11223 38888888887764 344433 3455556 45555555444
Q ss_pred -c-CCC-EEEEeeC
Q psy9711 109 -H-HEN-IRGVKDT 119 (198)
Q Consensus 109 -~-~p~-i~giK~s 119 (198)
+ .+. -+|+-.-
T Consensus 180 ~~~~~~~~l~~H~H 193 (263)
T cd07943 180 REALDPTPVGFHGH 193 (263)
T ss_pred HHhCCCceEEEEec
Confidence 2 344 4555444
No 246
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=89.37 E-value=10 Score=30.81 Aligned_cols=140 Identities=12% Similarity=0.101 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CCE--
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IPV-- 86 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~pi-- 86 (198)
..++++.+++...+||++|-|-.+.+++.++ .+.|++++.+-.=.+.. + +..++++++.+ +++
T Consensus 62 n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l----~~~G~~~vvigs~~~~~----~----~~~~~~~~~~~~~~i~vsi 129 (258)
T PRK01033 62 NYELIENLASECFMPLCYGGGIKTLEQAKKI----FSLGVEKVSINTAALED----P----DLITEAAERFGSQSVVVSI 129 (258)
T ss_pred cHHHHHHHHHhCCCCEEECCCCCCHHHHHHH----HHCCCCEEEEChHHhcC----H----HHHHHHHHHhCCCcEEEEE
Confidence 3567777777668999999888777664444 46799999886433322 3 23344443321 111
Q ss_pred ----------EEEeCCCCcccccCHHHHH-HHHcC--CCEEEE-------eeC-CHHHHHHHHhhcCCCCeEEE-ec-Ch
Q psy9711 87 ----------IIYNNTFVTNIDISVDTLV-KLAHH--ENIRGV-------KDT-DNIKLANMANQTKDLNFSVF-AG-SA 143 (198)
Q Consensus 87 ----------~lYn~P~~tg~~l~~~~l~-~L~~~--p~i~gi-------K~s-d~~~~~~~~~~~~~~~~~v~-~G-~d 143 (198)
.++..-+.....+++..+. ++.+. ..|+-. ... |++.+.++.+ .. ++.|+ +| ..
T Consensus 130 D~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~-~~--~ipvIasGGv~ 206 (258)
T PRK01033 130 DVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRN-AL--KIPLIALGGAG 206 (258)
T ss_pred EEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHh-hC--CCCEEEeCCCC
Confidence 1111111112345555444 44342 334422 112 6777777663 33 33343 33 22
Q ss_pred --hhHHHHh-hcCCCeEEecccccch
Q psy9711 144 --GYLLSGL-LVGCAGGINALSAVLG 166 (198)
Q Consensus 144 --~~~~~~l-~~G~~G~is~~~n~~P 166 (198)
+.+...+ ..|++|++.|.+-.+-
T Consensus 207 s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 207 SLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 2455566 6899999999885553
No 247
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=89.34 E-value=9.3 Score=30.21 Aligned_cols=139 Identities=17% Similarity=0.072 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
..+|.++..++++.+.+....|+.+++-..+. ....+.++.+.++|+|++.+..- . ...+.+..+ ..+
T Consensus 34 ~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~----~---~~~~~~~~~----~~~ 102 (236)
T cd04730 34 GYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG----P---PAEVVERLK----AAG 102 (236)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC----C---CHHHHHHHH----HcC
Confidence 34678888888888876543466666655432 35567778888999999987422 2 333333333 346
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEee------C-----C---HHHHHHHHhhcCCCCeEEEecCh--hhHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD------T-----D---NIKLANMANQTKDLNFSVFAGSA--GYLL 147 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~------s-----d---~~~~~~~~~~~~~~~~~v~~G~d--~~~~ 147 (198)
++++.- . -+.+.+.++.+.. .-+++. + + ...+.++. +..+-.+-.-.|.. +...
T Consensus 103 i~~i~~-v-------~~~~~~~~~~~~g-ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~-~~~~~Pvi~~GGI~~~~~v~ 172 (236)
T cd04730 103 IKVIPT-V-------TSVEEARKAEAAG-ADALVAQGAEAGGHRGTFDIGTFALVPEVR-DAVDIPVIAAGGIADGRGIA 172 (236)
T ss_pred CEEEEe-C-------CCHHHHHHHHHcC-CCEEEEeCcCCCCCCCccccCHHHHHHHHH-HHhCCCEEEECCCCCHHHHH
Confidence 776542 1 1345556655432 222222 1 1 22334433 22233333333433 3466
Q ss_pred HHhhcCCCeEEeccccc
Q psy9711 148 SGLLVGCAGGINALSAV 164 (198)
Q Consensus 148 ~~l~~G~~G~is~~~n~ 164 (198)
..+..|++|++.+.+.+
T Consensus 173 ~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 173 AALALGADGVQMGTRFL 189 (236)
T ss_pred HHHHcCCcEEEEchhhh
Confidence 77889999999887643
No 248
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=89.34 E-value=11 Score=31.04 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHH----HHHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKK--MTEDL----IYEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~----i~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
.++.++...++|+|++.+.-|...... ++++. +..|++.+.+.. +.|+++|..- .. ...+..|.+
T Consensus 146 ~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg----~~--~~~~~~l~~ 219 (306)
T cd00465 146 ILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCY----DA--ADLLEEMIQ 219 (306)
T ss_pred HHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECC----CH--HHHHHHHHH
Confidence 456666777899999999988764330 12444 346678888754 5688887753 22 456777776
Q ss_pred CC-CEEEE
Q psy9711 110 HE-NIRGV 116 (198)
Q Consensus 110 ~p-~i~gi 116 (198)
.+ ++..+
T Consensus 220 ~~~d~~~~ 227 (306)
T cd00465 220 LGVDVISF 227 (306)
T ss_pred hCcceEec
Confidence 54 55444
No 249
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.30 E-value=8 Score=32.31 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCC------c--CCCCCHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYY------F--QKKMTEDLIYEHF 75 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y------~--~~~~~~~~i~~y~ 75 (198)
.+|.+|..+.++.+.+.+.+||++=+ |-.+..++.+.++...++|+.++.+---.+ . +.-.+.++..+-.
T Consensus 60 ~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI 139 (292)
T PRK11320 60 ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRI 139 (292)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHH
Confidence 68999999999999887799999954 433888999999999999999999964321 1 1112478888888
Q ss_pred HHHHccC-CCCEEEEeC-CCCcccccCHHHHHHHHc---C-CCEEEEeeC-CHHHHHHHHhhcCCCCe--EEEecC-hh-
Q psy9711 76 ISVADNS-PIPVIIYNN-TFVTNIDISVDTLVKLAH---H-ENIRGVKDT-DNIKLANMANQTKDLNF--SVFAGS-AG- 144 (198)
Q Consensus 76 ~~i~~~~-~~pi~lYn~-P~~tg~~l~~~~l~~L~~---~-p~i~giK~s-d~~~~~~~~~~~~~~~~--~v~~G~-d~- 144 (198)
+...++. +-+++|==- -......+ .+.+.|... - -..+.+=-. +...+.++.+. .+-.+ .+..+. ..
T Consensus 140 ~Aa~~a~~~~d~~IiARTDa~~~~g~-deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~-~~~Pl~~n~~~~~~~p~ 217 (292)
T PRK11320 140 KAAVDARTDPDFVIMARTDALAVEGL-DAAIERAQAYVEAGADMIFPEAMTELEMYRRFADA-VKVPILANITEFGATPL 217 (292)
T ss_pred HHHHHhccCCCeEEEEecCcccccCH-HHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHh-cCCCEEEEeccCCCCCC
Confidence 8888765 566666311 00111122 356666542 1 123333212 56666665532 22233 333322 11
Q ss_pred -hHHHHhhcCCCeEEeccccc
Q psy9711 145 -YLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 145 -~~~~~l~~G~~G~is~~~n~ 164 (198)
..-..-.+|.+=++-+...+
T Consensus 218 ~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 218 FTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred CCHHHHHHcCCcEEEEChHHH
Confidence 23344567888776665543
No 250
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=89.28 E-value=3.9 Score=34.17 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCeEEE--e-CCC-------CcHHHHHHHHHHHHhcCCCEEEEcC-CC---CcCCCCC
Q psy9711 5 FKSTEEEKLKIISTLRQET---KKTIIA--G-TYC-------ESTRATIDLTQKAAKAGANAALILC-PY---YFQKKMT 67 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~--g-v~~-------~~~~~~i~~a~~a~~~Gad~v~~~~-P~---y~~~~~~ 67 (198)
..++.+|..+..+.+++.+ +++|=+ | +++ .+.-...+.++.+.+.|+|.+-+.- |. |...+
T Consensus 108 S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~-- 185 (293)
T PRK07315 108 SHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENW-- 185 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCC--
Confidence 4689999999999999987 565522 1 111 0111234445555578999988872 44 43211
Q ss_pred HHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 68 EDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 68 ~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
..-=++..++|.+++ ++|++++ .|..++.+.+.++.+..
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVlh-----GGSGi~~e~~~~~i~~G 225 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVLH-----GGSGIPDDQIQEAIKLG 225 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEEE-----CCCCCCHHHHHHHHHcC
Confidence 222245678888888 5999885 35568888888887543
No 251
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.25 E-value=13 Score=31.73 Aligned_cols=140 Identities=10% Similarity=0.071 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKA--GANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~--Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
++.|++.+.++.+......-+.+.+|. .++..+.++...++ |+|.+.+=.-.-. .+.+++..+.|-+..+-
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~--~~~d~er~~~L~~a~~~~d~iviD~AhGh-----s~~~i~~ik~ir~~~p~ 150 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGS--SDNDLEKMTSILEAVPQLKFICLDVANGY-----SEHFVEFVKLVREAFPE 150 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEecc--CHHHHHHHHHHHhcCCCCCEEEEECCCCc-----HHHHHHHHHHHHhhCCC
Confidence 799999999987665542223333332 33445666666666 5999888655422 56666777777666654
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------------CHHHHHHHH---hhcCCCCeEEEe-c---C
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------------DNIKLANMA---NQTKDLNFSVFA-G---S 142 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------------d~~~~~~~~---~~~~~~~~~v~~-G---~ 142 (198)
+.++ -|+-.+++...+|.+. ..-|+|.+ ...++..+. +...+.+..|+. | .
T Consensus 151 ~~vi------aGNV~T~e~a~~Li~a-GAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~ 223 (343)
T TIGR01305 151 HTIM------AGNVVTGEMVEELILS-GADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTC 223 (343)
T ss_pred CeEE------EecccCHHHHHHHHHc-CCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCc
Confidence 4444 4667899999999853 33344432 113333332 112223555553 2 1
Q ss_pred hhhHHHHhhcCCCeEEec
Q psy9711 143 AGYLLSGLLVGCAGGINA 160 (198)
Q Consensus 143 d~~~~~~l~~G~~G~is~ 160 (198)
...+.-++.+|++.++.|
T Consensus 224 ~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 224 PGDVAKAFGAGADFVMLG 241 (343)
T ss_pred hhHHHHHHHcCCCEEEEC
Confidence 245788999999999877
No 252
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=89.24 E-value=13 Score=31.60 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=90.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC--------CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK--------MTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~--------~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
..|+++++.+++.++..+-++.++++|+|++-+- .|....-+ .+++-+.+-.+++-++++.||.+.--.+
T Consensus 64 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g 143 (333)
T PRK11815 64 EHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG 143 (333)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee
Confidence 7899999999999999999999999999999765 34321100 1367777788888878889999875333
Q ss_pred CcccccCH----HHHHHHHcCCCEEEEeeC--------------------CHHHHHHHHhhcCCCCeEEE-ecChh---h
Q psy9711 94 VTNIDISV----DTLVKLAHHENIRGVKDT--------------------DNIKLANMANQTKDLNFSVF-AGSAG---Y 145 (198)
Q Consensus 94 ~tg~~l~~----~~l~~L~~~p~i~giK~s--------------------d~~~~~~~~~~~~~~~~~v~-~G~d~---~ 145 (198)
..+.. +. +.+..|.+. ++.++-.+ ++..+.++. +.. +++.|+ +|.=. .
T Consensus 144 ~~~~~-t~~~~~~~~~~l~~a-G~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~-~~~-~~iPVI~nGgI~s~ed 219 (333)
T PRK11815 144 IDDQD-SYEFLCDFVDTVAEA-GCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLK-RDF-PHLTIEINGGIKTLEE 219 (333)
T ss_pred eCCCc-CHHHHHHHHHHHHHh-CCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHH-HhC-CCCeEEEECCcCCHHH
Confidence 33321 22 233333221 12222111 344454443 222 344444 44321 1
Q ss_pred HHHHhhcCCCeEEeccccc-chHHHHHHHHHHH
Q psy9711 146 LLSGLLVGCAGGINALSAV-LGGPICELYDLAK 177 (198)
Q Consensus 146 ~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~ 177 (198)
... +..|++|++.|-+.+ -|.++.++-+.+.
T Consensus 220 a~~-~l~~aDgVmIGRa~l~nP~~~~~~~~~~~ 251 (333)
T PRK11815 220 AKE-HLQHVDGVMIGRAAYHNPYLLAEVDRELF 251 (333)
T ss_pred HHH-HHhcCCEEEEcHHHHhCCHHHHHHHHHhc
Confidence 223 334899999998865 4888877755444
No 253
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=89.20 E-value=5.9 Score=32.40 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 11 EKLKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
=+..+++.+.+++ +..++. +.+..+.+...+..+.+.+.++|++++.++. .+.+.+.++.+ ...++|+
T Consensus 13 f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~-------~~~~~~~~~~~-~~~~iPv 84 (298)
T cd06302 13 YFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPND-------PDALEPVLKKA-REAGIKV 84 (298)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-------HHHHHHHHHHH-HHCCCeE
Confidence 3445555555555 677764 5666677888888988888999999997532 34344555655 3568999
Q ss_pred EEEeCC
Q psy9711 87 IIYNNT 92 (198)
Q Consensus 87 ~lYn~P 92 (198)
++.|.+
T Consensus 85 V~v~~~ 90 (298)
T cd06302 85 VTHDSD 90 (298)
T ss_pred EEEcCC
Confidence 999975
No 254
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.13 E-value=1.4 Score=35.37 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEE
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 114 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~ 114 (198)
+..++++.++.+.+.|+|.+.+..-. ...+ .+.--.++.+.+.+.+++|++. .|---+++.+.++.+..++.
T Consensus 147 ~~~~~~~~~~~l~~~G~d~i~v~~i~-~~g~-~~g~~~~~i~~i~~~~~~pvia------~GGi~~~~di~~~l~~~g~d 218 (243)
T cd04731 147 TGLDAVEWAKEVEELGAGEILLTSMD-RDGT-KKGYDLELIRAVSSAVNIPVIA------SGGAGKPEHFVEAFEEGGAD 218 (243)
T ss_pred cCCCHHHHHHHHHHCCCCEEEEeccC-CCCC-CCCCCHHHHHHHHhhCCCCEEE------eCCCCCHHHHHHHHHhCCCC
Confidence 35677899999999999999996421 1111 0111246678888888999887 44455788899888766665
Q ss_pred EEeeC
Q psy9711 115 GVKDT 119 (198)
Q Consensus 115 giK~s 119 (198)
|+=-+
T Consensus 219 gv~vg 223 (243)
T cd04731 219 AALAA 223 (243)
T ss_pred EEEEe
Confidence 55554
No 255
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=89.13 E-value=3.8 Score=33.56 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhc---CCeEEEeC--CCCc-----------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 9 EEEKLKIISTLRQET---KKTIIAGT--YCES-----------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~---~~pvi~gv--~~~~-----------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
.++|..+++..-+.+ ++|.++-. .... ....++-++..-+.|+|-+=+--|.|.... +++..
T Consensus 142 neqk~a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPvyveGe--~~ea~ 219 (306)
T COG3684 142 NEQKLAYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPVYVEGE--QEEAA 219 (306)
T ss_pred hHHHHHHHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecceeccCc--cHHHH
Confidence 357888888888887 88877653 1111 234455666667889999999999998876 99999
Q ss_pred HHHHHHHccCCCCEEEEe
Q psy9711 73 EHFISVADNSPIPVIIYN 90 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn 90 (198)
.+|++..+.+++|.++--
T Consensus 220 ~~f~~~~~~~~lP~i~LS 237 (306)
T COG3684 220 AAFQRQNDHINLPWIYLS 237 (306)
T ss_pred HHHHHhhcCCCCCeEEEe
Confidence 999999999999988744
No 256
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=89.12 E-value=2.7 Score=35.91 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCC--CEEEEcC-------CCCcCCCCCHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGA--NAALILC-------PYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Ga--d~v~~~~-------P~y~~~~~~~~~i~~y~~ 76 (198)
.|.+|-.+.++.+++.+.+|+++ |-|. +.++.++..+.|.++|+ .|+++.- |.|..+. .+...++.+
T Consensus 224 ~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~~~~~~--~~~~~~~l~ 300 (340)
T PRK12858 224 YTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIEPYAAEG--EEARRAWLN 300 (340)
T ss_pred ccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhccccCCC--HHHHHHHHH
Confidence 47777778888888777888766 5554 88999999999999999 8998863 4455555 777766665
Q ss_pred HHH
Q psy9711 77 SVA 79 (198)
Q Consensus 77 ~i~ 79 (198)
...
T Consensus 301 ~~g 303 (340)
T PRK12858 301 TEG 303 (340)
T ss_pred HHh
Confidence 543
No 257
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=88.96 E-value=9.8 Score=29.97 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCeEEEeCCC----C-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYC----E-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~----~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
.+++.+++..++||.+=+-. . -.+...+-++.++++|+|++++..=.-... . +.+..+.+-+.+. ++
T Consensus 40 g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~-i-D~~~~~~Li~~a~--~~ 115 (201)
T PF03932_consen 40 GLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGE-I-DEEALEELIEAAG--GM 115 (201)
T ss_dssp HHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSS-B--HHHHHHHHHHHT--TS
T ss_pred HHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCC-c-CHHHHHHHHHhcC--CC
Confidence 46666666658887664421 1 135567888899999999999874211111 1 4444444444443 79
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--------CHHHHHHHHhhcCCCCeEEEecCh
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--------DNIKLANMANQTKDLNFSVFAGSA 143 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~~G~d 143 (198)
|+.++-....+- =+.+.+..|.++ ++..|=-| +.+.+.++.++ ...++.|+.|..
T Consensus 116 ~~tFHRAfD~~~--d~~~al~~L~~l-G~~rVLTSGg~~~a~~g~~~L~~lv~~-a~~~i~Im~GgG 178 (201)
T PF03932_consen 116 PVTFHRAFDEVP--DPEEALEQLIEL-GFDRVLTSGGAPTALEGIENLKELVEQ-AKGRIEIMPGGG 178 (201)
T ss_dssp EEEE-GGGGGSS--THHHHHHHHHHH-T-SEEEESTTSSSTTTCHHHHHHHHHH-HTTSSEEEEESS
T ss_pred eEEEeCcHHHhC--CHHHHHHHHHhc-CCCEEECCCCCCCHHHHHHHHHHHHHH-cCCCcEEEecCC
Confidence 999875433221 134566777765 56665433 56778777743 457888988764
No 258
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.94 E-value=14 Score=32.77 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=77.0
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHH
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV 105 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~ 105 (198)
+++|..-....+..+.++.+.++|+|.+.+-... .. .+.+.+..+.|.+.. ++||+. |.-.+++...
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~---g~--~~~~~~~i~~i~~~~~~~~vi~-------G~v~t~~~a~ 280 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSH---GH--SIYVIDSIKEIKKTYPDLDIIA-------GNVATAEQAK 280 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCC---Cc--HhHHHHHHHHHHHhCCCCCEEE-------EeCCCHHHHH
Confidence 3344332234678899999999999999986544 22 456777777777664 699888 6678899998
Q ss_pred HHHcCCCEEEEeeC---------------CHHHH---HHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccc
Q psy9711 106 KLAHHENIRGVKDT---------------DNIKL---ANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 106 ~L~~~p~i~giK~s---------------d~~~~---~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~ 162 (198)
.|.+. .+-+||.+ ...++ .+..+.....++.|+. |.- ..+..++.+|++.++.|..
T Consensus 281 ~l~~a-Gad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 281 ALIDA-GADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred HHHHh-CCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 88863 22233211 11122 2222111123456665 433 3577899999999988765
No 259
>PRK09389 (R)-citramalate synthase; Provisional
Probab=88.92 E-value=6.3 Score=35.32 Aligned_cols=81 Identities=20% Similarity=0.094 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..|.+|-.+.+..+++.+ +..|.++. +..+.+..++.++.+.++|++.+.+. -..... +|.++.+.++.+.
T Consensus 106 ~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~--~P~~~~~lv~~l~ 182 (488)
T PRK09389 106 KKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFC-DTVGIL--TPEKTYELFKRLS 182 (488)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCc--CHHHHHHHHHHHH
Confidence 467777777777777766 55555543 33456778899999999999986664 333333 4999999999999
Q ss_pred ccCCCCEEEE
Q psy9711 80 DNSPIPVIIY 89 (198)
Q Consensus 80 ~~~~~pi~lY 89 (198)
+..++|+-+|
T Consensus 183 ~~~~v~l~~H 192 (488)
T PRK09389 183 ELVKGPVSIH 192 (488)
T ss_pred hhcCCeEEEE
Confidence 8888888875
No 260
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.90 E-value=14 Score=32.71 Aligned_cols=154 Identities=14% Similarity=0.099 Sum_probs=76.2
Q ss_pred EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE---EEEeC-CCCcccccCHHHH
Q psy9711 29 AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV---IIYNN-TFVTNIDISVDTL 104 (198)
Q Consensus 29 ~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi---~lYn~-P~~tg~~l~~~~l 104 (198)
.|.....-+-..+..+.|.+.|+|.+-+.-+.-...+ -++.+++ +...++-+ +-|-. | ..+++.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n--~~~~v~~----ak~~G~~v~~~i~~t~~p-----~~~~~~~ 156 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRN--LETAVKA----TKKAGGHAQVAISYTTSP-----VHTIDYF 156 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHH--HHHHHHH----HHHcCCeEEEEEEeecCC-----CCCHHHH
Confidence 3444332333456678888999999888765432222 2233332 23334332 12222 2 2344544
Q ss_pred HH----HHcC-CCEEEEeeC----CHHHHHHHHhh---cCCCCeEEEecChh------hHHHHhhcCCCeEEecc-----
Q psy9711 105 VK----LAHH-ENIRGVKDT----DNIKLANMANQ---TKDLNFSVFAGSAG------YLLSGLLVGCAGGINAL----- 161 (198)
Q Consensus 105 ~~----L~~~-p~i~giK~s----d~~~~~~~~~~---~~~~~~~v~~G~d~------~~~~~l~~G~~G~is~~----- 161 (198)
.+ +.+. ...+.+||+ ++.++.++++. ..+-.+.+ -+++. ..+.++.+|++.+=+++
T Consensus 157 ~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~-H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~ 235 (448)
T PRK12331 157 VKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV-HTHATSGIAEMTYLKAIEAGADIIDTAISPFAG 235 (448)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE-EecCCCCcHHHHHHHHHHcCCCEEEeeccccCC
Confidence 44 4444 589999999 67666665532 22223333 23321 34567889976443333
Q ss_pred --cccchHHHHHHHHHH--HcC-CHHHHHHHHHHhhch
Q psy9711 162 --SAVLGGPICELYDLA--KAG-KWEEAMKLQHRLVKP 194 (198)
Q Consensus 162 --~n~~P~~~~~l~~~~--~~g-d~~~A~~l~~~~~~l 194 (198)
+|..-+.++...+.. ..| |.+...++.+.+.++
T Consensus 236 gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~ 273 (448)
T PRK12331 236 GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPI 273 (448)
T ss_pred CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 333334444444432 112 445555554444443
No 261
>PRK06852 aldolase; Validated
Probab=88.90 E-value=2.5 Score=35.44 Aligned_cols=64 Identities=6% Similarity=0.054 Sum_probs=48.9
Q ss_pred HHHHHHHHhc-CCeE-EEeCCCCcHHHHHHHHHHHHh-cCCCEEEEcCCCCcCCCCCH--HHHHHHHHHHH
Q psy9711 14 KIISTLRQET-KKTI-IAGTYCESTRATIDLTQKAAK-AGANAALILCPYYFQKKMTE--DLIYEHFISVA 79 (198)
Q Consensus 14 ~l~~~~~~~~-~~pv-i~gv~~~~~~~~i~~a~~a~~-~Gad~v~~~~P~y~~~~~~~--~~i~~y~~~i~ 79 (198)
+-++.+++.+ ++|| ++|=...+.++.+++++.+.+ .|+.++.+---.|..++ + ..+.+-...|.
T Consensus 219 e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~--p~~~~~~~Ai~~IV 287 (304)
T PRK06852 219 ELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL--DEAVRMCNAIYAIT 287 (304)
T ss_pred HHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC--chHHHHHHHHHHHH
Confidence 3445566777 8996 556655578899999999988 99999999998898876 6 66666665554
No 262
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=88.89 E-value=6 Score=33.67 Aligned_cols=72 Identities=7% Similarity=-0.030 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCeEEEe---CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711 14 KIISTLRQETKKTIIAG---TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII 88 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~g---v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l 88 (198)
+.++.+.+. +..|.+. ++..+.++.+++++.+.+.|++.+.+.-.. ... +|+++.++++.+-+.. ++||-+
T Consensus 119 ~~i~~ak~~-G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~-G~~--~P~~v~~~v~~l~~~l~~~i~ig~ 194 (337)
T PRK08195 119 QHIGLAREL-GMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSA-GAL--LPEDVRDRVRALRAALKPDTQVGF 194 (337)
T ss_pred HHHHHHHHC-CCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCC-CCC--CHHHHHHHHHHHHHhcCCCCeEEE
Confidence 344444443 4444332 345567888999999999999988776554 333 4999999999999887 588877
Q ss_pred E
Q psy9711 89 Y 89 (198)
Q Consensus 89 Y 89 (198)
|
T Consensus 195 H 195 (337)
T PRK08195 195 H 195 (337)
T ss_pred E
Confidence 6
No 263
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.87 E-value=14 Score=31.63 Aligned_cols=97 Identities=18% Similarity=0.134 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhc-CCeEEEeCCCCcHH-H-HHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHHHHHHHHHHHHcc
Q psy9711 10 EEKLKIISTLRQET-KKTIIAGTYCESTR-A-TIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADN 81 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~-~-~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~~i~~y~~~i~~~ 81 (198)
+|..+-++.+.+.+ ..|+++.++..... - .-+..+..+.+++|++-+-.+.- ..|. .+.+.+.+..+.|.+.
T Consensus 105 ~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~ 184 (352)
T PRK05437 105 PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSA 184 (352)
T ss_pred hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHh
Confidence 44888888888888 99999987775541 1 11122233445778777653221 1111 1245577889999998
Q ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 82 SPIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
+++||++=-. |..++.+....|.+.
T Consensus 185 ~~vPVivK~~----g~g~s~~~a~~l~~~ 209 (352)
T PRK05437 185 LPVPVIVKEV----GFGISKETAKRLADA 209 (352)
T ss_pred hCCCEEEEeC----CCCCcHHHHHHHHHc
Confidence 8999998653 345778888888753
No 264
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=88.74 E-value=8.7 Score=31.97 Aligned_cols=157 Identities=9% Similarity=0.000 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCC-------c-CCCCCHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYY-------F-QKKMTEDLIYEHF 75 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y-------~-~~~~~~~~i~~y~ 75 (198)
.+|.+|..+.++.+.+.+++||++=+ |-.+..++.+.++...++|+.++.+---.+ . +.-.+.++..+-.
T Consensus 55 ~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI 134 (285)
T TIGR02317 55 ITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKI 134 (285)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHH
Confidence 58999999999999887799999953 434588899999999999999999965322 1 1102478888888
Q ss_pred HHHHccC-CCCEEEEeC-CCCcccccCHHHHHHHHc---C-CCEEEEeeC-CHHHHHHHHhhcCCCCe--EEEecCh-h-
Q psy9711 76 ISVADNS-PIPVIIYNN-TFVTNIDISVDTLVKLAH---H-ENIRGVKDT-DNIKLANMANQTKDLNF--SVFAGSA-G- 144 (198)
Q Consensus 76 ~~i~~~~-~~pi~lYn~-P~~tg~~l~~~~l~~L~~---~-p~i~giK~s-d~~~~~~~~~~~~~~~~--~v~~G~d-~- 144 (198)
+...++. +.+++|==- -......+ .+.+.|... - -..+.+--. +...+.++.+ ..+..+ .+..+.. .
T Consensus 135 ~Aa~~a~~~~d~~IiARTDa~~~~g~-deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~-~i~~Pl~~n~~~~~~~p~ 212 (285)
T TIGR02317 135 AAAVDAKRDEDFVIIARTDARAVEGL-DAAIERAKAYVEAGADMIFPEALTSLEEFRQFAK-AVKVPLLANMTEFGKTPL 212 (285)
T ss_pred HHHHHhccCCCEEEEEEcCcccccCH-HHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-hcCCCEEEEeccCCCCCC
Confidence 8888766 455665311 11111122 356776652 1 133333222 5666666653 233334 3343321 1
Q ss_pred -hHHHHhhcCCCeEEeccccc
Q psy9711 145 -YLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 145 -~~~~~l~~G~~G~is~~~n~ 164 (198)
..-..-.+|.+=++-+...+
T Consensus 213 ~s~~eL~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 213 FTADELREAGYKMVIYPVTAF 233 (285)
T ss_pred CCHHHHHHcCCcEEEEchHHH
Confidence 23345568888666665433
No 265
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=88.74 E-value=5 Score=33.41 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=62.3
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCC------------CcHHHHHHHHHHHHhcCCCEEEEcCCC----C
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYC------------ESTRATIDLTQKAAKAGANAALILCPY----Y 61 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~------------~~~~~~i~~a~~a~~~Gad~v~~~~P~----y 61 (198)
+..|+.+|-.+..+.+++.+ +++|= -.+++ ++.+++.+ ++++.|+|.+.+.--. |
T Consensus 108 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~---Fv~~TgvD~LAvaiGt~HG~Y 184 (286)
T PRK08610 108 ASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQE---LVEKTGIDALAPALGSVHGPY 184 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHH---HHHHHCCCEEEeecccccccc
Confidence 45789999999999999998 66652 22321 23344444 4457799988877411 2
Q ss_pred c-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 62 F-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 62 ~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
- .|..+ ++-.++|.+++++|++++= |..++.+.+.+..+..
T Consensus 185 ~~~p~Ld----~~~L~~I~~~~~vPLVLHG-----gSG~~~e~~~~ai~~G 226 (286)
T PRK08610 185 KGEPKLG----FKEMEEIGLSTGLPLVLHG-----GTGIPTKDIQKAIPFG 226 (286)
T ss_pred CCCCCCC----HHHHHHHHHHHCCCEEEeC-----CCCCCHHHHHHHHHCC
Confidence 1 12211 4556677778899999854 4557888888887543
No 266
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=88.65 E-value=3.1 Score=33.98 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
..++..++..++||+++.|=.+..| +..|.++|+|+|++..-..-..+ +.++.+-|+.-.+
T Consensus 179 ~~l~~i~e~~~vpVivdAGIgt~sD----a~~AmElGaDgVL~nSaIakA~d--P~~mA~a~~~AV~ 239 (267)
T CHL00162 179 LNLQIIIENAKIPVIIDAGIGTPSE----ASQAMELGASGVLLNTAVAQAKN--PEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHHHHcCCCcEEEeCCcCCHHH----HHHHHHcCCCEEeecceeecCCC--HHHHHHHHHHHHH
Confidence 3566777766899999877655555 45678999999999988775554 8888877765443
No 267
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=88.65 E-value=3.4 Score=30.99 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=52.2
Q ss_pred HHHHHHhcCCeEEEeCCCCcHHHHHH-HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCC
Q psy9711 16 ISTLRQETKKTIIAGTYCESTRATID-LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTF 93 (198)
Q Consensus 16 ~~~~~~~~~~pvi~gv~~~~~~~~i~-~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~ 93 (198)
++...+..++|+++++...+..+.+. .++.+.++|+|++.+.....+. ++...++.+.+.+.. ++|+++.-.+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~----~~~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 49 LKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL----AREDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred HHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH----HHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34444433889999988777666553 3688899999999887544221 566777888888776 78988876653
No 268
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=88.53 E-value=5.9 Score=33.01 Aligned_cols=101 Identities=9% Similarity=0.133 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeE---EEeCCCCcHH-----------HHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTI---IAGTYCESTR-----------ATIDLTQKAAKAGANAALILCPY---YFQ 63 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pv---i~gv~~~~~~-----------~~i~~a~~a~~~Gad~v~~~~P~---y~~ 63 (198)
+..|+.+|-.+..+.+++.+ ++.| +-.+++.... +.-+-.+++++.|+|.+.+.--. .++
T Consensus 108 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~ 187 (288)
T TIGR00167 108 GSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYK 187 (288)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccC
Q ss_pred CCCCHH-HHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 64 KKMTED-LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 64 ~~~~~~-~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
.. +. ==++-.++|.+.+++|+++ ..|..++.+.+.+..++.
T Consensus 188 ~~--p~~Ld~~~L~~I~~~v~vPLVl-----HGgSG~~~e~~~~ai~~G 229 (288)
T TIGR00167 188 GE--PKGLDFERLEEIQKYVNLPLVL-----HGGSGIPDEEIKKAISLG 229 (288)
T ss_pred CC--CCccCHHHHHHHHHHhCCCEEE-----eCCCCCCHHHHHHHHHcC
No 269
>PRK04302 triosephosphate isomerase; Provisional
Probab=88.38 E-value=3.1 Score=33.08 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
-+++.-.++++.+.+.. ++||++|-|= ++.+.++. +.+.|+|++++..-..-..+ ...+.+-|
T Consensus 155 ~~~~~i~~~~~~ir~~~~~~pvi~GggI-~~~e~~~~---~~~~gadGvlVGsa~l~~~~--~~~~~~~~ 218 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVNPDVKVLCGAGI-STGEDVKA---ALELGADGVLLASGVVKAKD--PEAALRDL 218 (223)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEECCC-CCHHHHHH---HHcCCCCEEEEehHHhCCcC--HHHHHHHH
Confidence 34666677777787766 8999998654 45544444 45789999999877765554 66555544
No 270
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=88.36 E-value=2.6 Score=34.06 Aligned_cols=153 Identities=10% Similarity=0.012 Sum_probs=92.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeC--C-CCcHHHHHHHHHHHHhcCCCEEEEcCCC--Cc-CCCCCHHHHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGT--Y-CESTRATIDLTQKAAKAGANAALILCPY--YF-QKKMTEDLIYEHFISV 78 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv--~-~~~~~~~i~~a~~a~~~Gad~v~~~~P~--y~-~~~~~~~~i~~y~~~i 78 (198)
-.||.+|..+.++.+++.+.+||++=. | +++..++.+.++...++|+.++.+---. +. +.-.+.++..+-.+..
T Consensus 50 ~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa 129 (238)
T PF13714_consen 50 GLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAA 129 (238)
T ss_dssp S-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHH
Confidence 468999999999999988899999953 4 3348899999999999999999997651 11 1113588999999998
Q ss_pred HccC-CCCEEEEeCCCCccccc-----CHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEecChhh-H
Q psy9711 79 ADNS-PIPVIIYNNTFVTNIDI-----SVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAGSAGY-L 146 (198)
Q Consensus 79 ~~~~-~~pi~lYn~P~~tg~~l-----~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G~d~~-~ 146 (198)
.++. +..++| |- ||-.-+ -.+.++|... --..-++=-. +.+.+.++.+.. +-.+.+..+.+.. .
T Consensus 130 ~~a~~~~~~~I-~A--RTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~-~~Pl~v~~~~~~~~~ 205 (238)
T PF13714_consen 130 VDARRDPDFVI-IA--RTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAV-DGPLNVNPGPGTLSA 205 (238)
T ss_dssp HHHHSSTTSEE-EE--EECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHH-SSEEEEETTSSSS-H
T ss_pred HHhccCCeEEE-EE--eccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhc-CCCEEEEcCCCCCCH
Confidence 8766 345333 22 443322 1355666652 1222222222 555666666433 3446666643332 3
Q ss_pred HHHhhcCCCeEEecc
Q psy9711 147 LSGLLVGCAGGINAL 161 (198)
Q Consensus 147 ~~~l~~G~~G~is~~ 161 (198)
-..-.+|..-++-+.
T Consensus 206 ~eL~~lGv~~v~~~~ 220 (238)
T PF13714_consen 206 EELAELGVKRVSYGN 220 (238)
T ss_dssp HHHHHTTESEEEETS
T ss_pred HHHHHCCCcEEEEcH
Confidence 344568877665554
No 271
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=88.36 E-value=12 Score=30.25 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeC------CCCcH-------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH---H
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGT------YCEST-------RATIDLTQKAAKAGANAALILCPYYFQKKMTE---D 69 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv------~~~~~-------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~---~ 69 (198)
.+|.++..++-+...+. ++++.++. .+.+. +...+.++.|+++|++.+.+.+.++.... .+ +
T Consensus 41 ~~~~~~~~~l~~~~~~~-gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~-~e~~~~ 118 (273)
T smart00518 41 RLSEETAEKFKEALKEN-NIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQS-KEEALN 118 (273)
T ss_pred CCCHHHHHHHHHHHHHc-CCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCC-HHHHHH
Confidence 47777777777766554 56655532 12111 12344567788999998888776653222 12 3
Q ss_pred HHHHHHHHHHcc-CCCCEEEEeCCCCc-ccccCHHHHHHHHc-C---CCEEEEeeC
Q psy9711 70 LIYEHFISVADN-SPIPVIIYNNTFVT-NIDISVDTLVKLAH-H---ENIRGVKDT 119 (198)
Q Consensus 70 ~i~~y~~~i~~~-~~~pi~lYn~P~~t-g~~l~~~~l~~L~~-~---p~i~giK~s 119 (198)
.+.+.++++++. .++.+.+=|.|... ...-+++.+.++.+ + ||+--+=|.
T Consensus 119 ~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v~~~~~~g~~lD~ 174 (273)
T smart00518 119 RIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEIIDLIKELDRIGVCIDT 174 (273)
T ss_pred HHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHHHHhcCCCCCeEEEEEc
Confidence 445577777764 36888888876432 22236777888773 3 565554444
No 272
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.35 E-value=12 Score=30.04 Aligned_cols=151 Identities=12% Similarity=0.004 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHhc--CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.+.-.+.++..+++. +.| +++|+|+--+.+ +++.|.++|++.++ +|.+ ..++.++-+ ..++
T Consensus 49 ~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e---~a~~a~~aGA~FiV--sP~~------~~~v~~~~~----~~~i 113 (222)
T PRK07114 49 RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAA---TAALYIQLGANFIV--TPLF------NPDIAKVCN----RRKV 113 (222)
T ss_pred CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHH---HHHHHHHcCCCEEE--CCCC------CHHHHHHHH----HcCC
Confidence 3334445555555433 334 788988766554 45668889999665 4543 556666644 4455
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHHhhcCCCCeEEE--ecCh---hhHHHHhhcCC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVF--AGSA---GYLLSGLLVGC 154 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~~~~~~~~~~v~--~G~d---~~~~~~l~~G~ 154 (198)
|++ | |. +||..+.+-.+. +...+|.= .+..+..+. .- -|+..++ .|-+ +.+...+..|+
T Consensus 114 ~~i----P---G~-~TpsEi~~A~~~-Ga~~vKlFPA~~~G~~~ikal~-~p-~p~i~~~ptGGV~~~~~n~~~yl~aGa 182 (222)
T PRK07114 114 PYS----P---GC-GSLSEIGYAEEL-GCEIVKLFPGSVYGPGFVKAIK-GP-MPWTKIMPTGGVEPTEENLKKWFGAGV 182 (222)
T ss_pred CEe----C---CC-CCHHHHHHHHHC-CCCEEEECcccccCHHHHHHHh-cc-CCCCeEEeCCCCCcchhcHHHHHhCCC
Confidence 553 3 43 455555444432 23446664 445555543 22 2445444 4554 36778888997
Q ss_pred CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
.++-.| ++++|... ..++||++..+..+.+
T Consensus 183 ~avg~G-s~L~~~~~------~~~~~~~~i~~~a~~~ 212 (222)
T PRK07114 183 TCVGMG-SKLIPKEA------LAAKDYAGIEQKVREA 212 (222)
T ss_pred EEEEEC-hhhcCccc------cccccHHHHHHHHHHH
Confidence 766544 45565322 4556666655544443
No 273
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=88.29 E-value=14 Score=31.03 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=86.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCC-----CcC---CCCCHHHHHHHHHHHHccCC--CCEEEEeC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPY-----YFQ---KKMTEDLIYEHFISVADNSP--IPVIIYNN 91 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~-----y~~---~~~~~~~i~~y~~~i~~~~~--~pi~lYn~ 91 (198)
..|+++++.+++.++..+.++.+++.|+|++=+- .|. +.. .-.+++-+.+-.+++-++++ +||.+=-.
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 6899999999999999999999999999999876 343 111 00247788888899888874 89998664
Q ss_pred CCCcccccCHHHHHHHHcCCCEEEEee---------C----CHHHHHHHHhhcCCCCeEE-EecChh---hHHHHh-hcC
Q psy9711 92 TFVTNIDISVDTLVKLAHHENIRGVKD---------T----DNIKLANMANQTKDLNFSV-FAGSAG---YLLSGL-LVG 153 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~~p~i~giK~---------s----d~~~~~~~~~~~~~~~~~v-~~G~d~---~~~~~l-~~G 153 (198)
++....+...+....|.+. ++..+-. + |+..+.++. +.. ++.| .+|.=. .....+ ..|
T Consensus 142 ~g~~~~~~~~~~a~~l~~~-Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik-~~~--~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQA-GATELVVHGRTKEDGYRAEHINWQAIGEIR-QRL--TIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred CCCCCchHHHHHHHHHHhc-CCCEEEECCCCCccCCCCCcccHHHHHHHH-hhc--CCcEEEeCCcCCHHHHHHHHhccC
Confidence 4322112222333333332 1222211 1 344455554 222 3444 344211 233334 368
Q ss_pred CCeEEeccccc-chHHHHHH
Q psy9711 154 CAGGINALSAV-LGGPICEL 172 (198)
Q Consensus 154 ~~G~is~~~n~-~P~~~~~l 172 (198)
+||++-|-+.+ -|.++.++
T Consensus 218 ~DgVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 218 CDAVMIGRGALNIPNLSRVV 237 (312)
T ss_pred CCEEEEcHHhHhCcHHHHHh
Confidence 99999887754 37666554
No 274
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=88.24 E-value=11 Score=31.75 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 12 KLKIISTLRQETKKTIIAG-TYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
..+.++.+++..++||++= ++.. .+.+.++.++++|+|++.+..
T Consensus 166 ~~~~i~~l~~~~~vPVivK~~g~g---~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 166 WLERIEELVKALSVPVIVKEVGFG---ISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCC---CCHHHHHHHHHcCCCEEEECC
Confidence 4467777777669999983 3332 225777888899999999975
No 275
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=88.08 E-value=8.7 Score=32.57 Aligned_cols=96 Identities=18% Similarity=0.159 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhc-CCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHHHHHHHHHHHHcc
Q psy9711 10 EEKLKIISTLRQET-KKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADN 81 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~~i~~y~~~i~~~ 81 (198)
.|..+-.+.+.+.. ..|+++.++.....+ .-+..+..+.+++|++-+--+.. ..|. .+-+.+.+..+.|.+.
T Consensus 98 ~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~ 177 (333)
T TIGR02151 98 PETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQ 177 (333)
T ss_pred hhhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHh
Confidence 33443337777766 999999877644422 22233333444677777653221 1111 1245567889999999
Q ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 82 SPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+++||++=-. |..++.+...+|.+
T Consensus 178 ~~vPVivK~~----g~g~~~~~a~~L~~ 201 (333)
T TIGR02151 178 LSVPVIVKEV----GFGISKEVAKLLAD 201 (333)
T ss_pred cCCCEEEEec----CCCCCHHHHHHHHH
Confidence 9999998653 33468888888865
No 276
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=88.04 E-value=6.4 Score=32.61 Aligned_cols=101 Identities=10% Similarity=0.124 Sum_probs=61.1
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEE---EeCCCCc---------HHHHHHHHHHHHhcCCCEEEEcCCC---CcCC-
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTII---AGTYCES---------TRATIDLTQKAAKAGANAALILCPY---YFQK- 64 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi---~gv~~~~---------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~~- 64 (198)
+..|+.+|-.+..+.+++.+ ++.|= -.+++.. ..+.-+-.+++++.|+|.+.+.--. .++.
T Consensus 100 ~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~ 179 (276)
T cd00947 100 GSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGG 179 (276)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCC
Confidence 46789999999999999988 55552 2232211 0112223344556799988876422 1111
Q ss_pred CCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 65 KMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 65 ~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
. +.==++-.++|.+.+++|++++= |..++.+.+.+..+..
T Consensus 180 ~--p~L~~~~L~~i~~~~~vPLVlHG-----gSG~~~e~~~~ai~~G 219 (276)
T cd00947 180 E--PKLDFDRLKEIAERVNVPLVLHG-----GSGIPDEQIRKAIKLG 219 (276)
T ss_pred C--CccCHHHHHHHHHHhCCCEEEeC-----CCCCCHHHHHHHHHcC
Confidence 1 22123456777777789999853 4567888888887543
No 277
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=87.99 E-value=14 Score=30.72 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=40.4
Q ss_pred HHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 13 LKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
.+.++.+++.. ++++.+=+ +..+.+++++.++..++.|++.+ --|+- +. + .+.++++.+++++||..-.
T Consensus 165 ~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i--EeP~~--~~--d---~~~~~~L~~~~~ipIa~~E 235 (316)
T cd03319 165 IERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELI--EQPVP--AG--D---DDGLAYLRDKSPLPIMADE 235 (316)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE--ECCCC--CC--C---HHHHHHHHhcCCCCEEEeC
Confidence 34444444443 34444422 33345555555555555544322 23331 11 1 1234445555556655421
Q ss_pred CCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 91 NTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 91 ~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
.-.+++.+.++.+ .-.++-+|-+
T Consensus 236 ------~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 236 ------SCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred ------CCCCHHHHHHHHhcCCCCEEEEecc
Confidence 1234455555553 2345555544
No 278
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=87.87 E-value=2.8 Score=34.70 Aligned_cols=63 Identities=6% Similarity=0.090 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
++++.+++..++||+ ...|+-.+.+-+. .+.+.||+++++..-.+...+ +....+.|......
T Consensus 184 elLk~l~~~~~iPVV~iAeGGI~Tpena~---~v~e~GAdgVaVGSAI~~a~d--P~~~tk~f~~ai~~ 247 (283)
T cd04727 184 ELVKETAKLGRLPVVNFAAGGVATPADAA---LMMQLGADGVFVGSGIFKSEN--PEKRARAIVEAVTH 247 (283)
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHH---HHHHcCCCEEEEcHHhhcCCC--HHHHHHHHHHHHHh
Confidence 567777776689997 5777764444333 334689999999988876665 88888888777654
No 279
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=87.86 E-value=16 Score=31.18 Aligned_cols=145 Identities=11% Similarity=0.136 Sum_probs=81.3
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCC-----------------CCHHHHHHH----HHH
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKK-----------------MTEDLIYEH----FIS 77 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~-----------------~~~~~i~~y----~~~ 77 (198)
|.-||+| ++-.+.+.+++.|+..++++.. -++++--||.||- ..-++=+.. ..+
T Consensus 52 rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~i~~GL~~~R~ll~~ 131 (348)
T PRK12756 52 RLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYRVNHGLELARKLLLQ 131 (348)
T ss_pred ceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 7788888 7778899999999999988754 4556666777772 111122223 333
Q ss_pred HHccCCCCEEE--Ee---------------CCCCcccccCHHHHHHHH-cCCCEEEEeeC---CHHHH-HHHHhhcCCCC
Q psy9711 78 VADNSPIPVII--YN---------------NTFVTNIDISVDTLVKLA-HHENIRGVKDT---DNIKL-ANMANQTKDLN 135 (198)
Q Consensus 78 i~~~~~~pi~l--Yn---------------~P~~tg~~l~~~~l~~L~-~~p~i~giK~s---d~~~~-~~~~~~~~~~~ 135 (198)
| ...++|+.- -| ++.+ ........+++ ...--||+|.+ ++.-. -.+. ....+.
T Consensus 132 i-~~~GlP~atE~ld~~~~qY~~DliSwgaIGAR---t~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~-aa~~~H 206 (348)
T PRK12756 132 I-NELGLPTATEFLDMVTGQYIADLISWGAIGAR---TTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIR-AARASH 206 (348)
T ss_pred H-HHcCCceeehhcccccHHHHHHHHhhhhhccc---cccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHH-HHhCCC
Confidence 3 456788762 11 1222 12334567777 58889999999 44332 2333 233333
Q ss_pred eEEEecChhhH----------HHHhhcCCCeEEecccccchHHHHHHHHHHHc
Q psy9711 136 FSVFAGSAGYL----------LSGLLVGCAGGINALSAVLGGPICELYDLAKA 178 (198)
Q Consensus 136 ~~v~~G~d~~~----------~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~ 178 (198)
--+..+.++.. ......|+. ..|+.++-+.+..+.+++
T Consensus 207 ~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~-----~PNY~~~~v~~a~~~l~~ 254 (348)
T PRK12756 207 MFLSPDKDGQMTIYQTSGNPYGHIIMRGGK-----KPNYHAEDIAAACDTLRE 254 (348)
T ss_pred eeEeeCCCCcEEEEEcCCCCCeEEEeeCCC-----CCCCCHHHHHHHHHHHHH
Confidence 22222222211 111233432 268888777777666654
No 280
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=87.77 E-value=3.7 Score=34.41 Aligned_cols=62 Identities=21% Similarity=0.094 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
++.++.++++|+|.+.+...--.... .+..-.....++.+.+++||+. .|---+.+.+.+..
T Consensus 119 ~~~a~~a~~~GaD~Ivv~g~eagGh~-g~~~~~~ll~~v~~~~~iPvia------aGGI~~~~~~~~al 180 (307)
T TIGR03151 119 VALAKRMEKAGADAVIAEGMESGGHI-GELTTMALVPQVVDAVSIPVIA------AGGIADGRGMAAAF 180 (307)
T ss_pred HHHHHHHHHcCCCEEEEECcccCCCC-CCCcHHHHHHHHHHHhCCCEEE------ECCCCCHHHHHHHH
Confidence 46678899999999999765211110 0112367777888888999886 33334555554444
No 281
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=87.66 E-value=3.5 Score=32.72 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=8.1
Q ss_pred HHHHHHHHhcCCCEEEEc
Q psy9711 40 IDLTQKAAKAGANAALIL 57 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~ 57 (198)
.+.++.+++.|++.+++.
T Consensus 149 ~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 344444444444444443
No 282
>COG4018 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.66 E-value=5.4 Score=33.93 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=69.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
+|.+.-..+|-+++++.+.+.. ++.-|.+|++ ..++.+.-.+.+.+.++|..++-.-.|... .+.+-+|-++|+.
T Consensus 198 aE~HAAPLeEmk~VaEtArk~GkGveaI~hvgD-GyDdli~G~kA~ve~~vDvfvvEGgPFNrA---~dRL~AFa~Avaa 273 (505)
T COG4018 198 AEAHAAPLEEMKRVAETARKSGKGVEAILHVGD-GYDDLIDGLKAAVEEVVDVFVVEGGPFNRA---EDRLSAFARAVAA 273 (505)
T ss_pred cccccCCHHHHHHHHHHHHHhCCCceeEEEecC-CcHHHHHHHHHHHHhcCcEEEEcCCCcchh---hHHHHHHHHHHHh
Confidence 4667778899999999999998 8999999997 799999999999999999988886666654 6778888888875
Q ss_pred cC---CCCEEEEe
Q psy9711 81 NS---PIPVIIYN 90 (198)
Q Consensus 81 ~~---~~pi~lYn 90 (198)
+- +-.|+.-|
T Consensus 274 ~Ril~pGkvVaTN 286 (505)
T COG4018 274 CRILAPGKVVATN 286 (505)
T ss_pred heeccCCcEEeec
Confidence 32 55676655
No 283
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=87.61 E-value=1.6 Score=34.82 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=42.1
Q ss_pred EEEeCC-CCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711 27 IIAGTY-CESTRATIDLTQKAAKAGANAALILCPYYF--QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 103 (198)
Q Consensus 27 vi~gv~-~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~ 103 (198)
.++|++ ..+.+++ ..|.+.|+|.+.+.| .|. ++. +...-.+.++.+++.+++||+-- .| ++++.
T Consensus 111 ~iiG~s~~~s~~~a----~~A~~~gaDYv~~Gp-v~t~tK~~-~~p~gl~~l~~~~~~~~iPvvAI-----GG--I~~~n 177 (221)
T PRK06512 111 MIVGFGNLRDRHGA----MEIGELRPDYLFFGK-LGADNKPE-AHPRNLSLAEWWAEMIEIPCIVQ-----AG--SDLAS 177 (221)
T ss_pred CEEEecCCCCHHHH----HHhhhcCCCEEEECC-CCCCCCCC-CCCCChHHHHHHHHhCCCCEEEE-----eC--CCHHH
Confidence 356765 3344443 346788999998875 441 111 11122345566777778998762 23 67888
Q ss_pred HHHHHcC
Q psy9711 104 LVKLAHH 110 (198)
Q Consensus 104 l~~L~~~ 110 (198)
+.++.+.
T Consensus 178 ~~~~~~~ 184 (221)
T PRK06512 178 AVEVAET 184 (221)
T ss_pred HHHHHHh
Confidence 8888753
No 284
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=87.45 E-value=16 Score=30.80 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEeCCCCcHH--HHHHHHHHHHhcCCCEEEEcCCC---CcCCC--CCHHHHHHHHHHHHc
Q psy9711 9 EEEKLKIISTLRQET-KKTIIAGTYCESTR--ATIDLTQKAAKAGANAALILCPY---YFQKK--MTEDLIYEHFISVAD 80 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~--~~i~~a~~a~~~Gad~v~~~~P~---y~~~~--~~~~~i~~y~~~i~~ 80 (198)
..|+.+-++.+.+.. ..|+++.++..... +.-+..+..+.+++|++-+-... ...+. .+.+.+.+-.+.+.+
T Consensus 96 ~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~ 175 (326)
T cd02811 96 DPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVK 175 (326)
T ss_pred ChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 345667778887777 79999988765421 12222233334577877765321 11111 124456678889998
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
.+++||++=-. |...+.+...+|.+.
T Consensus 176 ~~~vPVivK~~----g~g~s~~~a~~l~~~ 201 (326)
T cd02811 176 ALSVPVIVKEV----GFGISRETAKRLADA 201 (326)
T ss_pred hcCCCEEEEec----CCCCCHHHHHHHHHc
Confidence 88999998653 335778888888753
No 285
>PRK12928 lipoyl synthase; Provisional
Probab=87.42 E-value=8.7 Score=31.98 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 7 STEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
.|.+++.++++.+.+.. +.-+|+|. +.+-++.++..+.+.++|+|.+-+.
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~ 239 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIG 239 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 46777777777777753 44567777 5677777788888888887777664
No 286
>PLN02591 tryptophan synthase
Probab=87.42 E-value=14 Score=30.17 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=47.5
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccCCCCEE--EE
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNSPIPVI--IY 89 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~~~pi~--lY 89 (198)
++-.|.++.+.+++.++...+.|||.+=+.-|+-.+.. .+-+++++..+++.+..+.|++ -|
T Consensus 7 yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y 86 (250)
T PLN02591 7 YITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY 86 (250)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence 34568889999999999999999999999998854422 2334566666666656677844 45
Q ss_pred eCC
Q psy9711 90 NNT 92 (198)
Q Consensus 90 n~P 92 (198)
-||
T Consensus 87 ~N~ 89 (250)
T PLN02591 87 YNP 89 (250)
T ss_pred ccH
Confidence 555
No 287
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.41 E-value=19 Score=32.28 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711 38 ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116 (198)
Q Consensus 38 ~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~gi 116 (198)
+..+.++...++|+|.+.+-.+. .. .+.+.+..+.+.... ++||++ |.-.+.+...+|.+. .+.+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~---g~--~~~vl~~i~~i~~~~p~~~vi~-------g~v~t~e~a~~l~~a-Gad~i 294 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAH---GH--SEGVLDRVREIKAKYPDVQIIA-------GNVATAEAARALIEA-GADAV 294 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCC---Cc--chhHHHHHHHHHhhCCCCCEEE-------eccCCHHHHHHHHHc-CCCEE
Confidence 56889999999999977665543 21 456778888888777 799988 556889999999864 22233
Q ss_pred eeC------------------CHHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccc
Q psy9711 117 KDT------------------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 117 K~s------------------d~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~ 162 (198)
|.+ ++.-+.+..+.....++.|+. |.- .....++.+|++.++.|..
T Consensus 295 ~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~ 362 (486)
T PRK05567 295 KVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSM 362 (486)
T ss_pred EECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECcc
Confidence 221 112222223211223466665 432 3578899999999987765
No 288
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.36 E-value=7.7 Score=30.79 Aligned_cols=83 Identities=11% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEEeC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNN 91 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lYn~ 91 (198)
.++++.+.+. ++|++.|+.+. .| +..|.+.|+|.+-+-| .+ .-+ .+|.+.+..-.+ +|++-
T Consensus 99 ~~v~~~~~~~-~i~~iPG~~T~--~E----~~~A~~~Gad~vklFP-----a~--~~G-~~~ik~l~~~~p~ip~~a--- 160 (213)
T PRK06552 99 RETAKICNLY-QIPYLPGCMTV--TE----IVTALEAGSEIVKLFP-----GS--TLG-PSFIKAIKGPLPQVNVMV--- 160 (213)
T ss_pred HHHHHHHHHc-CCCEECCcCCH--HH----HHHHHHcCCCEEEECC-----cc--cCC-HHHHHHHhhhCCCCEEEE---
Confidence 3455555444 89999988753 33 3455678999999733 11 112 467777776664 77663
Q ss_pred CCCcccccCHHHHHHHHcCC-CEEEEe
Q psy9711 92 TFVTNIDISVDTLVKLAHHE-NIRGVK 117 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~~p-~i~giK 117 (198)
+| .++.+.+.+..+.+ +.+++=
T Consensus 161 ---tG-GI~~~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 161 ---TG-GVNLDNVKDWFAAGADAVGIG 183 (213)
T ss_pred ---EC-CCCHHHHHHHHHCCCcEEEEc
Confidence 33 35677888887765 555543
No 289
>PTZ00413 lipoate synthase; Provisional
Probab=87.33 E-value=7 Score=33.94 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHh-c-C----CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711 7 STEEEKLKIISTLRQE-T-K----KTIIAGTYCESTRATIDLTQKAAKAGANAALI 56 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~-~-~----~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~ 56 (198)
-|.+++.++++.+.+. . + --+|+|.|. +-+|.++.++.+.++|+|-+-+
T Consensus 275 atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 275 ASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred CCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHHHHHHHHHHcCCcEEee
Confidence 4789999999998876 2 3 357899775 7999999999999999998877
No 290
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=87.28 E-value=6.6 Score=35.39 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=53.3
Q ss_pred HHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC-CCCcCCC-------CCHHHHHHHHHHHHccCC
Q psy9711 14 KIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALILC-PYYFQKK-------MTEDLIYEHFISVADNSP 83 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~-------~~~~~i~~y~~~i~~~~~ 83 (198)
+.++.+.+.. +.+||+| |.+ .+.++++.++|||++.+.- |-+...+ ..+..-+....++++..+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t------~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~ 351 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVT------MYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHG 351 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCC------HHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcC
Confidence 4566666555 6888875 543 4557788889999998751 2222211 012234555788888888
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
+||+. -.|+.-+-+..+-|+
T Consensus 352 vpVIa-----dGGI~~~~di~kAla 371 (505)
T PLN02274 352 VPVIA-----DGGISNSGHIVKALT 371 (505)
T ss_pred CeEEE-----eCCCCCHHHHHHHHH
Confidence 99876 456666666666666
No 291
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.25 E-value=6.9 Score=30.87 Aligned_cols=88 Identities=14% Similarity=0.122 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC-CCHHHHHHHHHHHHccCCCCEEE
Q psy9711 10 EEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK-MTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 10 ~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~-~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
++..++++.+.+..++++++++. +.++ ++.+.+.|+|.+.+..-.+.... .......++.+++.+.+++|++.
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~--t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia 178 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS--TLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA 178 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC--CHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE
Confidence 44455666655412566665554 2333 35666777776654221110000 00112245666666666667664
Q ss_pred EeCCCCccccc-CHHHHHHHHcC
Q psy9711 89 YNNTFVTNIDI-SVDTLVKLAHH 110 (198)
Q Consensus 89 Yn~P~~tg~~l-~~~~l~~L~~~ 110 (198)
.. .+ +++.+.++.+.
T Consensus 179 -----~G--GI~t~~~~~~~l~~ 194 (221)
T PRK01130 179 -----EG--RINTPEQAKKALEL 194 (221)
T ss_pred -----EC--CCCCHHHHHHHHHC
Confidence 12 23 56666666544
No 292
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=87.24 E-value=8.3 Score=30.74 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
++..-..++++.+.+++ +..++..-+..+.+.-.+..+.+...++|++++.+... .. -+.. ++.+ ...+
T Consensus 9 ~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~~---~~~~---i~~~-~~~~ 80 (273)
T cd06309 9 AESPWRTAETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVE-TG---WDPV---LKEA-KAAG 80 (273)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcc-cc---chHH---HHHH-HHCC
Confidence 44555566777777666 77777766666777778888888899999999975331 11 1222 3333 3468
Q ss_pred CCEEEEeCC
Q psy9711 84 IPVIIYNNT 92 (198)
Q Consensus 84 ~pi~lYn~P 92 (198)
+|++++|..
T Consensus 81 iPvV~~~~~ 89 (273)
T cd06309 81 IPVILVDRG 89 (273)
T ss_pred CCEEEEecC
Confidence 999999963
No 293
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=87.21 E-value=3.9 Score=34.71 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 15 IISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
+++.+.+. ++|+=.||.+.|+ +.+++.++.++++|.+-+.++- +.| +....++-|+.
T Consensus 115 vVe~Ak~~-g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~----K~S-dv~~~v~aYr~ 188 (361)
T COG0821 115 VVEAAKDK-GIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSV----KAS-DVQLMVAAYRL 188 (361)
T ss_pred HHHHHHHc-CCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE----EcC-CHHHHHHHHHH
Confidence 44444333 8999999988885 3457888999999999887763 443 58889999999
Q ss_pred HHccCCCCEEE
Q psy9711 78 VADNSPIPVII 88 (198)
Q Consensus 78 i~~~~~~pi~l 88 (198)
++.+++.|+=|
T Consensus 189 lA~~~dyPLHL 199 (361)
T COG0821 189 LAKRCDYPLHL 199 (361)
T ss_pred HHHhcCCCccc
Confidence 99999877644
No 294
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=87.02 E-value=8 Score=32.87 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC--CCEEEE
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP--IPVIIY 89 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~--~pi~lY 89 (198)
...+.++.+++++.+.+.|++.+.+.-.. ... +|+++.++++.+-+..+ +||-++
T Consensus 138 ~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~-G~~--~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 138 HMTPPEKLAEQAKLMESYGADCVYIVDSA-GAM--LPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEEccCC-CCC--CHHHHHHHHHHHHHhCCCCceEEEE
Confidence 44567888999999999999988776544 333 39999999999988775 788765
No 295
>PRK07695 transcriptional regulator TenI; Provisional
Probab=87.02 E-value=3.4 Score=32.18 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=43.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHH
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL 104 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l 104 (198)
.++|++..+.+ .++.+.++|+|.+++. |.+...+. .+..-.++++.+.+.+++||+. ..| ++++.+
T Consensus 96 ~~ig~s~~s~e----~a~~a~~~Gadyi~~g-~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia-----~GG--I~~~~~ 163 (201)
T PRK07695 96 LHVGYSVHSLE----EAIQAEKNGADYVVYG-HVFPTDCKKGVPARGLEELSDIARALSIPVIA-----IGG--ITPENT 163 (201)
T ss_pred CEEEEeCCCHH----HHHHHHHcCCCEEEEC-CCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE-----EcC--CCHHHH
Confidence 34566554443 4677888999998764 44332210 0111246778888878888886 233 378888
Q ss_pred HHHHcC
Q psy9711 105 VKLAHH 110 (198)
Q Consensus 105 ~~L~~~ 110 (198)
.++.+.
T Consensus 164 ~~~~~~ 169 (201)
T PRK07695 164 RDVLAA 169 (201)
T ss_pred HHHHHc
Confidence 888753
No 296
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=86.97 E-value=9.9 Score=31.87 Aligned_cols=140 Identities=17% Similarity=0.135 Sum_probs=82.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCC----------CcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPY----------YFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~----------y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
..|+++++++++.+...+-++.+.+.|+|++=+- .|. +.- .+++.+.+..+.+.+++++||-+=-
T Consensus 53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll--~~p~~~~~iv~~~~~~~~~pvsvKi- 129 (309)
T PF01207_consen 53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALL--KDPDLLAEIVKAVRKAVPIPVSVKI- 129 (309)
T ss_dssp T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGG--C-HHHHHHHHHHHHHH-SSEEEEEE-
T ss_pred ccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhh--cChHHhhHHHHhhhcccccceEEec-
Confidence 6799999999999999999999999999998775 444 111 2489999999999999999997643
Q ss_pred CCCcccccCH----HHHHHHHcCCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecChhh---HHHHhhc
Q psy9711 92 TFVTNIDISV----DTLVKLAHHENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSAGY---LLSGLLV 152 (198)
Q Consensus 92 P~~tg~~l~~----~~l~~L~~~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d~~---~~~~l~~ 152 (198)
+.|.+-+. +.+..|.+.+ +.++ +.+ |++.+.++.. ..+ =..+.+|+=.. ....+..
T Consensus 130 --R~g~~~~~~~~~~~~~~l~~~G-~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~-~~~-ipvi~NGdI~s~~d~~~~~~~ 204 (309)
T PF01207_consen 130 --RLGWDDSPEETIEFARILEDAG-VSAITVHGRTRKQRYKGPADWEAIAEIKE-ALP-IPVIANGDIFSPEDAERMLEQ 204 (309)
T ss_dssp --ESECT--CHHHHHHHHHHHHTT---EEEEECS-TTCCCTS---HHHHHHCHH-C-T-SEEEEESS--SHHHHHHHCCC
T ss_pred --ccccccchhHHHHHHHHhhhcc-cceEEEecCchhhcCCcccchHHHHHHhh-ccc-ceeEEcCccCCHHHHHHHHHh
Confidence 45555333 3333333333 5555 222 6777776653 333 22344553222 2233433
Q ss_pred -CCCeEEeccccc-chHHHHH
Q psy9711 153 -GCAGGINALSAV-LGGPICE 171 (198)
Q Consensus 153 -G~~G~is~~~n~-~P~~~~~ 171 (198)
|++|++.|-+.+ -|.++.+
T Consensus 205 tg~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 205 TGADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp H-SSEEEESHHHCC-CCHHCH
T ss_pred cCCcEEEEchhhhhcCHHhhh
Confidence 999999998865 4777764
No 297
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=86.95 E-value=2.6 Score=35.84 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
.++.++.|+.|++.||....+..-.+.++ .+.+.+.+..+.|-+.+++++++ ..| .++.+...+|++
T Consensus 86 ~eeIle~Ak~ak~~Ga~r~c~~aagr~~~-~~~~~i~~~v~~Vk~~~~le~c~-----slG-~l~~eq~~~L~~ 152 (335)
T COG0502 86 VEEILEAAKKAKAAGATRFCMGAAGRGPG-RDMEEVVEAIKAVKEELGLEVCA-----SLG-MLTEEQAEKLAD 152 (335)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEeccCCC-ccHHHHHHHHHHHHHhcCcHHhh-----ccC-CCCHHHHHHHHH
Confidence 47899999999999977766666555422 35899999999999889998887 345 788888888874
No 298
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=86.91 E-value=2.5 Score=35.89 Aligned_cols=129 Identities=10% Similarity=0.075 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHhcC-------CeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQETK-------KTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~-------~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..+.-.++++.+.+..+ +||++=++.+-+ ++..+.++.+++.|+|++.+..-.+.. + +
T Consensus 187 ~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~-----~--------~- 252 (335)
T TIGR01036 187 YKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSR-----S--------L- 252 (335)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCcc-----c--------c-
Confidence 45666677888776653 999999987655 478889999999999999998755311 0 0
Q ss_pred ccCCCCEEEEeCCC---CcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhc
Q psy9711 80 DNSPIPVIIYNNTF---VTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLV 152 (198)
Q Consensus 80 ~~~~~pi~lYn~P~---~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~ 152 (198)
+- .|. ..| .+|-..+..++ ...+.++. +..+.++.+. .|-. +.....+.+
T Consensus 253 --------~~-~~~~~~~~G-GlSG~~i~p~a------------l~~v~~~~-~~~~~~ipiig~GGI~~~~da~e~l~a 309 (335)
T TIGR01036 253 --------VQ-GPKNSDETG-GLSGKPLQDKS------------TEIIRRLY-AELQGRLPIIGVGGISSAQDALEKIRA 309 (335)
T ss_pred --------cc-CccccCCCC-cccCHHHHHHH------------HHHHHHHH-HHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 00 011 111 24444444442 23333333 2233445544 2322 246677888
Q ss_pred CCCeEEecccccc--hHHHHHHH
Q psy9711 153 GCAGGINALSAVL--GGPICELY 173 (198)
Q Consensus 153 G~~G~is~~~n~~--P~~~~~l~ 173 (198)
|++.+..+++.+. |..+.++-
T Consensus 310 GA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 310 GASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred CCcHHHhhHHHHHhCchHHHHHH
Confidence 9998887877655 76665553
No 299
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.87 E-value=8.4 Score=30.56 Aligned_cols=75 Identities=9% Similarity=0.046 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
-..++++.+.+++ +..++...+..+.+...+..+.+...++|++++.+.. .. ...+..+.+ ...++|++
T Consensus 14 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~~------~~~~~l~~~-~~~~iPvV 85 (275)
T cd06317 14 YQTTYNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTD-GQ------AYIPGLRKA-KQAGIPVV 85 (275)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCC-cc------ccHHHHHHH-HHCCCcEE
Confidence 3344445544444 6666666666778888888998889999999886532 11 112233443 34689999
Q ss_pred EEeCCC
Q psy9711 88 IYNNTF 93 (198)
Q Consensus 88 lYn~P~ 93 (198)
++|.+.
T Consensus 86 ~~~~~~ 91 (275)
T cd06317 86 ITNSNI 91 (275)
T ss_pred EeCCCC
Confidence 998754
No 300
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=86.74 E-value=9.7 Score=32.87 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
.+|.+. ++.+++..++||++ ||++ .+-++.+.++|+|++.+..-
T Consensus 214 ~~~w~~----i~~l~~~~~~PvivKGv~~------~eda~~a~~~Gvd~I~VS~H 258 (367)
T TIGR02708 214 KLSPRD----IEEIAGYSGLPVYVKGPQC------PEDADRALKAGASGIWVTNH 258 (367)
T ss_pred CCCHHH----HHHHHHhcCCCEEEeCCCC------HHHHHHHHHcCcCEEEECCc
Confidence 456643 44444444899988 6654 66778888999999998853
No 301
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=86.72 E-value=2.9 Score=36.34 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ 63 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~ 63 (198)
-+++.-.++++.+.+..++||++=.+. +..+..+.++.+.+.|+|++.+..-....
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vKLsP-n~t~i~~ia~aa~~~Gadgi~liNT~~~~ 220 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAKMTP-NITDITQPARVALKSGCEGVAAINTIMSV 220 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEEeCC-ChhhHHHHHHHHHHhCCCEEEEecccCcc
Confidence 455556667777765559999999985 56678899999999999999999766543
No 302
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=86.67 E-value=11 Score=30.41 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+..-..++++-+.+++ +..+++..+..+.++..+..+.+.+.++|++++.+.. .+.....++.+. ..++
T Consensus 10 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~-------~~~~~~~l~~l~-~~~i 81 (288)
T cd01538 10 TEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVD-------GEALASAVEKAA-DAGI 81 (288)
T ss_pred CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------hhhHHHHHHHHH-HCCC
Confidence 3444556666666655 6777776666677777888888889999999987532 222334555544 3589
Q ss_pred CEEEEeCC
Q psy9711 85 PVIIYNNT 92 (198)
Q Consensus 85 pi~lYn~P 92 (198)
|++..|.+
T Consensus 82 pvV~~~~~ 89 (288)
T cd01538 82 PVIAYDRL 89 (288)
T ss_pred CEEEECCC
Confidence 99999875
No 303
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=86.66 E-value=2.1 Score=35.12 Aligned_cols=164 Identities=21% Similarity=0.165 Sum_probs=99.4
Q ss_pred CeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-C----
Q psy9711 25 KTIIAG-TYCESTRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-T---- 92 (198)
Q Consensus 25 ~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P---- 92 (198)
..|++| ++-.|-+..++-|+..+++|++.+--. +||-+..- .++-+.+.++.++.+++|++-=-. |
T Consensus 46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl--ge~gL~~l~~a~~~~Gl~vvtEvm~~~~~e 123 (286)
T COG2876 46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL--GEEGLKLLKRAADETGLPVVTEVMDVRDVE 123 (286)
T ss_pred eEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc--CHHHHHHHHHHHHHcCCeeEEEecCHHHHH
Confidence 456676 677788999999999999999987654 36555443 667789999999999999985311 0
Q ss_pred ---------CC-cccccCHHHHHHHHc-----------------------------CCCEEEEeeC------------CH
Q psy9711 93 ---------FV-TNIDISVDTLVKLAH-----------------------------HENIRGVKDT------------DN 121 (198)
Q Consensus 93 ---------~~-tg~~l~~~~l~~L~~-----------------------------~p~i~giK~s------------d~ 121 (198)
+. .++.=.-++++++-+ ++||+=+--. |+
T Consensus 124 ~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi 203 (286)
T COG2876 124 AAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDI 203 (286)
T ss_pred HHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceech
Confidence 00 011111223333332 3344322111 22
Q ss_pred HHHHHHHhhcCCCCeEEE------ecChhhH----HHHhhcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 122 IKLANMANQTKDLNFSVF------AGSAGYL----LSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 122 ~~~~~~~~~~~~~~~~v~------~G~d~~~----~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
..+.. +++. ..+.|+ +|...+. ..++..|+||.+-- +.|+.-..+-++-++=+.++-.++.+.+
T Consensus 204 ~aV~~-~kq~--THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE---VHp~P~~AlsD~~Qql~~~~f~~l~~~~ 277 (286)
T COG2876 204 SAVPI-LKQE--THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE---VHPDPEKALSDAKQQLTPEEFEELVKEL 277 (286)
T ss_pred HHHHH-HHhh--cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE---ecCCcccccCcccccCCHHHHHHHHHHH
Confidence 22111 1111 223332 4554433 34578899999855 4888888888888888888888888877
Q ss_pred hchhh
Q psy9711 192 VKPDV 196 (198)
Q Consensus 192 ~~l~~ 196 (198)
..+.+
T Consensus 278 ~~~~~ 282 (286)
T COG2876 278 RALAD 282 (286)
T ss_pred HHHhh
Confidence 66544
No 304
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=86.57 E-value=6.8 Score=34.96 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+.+..+++++.+.++|+|.+.+.-.. ... +|.++.+.++.+-+.+++||-+|-
T Consensus 151 t~e~~~~~a~~l~~~Gad~I~i~Dt~-G~l--~P~~v~~Lv~~lk~~~~vpI~~H~ 203 (467)
T PRK14041 151 TLEYYLEFARELVDMGVDSICIKDMA-GLL--TPKRAYELVKALKKKFGVPVEVHS 203 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcc-CCc--CHHHHHHHHHHHHHhcCCceEEEe
Confidence 45778888999999999977776444 223 388999999999888888887763
No 305
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.48 E-value=7.4 Score=30.95 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.-..++++-+.+.+ +.-+++.....+.+.-.+..+...+.++|++++.++.... ......+++.+. ..++|+
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~----~~~~~~~i~~~~-~~~ipv 86 (273)
T cd06292 12 PIFPAFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHAD----THADHSHYERLA-ERGLPV 86 (273)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCc----ccchhHHHHHHH-hCCCCE
Confidence 33455555555555 6666666666677777888899999999999998754221 223445555553 468999
Q ss_pred EEEeC
Q psy9711 87 IIYNN 91 (198)
Q Consensus 87 ~lYn~ 91 (198)
+.++.
T Consensus 87 V~i~~ 91 (273)
T cd06292 87 VLVNG 91 (273)
T ss_pred EEEcC
Confidence 99985
No 306
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=86.48 E-value=15 Score=29.37 Aligned_cols=100 Identities=14% Similarity=0.077 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEee
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD 118 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~ 118 (198)
..+..+..+++|+.+-+.+.|. |+-+.+.+| .+.++.=+++=-+|+..|..+-++.+.++.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~------T~~~~i~~~---l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~---------- 159 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPA------TPVDILDWV---LPELDLVLVMSVNPGFGGQAFIPSALDKLR---------- 159 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCC------CCHHHHHHH---HhhcCEEEEEEECCCCCCccccHHHHHHHH----------
Confidence 3444455556677777776664 133333333 334444455555677777777777766663
Q ss_pred CCHHHHHHHHhhcCCCC--eEEEecCh-hhHHHHhhcCCCeEEeccc
Q psy9711 119 TDNIKLANMANQTKDLN--FSVFAGSA-GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 119 sd~~~~~~~~~~~~~~~--~~v~~G~d-~~~~~~l~~G~~G~is~~~ 162 (198)
++++++. ..+.+ +.|=.|-. +.+.....+|++.+++|.+
T Consensus 160 ----~l~~~~~-~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 160 ----AIRKKID-ALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred ----HHHHHHH-hcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 3334432 22334 33334444 3555677899999999976
No 307
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=86.48 E-value=4.6 Score=31.61 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=55.5
Q ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEE-EeCCCCcccccCHHHHHHHHc--
Q psy9711 34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVII-YNNTFVTNIDISVDTLVKLAH-- 109 (198)
Q Consensus 34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~l-Yn~P~~tg~~l~~~~l~~L~~-- 109 (198)
.+++.-+..++.|.+.|||.+-+..++-...+...+.+.+...++.+.+ ++|+.+ +..+. ++++.+.+.++
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~-----l~~~~i~~a~ria 140 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-----LTDEEIIKACEIA 140 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCC-----CCHHHHHHHHHHH
Confidence 4466677779999999999999998863221213677888999999887 577754 33332 35666655553
Q ss_pred -CCCEEEEeeC
Q psy9711 110 -HENIRGVKDT 119 (198)
Q Consensus 110 -~p~i~giK~s 119 (198)
--..-.||-+
T Consensus 141 ~e~GaD~IKTs 151 (203)
T cd00959 141 IEAGADFIKTS 151 (203)
T ss_pred HHhCCCEEEcC
Confidence 3467778876
No 308
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.33 E-value=13 Score=29.82 Aligned_cols=75 Identities=9% Similarity=-0.106 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.=..++++.+.+++ +..++..-+..+.+...+..+.+.+.++|++++.+.. .+...+.++.+. ..++|+
T Consensus 12 ~f~~~~~~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~-------~~~~~~~i~~~~-~~~iPv 83 (272)
T cd06313 12 TWCAQGKQAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLG-------IGTLTEAVQKAI-ARGIPV 83 (272)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hHHhHHHHHHHH-HCCCcE
Confidence 33445555555555 7777777666677888899999999999999996432 222223344444 358999
Q ss_pred EEEeCC
Q psy9711 87 IIYNNT 92 (198)
Q Consensus 87 ~lYn~P 92 (198)
+++|.+
T Consensus 84 V~~~~~ 89 (272)
T cd06313 84 IDMGTL 89 (272)
T ss_pred EEeCCC
Confidence 999864
No 309
>PRK05481 lipoyl synthase; Provisional
Probab=86.28 E-value=10 Score=31.53 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc---CCCC---cCCCCCHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL---CPYY---FQKKMTEDLIYEH 74 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~---~P~y---~~~~~~~~~i~~y 74 (198)
..|.+++.++++.+.+.. +.-+|+|. +.+.++-.+..+...++|.|.+-+. +|.+ .-+...-.+-.+.
T Consensus 176 ~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-GET~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~ 254 (289)
T PRK05481 176 GADYERSLELLKRAKELHPGIPTKSGLMVGL-GETDEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDE 254 (289)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-CCCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHH
Confidence 458899999999999883 56789999 6799999999999999999988884 3333 1111112334455
Q ss_pred HHHHHccCCCCEE
Q psy9711 75 FISVADNSPIPVI 87 (198)
Q Consensus 75 ~~~i~~~~~~pi~ 87 (198)
+..++...+..-+
T Consensus 255 l~~~~~~i~~~~~ 267 (289)
T PRK05481 255 YKEIALELGFLHV 267 (289)
T ss_pred HHHHHHHcCchhe
Confidence 5555555554433
No 310
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=86.23 E-value=15 Score=29.04 Aligned_cols=136 Identities=13% Similarity=0.142 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEE-e-
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIY-N- 90 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lY-n- 90 (198)
++++.+.+.+.+|+++|-|=.+.+++ +.+.++||+.+++..-... + ++ .+++++++.+ -++++- +
T Consensus 62 ~~i~~i~~~~~~pi~~ggGI~~~ed~----~~~~~~Ga~~vvlgs~~l~--d--~~----~~~~~~~~~g~~~i~~sid~ 129 (230)
T TIGR00007 62 PVIKKIVRETGVPVQVGGGIRSLEDV----EKLLDLGVDRVIIGTAAVE--N--PD----LVKELLKEYGPERIVVSLDA 129 (230)
T ss_pred HHHHHHHHhcCCCEEEeCCcCCHHHH----HHHHHcCCCEEEEChHHhh--C--HH----HHHHHHHHhCCCcEEEEEEE
Confidence 56666666668899998776555554 4555689999987533321 1 33 3455555543 223321 1
Q ss_pred -------CCCCcccccCH-HHHHHHHcC--CCEEEE---e----eC-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHh
Q psy9711 91 -------NTFVTNIDISV-DTLVKLAHH--ENIRGV---K----DT-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGL 150 (198)
Q Consensus 91 -------~P~~tg~~l~~-~~l~~L~~~--p~i~gi---K----~s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l 150 (198)
.-.......++ +...++.+. ..++-. + .. |...+.++.+ ..+-.+..-.|.. +.+...+
T Consensus 130 ~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~-~~~ipvia~GGi~~~~di~~~~ 208 (230)
T TIGR00007 130 RGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVK-AVNVPVIASGGVSSIDDLIALK 208 (230)
T ss_pred ECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHH-hCCCCEEEeCCCCCHHHHHHHH
Confidence 01111122444 444555543 333321 1 11 5666666653 2222232222222 2344556
Q ss_pred hcCCCeEEeccc
Q psy9711 151 LVGCAGGINALS 162 (198)
Q Consensus 151 ~~G~~G~is~~~ 162 (198)
..|++|++.|.+
T Consensus 209 ~~Gadgv~ig~a 220 (230)
T TIGR00007 209 KLGVYGVIVGKA 220 (230)
T ss_pred HCCCCEEEEeHH
Confidence 789999998876
No 311
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=86.21 E-value=14 Score=30.99 Aligned_cols=172 Identities=9% Similarity=0.069 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--------CCCCCHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYYF--------QKKMTEDLIYEHF 75 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--------~~~~~~~~i~~y~ 75 (198)
.+|.+|..+.++.++..+.+||++=+ |-.+..++.+.++...++|+.++.+---.+- +.-.+.++..+-.
T Consensus 59 ~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI 138 (294)
T TIGR02319 59 FTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKI 138 (294)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHH
Confidence 68999999999999888799999954 4445666889999999999999999753321 1112478888888
Q ss_pred HHHHccC-CCCEEEEeC-CCCcccccCHHHHHHHHc---C-CCEEEEeeC--CHHHHHHHHhhcCCCCe--EEEecChh-
Q psy9711 76 ISVADNS-PIPVIIYNN-TFVTNIDISVDTLVKLAH---H-ENIRGVKDT--DNIKLANMANQTKDLNF--SVFAGSAG- 144 (198)
Q Consensus 76 ~~i~~~~-~~pi~lYn~-P~~tg~~l~~~~l~~L~~---~-p~i~giK~s--d~~~~~~~~~~~~~~~~--~v~~G~d~- 144 (198)
+...++. +-+++|-=- -.+.+..+ .+.+.|... - -.++-+ ++ +...+.++.+. .+.++ .+..|...
T Consensus 139 ~Aa~~A~~~~d~~I~ARTDa~~~~g~-deaI~Ra~aY~eAGAD~ifi-~~~~~~~ei~~~~~~-~~~P~~~nv~~~~~~p 215 (294)
T TIGR02319 139 EAAVEAREDEDFTIIARTDARESFGL-DEAIRRSREYVAAGADCIFL-EAMLDVEEMKRVRDE-IDAPLLANMVEGGKTP 215 (294)
T ss_pred HHHHHhccCCCeEEEEEecccccCCH-HHHHHHHHHHHHhCCCEEEe-cCCCCHHHHHHHHHh-cCCCeeEEEEecCCCC
Confidence 8887765 345665321 11112223 356776652 2 234444 23 66666666643 33334 45654321
Q ss_pred --hHHHHhhcCCCeEEecccccch--HHHHHHHHHHH-cCC
Q psy9711 145 --YLLSGLLVGCAGGINALSAVLG--GPICELYDLAK-AGK 180 (198)
Q Consensus 145 --~~~~~l~~G~~G~is~~~n~~P--~~~~~l~~~~~-~gd 180 (198)
.+-..-.+|.+=++-+...+.. ..+.+..+.++ +|.
T Consensus 216 ~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 216 WLTTKELESIGYNLAIYPLSGWMAAASVLRKLFTELREAGT 256 (294)
T ss_pred CCCHHHHHHcCCcEEEEcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2334456788877766554332 33444444443 443
No 312
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=86.10 E-value=14 Score=28.56 Aligned_cols=134 Identities=13% Similarity=0.060 Sum_probs=69.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.++.+.+..+.|+.+++-..+.. +.++.+.+.|+|++.+..- + .++..+.. ..+...++.+++--.|.
T Consensus 46 ~~v~~i~~~~~~~v~v~lm~~~~~---~~~~~~~~~gadgv~vh~~----~---~~~~~~~~-~~~~~~g~~~~~~~~~~ 114 (210)
T TIGR01163 46 PVLEALRKYTDLPIDVHLMVENPD---RYIEDFAEAGADIITVHPE----A---SEHIHRLL-QLIKDLGAKAGIVLNPA 114 (210)
T ss_pred HHHHHHHhcCCCcEEEEeeeCCHH---HHHHHHHHcCCCEEEEccC----C---chhHHHHH-HHHHHcCCcEEEEECCC
Confidence 344444443366776776665543 5677778999999888431 1 23333333 33344565555544332
Q ss_pred CcccccCHHHHHHHHcCCCEEEE--e------eC-CH---HHHHHHHh--hcCCCCeEE--EecCh-hhHHHHhhcCCCe
Q psy9711 94 VTNIDISVDTLVKLAHHENIRGV--K------DT-DN---IKLANMAN--QTKDLNFSV--FAGSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~p~i~gi--K------~s-d~---~~~~~~~~--~~~~~~~~v--~~G~d-~~~~~~l~~G~~G 156 (198)
-+.+.+.++...+..+.+ + .. ++ ..+.++.+ ...++++.+ -.|-. +.+...+..|++|
T Consensus 115 -----t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~gad~ 189 (210)
T TIGR01163 115 -----TPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDNARELAEAGADI 189 (210)
T ss_pred -----CCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcCCCE
Confidence 236667777644443332 1 12 22 22322221 111233334 33443 3455667899999
Q ss_pred EEecccc
Q psy9711 157 GINALSA 163 (198)
Q Consensus 157 ~is~~~n 163 (198)
++.|.+-
T Consensus 190 iivgsai 196 (210)
T TIGR01163 190 LVAGSAI 196 (210)
T ss_pred EEEChHH
Confidence 9988653
No 313
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=86.01 E-value=19 Score=30.18 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhc--CCeEEEeCCCCc---------------------------------HHHHHHHHHHHHhcCCCEEE
Q psy9711 11 EKLKIISTLRQET--KKTIIAGTYCES---------------------------------TRATIDLTQKAAKAGANAAL 55 (198)
Q Consensus 11 Er~~l~~~~~~~~--~~pvi~gv~~~~---------------------------------~~~~i~~a~~a~~~Gad~v~ 55 (198)
+..+.++.+.+.. ++||+..++++- ++-.++.++...+.|+|++.
T Consensus 121 ~~leai~~l~~~~~~~~~v~~~~~gP~t~a~~l~~~~g~e~~~~~~~~~Pe~v~~ll~~~~~~~~~~~~~~~~~G~d~i~ 200 (343)
T PF01208_consen 121 EVLEAIKILKEELGDDVPVIGTVFGPFTLASDLMEGRGFEEFLMDLYDDPEKVHELLDKITDFIIEYAKAQIEAGADGIF 200 (343)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEEEE-HHHHHHHHHHSSS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHhcCcEEEEecCchHHHHHHHHHcCCCHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 4455566666665 788888775321 13345667777899999998
Q ss_pred EcCCCCcCCCCCHHHHH----HHHHHHHccC---CC-CEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC-CHHHHH
Q psy9711 56 ILCPYYFQKKMTEDLIY----EHFISVADNS---PI-PVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT-DNIKLA 125 (198)
Q Consensus 56 ~~~P~y~~~~~~~~~i~----~y~~~i~~~~---~~-pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s-d~~~~~ 125 (198)
+....-.-. |++... -|++.+.+.. +. ++++|.... . ...+..+.+.+ ++..+-.. |+....
T Consensus 201 ~~d~~~~~i--sp~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~----~--~~~~~~l~~~g~d~~~~~~~~~~~~~~ 272 (343)
T PF01208_consen 201 IFDSSGSLI--SPEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN----T--TPILDDLADLGADVLSVDEKVDLAEAK 272 (343)
T ss_dssp EEETTGGGS---HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH----G---GGHHHHHTSS-SEEEE-TTS-HHHHH
T ss_pred ccccccCCC--CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc----h--HHHHHHHHhcCCCEEEEcCCCCHHHHH
Confidence 876222222 355544 4467777766 34 888887542 1 23677777765 56665444 664443
Q ss_pred HHHhhcCCCCeEEEecChhh--HH-----------HHhh---cCCCeEEecccccc-----hHHHHHHHHHHH
Q psy9711 126 NMANQTKDLNFSVFAGSAGY--LL-----------SGLL---VGCAGGINALSAVL-----GGPICELYDLAK 177 (198)
Q Consensus 126 ~~~~~~~~~~~~v~~G~d~~--~~-----------~~l~---~G~~G~is~~~n~~-----P~~~~~l~~~~~ 177 (198)
+.+ +++..++.|.|.. +. ..+. .+..|+|-+.+|-+ |+-+..++++++
T Consensus 273 ~~~----~~~~~l~Gni~~~~~l~gt~eei~~~v~~~i~~~~~~~~gfIl~~gc~ip~~~p~eni~a~~~a~~ 341 (343)
T PF01208_consen 273 RKL----GDKIVLMGNIDPVSLLFGTPEEIEEEVKRLIEEGLAGGGGFILSPGCGIPPDTPPENIKAMVEAVK 341 (343)
T ss_dssp HHH----TTSSEEEEEB-G-GGGGS-HHHHHHHHHHHHHHTHCTSSSEEBEBSS---TTS-HHHHHHHHHHHH
T ss_pred HHh----CCCeEEECCCCccccccCCHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCcCHHHHHHHHHHHH
Confidence 322 3666666666541 21 2233 35788888877633 466777777665
No 314
>PLN02979 glycolate oxidase
Probab=85.96 E-value=20 Score=30.92 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
.+|.++ ++.+++..++|||+ ||.+ .+-++.+.++|+|++.+..-
T Consensus 209 ~ltW~d----l~wlr~~~~~PvivKgV~~------~~dA~~a~~~Gvd~I~Vsnh 253 (366)
T PLN02979 209 TLSWKD----VQWLQTITKLPILVKGVLT------GEDARIAIQAGAAGIIVSNH 253 (366)
T ss_pred CCCHHH----HHHHHhccCCCEEeecCCC------HHHHHHHHhcCCCEEEECCC
Confidence 466655 33334444899988 6753 56677889999999999854
No 315
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=85.95 E-value=4.8 Score=31.88 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q psy9711 39 TIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~ 57 (198)
..++++..++.|++.+++.
T Consensus 148 ~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 148 LEELAKRFEELGVKAIIYT 166 (234)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 3444444444444444443
No 316
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=85.94 E-value=1.9 Score=36.67 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=46.7
Q ss_pred CeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHcc-CCCCEEEEeC
Q psy9711 25 KTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADN-SPIPVIIYNN 91 (198)
Q Consensus 25 ~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~-~~~pi~lYn~ 91 (198)
..||+=+--.|. -+..+.++.+++.||+++.++. |.||..+ . +|.+.+.++ +++||+-=|+
T Consensus 119 ~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs--~----e~L~~vr~~~v~lPvLrKDF 189 (338)
T PLN02460 119 PGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQGS--F----ENLEAIRNAGVKCPLLCKEF 189 (338)
T ss_pred cceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCCC--H----HHHHHHHHcCCCCCEeeccc
Confidence 568876633222 3678999999999999999996 7777766 4 567888887 8999987664
No 317
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=85.75 E-value=17 Score=29.37 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=60.1
Q ss_pred CCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccC
Q psy9711 24 KKTIIAGTYCESTRAT---IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS 100 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~---i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~ 100 (198)
+-.|+=||...+.+++ +++++.+.+.|||-++...=.-.... .+-+++..+++|+.+.+|+.+ .|--=+
T Consensus 14 ~GrVVKGv~F~~lrd~GDpVelA~~Y~e~GADElvFlDItAs~~g--r~~~~~vv~r~A~~vfiPltV------GGGI~s 85 (256)
T COG0107 14 DGRVVKGVNFKNLRDAGDPVELAKRYNEEGADELVFLDITASSEG--RETMLDVVERVAEQVFIPLTV------GGGIRS 85 (256)
T ss_pred CCEEEecccccchhhcCChHHHHHHHHHcCCCeEEEEeccccccc--chhHHHHHHHHHhhceeeeEe------cCCcCC
Confidence 3456778877777655 99999999999999998865544444 788999999999999999987 233336
Q ss_pred HHHHHHHHc
Q psy9711 101 VDTLVKLAH 109 (198)
Q Consensus 101 ~~~l~~L~~ 109 (198)
.+.+.+|..
T Consensus 86 ~eD~~~ll~ 94 (256)
T COG0107 86 VEDARKLLR 94 (256)
T ss_pred HHHHHHHHH
Confidence 677777764
No 318
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=85.73 E-value=20 Score=29.96 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=85.9
Q ss_pred HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEE
Q psy9711 16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
++..++.-++-+..|+.+.- -|+.++++|.+++....=. ...|. ++.+++.+..+.|++.+++||+.
T Consensus 7 lr~~l~~~~~~~~pg~~D~l------SAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 80 (290)
T TIGR02321 7 LRAALDSGRLFTAMAAHNPL------VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIA 80 (290)
T ss_pred HHHHHhCCCCEEeccccCHH------HHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEE
Confidence 33344332444556776532 2566777899999887521 12222 46899999999999999999776
Q ss_pred EeCCCCcccccCHHH---HHHHHcCCCEEEEeeC-------------------CH----HHHHHHHhhcCCCCeEEEecC
Q psy9711 89 YNNTFVTNIDISVDT---LVKLAHHENIRGVKDT-------------------DN----IKLANMANQTKDLNFSVFAGS 142 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~---l~~L~~~p~i~giK~s-------------------d~----~~~~~~~~~~~~~~~~v~~G~ 142 (198)
|.- +|+.=++++ ++++. .-.++||--+ +. .+++.......+++|.|..=.
T Consensus 81 -D~d--~GyG~~~~v~~tV~~~~-~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ART 156 (290)
T TIGR02321 81 -DID--TGFGNAVNVHYVVPQYE-AAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV 156 (290)
T ss_pred -ECC--CCCCCcHHHHHHHHHHH-HcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 442 555444443 34443 2344444333 22 233333322345677765443
Q ss_pred hhh---------H---HHHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711 143 AGY---------L---LSGLLVGCAGGINALSAVLGGPICELYDLAK 177 (198)
Q Consensus 143 d~~---------~---~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~ 177 (198)
|.. + -....+|+|++.--....-++.+.++.+.+.
T Consensus 157 Da~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 157 EALIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_pred ccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcC
Confidence 432 2 2235789998865322235777777777653
No 319
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=85.72 E-value=9.4 Score=32.89 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711 15 IISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYY 61 (198)
Q Consensus 15 l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y 61 (198)
-++.+++..+.|+|+ ||. ..+-++.+.++|+|++.+...-.
T Consensus 227 ~i~~ir~~~~~pviiKgV~------~~eda~~a~~~G~d~I~VSnhGG 268 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIV------TAEDAKRCIELGADGVILSNHGG 268 (361)
T ss_pred HHHHHHHhCCCCEEEecCC------CHHHHHHHHHCCcCEEEECCCCc
Confidence 355555555667655 662 34556778889999999986443
No 320
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=85.72 E-value=12 Score=30.54 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHhc---C-CeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 8 TEEEKLKIISTLRQET---K-KTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~-~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
+..=..++++-+.+++ + ..++. +.+..+.+...+..+.+.+.|+|++++.+. . .+.+...++.+. ..
T Consensus 9 ~~~f~~~~~~gi~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~-----~--~~~~~~~l~~~~-~~ 80 (302)
T TIGR02637 9 GNPFFEAANKGAEEAAKELGSVYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISAN-----D--PDALVPALKKAM-KR 80 (302)
T ss_pred CCHHHHHHHHHHHHHHHHhCCeeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-----C--hHHHHHHHHHHH-HC
Confidence 3333455665555555 4 34443 345567788889999999999999999753 1 444455555554 36
Q ss_pred CCCEEEEeCC
Q psy9711 83 PIPVIIYNNT 92 (198)
Q Consensus 83 ~~pi~lYn~P 92 (198)
++|+++++.+
T Consensus 81 giPvV~~~~~ 90 (302)
T TIGR02637 81 GIKVVTWDSG 90 (302)
T ss_pred CCEEEEeCCC
Confidence 8999999864
No 321
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=85.69 E-value=3.4 Score=36.26 Aligned_cols=86 Identities=12% Similarity=0.104 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
.++++.+.+. +.+++.|+.+ +...++.++.+.+.|+|.+.+. |.|...+. .....++++.+.+..++||+.-
T Consensus 97 ~~~i~~a~~~-G~~~~~g~~s--~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~-~~~~~~~l~~l~~~~~iPI~a~--- 168 (430)
T PRK07028 97 EDAVRAARKY-GVRLMADLIN--VPDPVKRAVELEELGVDYINVH-VGIDQQML-GKDPLELLKEVSEEVSIPIAVA--- 168 (430)
T ss_pred HHHHHHHHHc-CCEEEEEecC--CCCHHHHHHHHHhcCCCEEEEE-eccchhhc-CCChHHHHHHHHhhCCCcEEEE---
Confidence 3455555543 7788877422 2223556788889999999765 54432110 1223467888887778999872
Q ss_pred CCcccccCHHHHHHHHcC
Q psy9711 93 FVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~ 110 (198)
.| ++++.+.++.+.
T Consensus 169 --GG--I~~~n~~~~l~a 182 (430)
T PRK07028 169 --GG--LDAETAAKAVAA 182 (430)
T ss_pred --CC--CCHHHHHHHHHc
Confidence 23 467777777643
No 322
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.68 E-value=14 Score=29.77 Aligned_cols=73 Identities=10% Similarity=0.003 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..++...+..+.++..+..+.+...++|++++.++. .+.....++.+. ..++|+++
T Consensus 15 ~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~-------~~~~~~~~~~~~-~~~iPvV~ 86 (280)
T cd06315 15 ILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVD-------AAELQAELELAQ-KAGIPVVG 86 (280)
T ss_pred HHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHHHHHHHH-HCCCCEEE
Confidence 345555555555 6666666666677777888889999999999998533 222224445543 46899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 87 ~d~~ 90 (280)
T cd06315 87 WHAG 90 (280)
T ss_pred ecCC
Confidence 9863
No 323
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=85.61 E-value=1.9 Score=33.06 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=0.0
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
++|++..+.++ ++.+.+.|+|.+.+.| |.-.+++ .+.-=.+.++.+++.+++||+
T Consensus 97 ~ig~S~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~-~~~~g~~~l~~~~~~~~~pv~ 153 (180)
T PF02581_consen 97 IIGASCHSLEE----AREAEELGADYVFLGPVFPTSSKPG-APPLGLDGLREIARASPIPVY 153 (180)
T ss_dssp EEEEEESSHHH----HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEE
T ss_pred EEEeecCcHHH----HHHhhhcCCCEEEECCccCCCCCcc-ccccCHHHHHHHHHhCCCCEE
No 324
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=85.50 E-value=13 Score=31.45 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCe-EEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcC-------CCCCHHHHHHHHHHHHccCC
Q psy9711 14 KIISTLRQETKKT-IIAG-TYCESTRATIDLTQKAAKAGANAALIL-CPYYFQ-------KKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 14 ~l~~~~~~~~~~p-vi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~-------~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.++.+.+..+.| |++| |+ +.+.++++.++|||++.+. -|--.. .....-+ .....+++++.+
T Consensus 126 ~~i~~i~~~~p~~~vi~GnV~------t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~-l~ai~ev~~a~~ 198 (321)
T TIGR01306 126 NMIKHIKTHLPDSFVIAGNVG------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQ-LAALRWCAKAAR 198 (321)
T ss_pred HHHHHHHHhCCCCEEEEecCC------CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchH-HHHHHHHHHhcC
Confidence 3455555544444 8888 75 5667788889999999877 333211 0000112 245667777778
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+||+. ..|+.-+.+..+-|+-
T Consensus 199 ~pVIa-----dGGIr~~~Di~KALa~ 219 (321)
T TIGR01306 199 KPIIA-----DGGIRTHGDIAKSIRF 219 (321)
T ss_pred CeEEE-----ECCcCcHHHHHHHHHc
Confidence 88665 3677777777777773
No 325
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=85.49 E-value=19 Score=29.59 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=62.8
Q ss_pred CeEEEe-CCCCcHHHHHHHHHHHHhcC----CCEEEE--------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE---
Q psy9711 25 KTIIAG-TYCESTRATIDLTQKAAKAG----ANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII--- 88 (198)
Q Consensus 25 ~pvi~g-v~~~~~~~~i~~a~~a~~~G----ad~v~~--------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l--- 88 (198)
..+|+| ++-.|-+..++.|+..+++| +.++.= ..||-|.-- .-++=+++.+++.+.+++||+-
T Consensus 11 ~~~iAGPC~vEs~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~-G~eeGL~~L~~vk~~~GlpvvTeV~ 89 (264)
T PRK05198 11 FFLIAGPCVIESRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGP-GLEEGLKILQEVKETFGVPVLTDVH 89 (264)
T ss_pred eEEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHCCceEEEeC
Confidence 447788 56667778888999998854 444433 245544432 2477889999999999999973
Q ss_pred --------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 --------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 --------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
..+|.+.-. ..+++..+++....|-+|-.
T Consensus 90 ~~~~~~~v~~~~DilQIgArn~r--n~~LL~a~g~t~kpV~lKrG 132 (264)
T PRK05198 90 EPEQAAPVAEVVDVLQIPAFLCR--QTDLLVAAAKTGKVVNIKKG 132 (264)
T ss_pred CHHHHHHHHhhCcEEEECchhcc--hHHHHHHHhccCCeEEecCC
Confidence 234554222 34777777777788888877
No 326
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=85.49 E-value=21 Score=30.07 Aligned_cols=121 Identities=13% Similarity=0.006 Sum_probs=70.5
Q ss_pred HHHHHHHHhc--CCeEEEeCCCCcH------------------------------HHHHHHHHHHHhcCCCEEEEcCCCC
Q psy9711 14 KIISTLRQET--KKTIIAGTYCEST------------------------------RATIDLTQKAAKAGANAALILCPYY 61 (198)
Q Consensus 14 ~l~~~~~~~~--~~pvi~gv~~~~~------------------------------~~~i~~a~~a~~~Gad~v~~~~P~y 61 (198)
+.++.+.+.. ++||+..++++=| +..++.++...++|+|++.+.-|.-
T Consensus 125 ~ai~~l~~~~~~~~pv~g~v~GP~Tla~~l~g~~~~~~~~~~~pe~v~~ll~~i~~~~~~~~~~~~~~Gad~I~i~dp~a 204 (340)
T TIGR01463 125 EAIKILRERYGDTHPIIGPMGGPFTLAQLMIGVSEFLSWISTDPDYAKAVLELALDFVIAYAKAMVEAGADVIAIADPFA 204 (340)
T ss_pred HHHHHHHHHcCCceeeeCCCCcHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCcc
Confidence 4455555555 5888888776622 2346666777799999999988864
Q ss_pred cCCCCCHHHHH----HHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC-CHHHHHHHHhhcC
Q psy9711 62 FQKKMTEDLIY----EHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT-DNIKLANMANQTK 132 (198)
Q Consensus 62 ~~~~~~~~~i~----~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s-d~~~~~~~~~~~~ 132 (198)
...-.+++... .|++++.+.. +.+.++|.. |.. ...+..+.+.+ ++..+=.. |+....+ ..
T Consensus 205 ~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~C----G~~--~~~~~~l~~~g~d~ls~d~~~~l~~~~~----~~ 274 (340)
T TIGR01463 205 SSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHIC----GFT--QPILRDIANNGCFGFSVDMKPGMDHAKR----VI 274 (340)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEC----CCc--hhhHHHHHHhCCCEEeecCCCCHHHHHH----Hc
Confidence 32112365444 5668888774 445555553 221 33566666643 66664444 7655433 33
Q ss_pred CCCeEEEecChh
Q psy9711 133 DLNFSVFAGSAG 144 (198)
Q Consensus 133 ~~~~~v~~G~d~ 144 (198)
+++..+..|.|.
T Consensus 275 g~~~~i~Gnidp 286 (340)
T TIGR01463 275 GGQASLVGNLSP 286 (340)
T ss_pred CCceEEEecCCh
Confidence 455665655543
No 327
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=85.45 E-value=5.5 Score=33.72 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.+.++..++..++||+++.|=.+..+ +..|.++|+|+|++..-..-..+ +-.+-+-|+.-.+
T Consensus 238 p~~i~~~~e~~~vpVivdAGIg~~sd----a~~AmelGadgVL~nSaIa~a~d--Pv~Ma~A~~~av~ 299 (326)
T PRK11840 238 PYTIRLIVEGATVPVLVDAGVGTASD----AAVAMELGCDGVLMNTAIAEAKN--PVLMARAMKLAVE 299 (326)
T ss_pred HHHHHHHHHcCCCcEEEeCCCCCHHH----HHHHHHcCCCEEEEcceeccCCC--HHHHHHHHHHHHH
Confidence 44566666666899999877665655 46788999999999987764444 8777777765443
No 328
>PRK06256 biotin synthase; Validated
Probab=85.44 E-value=9.6 Score=32.10 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEE
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAA 54 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v 54 (198)
|.+++.+.++.+.+.. ..-+|+|. ..+.++.++.++.+.++|++.+
T Consensus 185 t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~~~v 233 (336)
T PRK06256 185 TYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELDADSI 233 (336)
T ss_pred CHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCCCCEE
Confidence 3444444444444432 22233444 2344444444444444444443
No 329
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=85.43 E-value=26 Score=32.93 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC
Q psy9711 41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT 119 (198)
Q Consensus 41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s 119 (198)
.++..|..+|||+|+++.... + ++++.++++ .+...++-+++=-. +.+.+.+-.+ -+.|+||=.-
T Consensus 124 ~QI~ea~~~GADavLLI~~~L---~--~~~l~~l~~-~a~~lGme~LvEvh--------~~~el~~a~~~ga~iiGINnR 189 (695)
T PRK13802 124 YQIWEARAHGADLVLLIVAAL---D--DAQLKHLLD-LAHELGMTVLVETH--------TREEIERAIAAGAKVIGINAR 189 (695)
T ss_pred HHHHHHHHcCCCEeehhHhhc---C--HHHHHHHHH-HHHHcCCeEEEEeC--------CHHHHHHHHhCCCCEEEEeCC
Confidence 355667789999999997653 2 555655554 55678887776321 2445555554 5689998765
Q ss_pred -------CHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcCCCeEEeccccc-chHHHHHHHHHHHcCC
Q psy9711 120 -------DNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVGCAGGINALSAV-LGGPICELYDLAKAGK 180 (198)
Q Consensus 120 -------d~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~~gd 180 (198)
|+....+++. ..+++..+. +|.. ..+......|+||++-|.+-+ .|.+-..+.+...++.
T Consensus 190 dL~tf~vd~~~t~~L~~-~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~~ 261 (695)
T PRK13802 190 NLKDLKVDVNKYNELAA-DLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAGA 261 (695)
T ss_pred CCccceeCHHHHHHHHh-hCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhccc
Confidence 6667777663 445554433 3433 234455678999999888744 2333344444444443
No 330
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.43 E-value=12 Score=29.69 Aligned_cols=72 Identities=4% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++.+.+.+ +.-+++..+..+.+...+..+...+.++|++++.+.. .. .+.+.+ .+ +..++|+++
T Consensus 14 ~~~~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~---~~--~~~~~~---~~-~~~~ipvV~ 84 (269)
T cd06281 14 LAQLFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGD---ER--DPELVD---AL-ASLDLPIVL 84 (269)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCC---CC--cHHHHH---HH-HhCCCCEEE
Confidence 344555555554 6667776666677777888888888899999997542 11 233333 32 335899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
++.+
T Consensus 85 i~~~ 88 (269)
T cd06281 85 LDRD 88 (269)
T ss_pred Eecc
Confidence 9864
No 331
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=85.32 E-value=7.7 Score=35.59 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
+.+..++.++.+.++|+|.+.+.--. ... ++.++.+.++.+-+..++||-+|
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~-G~~--~P~~v~~lv~~lk~~~~~pi~~H 198 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMA-GIL--TPKAAYELVSALKKRFGLPVHLH 198 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC-CCc--CHHHHHHHHHHHHHhCCCceEEE
Confidence 46788889999999999977665433 333 38889999999988888888765
No 332
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=85.30 E-value=3 Score=33.64 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.++++.+.+.+++||+++=+-.+.++..++.+ ..+.|+|++++..-.|... .+.++..++++
T Consensus 179 ~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~-~~~~GvdgV~igra~~~g~-~~~~~~~~~~~ 240 (241)
T PRK14024 179 LELLREVCARTDAPVVASGGVSSLDDLRALAE-LVPLGVEGAIVGKALYAGA-FTLPEALAVVR 240 (241)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhh-hccCCccEEEEeHHHHcCC-CCHHHHHHHhc
Confidence 45666666666999999887777888776643 2357999999998887654 35777766643
No 333
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=85.26 E-value=6.9 Score=34.57 Aligned_cols=174 Identities=14% Similarity=0.025 Sum_probs=93.5
Q ss_pred cCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCC-----CEEEEcCCCCcCCCCCHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGA-----NAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Ga-----d~v~~~~P~y~~~~~~~~~i~ 72 (198)
......+||......+++.+ +..+ .+.+++.++++.+++++.+++.|+ .++|+. ++....+ .
T Consensus 198 q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~-~~~~G~~-----a- 270 (439)
T cd08211 198 QPFCPLKKVIPLVADAMRRAQDETGEAKLFSANITADDPDEMIARGEYILEAFGPNAGHVAFLVD-GYVAGPA-----A- 270 (439)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCcceEEecCCCCCHHHHHHHHHHHHHhcCcccCceEEEEC-cccchHH-----H-
Confidence 34566789987666666655 4444 458887789999999999998876 877775 3332221 2
Q ss_pred HHHHHHHc-cCCCCEEEEeCCC--Cc----ccccCHHHHHHHHcC---CCEE-----EEeeC-CHHHHHHH-------Hh
Q psy9711 73 EHFISVAD-NSPIPVIIYNNTF--VT----NIDISVDTLVKLAHH---ENIR-----GVKDT-DNIKLANM-------AN 129 (198)
Q Consensus 73 ~y~~~i~~-~~~~pi~lYn~P~--~t----g~~l~~~~l~~L~~~---p~i~-----giK~s-d~~~~~~~-------~~ 129 (198)
++.+.+ ..++||..+-.-. .+ ..-++..++.+|.++ +.+. .=|.. +.....+. .+
T Consensus 271 --l~~lr~~~~~l~IhaHrA~~ga~~r~~~~~Gis~~vl~kl~RLaGaD~~h~g~~~~Gk~~~~~~~~~~~~~~~~~~~~ 348 (439)
T cd08211 271 --VTTARRRFPDQFLHYHRAGHGAVTSPQSKRGYTAFVLSKMARLQGASGIHTGTMGFGKMEGESSDKVIAYMIERDEAQ 348 (439)
T ss_pred --HHHHHhhCCCcEEEecccccccccccccCCCccHHHHHHHHHhcCCCccccCCcccCCCCCCHHHHHhhhhhhhhhhc
Confidence 223332 3577777553211 01 123555566655432 2222 23444 32221111 10
Q ss_pred hc--------CCCCeEEEecChh--hHHHHh-hcC-CCeEEecccccc--h-------HHHHHHHHHHHcC-CHHHHHH
Q psy9711 130 QT--------KDLNFSVFAGSAG--YLLSGL-LVG-CAGGINALSAVL--G-------GPICELYDLAKAG-KWEEAMK 186 (198)
Q Consensus 130 ~~--------~~~~~~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~--P-------~~~~~l~~~~~~g-d~~~A~~ 186 (198)
.. ..+-|.|.+|.-+ .+...+ ..| .|-++...+.++ | +.+++-|+++.+| ..+++.+
T Consensus 349 ~~~~~q~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~G~~l~e~Ak 427 (439)
T cd08211 349 GPLFNQKWYGMKPTTPIISGGMNALRLPGFFENLGNGNVILTAGGGSFGHIDGPAAGAKSLRQAYDAWKQGVDVIEYAK 427 (439)
T ss_pred CccccCcccCCCCceEecCCCCCHhHHHHHHHHhCCCCEEEEcCccccCCCCChHHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 10 1234777776443 233332 467 355554444442 2 5788888999888 4555443
No 334
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=85.05 E-value=4.7 Score=33.54 Aligned_cols=85 Identities=9% Similarity=0.187 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
++++.+++..++||+ ...|+-.+.+-+ +.+.++|+|++++..-.+...+ +....+.|...... ||.
T Consensus 193 elL~ei~~~~~iPVV~~AeGGI~TPeda---a~vme~GAdgVaVGSaI~ks~d--P~~~akafv~ai~~-------~~~- 259 (293)
T PRK04180 193 ELVKEVAELGRLPVVNFAAGGIATPADA---ALMMQLGADGVFVGSGIFKSGD--PEKRARAIVEATTH-------YDD- 259 (293)
T ss_pred HHHHHHHHhCCCCEEEEEeCCCCCHHHH---HHHHHhCCCEEEEcHHhhcCCC--HHHHHHHHHHHHHH-------cCC-
Confidence 456666665589997 566666443333 3334589999999988876665 87777777666542 443
Q ss_pred CCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711 93 FVTNIDISVDTLVKLAH-H-ENIRGVKDT 119 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~-~-p~i~giK~s 119 (198)
|+.+.+.++ + ....|+-.+
T Consensus 260 --------~~~~~~~s~~~~~~m~g~~~~ 280 (293)
T PRK04180 260 --------PEVLAEVSKGLGEAMVGIDID 280 (293)
T ss_pred --------HHHHHHHHcccccccCCCccc
Confidence 567777773 4 356666554
No 335
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.00 E-value=20 Score=29.35 Aligned_cols=81 Identities=12% Similarity=0.017 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC-CCCEEEEeCCCCcc-cccCHHHHHHHHc-
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS-PIPVIIYNNTFVTN-IDISVDTLVKLAH- 109 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~-~~pi~lYn~P~~tg-~~l~~~~l~~L~~- 109 (198)
+...+.++.|+.+|++.+.+.|.++.... .++. .+.++.+.+.. ++++.+=|.|.... ..-+++.+.+|.+
T Consensus 88 ~~~~~~i~~A~~lga~~vv~H~G~~~~~~--~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~ 165 (274)
T TIGR00587 88 DVLDEELKRCELLGIMLYNFHPGSALKCS--EEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV 165 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Confidence 34456667788999998888776654322 3333 33445555443 58888988875422 2237888888884
Q ss_pred C---CCEEEEeeC
Q psy9711 110 H---ENIRGVKDT 119 (198)
Q Consensus 110 ~---p~i~giK~s 119 (198)
+ |++.-+=|+
T Consensus 166 ~~~~~~lg~~lDt 178 (274)
T TIGR00587 166 IVDKRRIGVCLDT 178 (274)
T ss_pred cCCCCceEEEEEh
Confidence 3 555444444
No 336
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=84.90 E-value=3.1 Score=33.59 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
...++..++..++|||+..|=.+..++.+ |.++|+|+|++-.-..-..+ +-.+-+-|+.-.++
T Consensus 164 ~~~l~~i~~~~~vPvIvDAGiG~pSdaa~----AMElG~daVLvNTAiA~A~d--Pv~MA~Af~~AV~A 226 (247)
T PF05690_consen 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQ----AMELGADAVLVNTAIAKAKD--PVAMARAFKLAVEA 226 (247)
T ss_dssp HHHHHHHHHHGSSSBEEES---SHHHHHH----HHHTT-SEEEESHHHHTSSS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCHHHHHH----HHHcCCceeehhhHHhccCC--HHHHHHHHHHHHHH
No 337
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=84.88 E-value=2.6 Score=36.04 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 103 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~ 103 (198)
-++|++..+.++ ++.|.+.|+|.+.+. |.|..++ .++- -.++++.+++.+++|++-- .| ++++.
T Consensus 241 ~iIG~S~Hs~~e----~~~A~~~GaDYI~lG-Pvf~T~tKp~~~~~-Gle~l~~~~~~~~iPv~Ai-----GG--I~~~n 307 (347)
T PRK02615 241 KIIGRSTTNPEE----MAKAIAEGADYIGVG-PVFPTPTKPGKAPA-GLEYLKYAAKEAPIPWFAI-----GG--IDKSN 307 (347)
T ss_pred CEEEEecCCHHH----HHHHHHcCCCEEEEC-CCcCCCCCCCCCCC-CHHHHHHHHHhCCCCEEEE-----CC--CCHHH
Confidence 467888776554 466778899998887 4544322 1122 2578888888888998763 23 56788
Q ss_pred HHHHHc
Q psy9711 104 LVKLAH 109 (198)
Q Consensus 104 l~~L~~ 109 (198)
+.++.+
T Consensus 308 i~~l~~ 313 (347)
T PRK02615 308 IPEVLQ 313 (347)
T ss_pred HHHHHH
Confidence 888875
No 338
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=84.75 E-value=17 Score=28.53 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
++..=..++++.+.+++ +..++......+.++..+..+.+.+.++|++++.++. .+...+.++.+. ..+
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~-------~~~~~~~l~~l~-~~~ 80 (268)
T cd06323 9 LNNPFFVTLKDGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTD-------SDAVVPAVKAAN-EAG 80 (268)
T ss_pred ccCHHHHHHHHHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hHHHHHHHHHHH-HCC
Confidence 34444555666665555 6666666666678888888888888899999997532 222234445543 458
Q ss_pred CCEEEEeCC
Q psy9711 84 IPVIIYNNT 92 (198)
Q Consensus 84 ~pi~lYn~P 92 (198)
+|++..+.+
T Consensus 81 ipvv~~~~~ 89 (268)
T cd06323 81 IPVFTIDRE 89 (268)
T ss_pred CcEEEEccC
Confidence 999988764
No 339
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=84.75 E-value=18 Score=30.86 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=78.3
Q ss_pred HHHHHHHh-cCCeEEEe--CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 15 IISTLRQE-TKKTIIAG--TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 15 l~~~~~~~-~~~pvi~g--v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
-++.+.+. +.+||+.= +-+ --++..|...|||+|+++.-.. +++-+.+|-.+|...++-+++=-.
T Consensus 171 ~L~~vr~~~v~lPvLrKDFIID------~yQI~eAr~~GADAVLLIaaiL------~~~~L~~l~~~A~~LGme~LVEVH 238 (338)
T PLN02460 171 NLEAIRNAGVKCPLLCKEFIVD------AWQIYYARSKGADAILLIAAVL------PDLDIKYMLKICKSLGMAALIEVH 238 (338)
T ss_pred HHHHHHHcCCCCCEeeccccCC------HHHHHHHHHcCCCcHHHHHHhC------CHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34455554 36676542 111 2355667789999999996653 344567777888889987775221
Q ss_pred CCCcccccCHHHHHHHHcC--CCEEEEeeC-------CHHHHHHHHhh----cC-CCCeEEE--ecChh--hHHHHhhcC
Q psy9711 92 TFVTNIDISVDTLVKLAHH--ENIRGVKDT-------DNIKLANMANQ----TK-DLNFSVF--AGSAG--YLLSGLLVG 153 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~~--p~i~giK~s-------d~~~~~~~~~~----~~-~~~~~v~--~G~d~--~~~~~l~~G 153 (198)
+.+.+.+-.+. ..|+||=.- |+....++... .. +++..+. +|..+ .+......|
T Consensus 239 --------~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G 310 (338)
T PLN02460 239 --------DEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG 310 (338)
T ss_pred --------CHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC
Confidence 24556555554 689999764 66766666631 12 2344333 34332 344455789
Q ss_pred CCeEEecccc
Q psy9711 154 CAGGINALSA 163 (198)
Q Consensus 154 ~~G~is~~~n 163 (198)
++|++-|.+-
T Consensus 311 adAvLVGEsL 320 (338)
T PLN02460 311 VKAVLVGESL 320 (338)
T ss_pred CCEEEECHHH
Confidence 9999988763
No 340
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=84.64 E-value=20 Score=29.06 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHHHHHHHHHHccCCCCEEEEeCCCCccc-ccCHHHHHHHHcCCC-
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEHFISVADNSPIPVIIYNNTFVTNI-DISVDTLVKLAHHEN- 112 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~-~l~~~~l~~L~~~p~- 112 (198)
+-+-+.++.|.+.|+|.++.--|.+++|- .+.+......+.+. .-++.++-+|.|.-... .++ +.+.+.....+
T Consensus 44 D~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li-~~~I~vy~~Ht~lD~~~~G~n-~~La~~Lgl~~~ 121 (249)
T TIGR00486 44 DASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKILL-QNDISLYSAHTNLDAHDGGNN-DALARALGLENP 121 (249)
T ss_pred cCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHHHH-HCCCeEEEeecchhcCCCCHH-HHHHHHcCCCcc
Confidence 33445556777889999999999988762 11222233344433 35788888886643211 122 23444432211
Q ss_pred ---------EEEEe-eC-CHHHHHHHHhhcC--------C------CCeEEEecChhh-HHHHhhcCCCeEEecccc
Q psy9711 113 ---------IRGVK-DT-DNIKLANMANQTK--------D------LNFSVFAGSAGY-LLSGLLVGCAGGINALSA 163 (198)
Q Consensus 113 ---------i~giK-~s-d~~~~~~~~~~~~--------~------~~~~v~~G~d~~-~~~~l~~G~~G~is~~~n 163 (198)
++|-- .. +...+.+.+++.. + .++.+.+|.... +..+...|+|-+++|=..
T Consensus 122 ~~~~~~g~G~vg~l~~~~~~~~~~~~vk~~l~~~~vr~~~~~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~ITGd~k 198 (249)
T TIGR00486 122 KEFEDYGLGRVGEFKAPIESLEEVLEIKKVLNVKPLLVVKNGPEYVKKVAVVSGSGLSFIMKALREGVDAYITGDLS 198 (249)
T ss_pred ccccCCCceeEEECCCCCCHHHHHHHHHHHhCCCCEEEeCCCCCceeEEEEEcCchHHHHHHHHHcCCCEEEecCCc
Confidence 22222 22 4444333222110 0 247777787764 446678899999998653
No 341
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=84.55 E-value=3.4 Score=33.29 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+++-+.++.+.+.|-|++|+.--- ..+.+.+.+-.+.|.+.+++|++++-
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~----gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSD----GVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcc----cccHHHHHHHHHHHHhhcCCCEEEec
Confidence 678888999999999999997432 23478899999999999999999974
No 342
>PRK10799 metal-binding protein; Provisional
Probab=84.46 E-value=9.8 Score=30.80 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccCCCCEEEEeCCCCccc--ccCHHHHHHHHcCCC
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNSPIPVIIYNNTFVTNI--DISVDTLVKLAHHEN 112 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~~~pi~lYn~P~~tg~--~l~~~~l~~L~~~p~ 112 (198)
+.+-.+.|.+.|+|.++.--|.++++. ..-.. +-++.+. ..++.++-+|.|.-... .++.. +.+.....+
T Consensus 45 t~~vi~~A~~~~~dlIitHHP~~~~~~--~~~~~~~~~~~~~~li-~~~i~vy~~Htn~D~~~~~G~n~~-la~~Lgl~~ 120 (247)
T PRK10799 45 SQALLDEAVRLQADAVIVHHGYFWKGE--SPVIRGMKRNRLKTLL-ANDINLYGWHLPLDAHPELGNNAQ-LAALLGITV 120 (247)
T ss_pred CHHHHHHHHHCCCCEEEECCchhccCC--CccccchHHHHHHHHH-HCCCeEEEEecchhhCCCCCHHHH-HHHHcCCCc
Confidence 355567788889999999999988764 22121 2222333 24788888887654322 12223 333332221
Q ss_pred --------EEEEe-eC-CHHHHHHHHhhc----------CC----CCeEEEecChhh-HHHHhhcCCCeEEeccc
Q psy9711 113 --------IRGVK-DT-DNIKLANMANQT----------KD----LNFSVFAGSAGY-LLSGLLVGCAGGINALS 162 (198)
Q Consensus 113 --------i~giK-~s-d~~~~~~~~~~~----------~~----~~~~v~~G~d~~-~~~~l~~G~~G~is~~~ 162 (198)
.+|-- .. +...+.+.+++. .. .++.+.+|.... +..+...|+|-+++|=.
T Consensus 121 ~~~~~~~~~~g~l~~~~s~~~l~~~vk~~l~~~~~~~~~~~~~~i~rVAi~~GsG~~~i~~a~~~gaD~~ITGd~ 195 (247)
T PRK10799 121 MGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEV 195 (247)
T ss_pred ccCcCCceeeEECCCCcCHHHHHHHHHHHhCCCeEEECCCCCCcccEEEEECCchHHHHHHHHHcCCCEEEECCc
Confidence 11221 12 444444333210 00 347778887664 44556789999998864
No 343
>PRK08999 hypothetical protein; Provisional
Probab=84.36 E-value=5.8 Score=33.01 Aligned_cols=77 Identities=18% Similarity=0.325 Sum_probs=48.3
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHH
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLV 105 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~ 105 (198)
++|++..+.++ ++.|.+.|+|.+.+.| .|...+. .+.-=.+.++.+++.+++||+. -.| ++++.+.
T Consensus 228 ~ig~S~h~~~~----~~~a~~~~~dyi~~gp-vf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~A-----iGG--I~~~~~~ 295 (312)
T PRK08999 228 WVAASCHDAEE----LARAQRLGVDFAVLSP-VQPTASHPGAAPLGWEGFAALIAGVPLPVYA-----LGG--LGPGDLE 295 (312)
T ss_pred EEEEecCCHHH----HHHHHhcCCCEEEECC-CcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE-----ECC--CCHHHHH
Confidence 55666665554 4566778999988865 4433221 1111246778888888899886 233 6788888
Q ss_pred HHHcC--CCEEEE
Q psy9711 106 KLAHH--ENIRGV 116 (198)
Q Consensus 106 ~L~~~--p~i~gi 116 (198)
++.+. ..|.++
T Consensus 296 ~~~~~g~~gva~i 308 (312)
T PRK08999 296 EAREHGAQGIAGI 308 (312)
T ss_pred HHHHhCCCEEEEE
Confidence 88754 444443
No 344
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=84.29 E-value=19 Score=28.62 Aligned_cols=76 Identities=8% Similarity=-0.024 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+..-..++++.+.+++ +..+++.. +..+.+...+..+...+.++|++++.|.. .+...+.++.+. + +
T Consensus 9 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~-------~~~~~~~l~~~~-~-~ 79 (271)
T cd06314 9 ASPFWKIAEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPID-------PKAVIPALNKAA-A-G 79 (271)
T ss_pred CcHHHHHHHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-------hhHhHHHHHHHh-c-C
Confidence 3445566777666666 66776654 33466777788888889999999998632 222234555554 4 8
Q ss_pred CCEEEEeCC
Q psy9711 84 IPVIIYNNT 92 (198)
Q Consensus 84 ~pi~lYn~P 92 (198)
+|+++.+.+
T Consensus 80 ipvV~~~~~ 88 (271)
T cd06314 80 IKLITTDSD 88 (271)
T ss_pred CCEEEecCC
Confidence 999999864
No 345
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=84.28 E-value=30 Score=31.93 Aligned_cols=112 Identities=19% Similarity=0.167 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
+.+|-+.+++.+.+...+|+|+.++- .+.+++++.+ .+.|++++.+-.-. .++.+....+.+
T Consensus 149 ~~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~---~~~~~~avGiNC~~------~p~~~~~~l~~l 219 (612)
T PRK08645 149 DLEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKEL---VAAGADVVGLNCGL------GPYHMLEALERI 219 (612)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHH---HhCCCCEEEecCCC------CHHHHHHHHHHH
Confidence 56777777777765435898887642 2245555555 35678777765321 166777777777
Q ss_pred HccCCCCEEEEeCCCCc-------ccccCHHHHHHHH----cC-CCEEEEeeC-CHHHHHHHH
Q psy9711 79 ADNSPIPVIIYNNTFVT-------NIDISVDTLVKLA----HH-ENIRGVKDT-DNIKLANMA 128 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~t-------g~~l~~~~l~~L~----~~-p~i~giK~s-d~~~~~~~~ 128 (198)
...+++|+++|-|.+.. ....+++.+.+.+ +. -+|+|=-.. ++.+++++.
T Consensus 220 ~~~~~~pl~vypNaG~~~~~~~~~~~~~~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la 282 (612)
T PRK08645 220 PIPENAPLSAYPNAGLPEYVDGRYVYSANPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMA 282 (612)
T ss_pred HhccCceEEEEECCCCCCCCCCccccCCCHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHH
Confidence 77678999999874431 1234666665554 22 478887777 777766654
No 346
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=84.23 E-value=12 Score=31.01 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.-...+++-+.+++ +..++......+.++..+..+.....++||+++.+.. .+ + +.+ +.+.+..++|+
T Consensus 72 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~---~~--~-~~~---~~l~~~~~iPv 142 (341)
T PRK10703 72 PYFAEIIEAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSE---YP--E-PLL---AMLEEYRHIPM 142 (341)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC---CC--H-HHH---HHHHhcCCCCE
Confidence 34455555555555 6667766666677777888888888899999987652 12 3 232 33333368999
Q ss_pred EEEeCC
Q psy9711 87 IIYNNT 92 (198)
Q Consensus 87 ~lYn~P 92 (198)
+++|.+
T Consensus 143 V~~d~~ 148 (341)
T PRK10703 143 VVMDWG 148 (341)
T ss_pred EEEecc
Confidence 999863
No 347
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=84.12 E-value=4.2 Score=32.72 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=47.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALI 56 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~ 56 (198)
+-.+--+.+|-.++++.+++.- + ||..|+..+.-+.=+++=+.|..+|+|++--
T Consensus 197 ~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~ 251 (275)
T COG1856 197 GNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRITF 251 (275)
T ss_pred cCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCceeec
Confidence 3445568899999999999988 7 9999999988899999999999999998754
No 348
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=84.09 E-value=27 Score=30.19 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
++|.++ ++..++..++|||+ ||.+ .+-++.+.++|+|++.+..-
T Consensus 210 ~~tW~d----i~wlr~~~~~PiivKgV~~------~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 210 TLSWKD----VQWLQTITKLPILVKGVLT------GEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred CCCHHH----HHHHHhccCCCEEeecCCC------HHHHHHHHHcCCCEEEECCC
Confidence 455554 33333334899988 7753 56677889999999999854
No 349
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=84.08 E-value=17 Score=30.96 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEE-----eCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIA-----GTYCESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~-----gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
..+|.+|-...++.++..++.|+++ |....+.+++++.+.+. ++.||++|=+-.- ..+..+-.+.+
T Consensus 76 ~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg--------~~~~~~~I~~l 147 (332)
T PLN02424 76 LPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGG--------SPSRVTAAKAI 147 (332)
T ss_pred CCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCC--------cHHHHHHHHHH
Confidence 3578999999999888877666655 33445789999999988 6799999987421 25567778888
Q ss_pred HccCCCCEEE
Q psy9711 79 ADNSPIPVII 88 (198)
Q Consensus 79 ~~~~~~pi~l 88 (198)
. ..++||+=
T Consensus 148 ~-~~GIPV~g 156 (332)
T PLN02424 148 V-EAGIAVMG 156 (332)
T ss_pred H-HcCCCEEE
Confidence 8 67999993
No 350
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=84.07 E-value=10 Score=32.06 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHHc
Q psy9711 10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVAD 80 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~~ 80 (198)
+...++++.+.+.. .+||++|.. .+.+.++.+.++|||++.+. .|.....+ ..+-..+.-..+.++
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G~v-----~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~ 194 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAGNV-----VTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR 194 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEECCC-----CCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh
Confidence 45566777777665 588887444 23455677778999999873 23221100 012233333444455
Q ss_pred cCCCCEE
Q psy9711 81 NSPIPVI 87 (198)
Q Consensus 81 ~~~~pi~ 87 (198)
..++||+
T Consensus 195 ~~~vpVI 201 (325)
T cd00381 195 DYGVPVI 201 (325)
T ss_pred hcCCcEE
Confidence 5578987
No 351
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=83.94 E-value=5 Score=33.92 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCC-CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--C-----
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKM-TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--E----- 111 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~-~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p----- 111 (198)
++.++.+.+.|+|++++..+--..... +......-...+.+..++||+. ..| -.+...+...... .
T Consensus 146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPVia-----AGG-I~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIA-----AGG-IADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEE-----ESS---SHHHHHHHHHCT-SEEEES
T ss_pred HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEE-----ecC-cCCHHHHHHHHHcCCCEeecC
Confidence 566788899999999998664221110 1225889999999999999997 333 3455544433322 1
Q ss_pred -CEEEEeeC-CHHHHHHHHhhcCCCCeEE
Q psy9711 112 -NIRGVKDT-DNIKLANMANQTKDLNFSV 138 (198)
Q Consensus 112 -~i~giK~s-d~~~~~~~~~~~~~~~~~v 138 (198)
.+..-+++ -...+++.+.+....+..+
T Consensus 220 TrFl~t~Es~~~~~~K~~l~~a~~~dtv~ 248 (330)
T PF03060_consen 220 TRFLATEESGASDAYKQALVDATEEDTVL 248 (330)
T ss_dssp HHHHTSTTS-S-HHHHHHHHHGGTT-EEE
T ss_pred CeEEecccccChHHHHHHHHhCCCCCEEE
Confidence 23344555 3344444443344455444
No 352
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=83.90 E-value=20 Score=28.45 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
.++++.+++.+++||++|-+-.+.+++.++ .+.|++.+++-.-.
T Consensus 63 ~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~----~~~G~~~vilg~~~ 106 (232)
T TIGR03572 63 FELISNLAEECFMPLTVGGGIRSLEDAKKL----LSLGADKVSINTAA 106 (232)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHH----HHcCCCEEEEChhH
Confidence 456777776668999998888777766653 45699999887444
No 353
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=83.89 E-value=14 Score=28.68 Aligned_cols=74 Identities=5% Similarity=0.064 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
..-+..+.+-+.+++ +..++......+..+.++..+.+.+.|+|++++.+.. ++ . .. .+. +...++|
T Consensus 11 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~---~~--~--~~--~~~-~~~~~ip 80 (264)
T cd06267 11 NPFFAELLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSR---LD--D--EL--LEE-LAALGIP 80 (264)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCC---cc--h--HH--HHH-HHHcCCC
Confidence 334455555555555 6777777777777788888988988899999986543 11 1 11 333 4567899
Q ss_pred EEEEeCC
Q psy9711 86 VIIYNNT 92 (198)
Q Consensus 86 i~lYn~P 92 (198)
++..+.+
T Consensus 81 vv~~~~~ 87 (264)
T cd06267 81 VVLVDRP 87 (264)
T ss_pred EEEeccc
Confidence 9998875
No 354
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.86 E-value=15 Score=29.34 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
...+++.+.+++ +.-++...+..+.++-.+..+.+.+.++|++++.+.. .+.+.+..+.+. ..++|+++
T Consensus 14 ~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~-------~~~~~~~i~~~~-~~~iPvV~ 85 (282)
T cd06318 14 FAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVD-------PEGLVPAVAAAK-AAGVPVVV 85 (282)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------ccchHHHHHHHH-HCCCCEEE
Confidence 344555555555 6666665555677777788888999999999987532 122223344443 46899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 86 ~~~~ 89 (282)
T cd06318 86 VDSS 89 (282)
T ss_pred ecCC
Confidence 9964
No 355
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=83.82 E-value=19 Score=32.33 Aligned_cols=81 Identities=14% Similarity=0.001 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..|.+|-.+.+..+++.+ +..|..+. +..+.+..++.++.+.++|++.+.+.- ..... +|+++.+.++.+.
T Consensus 109 ~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D-TvG~~--~P~~~~~~i~~l~ 185 (494)
T TIGR00973 109 KMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPD-TVGYA--LPAEYGNLIKGLR 185 (494)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC-CCCCC--CHHHHHHHHHHHH
Confidence 456777777666666666 55566554 445678999999999999999766643 33333 3999999999998
Q ss_pred ccCC----CCEEEE
Q psy9711 80 DNSP----IPVIIY 89 (198)
Q Consensus 80 ~~~~----~pi~lY 89 (198)
+..+ +|+-+|
T Consensus 186 ~~~~~~~~v~l~~H 199 (494)
T TIGR00973 186 ENVPNIDKAILSVH 199 (494)
T ss_pred HhhccccCceEEEE
Confidence 8763 556664
No 356
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=83.77 E-value=16 Score=28.98 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=46.4
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.++++.+.+++ +..++...+..+.+...+..+.+...++|++++.++. +....+.++.+ ...++|++..
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~-------~~~~~~~i~~~-~~~~ipvV~~ 86 (273)
T cd06305 15 QAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGR-------AEVLKPWVKRA-LDAGIPVVAF 86 (273)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------hhhhHHHHHHH-HHcCCCEEEe
Confidence 34444444444 6666665566677777888888888899999997643 11122334444 3468999999
Q ss_pred eCC
Q psy9711 90 NNT 92 (198)
Q Consensus 90 n~P 92 (198)
|.+
T Consensus 87 ~~~ 89 (273)
T cd06305 87 DVD 89 (273)
T ss_pred cCC
Confidence 863
No 357
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=83.74 E-value=18 Score=28.39 Aligned_cols=73 Identities=10% Similarity=0.096 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.-..++++.+.+++ +..++...+..+.++..+..+.....++|++++.++. . .+.+ ++.+ ...++|+
T Consensus 12 ~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~---~---~~~~---~~~~-~~~~ipv 81 (259)
T cd01542 12 FSTSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATT---I---TDEH---REAI-KKLNVPV 81 (259)
T ss_pred chHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCC---C---CHHH---HHHH-hcCCCCE
Confidence 33455666665555 6667666666677778888888888999999998653 1 2222 2333 3357999
Q ss_pred EEEeCC
Q psy9711 87 IIYNNT 92 (198)
Q Consensus 87 ~lYn~P 92 (198)
++++.+
T Consensus 82 v~~~~~ 87 (259)
T cd01542 82 VVVGQD 87 (259)
T ss_pred EEEecc
Confidence 999875
No 358
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=83.74 E-value=11 Score=29.61 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC-CCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK-MTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~-~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
+-.++++.+.+..++++++++. +.++ ++.+.++|+|.+.+.+--+...+ .+...-.++.+.+.+.+++|++.
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~--t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia- 182 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADIS--TLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA- 182 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECC--CHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEE-
Confidence 4445555554442467766654 2333 35566778777654321111100 00112235666676666777664
Q ss_pred eCCCCcccccCHHHHHHHHcC
Q psy9711 90 NNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~~ 110 (198)
.|---+++.+.++.+.
T Consensus 183 -----~GGI~~~~~~~~~l~~ 198 (219)
T cd04729 183 -----EGRINSPEQAAKALEL 198 (219)
T ss_pred -----eCCCCCHHHHHHHHHC
Confidence 2212256666666543
No 359
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=83.71 E-value=18 Score=30.28 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
++.+=+.++++-+.+++ +.-++...+..+.+...+..+...+.++|++++.+.. .+...++.+.+ ...+
T Consensus 35 ~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~-------~~~~~~~l~~~-~~~~ 106 (330)
T PRK10355 35 LRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN-------GQVLSNVIKEA-KQEG 106 (330)
T ss_pred CCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhhHHHHHHHH-HHCC
Confidence 34444556666665555 6777777666677778888888889999999997421 22233445554 3567
Q ss_pred CCEEEEeCC
Q psy9711 84 IPVIIYNNT 92 (198)
Q Consensus 84 ~pi~lYn~P 92 (198)
+|+++.|.+
T Consensus 107 iPvV~id~~ 115 (330)
T PRK10355 107 IKVLAYDRM 115 (330)
T ss_pred CeEEEECCC
Confidence 999999865
No 360
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=83.59 E-value=7.2 Score=34.40 Aligned_cols=62 Identities=6% Similarity=0.133 Sum_probs=44.1
Q ss_pred CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
...|+. +....+.+++.+.++.+.+.++|++++..+.|.. ...+... +...+.|+++++.|.
T Consensus 36 ~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~----~~~~~~~----~~~~~~Pvll~a~~~ 98 (452)
T cd00578 36 PVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP----AKMWIAG----LSELRKPVLLLATQF 98 (452)
T ss_pred CceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEccccccc----HHHHHHH----HHhcCCCEEEEeCCC
Confidence 445433 3333478888888888888899999998888764 3333333 445689999999876
No 361
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=83.57 E-value=7.8 Score=30.99 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCC--CHHHHHHHHH---HHHccCCCCEEEEeCCCCcccccCHHHHHH
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFI---SVADNSPIPVIIYNNTFVTNIDISVDTLVK 106 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~i~~y~~---~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~ 106 (198)
|..|.++++++++.|.+.|+.-++..|-++ .+.. +.+.+..-+. .+...-.+|+-++- + .-+.++.+++..
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~-~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~p--G-QEIrIt~~vl~~ 90 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHL-HGRYENPIEKVKEKANQLNEILKKEAIDLKVLP--G-QEIRITGDVLDD 90 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeeccccc-CCccCChHHHHHHHHHHHHHHHHhhcCCceecc--C-ceEEEchHHHHH
Confidence 778899999999999999999887765443 3221 2555555444 44444467777753 2 445678888888
Q ss_pred HHc--CCCEEEEe
Q psy9711 107 LAH--HENIRGVK 117 (198)
Q Consensus 107 L~~--~p~i~giK 117 (198)
|.+ ++.+.--|
T Consensus 91 l~~g~I~tindsk 103 (254)
T COG4464 91 LDKGIILTINDSK 103 (254)
T ss_pred HhcCccccccccc
Confidence 873 44444333
No 362
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=83.57 E-value=2.7 Score=27.50 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=23.7
Q ss_pred EEEeCCCCcHHHHH-HHHHHHHhcCCCEEEEc
Q psy9711 27 IIAGTYCESTRATI-DLTQKAAKAGANAALIL 57 (198)
Q Consensus 27 vi~gv~~~~~~~~i-~~a~~a~~~Gad~v~~~ 57 (198)
|+.+.++ +.++++ ++.++|+++||++++-+
T Consensus 19 iv~~~~~-d~d~Al~eM~e~A~~lGAnAVVGv 49 (74)
T TIGR03884 19 IVSTESD-NVDEIVENLREKVKAKGGMGLIAF 49 (74)
T ss_pred EEEEecC-CHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5667777 777776 56788999999999876
No 363
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=83.49 E-value=6.5 Score=32.01 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ 63 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~ 63 (198)
++++.+.+..++||+++=|-.+.++..++.+ +.|++++++..++++.
T Consensus 186 ~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~---~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 186 ELLKSFRNALKIPLIALGGAGSLDDIVEAIL---NLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHH---HCCCCEEEEcceeeeC
Confidence 4555555555999999888777888776643 4599999999999886
No 364
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.47 E-value=23 Score=28.95 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=56.5
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHH-ccCCCCEE--E
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVA-DNSPIPVI--I 88 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~-~~~~~pi~--l 88 (198)
++-.|.++.+.+++.++...+.|||.+=+.-|+-.+.. .+-+++++..+++. +..+.|++ -
T Consensus 17 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~ 96 (258)
T PRK13111 17 YITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT 96 (258)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 44578899999999999999999999999999844321 12446666777776 44567744 5
Q ss_pred EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
|-+|-. ....+-+.+-++.-.+.|+-..
T Consensus 97 Y~N~i~---~~G~e~f~~~~~~aGvdGviip 124 (258)
T PRK13111 97 YYNPIF---QYGVERFAADAAEAGVDGLIIP 124 (258)
T ss_pred cccHHh---hcCHHHHHHHHHHcCCcEEEEC
Confidence 556642 2233333333322245555544
No 365
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=83.44 E-value=8.1 Score=30.56 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred CccCCCCHHHHHHHHHHHHHh------------------c------CCeEEEeCC----CCcHHHHHHHHHHHHhcCCCE
Q psy9711 2 SNSFKSTEEEKLKIISTLRQE------------------T------KKTIIAGTY----CESTRATIDLTQKAAKAGANA 53 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~------------------~------~~pvi~gv~----~~~~~~~i~~a~~a~~~Gad~ 53 (198)
|-.+.+|+++|.++++.+.+. . +.+||+.-- ..+.++..+..+.+++.|+|.
T Consensus 67 GG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadi 146 (224)
T PF01487_consen 67 GGRFQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADI 146 (224)
T ss_dssp TSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SE
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCe
Q ss_pred EEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 54 ALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 54 v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+=+..+.-.... -..+.+..+..-+..+.|++.++
T Consensus 147 vKia~~~~~~~D--~~~l~~~~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 147 VKIAVMANSPED--VLRLLRFTKEFREEPDIPVIAIS 181 (224)
T ss_dssp EEEEEE-SSHHH--HHHHHHHHHHHHHHTSSEEEEEE
T ss_pred EEEEeccCCHHH--HHHHHHHHHHHhhccCCcEEEEE
No 366
>PLN02428 lipoic acid synthase
Probab=83.27 E-value=12 Score=32.03 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 6 KSTEEEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
..+.+++.++++.+.+.. +.-+|+|.| .+.+|.++.++.+.++|+|.+.+.
T Consensus 227 ~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLG-ET~Edv~e~l~~Lrelgvd~vtig 282 (349)
T PLN02428 227 RAGYKQSLDVLKHAKESKPGLLTKTSIMLGLG-ETDEEVVQTMEDLRAAGVDVVTFG 282 (349)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEeEEEecC-CCHHHHHHHHHHHHHcCCCEEeec
Confidence 357788889998888873 456788984 688999999999999999987663
No 367
>PRK13475 ribulose bisphosphate carboxylase; Provisional
Probab=83.23 E-value=10 Score=33.63 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=92.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhc-CCC----EEEEcCCCCcCCCCCHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKA-GAN----AALILCPYYFQKKMTEDLI 71 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~-Gad----~v~~~~P~y~~~~~~~~~i 71 (198)
.......+||......+++.+ +..+ .+.+++.++++.+++++.+++. |++ ++|+ .++....+ .
T Consensus 198 ~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~y~~NiTa~~~~em~~ra~~a~e~~G~~~~~~~vmv-~~~~~G~~-----a 271 (443)
T PRK13475 198 NQVFAPLKKTVPLVADAMKRAQDETGEAKLFSANITADDHYEMIARGEYILETFGENADHVAFLV-DGYVAGPG-----A 271 (443)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCceeEeccCCCCCHHHHHHHHHHHHHhcCCCccceEEEE-cCccchHH-----H
Confidence 345667889988777777666 3344 4578877899999999999998 988 4554 44433322 2
Q ss_pred HHHHHHHHc-cCCCCEEEEeCCC------CcccccCHHHHHHHHc---CCC-----EEEEeeC-CHHHHHHH-------H
Q psy9711 72 YEHFISVAD-NSPIPVIIYNNTF------VTNIDISVDTLVKLAH---HEN-----IRGVKDT-DNIKLANM-------A 128 (198)
Q Consensus 72 ~~y~~~i~~-~~~~pi~lYn~P~------~tg~~l~~~~l~~L~~---~p~-----i~giK~s-d~~~~~~~-------~ 128 (198)
.+.+++ ..++||..+-.-. ....-++.-++.+|.+ .+. +-.=|.. +....... .
T Consensus 272 ---l~~lr~~~~~l~ihaHrA~~ga~~r~~~~~Gis~~vl~Kl~RLaGaD~ih~gt~g~gk~~~~~~~~~~~~~~~~~~~ 348 (443)
T PRK13475 272 ---VTTARRQYPDQYLHYHRAGHGAVTSPSSKRGYTAFVLSKMARLQGASGIHTGTMGYGKMEGEADDRVIAYMIERDSA 348 (443)
T ss_pred ---HHHHHhcCCCcEEEeccccchhhhcCCCCCCEeHHHHHHHHHHcCCCccccCCcccCCCCCCHHHHHHhhhhhhhhh
Confidence 223333 3577776553211 0112344455555543 122 2133665 32221111 1
Q ss_pred hhc--------CCCCeEEEecChh-hHHHHh--hcC-CCeEEecccccc--h-------HHHHHHHHHHHcC-CHHHH
Q psy9711 129 NQT--------KDLNFSVFAGSAG-YLLSGL--LVG-CAGGINALSAVL--G-------GPICELYDLAKAG-KWEEA 184 (198)
Q Consensus 129 ~~~--------~~~~~~v~~G~d~-~~~~~l--~~G-~~G~is~~~n~~--P-------~~~~~l~~~~~~g-d~~~A 184 (198)
+.. ..+-+.|.+|.-+ ..++.+ ..| .|-++...+.++ | ..+++-|+++++| +.+++
T Consensus 349 ~~~~~~q~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHp~G~aaGa~A~rqA~ea~~~G~~l~e~ 426 (443)
T PRK13475 349 QGPFYHQEWYGMKPTTPIISGGMNALRLPGFFDNLGHGNVINTAGGGAFGHIDGPAAGAKSLRQAYDCWKAGADPIEY 426 (443)
T ss_pred cCccccCcccCCCCceEecCCCCCHhHHHHHHHHhCCCCEEEEcCccccCCCCChHHHHHHHHHHHHHHHcCCCHHHH
Confidence 000 1234667766443 233333 467 355544444442 2 5778888888888 44443
No 368
>PRK09875 putative hydrolase; Provisional
Probab=83.18 E-value=7.3 Score=32.51 Aligned_cols=49 Identities=10% Similarity=0.023 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCC--CEEEEcC
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGA--NAALILC 58 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Ga--d~v~~~~ 58 (198)
+|+.|++ ++++++++. ++||+.+++..+ ...++++.+++.|+ +.+++.-
T Consensus 133 it~~E~k-vl~Aaa~a~~~TG~pi~~Ht~~~~--~g~e~l~il~e~Gvd~~rvvi~H 186 (292)
T PRK09875 133 ITPLEEK-VFIAAALAHNQTGRPISTHTSFST--MGLEQLALLQAHGVDLSRVTVGH 186 (292)
T ss_pred CCHHHHH-HHHHHHHHHHHHCCcEEEcCCCcc--chHHHHHHHHHcCcCcceEEEeC
Confidence 4555543 333333333 566665544321 44444555555555 4444443
No 369
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=83.16 E-value=27 Score=29.52 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=99.3
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCC--CcCCC------CCHHHHHHHHHHHHccCC-CCEEEEeCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPY--YFQKK------MTEDLIYEHFISVADNSP-IPVIIYNNT 92 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~--y~~~~------~~~~~i~~y~~~i~~~~~-~pi~lYn~P 92 (198)
..|+.+++++.+.+...+-++.+++.|+|.+=+- .|. -.+-. .+++-+.+-.+++.++++ +||-+=-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKi-- 143 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKI-- 143 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEE--
Confidence 5689999999999999999999999999987665 343 11100 358999999999999995 9998865
Q ss_pred CCccccc---CHHHHHHHHc-C--C--CEEEEe----eC---CHHHHHHHHhhcCCCCeEEE-ecC--h-hhHHHHhh-c
Q psy9711 93 FVTNIDI---SVDTLVKLAH-H--E--NIRGVK----DT---DNIKLANMANQTKDLNFSVF-AGS--A-GYLLSGLL-V 152 (198)
Q Consensus 93 ~~tg~~l---~~~~l~~L~~-~--p--~i~giK----~s---d~~~~~~~~~~~~~~~~~v~-~G~--d-~~~~~~l~-~ 152 (198)
|.|.+- ....+.+.++ - . .|.|=+ .+ |++.+.++.+ ..++ +.|+ +|+ + +.....+. .
T Consensus 144 -RlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~-~~~~-ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 144 -RLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKE-AVPS-IPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred -ecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHH-hCCC-CeEEeCCCcCCHHHHHHHHHhh
Confidence 455432 2344555553 2 1 233333 22 6777777663 3333 4444 443 1 12334454 5
Q ss_pred CCCeEEeccccc-chHHHHHHHHHHHcCC
Q psy9711 153 GCAGGINALSAV-LGGPICELYDLAKAGK 180 (198)
Q Consensus 153 G~~G~is~~~n~-~P~~~~~l~~~~~~gd 180 (198)
|+||++.|=+.+ .|.++.++ +....|.
T Consensus 221 g~DgVMigRga~~nP~l~~~i-~~~~~g~ 248 (323)
T COG0042 221 GADGVMIGRGALGNPWLFRQI-DYLETGE 248 (323)
T ss_pred CCCEEEEcHHHccCCcHHHHH-HHhhcCC
Confidence 799999887765 58888887 6666665
No 370
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=83.13 E-value=28 Score=29.74 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=64.1
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCC-----------------HHHHHHHHHHHH--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMT-----------------EDLIYEHFISVA-- 79 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~-----------------~~~i~~y~~~i~-- 79 (198)
|.-||+| ++-.+.+.+++.|+..+++|.. .+.++--|++||--+ -++=+.+.+.+.
T Consensus 48 rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R~ll~~ 127 (344)
T TIGR00034 48 RLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIARKLLLD 127 (344)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHHHHHHH
Confidence 7788888 7777889999999999999874 445556666676211 245566777775
Q ss_pred -ccCCCCEEEEe-CCCCc------------c-cccCHHHHHHHH-cCCCEEEEeeC
Q psy9711 80 -DNSPIPVIIYN-NTFVT------------N-IDISVDTLVKLA-HHENIRGVKDT 119 (198)
Q Consensus 80 -~~~~~pi~lYn-~P~~t------------g-~~l~~~~l~~L~-~~p~i~giK~s 119 (198)
...++|+.-=- .|... | .+....+.++++ ...-=||+|.+
T Consensus 128 i~~~GlPvatE~ld~~~~~y~~Dlisw~aIGARt~esq~hRelaSgl~~PVgfKng 183 (344)
T TIGR00034 128 LVNLGLPIAGEFLDMISPQYLADLFSWGAIGARTTESQVHRELASGLSCPVGFKNG 183 (344)
T ss_pred HHHhCCCeEEEecCcCcHHHHHHHHhhccccCccccCHHHHHHHhCCCCceEecCC
Confidence 67789987311 11100 1 122234667888 58889999999
No 371
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=83.11 E-value=23 Score=28.72 Aligned_cols=113 Identities=11% Similarity=0.068 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEe------CCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHH
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAG------TYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLI 71 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~g------v~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i 71 (198)
.|.++..++.+.+.+...+.+.+. ..+.+ .+...+.++.|+++|++.+.+.+..+...+ ...+.+
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~ 121 (279)
T cd00019 42 LKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRV 121 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHH
Confidence 366777777777766512233222 22222 234467778889999998877665443211 012455
Q ss_pred HHHHHHHHcc---CCCCEEEEeCCCCc-ccccCHHHHHHHHc----CCCEEEEeeC
Q psy9711 72 YEHFISVADN---SPIPVIIYNNTFVT-NIDISVDTLVKLAH----HENIRGVKDT 119 (198)
Q Consensus 72 ~~y~~~i~~~---~~~pi~lYn~P~~t-g~~l~~~~l~~L~~----~p~i~giK~s 119 (198)
.+-++.+++. .++.+.+=|.+... ...-+++.+.++.+ .|++--+=|.
T Consensus 122 ~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~~g~~lD~ 177 (279)
T cd00019 122 IEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIKEKPRVGVCIDT 177 (279)
T ss_pred HHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCCCeEEEEEh
Confidence 6777777764 47888888876542 12346677777773 4676555554
No 372
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=83.10 E-value=21 Score=29.09 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCC--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYC--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
=..++++-+-+++ +..++...+. .+.++..+..+.+.+.++|++++.+.. .+.+.+.++.+ + .++|
T Consensus 13 f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~-------~~~~~~~l~~~-~-~~iP 83 (295)
T TIGR02955 13 YWLSINYGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVS-------PEALNHDLAQL-T-KSIP 83 (295)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------hhhhhHHHHHH-h-cCCC
Confidence 3444555444444 6677665443 366777888888999999999987532 22223444444 3 3899
Q ss_pred EEEEeC
Q psy9711 86 VIIYNN 91 (198)
Q Consensus 86 i~lYn~ 91 (198)
+++++.
T Consensus 84 vV~~~~ 89 (295)
T TIGR02955 84 VFALVN 89 (295)
T ss_pred EEEEec
Confidence 998854
No 373
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=83.09 E-value=17 Score=32.84 Aligned_cols=81 Identities=20% Similarity=0.062 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CCe-EEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKT-IIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~p-vi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
..|.+|-.+.+..+++.+ +.. |..|. +..+.+..++.++.+.++|+|.+.+.-- .... +|.++.++++.+
T Consensus 201 ~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DT-vG~~--tP~~v~~lV~~l 277 (503)
T PLN03228 201 KKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADT-VGIN--MPHEFGELVTYV 277 (503)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecC-CCCC--CHHHHHHHHHHH
Confidence 356667666666666666 443 55555 3344677899999999999998766543 3333 399999999999
Q ss_pred HccC----CCCEEEE
Q psy9711 79 ADNS----PIPVIIY 89 (198)
Q Consensus 79 ~~~~----~~pi~lY 89 (198)
.+.. ++||-++
T Consensus 278 ~~~~~~~~~i~I~~H 292 (503)
T PLN03228 278 KANTPGIDDIVFSVH 292 (503)
T ss_pred HHHhccccCceeEec
Confidence 8776 3666655
No 374
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=83.06 E-value=8.8 Score=32.88 Aligned_cols=69 Identities=10% Similarity=0.146 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 14 KIISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
++++.+.+. ++|+=.||.+.|+ +.++++++.+++.|.+-+.++- +.| +....++-|+
T Consensus 121 ~vv~~ak~~-~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~----KsS-~v~~~i~ayr 194 (360)
T PRK00366 121 EVVEAAKDY-GIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISV----KAS-DVQDLIAAYR 194 (360)
T ss_pred HHHHHHHHC-CCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE----EcC-CHHHHHHHHH
Confidence 344444443 8999999987774 4457888999999999998873 333 4778899999
Q ss_pred HHHccCCCCEEE
Q psy9711 77 SVADNSPIPVII 88 (198)
Q Consensus 77 ~i~~~~~~pi~l 88 (198)
.+++.++-|+=+
T Consensus 195 lla~~~dyPLHl 206 (360)
T PRK00366 195 LLAKRCDYPLHL 206 (360)
T ss_pred HHHhcCCCCcee
Confidence 999998766544
No 375
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=82.99 E-value=3.7 Score=33.41 Aligned_cols=62 Identities=26% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCeEEEeCCCCc--------HHHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 24 KKTIIAGTYCES--------TRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 24 ~~pvi~gv~~~~--------~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+++||+-+--.| ..+..++++.+++.||+++.+.. |.|+..+ . ++.+.+.+.+++||+--|+
T Consensus 40 ~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs--~----~~l~~v~~~v~~PvL~KDF 110 (247)
T PRK13957 40 SFSIIAECKRKSPSAGELRADYHPVQIAKTYETLGASAISVLTDQSYFGGS--L----EDLKSVSSELKIPVLRKDF 110 (247)
T ss_pred CCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHHCCCcEEEEEcCCCcCCCC--H----HHHHHHHHhcCCCEEeccc
Confidence 578888663322 13678999999999999999885 7788776 4 5667777778899987665
No 376
>PRK08185 hypothetical protein; Provisional
Probab=82.94 E-value=26 Score=29.14 Aligned_cols=97 Identities=10% Similarity=0.168 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
++++.+.+. +-. +......+.+.+....+.|++.+...++-..|...+.. ..++..+.+.+++.+++||.++-.-.
T Consensus 3 ~~L~~A~~~-~ya-V~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~--~~~~~~~~~~~a~~~~vPV~lHLDHg 78 (283)
T PRK08185 3 ELLKVAKEH-QFA-VGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFL--GDNFFAYVRERAKRSPVPFVIHLDHG 78 (283)
T ss_pred HHHHHHHHc-Cce-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc--cHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444444433 222 23445567888899999999999999999988776654 45599999999999999999987643
Q ss_pred CcccccCHHHHHHHHcCC-CEEEEeeC
Q psy9711 94 VTNIDISVDTLVKLAHHE-NIRGVKDT 119 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~p-~i~giK~s 119 (198)
-+.+.+.+..+.. +-+.+=.|
T Consensus 79 -----~~~e~i~~ai~~Gf~SVM~D~S 100 (283)
T PRK08185 79 -----ATIEDVMRAIRCGFTSVMIDGS 100 (283)
T ss_pred -----CCHHHHHHHHHcCCCEEEEeCC
Confidence 2577787777643 56777777
No 377
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=82.88 E-value=16 Score=29.59 Aligned_cols=72 Identities=7% Similarity=0.027 Sum_probs=46.4
Q ss_pred HHHHHHHHHhc---CCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 13 LKIISTLRQET---KKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
.++++.+.+++ +.-++ .+.+..+.+...+..+.+...++|++++.+ .- .+...+.++.+. ..++|+++
T Consensus 15 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~-~~------~~~~~~~i~~~~-~~~iPvV~ 86 (294)
T cd06316 15 NAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIP-VD------PVSTAAAYKKVA-EAGIKLVF 86 (294)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcC-CC------chhhhHHHHHHH-HcCCcEEE
Confidence 34555554444 66655 455666777778888888888999998863 21 222234455544 46899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 87 ~~~~ 90 (294)
T cd06316 87 MDNV 90 (294)
T ss_pred ecCC
Confidence 9874
No 378
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=82.84 E-value=14 Score=29.10 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=47.4
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
..+++.+.+++ +..++...+..+.+...+..+.+.+.++|++++.+.. .+ .. +.++.+ ...++|++++
T Consensus 15 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~---~~--~~---~~~~~~-~~~~ipvV~~ 85 (268)
T cd06289 15 AELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAA---GT--SP---DLLKRL-AESGIPVVLV 85 (268)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCC---Cc--cH---HHHHHH-HhcCCCEEEE
Confidence 33444444444 6677776666677878888888989999999998652 11 11 234443 3468999999
Q ss_pred eCC
Q psy9711 90 NNT 92 (198)
Q Consensus 90 n~P 92 (198)
|.+
T Consensus 86 ~~~ 88 (268)
T cd06289 86 ARE 88 (268)
T ss_pred ecc
Confidence 864
No 379
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=82.82 E-value=7 Score=35.61 Aligned_cols=76 Identities=8% Similarity=0.189 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC--------CCcccccCHHHHHHHHcCCC
Q psy9711 41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT--------FVTNIDISVDTLVKLAHHEN 112 (198)
Q Consensus 41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P--------~~tg~~l~~~~l~~L~~~p~ 112 (198)
+.++.+...|...++.. |.-... .+..+-++++.+.++.+++-+. +-.| ..+|..+..+.+.++.+.|+
T Consensus 68 ~~~~~al~~GvTtvv~~-P~~~~~-v~g~~~~~~~~~~a~~~~~d~~-~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~ 144 (552)
T TIGR01178 68 EFAKLVLPHGVTTVVSD-PHEIAN-VNGEDGINFMLNNAKKTPLNFY-FMLPSCVPALQFETSGAVLTAEDIDELMELDE 144 (552)
T ss_pred HHHHHHHCCCEEEEEcC-CCCCCC-CCCHHHHHHHHHHhhcCCcEEE-EECCCCCCCCcccCCCCccCHHHHHHHHcCCC
Confidence 45677788899887775 443322 1244555666666666666643 3334 23456778999999998899
Q ss_pred EEEEeeC
Q psy9711 113 IRGVKDT 119 (198)
Q Consensus 113 i~giK~s 119 (198)
|+|+|+-
T Consensus 145 V~glke~ 151 (552)
T TIGR01178 145 VLGLAEV 151 (552)
T ss_pred ccEEEEE
Confidence 9999987
No 380
>PRK06801 hypothetical protein; Provisional
Probab=82.81 E-value=12 Score=31.24 Aligned_cols=73 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 16 ISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 16 ~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
++.+++.+ +---+......+.+.+....+.|++.++..++-..|...+.. +.+.+..+.+.+++.+++||.++
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~-~~~~~~~~~~~~a~~~~vpV~lH 80 (286)
T PRK06801 6 LANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYI-SLESLVEAVKFEAARHDIPVVLN 80 (286)
T ss_pred HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcC-CHHHHHHHHHHHHHHCCCCEEEE
No 381
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=82.78 E-value=24 Score=28.62 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+..=..++++.+.+++ +..++......+.++..+..+.+.+.++|++++.+.. .+......+.+ ...++
T Consensus 37 ~~~f~~~~~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~-------~~~~~~~l~~~-~~~~i 108 (295)
T PRK10653 37 NNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD-------SDAVGNAVKMA-NQANI 108 (295)
T ss_pred CChHHHHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC-------hHHHHHHHHHH-HHCCC
Confidence 3333455665555555 7777666555567777888888888899999886432 22222333333 34689
Q ss_pred CEEEEeCC
Q psy9711 85 PVIIYNNT 92 (198)
Q Consensus 85 pi~lYn~P 92 (198)
|++++|.+
T Consensus 109 pvV~~~~~ 116 (295)
T PRK10653 109 PVITLDRG 116 (295)
T ss_pred CEEEEccC
Confidence 99999864
No 382
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=82.74 E-value=7.3 Score=32.69 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH-ccCCCCEEEEeC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA-DNSPIPVIIYNN 91 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~-~~~~~pi~lYn~ 91 (198)
..++..+++..++|||+.=|=.+-++ ++.+..+|||+|++...+.... +...-+.|++.. +...-..++.+.
T Consensus 150 ~~ll~~v~~~~~iPviaaGGI~~~~~----~~~al~~GA~gV~iGt~f~~t~---Es~~~~~~k~~l~~~~~~dt~~t~~ 222 (307)
T TIGR03151 150 MALVPQVVDAVSIPVIAAGGIADGRG----MAAAFALGAEAVQMGTRFLCAK---ECNVHPNYKEKVLKAKDRDTVVTGA 222 (307)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHH----HHHHHHcCCCEeecchHHhccc---ccCCCHHHHHHHHhCCCCCEEEEec
Confidence 45666666665899887433333333 3444457999999999876543 334556666644 555567777775
Q ss_pred C-CCcccccCHHHHHHHHc
Q psy9711 92 T-FVTNIDISVDTLVKLAH 109 (198)
Q Consensus 92 P-~~tg~~l~~~~l~~L~~ 109 (198)
+ .+.+..+..+...++.+
T Consensus 223 ~~G~~~R~l~n~~~~~~~~ 241 (307)
T TIGR03151 223 STGHPVRVLKNKLTRKYQE 241 (307)
T ss_pred CCCCceeeecCHHHHHHHh
Confidence 4 24455778888877764
No 383
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=82.68 E-value=18 Score=28.71 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhc----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 12 KLKIISTLRQET----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 12 r~~l~~~~~~~~----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
..++++.+.+.+ +.-++......+.++..+..+.+...++|++++.++.. +...+..+.+ .+.++|++
T Consensus 14 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~-------~~~~~~~~~~-~~~~ipvV 85 (270)
T cd06308 14 RAAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEA-------APLTPVVEEA-YRAGIPVI 85 (270)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCch-------hhchHHHHHH-HHCCCCEE
Confidence 344444444443 45666655555677778888888888999999876431 1111233343 34689999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
++|.+
T Consensus 86 ~~~~~ 90 (270)
T cd06308 86 LLDRK 90 (270)
T ss_pred EeCCC
Confidence 99863
No 384
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=82.61 E-value=14 Score=28.33 Aligned_cols=50 Identities=2% Similarity=-0.087 Sum_probs=26.6
Q ss_pred eCCCCcHHHHHHHHHHHH-hcCCCEEEEcCCC---CcCCCCCHHHHHHHHHHHHcc
Q psy9711 30 GTYCESTRATIDLTQKAA-KAGANAALILCPY---YFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 30 gv~~~~~~~~i~~a~~a~-~~Gad~v~~~~P~---y~~~~~~~~~i~~y~~~i~~~ 81 (198)
|+++.++.+..++..... ....|.|+++-=. .... +.+++.+-++.+.+.
T Consensus 50 Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~--~~~~~~~~l~~li~~ 103 (191)
T PRK10528 50 SISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGF--PPQQTEQTLRQIIQD 103 (191)
T ss_pred CcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCcCccCC--CHHHHHHHHHHHHHH
Confidence 677777776666555433 3356666665211 1112 256666666666543
No 385
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=82.56 E-value=18 Score=28.69 Aligned_cols=75 Identities=9% Similarity=0.113 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..++...+..+.+...+..+...+.++|++++.+....... ..+ .+++.+ ...++|+++
T Consensus 14 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~-~~~---~~~~~~-~~~~ipvV~ 88 (273)
T cd01541 14 FPSIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN-PNI---DLYLKL-EKLGIPYVF 88 (273)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc-ccH---HHHHHH-HHCCCCEEE
Confidence 445555555555 677777766677777888888899999999999764322111 011 344554 456899999
Q ss_pred EeC
Q psy9711 89 YNN 91 (198)
Q Consensus 89 Yn~ 91 (198)
.|.
T Consensus 89 ~~~ 91 (273)
T cd01541 89 INA 91 (273)
T ss_pred Eec
Confidence 985
No 386
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=82.50 E-value=33 Score=30.05 Aligned_cols=124 Identities=14% Similarity=0.180 Sum_probs=72.9
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHH
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLV 105 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~ 105 (198)
+.+|++-....++.+.++.+.++|+|.+.+-.-. .. .+.+.+..+.|-+.. +++++.=|. .+.+...
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~---g~--~~~~~~~v~~ik~~~p~~~vi~g~V-------~T~e~a~ 209 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAH---GH--STRIIELVKKIKTKYPNLDLIAGNI-------VTKEAAL 209 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCC---CC--ChhHHHHHHHHHhhCCCCcEEEEec-------CCHHHHH
Confidence 3344433334678999999999999999864332 22 455677777777766 588888664 4677777
Q ss_pred HHHcC--CCE-EEE--------e--eC-CHHHHHHH---HhhcCCCCeEEE-ec---ChhhHHHHhhcCCCeEEeccc
Q psy9711 106 KLAHH--ENI-RGV--------K--DT-DNIKLANM---ANQTKDLNFSVF-AG---SAGYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 106 ~L~~~--p~i-~gi--------K--~s-d~~~~~~~---~~~~~~~~~~v~-~G---~d~~~~~~l~~G~~G~is~~~ 162 (198)
++.+. .-| +|+ + .. ...++..+ .+.....++.|+ .| ....+..++.+|+++++.|..
T Consensus 210 ~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~ 287 (404)
T PRK06843 210 DLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL 287 (404)
T ss_pred HHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 77753 222 232 1 11 11222211 110111234444 34 234678899999999987765
No 387
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=82.48 E-value=27 Score=29.04 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=63.1
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhc----CCCEEEE--------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKA----GANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII-- 88 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~----Gad~v~~--------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l-- 88 (198)
..-+|+| ++-.|-+.+++.|+..++. |+..+.= ..|+-+..- .-++=+++.+++.+.+++||+-
T Consensus 16 ~~~lIAGPC~iEs~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~-G~eeGL~iL~~vk~~~glpvvTeV 94 (290)
T PLN03033 16 PFFLLAGPNVIESEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGP-GMAEGLKILEKVKVAYDLPIVTDV 94 (290)
T ss_pred CeEEEecCChhcCHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCceEEee
Confidence 3457777 5667778888888888885 8765543 235544322 2478889999999999999973
Q ss_pred ---------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 ---------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 ---------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
..+|.+.-. ..+++..+++....|-+|-.
T Consensus 95 ~~~~q~~~vae~~DilQIgAr~~r--qtdLL~a~~~tgkpV~lKkG 138 (290)
T PLN03033 95 HESSQCEAVGKVADIIQIPAFLCR--QTDLLVAAAKTGKIINIKKG 138 (290)
T ss_pred CCHHHHHHHHhhCcEEeeCcHHHH--HHHHHHHHHccCCeEEeCCC
Confidence 234544322 24566667777778888877
No 388
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=82.45 E-value=19 Score=28.33 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+..-..++++.+.+++ +..+++..+..+.+...+..+...+.++|++++.++. . .+.+... + +..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~---~---~~~~~~~---l-~~~~i 79 (268)
T cd06298 10 TNSYFAELARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK---I---SEEHREE---F-KRSPT 79 (268)
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCC---C---cHHHHHH---H-hcCCC
Confidence 3344455555555554 5566555556667777777777778899999997532 1 2333333 3 34589
Q ss_pred CEEEEeC
Q psy9711 85 PVIIYNN 91 (198)
Q Consensus 85 pi~lYn~ 91 (198)
|++++|.
T Consensus 80 pvV~~~~ 86 (268)
T cd06298 80 PVVLAGS 86 (268)
T ss_pred CEEEEcc
Confidence 9999986
No 389
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=82.32 E-value=25 Score=28.45 Aligned_cols=144 Identities=10% Similarity=-0.086 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH-HHHccCCCC----E
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI-SVADNSPIP----V 86 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~-~i~~~~~~p----i 86 (198)
..++++.+.+.+.+|+.+|-|-.|.+++ +.+-+.|++.+++..-.+..|. --+++.++|. .+.-+.+.- .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~----~~~l~~Ga~~vvigT~a~~~p~-~~~~~~~~~g~~ivvslD~k~~g~~ 136 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSL----RAALTGGRARVNGGTAALENPW-WAAAVIRYGGDIVAVGLDVLEDGEW 136 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHH----HHHHHcCCCEEEECchhhCCHH-HHHHHHHHccccEEEEEEEecCCce
Confidence 3457777777668899998887666554 4444579999998776554332 1223333331 122122211 0
Q ss_pred EEEeCCCCcccccCHH-HHHHHHcC--CCE-------EEEeeC-CHHHHHHHHhhcCCCCeEEEecC-hh--hHHHH--h
Q psy9711 87 IIYNNTFVTNIDISVD-TLVKLAHH--ENI-------RGVKDT-DNIKLANMANQTKDLNFSVFAGS-AG--YLLSG--L 150 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~-~l~~L~~~--p~i-------~giK~s-d~~~~~~~~~~~~~~~~~v~~G~-d~--~~~~~--l 150 (198)
...-..++.-..+++. .+.++.+. ..| .|.... |...+.++.. ..+-++ +.+|- .+ .+... +
T Consensus 137 ~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~-~~~~pv-iasGGv~s~eDl~~l~~l 214 (243)
T TIGR01919 137 HTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAA-RTDAIV-AASGGSSLLDDLRAIKYL 214 (243)
T ss_pred EEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHh-hCCCCE-EEECCcCCHHHHHHHHhh
Confidence 0111111222344554 44455443 233 344444 7777776653 322233 33332 22 22221 2
Q ss_pred -hcCCCeEEeccc
Q psy9711 151 -LVGCAGGINALS 162 (198)
Q Consensus 151 -~~G~~G~is~~~ 162 (198)
..|.+|++.|.+
T Consensus 215 ~~~Gv~gvivg~A 227 (243)
T TIGR01919 215 DEGGVSVAIGGKL 227 (243)
T ss_pred ccCCeeEEEEhHH
Confidence 459999998876
No 390
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=82.28 E-value=7.4 Score=32.20 Aligned_cols=47 Identities=13% Similarity=-0.086 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
.+...+++++..+.|++++++..-.-..+.+|.+|-.+..+.+.+.+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~ 66 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEET 66 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh
Confidence 34444444444445555544443221111122444444444444443
No 391
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=82.25 E-value=12 Score=31.76 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 13 LKIISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
+++++.+.+. ++|+=.||.+-|+ +.++++++.+++.|.+-+.++- +.| +....++-|
T Consensus 111 ~~vv~~ak~~-~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~----KsS-dv~~~i~ay 184 (346)
T TIGR00612 111 RDVVEKARDH-GKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSM----KAS-DVAETVAAY 184 (346)
T ss_pred HHHHHHHHHC-CCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE----EcC-CHHHHHHHH
Confidence 3455555444 8999999987764 4567888999999999888863 333 477788899
Q ss_pred HHHHccCCCCEEE
Q psy9711 76 ISVADNSPIPVII 88 (198)
Q Consensus 76 ~~i~~~~~~pi~l 88 (198)
+.+++.++-|+=+
T Consensus 185 r~la~~~dyPLHl 197 (346)
T TIGR00612 185 RLLAERSDYPLHL 197 (346)
T ss_pred HHHHhhCCCCcee
Confidence 9999988866543
No 392
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=82.07 E-value=12 Score=32.42 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=25.9
Q ss_pred HHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 16 ISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 16 ~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
++.+++..++||++ || .+.+-++.+.++|+|++.+..
T Consensus 237 i~~lr~~~~~pvivKgV------~s~~dA~~a~~~Gvd~I~Vs~ 274 (381)
T PRK11197 237 LEWIRDFWDGPMVIKGI------LDPEDARDAVRFGADGIVVSN 274 (381)
T ss_pred HHHHHHhCCCCEEEEec------CCHHHHHHHHhCCCCEEEECC
Confidence 44444445889877 67 234556778889999999875
No 393
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.04 E-value=10 Score=31.57 Aligned_cols=91 Identities=8% Similarity=0.084 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
+++++.+.+. +-.| ......+.+.+....+.|++.+...++-..|.-.+.. ..+.+..+.+.+++.+++||.++-.-
T Consensus 7 k~il~~A~~~-~yaV-~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-g~~~~~~~~~~~A~~~~VPV~lHLDH 83 (284)
T PRK09195 7 KQMLNNAQRG-GYAV-PAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYA-GTEYLLAIVSAAAKQYHHPLALHLDH 83 (284)
T ss_pred HHHHHHHHHc-CceE-EEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC-CHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3455555444 3333 4455567888888899999999999998888755443 36789999999999999999999764
Q ss_pred CCcccccCHHHHHHHHcCC
Q psy9711 93 FVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~p 111 (198)
.. +.+.+.+-.+..
T Consensus 84 g~-----~~e~i~~Ai~~G 97 (284)
T PRK09195 84 HE-----KFDDIAQKVRSG 97 (284)
T ss_pred CC-----CHHHHHHHHHcC
Confidence 32 456676666543
No 394
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=81.82 E-value=6.3 Score=31.72 Aligned_cols=74 Identities=16% Similarity=0.096 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIR 114 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~ 114 (198)
.+..++++.+++.|++.+++..-.-......+ =.+.++++.+.+++|++. +|---+++.+.++.+. .++.
T Consensus 146 ~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d~~~i~~i~~~~~ipvia------sGGi~s~~D~~~l~~~~~~Gvd 217 (241)
T PRK14024 146 GDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--NLELLREVCARTDAPVVA------SGGVSSLDDLRALAELVPLGVE 217 (241)
T ss_pred ccHHHHHHHHHhcCCCEEEEEeecCCCCccCC--CHHHHHHHHhhCCCCEEE------eCCCCCHHHHHHHhhhccCCcc
Confidence 44566666667777776666643211100001 134556666666677665 3444566666666532 3455
Q ss_pred EEee
Q psy9711 115 GVKD 118 (198)
Q Consensus 115 giK~ 118 (198)
|+=-
T Consensus 218 gV~i 221 (241)
T PRK14024 218 GAIV 221 (241)
T ss_pred EEEE
Confidence 5433
No 395
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=81.77 E-value=27 Score=28.48 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=73.1
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 94 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~ 94 (198)
.++.+.+.+++||+.-=.-.+. .++..|...|||+++++.... + ++++.++++ .+...++-.++--.
T Consensus 93 ~l~~v~~~v~~PvL~KDFIid~----~QI~ea~~~GADavLLI~~~L---~--~~~l~~l~~-~a~~lGle~LVEVh--- 159 (247)
T PRK13957 93 DLKSVSSELKIPVLRKDFILDE----IQIREARAFGASAILLIVRIL---T--PSQIKSFLK-HASSLGMDVLVEVH--- 159 (247)
T ss_pred HHHHHHHhcCCCEEeccccCCH----HHHHHHHHcCCCEEEeEHhhC---C--HHHHHHHHH-HHHHcCCceEEEEC---
Confidence 3444444447888773221111 344555669999999986653 2 666666554 45667877665321
Q ss_pred cccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEeccc
Q psy9711 95 TNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 95 tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~ 162 (198)
+.+.+.+-.+ -+.++||=.- |+....++.. ..+++..+. +|..+ .+.. +..+++|+.-|.+
T Consensus 160 -----~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~-~ip~~~~~IsESGI~t~~d~~~-l~~~~davLvG~~ 232 (247)
T PRK13957 160 -----TEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAA-FLPPNIVKVGESGIESRSDLDK-FRKLVDAALIGTY 232 (247)
T ss_pred -----CHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHh-hCCCCcEEEEcCCCCCHHHHHH-HHHhCCEEEECHH
Confidence 2344554444 5789998765 5666666663 344454433 34332 2222 2334899988876
No 396
>PLN02826 dihydroorotate dehydrogenase
Probab=81.77 E-value=36 Score=29.90 Aligned_cols=137 Identities=7% Similarity=-0.023 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHh--------c-CCeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQE--------T-KKTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 8 t~~Er~~l~~~~~~~--------~-~~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
..+.-.++++.+.+. . ++||++=++..-+ ++..+.++.+.+.|+|++.+..-....+. ++..
T Consensus 237 ~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~----dl~~---- 308 (409)
T PLN02826 237 GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPD----SVLG---- 308 (409)
T ss_pred ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCcc----chhc----
Confidence 345556677766543 2 6899997765444 47888889999999999999977654432 1110
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEEE--ecCh--hhHHHHhhcC
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVF--AGSA--GYLLSGLLVG 153 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v~--~G~d--~~~~~~l~~G 153 (198)
.+. -...-+.+|..+-+-.+. .+.++. +..++++.|+ .|-. ......+.+|
T Consensus 309 ------~~~-~~~~GGlSG~pl~~~sl~-----------------~v~~l~-~~~~~~ipIIgvGGI~sg~Da~e~i~AG 363 (409)
T PLN02826 309 ------HPH-ADEAGGLSGKPLFDLSTE-----------------VLREMY-RLTRGKIPLVGCGGVSSGEDAYKKIRAG 363 (409)
T ss_pred ------ccc-cccCCCcCCccccHHHHH-----------------HHHHHH-HHhCCCCcEEEECCCCCHHHHHHHHHhC
Confidence 110 001112344443332222 122222 1222334443 2332 2456778889
Q ss_pred CCeEEecccccc--hHHHHHHHHHHH
Q psy9711 154 CAGGINALSAVL--GGPICELYDLAK 177 (198)
Q Consensus 154 ~~G~is~~~n~~--P~~~~~l~~~~~ 177 (198)
++.+..+++.++ |.++.++.+.+.
T Consensus 364 As~VQv~Ta~~~~Gp~~i~~I~~eL~ 389 (409)
T PLN02826 364 ASLVQLYTAFAYEGPALIPRIKAELA 389 (409)
T ss_pred CCeeeecHHHHhcCHHHHHHHHHHHH
Confidence 998887877665 777766666553
No 397
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=81.71 E-value=18 Score=30.50 Aligned_cols=72 Identities=10% Similarity=0.182 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.-..++++-+-+++ +.-++++.+..+.++-.+..+...+.++||+++.+ ... .+...++ ....++|+
T Consensus 71 ~~~~~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~---~~~---~~~~~~~----l~~~~~P~ 140 (333)
T COG1609 71 PFFAEILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG---ERP---NDSLLEL----LAAAGIPV 140 (333)
T ss_pred chHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec---CCC---CHHHHHH----HHhcCCCE
Confidence 34455555555555 88888888888888888888999999999999997 122 3323332 23348999
Q ss_pred EEEeC
Q psy9711 87 IIYNN 91 (198)
Q Consensus 87 ~lYn~ 91 (198)
++.+.
T Consensus 141 V~i~~ 145 (333)
T COG1609 141 VVIDR 145 (333)
T ss_pred EEEeC
Confidence 99986
No 398
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=81.68 E-value=29 Score=28.80 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=60.6
Q ss_pred eEEEe-CCCCcHHHHHHHHHHHH----hcCCCEEEE--------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE----
Q psy9711 26 TIIAG-TYCESTRATIDLTQKAA----KAGANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVII---- 88 (198)
Q Consensus 26 pvi~g-v~~~~~~~~i~~a~~a~----~~Gad~v~~--------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l---- 88 (198)
-+|+| ++-.|-+.+++.++..+ ++|+..+.= ..|+.|..- .-++-+++++++.+.+++||+-
T Consensus 18 ~~iaGPCsvEs~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~-G~eeGL~iL~~vk~~~GlpvvTeV~~ 96 (281)
T PRK12457 18 VLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGV-GLDEGLRIFEEVKARFGVPVITDVHE 96 (281)
T ss_pred EEEecCCcccCHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCceEEEeCC
Confidence 46666 46667777788888755 689877554 245544432 2478899999999999999973
Q ss_pred -------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 -------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 -------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
-.+|.+.-. ..+++..+++....|-+|-.
T Consensus 97 ~~~~~~~ae~vDilQIgAr~~r--ntdLL~a~~~t~kpV~lKrG 138 (281)
T PRK12457 97 VEQAAPVAEVADVLQVPAFLAR--QTDLVVAIAKTGKPVNIKKP 138 (281)
T ss_pred HHHHHHHhhhCeEEeeCchhhc--hHHHHHHHhccCCeEEecCC
Confidence 234554222 24666666666677777765
No 399
>KOG0633|consensus
Probab=81.65 E-value=16 Score=30.26 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=82.4
Q ss_pred eEEEeCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCC----CCHHHHHH---------HHHHHHcc----CCCCEE
Q psy9711 26 TIIAGTYCESTRATIDLTQKA-AKAGANAALILCPYYFQKK----MTEDLIYE---------HFISVADN----SPIPVI 87 (198)
Q Consensus 26 pvi~gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~----~~~~~i~~---------y~~~i~~~----~~~pi~ 87 (198)
-+.+|||+ +|.|+.+-++ -.-|=+-++..||.|.-.+ ..+.++++ -..+|++- +.+.++
T Consensus 88 nic~GvGs---DE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds~iK~~ 164 (375)
T KOG0633|consen 88 NICVGVGS---DELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDSKIKCI 164 (375)
T ss_pred ceEEecCc---HHHHHHHHhheecCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccHHHHHHHHhccccceEE
Confidence 36778886 5666665544 4668899999999985432 11211111 12333332 345566
Q ss_pred EEeCCCC-cccccCHHHHHHHHcCC--CEEEEeeC--CHHH---HHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeEEe
Q psy9711 88 IYNNTFV-TNIDISVDTLVKLAHHE--NIRGVKDT--DNIK---LANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGIN 159 (198)
Q Consensus 88 lYn~P~~-tg~~l~~~~l~~L~~~p--~i~giK~s--d~~~---~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~is 159 (198)
+-..|.. ||..+..+.+.++.++| .+|-+-+. |+.. -..+.. ..+++.++.-. +-..|-.|.=-
T Consensus 165 F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~--kYpNLivlqTl------SKsfGLAGiRv 236 (375)
T KOG0633|consen 165 FLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVK--KYPNLIVLQTL------SKSFGLAGIRV 236 (375)
T ss_pred EEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhH--hCCceeehhhh------hhhcCcceeEe
Confidence 6666665 78899999999999998 45555555 5432 123332 35676655321 23456666655
Q ss_pred cccccchHHHHHHHHHHHc
Q psy9711 160 ALSAVLGGPICELYDLAKA 178 (198)
Q Consensus 160 ~~~n~~P~~~~~l~~~~~~ 178 (198)
|. +.+|..+.++..++++
T Consensus 237 G~-~~~~~~ia~iln~~Ka 254 (375)
T KOG0633|consen 237 GY-GAFPLSIAEILNRAKA 254 (375)
T ss_pred ec-ccccHHHHHHHHhccC
Confidence 54 3566666666665554
No 400
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=81.62 E-value=8 Score=32.09 Aligned_cols=56 Identities=11% Similarity=-0.104 Sum_probs=30.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711 33 CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII 88 (198)
Q Consensus 33 ~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l 88 (198)
.-+.+...+++++..+.|+|++++..-.-.-+++|.+|-.+..+.+.+.+ ++||+.
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~ 79 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYT 79 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 34455556666666666666666653332222233666666666665554 256554
No 401
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=81.58 E-value=19 Score=29.78 Aligned_cols=16 Identities=6% Similarity=-0.124 Sum_probs=7.8
Q ss_pred cccccchHHHHHHHHH
Q psy9711 160 ALSAVLGGPICELYDL 175 (198)
Q Consensus 160 ~~~n~~P~~~~~l~~~ 175 (198)
+.+|..-+.++.+++.
T Consensus 242 ~aGN~~tE~lv~~l~~ 257 (279)
T cd07947 242 RTGNCPLEAMVIEYAQ 257 (279)
T ss_pred cccchhHHHHHHHHHH
Confidence 3445555555544443
No 402
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=81.57 E-value=35 Score=29.67 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=23.7
Q ss_pred CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
+.|.+.+..- .+-+.+.++.++|+++|+.++++.
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlT 155 (381)
T PRK11197 121 KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFT 155 (381)
T ss_pred CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3345555421 234566788999999999999995
No 403
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=81.49 E-value=15 Score=31.57 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC-C---C-----------CHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK-K---M-----------TEDL 70 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~-~---~-----------~~~~ 70 (198)
-+|.++.+++++.+.+. +-.| ......+.+.+....+.|++.....++-..|.-.+. . . ....
T Consensus 9 ~~~~~~~~~lL~~A~~~-~yAV-gAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~ 86 (357)
T TIGR01520 9 VITGDDVHKLFQYAKEN-NFAI-PAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIA 86 (357)
T ss_pred ccCHHHHHHHHHHHHHC-CceE-EEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHH
Confidence 46889999999988776 3333 334555788888899999999999999888753221 0 0 0123
Q ss_pred HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 71 IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 71 i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
+..+.+.+++.+++||.++-.- |.++..+.+.+..+.
T Consensus 87 ~~~~v~~~Ae~a~VPValHLDH---g~~~~~~~i~~ai~a 123 (357)
T TIGR01520 87 GAHHVHSIAEHYGVPVVLHTDH---CAKKLLPWVDGLLEA 123 (357)
T ss_pred HHHHHHHHHHHCCCCEEEECCC---CCCcchHHHHHHHHh
Confidence 8889999999999999999753 344443556666543
No 404
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=81.48 E-value=30 Score=28.89 Aligned_cols=106 Identities=9% Similarity=0.065 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHh-cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAK-AGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~-~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.++-.+.++.+++.. ++.+.+=. ++-+.+++++.++..++ .|.+-..+--|. +. . +-++.+.++++
T Consensus 136 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iEqP~---~~--~----~~~~~l~~~~~ 206 (307)
T TIGR01927 136 ELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLEEPL---PD--A----DEMSAFSEATG 206 (307)
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEeCCC---CC--H----HHHHHHHHhCC
Confidence 3445566777777766 57777755 45678888888888875 444545566665 22 2 56777888888
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~ 128 (198)
+||.+=.. ..+...+.++.+. ..++-+|-+ .+....++.
T Consensus 207 ~Pia~dEs------~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~ 250 (307)
T TIGR01927 207 TAIALDES------LWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLA 250 (307)
T ss_pred CCEEeCCC------cCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHH
Confidence 99877442 2456777787743 578888888 455554444
No 405
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=81.47 E-value=12 Score=29.56 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK 64 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~ 64 (198)
.++++.+.+..++||+++-|=.+.+++.+.. +.|+|+|++........
T Consensus 145 ~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l----~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 145 FALVPEVRDAVDIPVIAAGGIADGRGIAAAL----ALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHHHHHHH----HcCCcEEEEchhhhcCc
Confidence 4556666554488998855533333333323 47999999998887654
No 406
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=81.40 E-value=26 Score=28.14 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEe
Q psy9711 38 ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK 117 (198)
Q Consensus 38 ~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK 117 (198)
...+.++..+++|+.+-+.+.|.- +-+.+. .+.+.++.=+++=-+|+..|..+-++++.++.
T Consensus 96 ~~~~~i~~Ik~~G~kaGlalnP~T------~~~~l~---~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~--------- 157 (229)
T PRK09722 96 QAFRLIDEIRRAGMKVGLVLNPET------PVESIK---YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIA--------- 157 (229)
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCC------CHHHHH---HHHHhcCEEEEEEEcCCCcchhccHHHHHHHH---------
Confidence 344555666777888777777751 222222 22334454444555688888888888888774
Q ss_pred eCCHHHHHHHHhhcCCCCeEE--EecCh-hhHHHHhhcCCCeEEecccccch--HHHHHHHHHHH
Q psy9711 118 DTDNIKLANMANQTKDLNFSV--FAGSA-GYLLSGLLVGCAGGINALSAVLG--GPICELYDLAK 177 (198)
Q Consensus 118 ~sd~~~~~~~~~~~~~~~~~v--~~G~d-~~~~~~l~~G~~G~is~~~n~~P--~~~~~l~~~~~ 177 (198)
++++++. ..+.++.+ =.|-. +.+.....+|++.+++|.+.+|- +-..+.++.++
T Consensus 158 -----~lr~~~~-~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~ 216 (229)
T PRK09722 158 -----ELKALRE-RNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMT 216 (229)
T ss_pred -----HHHHHHH-hcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHH
Confidence 3344442 22334333 23333 35557778999999999764542 22445555554
No 407
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=81.31 E-value=21 Score=29.53 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhc---C--CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 12 KLKIISTLRQET---K--KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 12 r~~l~~~~~~~~---~--~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
+..+.+.+.+++ + ..++..-+..+....+..++.+...|+|++++.|+- ++.+..-.+... ..++||
T Consensus 48 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d-------~~~~~~~v~~a~-~aGIpV 119 (322)
T COG1879 48 FQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVD-------PDALTPAVKKAK-AAGIPV 119 (322)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCC-------hhhhHHHHHHHH-HCCCcE
Confidence 444555555555 3 234444455788889999999999999999998774 455555555554 358999
Q ss_pred EEEeCCC
Q psy9711 87 IIYNNTF 93 (198)
Q Consensus 87 ~lYn~P~ 93 (198)
+.+|.+.
T Consensus 120 v~~d~~~ 126 (322)
T COG1879 120 VTVDSDI 126 (322)
T ss_pred EEEecCC
Confidence 9999853
No 408
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=81.31 E-value=19 Score=29.51 Aligned_cols=73 Identities=4% Similarity=-0.032 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhc--CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKA--GANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~--Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
+.++++.+.+++ +.-+++..+..+.+...+..+...+. ++|++++.+.. . . .+ +..+.+ ...++|+
T Consensus 15 ~~~~~~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~-~--~--~~---~~~~~~-~~~giPv 85 (305)
T cd06324 15 WNSVARFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEK-S--V--AP---ELLRLA-EGAGVKL 85 (305)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCc-c--c--hH---HHHHHH-HhCCCeE
Confidence 444555444444 66666655566777788888888898 99999996432 1 1 22 223333 3478999
Q ss_pred EEEeCCC
Q psy9711 87 IIYNNTF 93 (198)
Q Consensus 87 ~lYn~P~ 93 (198)
+++|.+.
T Consensus 86 V~~~~~~ 92 (305)
T cd06324 86 FLVNSGL 92 (305)
T ss_pred EEEecCC
Confidence 9999753
No 409
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=81.14 E-value=8.4 Score=32.14 Aligned_cols=47 Identities=15% Similarity=-0.056 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
.+...+++++..+.|++++++..-.-..+++|.+|-.+..+.+.+.+
T Consensus 27 ~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~ 73 (303)
T PRK03620 27 EAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETT 73 (303)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh
Confidence 34444444444444455444432221111122444444444444433
No 410
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=81.13 E-value=35 Score=30.21 Aligned_cols=87 Identities=23% Similarity=0.219 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHHccC
Q psy9711 12 KLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVADNS 82 (198)
Q Consensus 12 r~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~~~~ 82 (198)
..+.++.+.+.. ++||++|-.. + .+.++++.++|||++-+. .|-....+ ..+-..+....+.++..
T Consensus 252 ~~~~i~~i~~~~~~~~vi~G~v~-t----~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~ 326 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIAGNVA-T----AEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQS 326 (450)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCC-C----HHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhc
Confidence 345566666655 8999997654 2 345667778899999776 35432221 01444555566666667
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
++||+- -.|+.-+.+..+-|+
T Consensus 327 ~vpvia-----dGGi~~~~di~kAla 347 (450)
T TIGR01302 327 GIPVIA-----DGGIRYSGDIVKALA 347 (450)
T ss_pred CCeEEE-----eCCCCCHHHHHHHHH
Confidence 888765 346666667667676
No 411
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=80.98 E-value=11 Score=30.95 Aligned_cols=78 Identities=19% Similarity=0.180 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCCEEEEcCCC------Cc-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHH----HHHHc
Q psy9711 41 DLTQKAAKAGANAALILCPY------YF-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTL----VKLAH 109 (198)
Q Consensus 41 ~~a~~a~~~Gad~v~~~~P~------y~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l----~~L~~ 109 (198)
-.|+.+.++|+|.+++.... |. ....|-++++.|-+.|.+.++-++++-|.|..+ +..+++.- .||.+
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~s-y~~s~e~av~nA~rl~k 105 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGS-YQASPEQAVRNAGRLMK 105 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTS-STSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccc-ccCCHHHHHHHHHHHHH
Confidence 45778889999999998643 11 112469999999999999999999999999743 43566544 35556
Q ss_pred CCCEEEEeeC
Q psy9711 110 HENIRGVKDT 119 (198)
Q Consensus 110 ~p~i~giK~s 119 (198)
.-+.-++|.+
T Consensus 106 e~GadaVKlE 115 (261)
T PF02548_consen 106 EAGADAVKLE 115 (261)
T ss_dssp TTT-SEEEEE
T ss_pred hcCCCEEEec
Confidence 6789999998
No 412
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=80.96 E-value=12 Score=31.16 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
+++++.+.+. +- -+......+.+.+....+.|++.++..++-..|.-.+.. ..+.+..+.+..++.+++||.++-.-
T Consensus 7 ~~~l~~A~~~-~y-aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~-g~~~~~~~~~~~a~~~~VPValHLDH 83 (284)
T PRK12737 7 KNMLKKAQAE-GY-AVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYA-GTDYIVAIAEVAARKYNIPLALHLDH 83 (284)
T ss_pred HHHHHHHHHc-Cc-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhC-CHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3455554443 22 223445567888888999999999999988888765543 36778888999999999999998754
Q ss_pred CCcccccCHHHHHHHHcC
Q psy9711 93 FVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~ 110 (198)
.. +.+.+.+-.+.
T Consensus 84 ~~-----~~e~i~~ai~~ 96 (284)
T PRK12737 84 HE-----DLDDIKKKVRA 96 (284)
T ss_pred CC-----CHHHHHHHHHc
Confidence 32 34555555443
No 413
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=80.95 E-value=34 Score=29.12 Aligned_cols=140 Identities=15% Similarity=0.128 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH----cC-CCEEE
Q psy9711 41 DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIRG 115 (198)
Q Consensus 41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~~-p~i~g 115 (198)
+..+.|.+.|+|.+-+... .+ ..+.+.++.+ .+...++-+..+=. .+ ...+++.+.+++ +. +..+.
T Consensus 92 ~dl~~a~~~gvd~iri~~~----~~-e~~~~~~~i~-~ak~~G~~v~~~l~--~a-~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATH----CT-EADVSEQHIG-LARELGMDTVGFLM--MS-HMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred HHHHHHHHcCCCEEEEEEe----cc-hHHHHHHHHH-HHHHCCCeEEEEEE--ec-cCCCHHHHHHHHHHHHhCCCCEEE
Confidence 4456777888888776532 22 1333444444 44445666555432 12 245777776655 33 68999
Q ss_pred EeeC----CHHHHHHHHh---hcCCCCeEE-EecChh------hHHHHhhcCC---CeEEecc----cccchHHHHHHHH
Q psy9711 116 VKDT----DNIKLANMAN---QTKDLNFSV-FAGSAG------YLLSGLLVGC---AGGINAL----SAVLGGPICELYD 174 (198)
Q Consensus 116 iK~s----d~~~~~~~~~---~~~~~~~~v-~~G~d~------~~~~~l~~G~---~G~is~~----~n~~P~~~~~l~~ 174 (198)
++|| .+..+.++++ +..+++..+ |-+.+. ..+.++..|+ ||.+.|+ +|..-|.++.+.+
T Consensus 163 i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~ 242 (337)
T PRK08195 163 VVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLD 242 (337)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHH
Confidence 9999 5665554442 233344443 445543 2345677886 4444443 3666677776665
Q ss_pred HH--HcC-CHHHHHHHHH
Q psy9711 175 LA--KAG-KWEEAMKLQH 189 (198)
Q Consensus 175 ~~--~~g-d~~~A~~l~~ 189 (198)
.. ..| |.++..++.+
T Consensus 243 ~~g~~tgidl~~l~~~a~ 260 (337)
T PRK08195 243 RMGWETGVDLYKLMDAAE 260 (337)
T ss_pred hcCCCCCcCHHHHHHHHH
Confidence 53 222 5555555444
No 414
>PLN02321 2-isopropylmalate synthase
Probab=80.91 E-value=27 Score=32.43 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHHHHhc---CC-eEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET---KK-TIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~-pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
...|.+|-.+.+..+++.+ +. .|..+. +..+.+..++.++.+.++|++.+.+.--. ... +|.++.+.++.
T Consensus 201 l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTv-G~~--~P~~v~~li~~ 277 (632)
T PLN02321 201 LRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTV-GYT--LPSEFGQLIAD 277 (632)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccc-cCC--CHHHHHHHHHH
Confidence 3578889888888888887 34 355554 44568899999999999999987665433 333 39999999999
Q ss_pred HHccCC----CCEEEE
Q psy9711 78 VADNSP----IPVIIY 89 (198)
Q Consensus 78 i~~~~~----~pi~lY 89 (198)
+.+.++ +++-+|
T Consensus 278 l~~~~~~~~~v~i~vH 293 (632)
T PLN02321 278 IKANTPGIENVIISTH 293 (632)
T ss_pred HHHhcCCCCCceEEEE
Confidence 988763 345554
No 415
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=80.84 E-value=29 Score=28.28 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=49.5
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHcc-CCCC--EEE
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADN-SPIP--VII 88 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~-~~~p--i~l 88 (198)
++-+|.++.+.+++.++...+.|||.+=+.-|+-.+.. .+-+.+++..+++.+. +++| ++.
T Consensus 15 y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~ 94 (256)
T TIGR00262 15 FVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLT 94 (256)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 34578899999999999999999999999999843321 2356777888888765 6677 456
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
|.+|
T Consensus 95 Y~Np 98 (256)
T TIGR00262 95 YYNL 98 (256)
T ss_pred eccH
Confidence 6667
No 416
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=80.73 E-value=26 Score=30.12 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEEEe
Q psy9711 14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~lYn 90 (198)
+.++.+++..++||++ |+.+. +.++.+.++|+|++.+..--=-... +...-++...+|.++. ++||+.
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~------~dA~~a~~~G~d~I~vsnhGGr~ld-~~~~~~~~l~~i~~a~~~~i~vi~-- 281 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSP------EDADVAINAGADGIWVSNHGGRQLD-GGPASFDSLPEIAEAVNHRVPIIF-- 281 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCH------HHHHHHHHcCCCEEEEeCCCCccCC-CCchHHHHHHHHHHHhCCCCeEEE--
Q ss_pred CCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711 91 NTFVTNIDISVDTLVKLAHHENIRGV 116 (198)
Q Consensus 91 ~P~~tg~~l~~~~l~~L~~~p~i~gi 116 (198)
..|+.=..+.++-|+-=-.-|++
T Consensus 282 ---dGGIr~g~Di~kaLalGA~~V~i 304 (351)
T cd04737 282 ---DSGVRRGEHVFKALASGADAVAV 304 (351)
T ss_pred ---ECCCCCHHHHHHHHHcCCCEEEE
No 417
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=29 Score=28.22 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCC-CcCCCCCHHHHHHHHHHHHc---cCCCCEEEEeCCCCcccc-cCHHHHHHHH--c
Q psy9711 37 RATIDLTQKAAKAGANAALILCPY-YFQKKMTEDLIYEHFISVAD---NSPIPVIIYNNTFVTNID-ISVDTLVKLA--H 109 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~-y~~~~~~~~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~~-l~~~~l~~L~--~ 109 (198)
+-+.+.+..|.+.|||.+++--|. |.+.. ...+..+...+.. ..++.++.+|.|.-.... ....++.++. +
T Consensus 44 d~t~~vi~~Ai~~~ad~ii~HHplif~~~~--~~~~~~~~~~~i~~li~~~I~ly~~HtnlD~~~~g~N~a~~~~l~~~~ 121 (250)
T COG0327 44 DATLAVLDEAIELGADLLIVHHPLIFWPVK--SLAIDGPKGKRIKALIQNDINLYAAHTNLDAHPEGGNDALAAALLGAE 121 (250)
T ss_pred eCCHHHHHHHHHCCCCEEEEcCchhcCCCc--cccccchHHHHHHHHHhCCCeEEEcccccccccccccHHHHHHhcCcc
Confidence 444666778889999999999994 44433 2223333333333 247999999987542222 2344555554 2
Q ss_pred C--C------CEEEEeeC-CHHHHHHHHhhc--------------CCCCeEEEecChh-hHHHHhhcCCCeEEeccc
Q psy9711 110 H--E------NIRGVKDT-DNIKLANMANQT--------------KDLNFSVFAGSAG-YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 110 ~--p------~i~giK~s-d~~~~~~~~~~~--------------~~~~~~v~~G~d~-~~~~~l~~G~~G~is~~~ 162 (198)
. + .+.=+|.. ++..+.+.+++. .-.++.|.+|... .+..+...|+|-+++|=-
T Consensus 122 ~~~~~~~~~g~~g~~~~~~~l~~l~~~i~~~l~~~~~~~~~~~~~~i~rvAv~~G~g~~~~~~a~~~gvD~~iTGd~ 198 (250)
T COG0327 122 ELPPFGEGLGRVGELKEPTTLEELAERIKAKLGRPPLRVVKDGSEEIKRVAVCSGSGQGFLSEAAAEGVDAYITGDL 198 (250)
T ss_pred cccccccccceEEEeCCCCCHHHHHHHHHHHcCCCCEEEccCccccCceEEEEeCCChHHHHHHHHcCCCEEEECCC
Confidence 2 2 12223333 444443333211 1256888999884 555678899999999853
No 418
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=80.73 E-value=23 Score=27.94 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
-..++++-+.+++ +.-++...+..+.++..+..+...+.++|++++.+... ++..... +....++|++
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~------~~~~~~~---l~~~~~ipvV 83 (269)
T cd06275 13 FFAEVVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEY------DQPLLAM---LERYRHIPMV 83 (269)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCC------ChHHHHH---HHhcCCCCEE
Confidence 3445555554444 66666666666788888888888889999999986531 2222222 2234589999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.+.+
T Consensus 84 ~i~~~ 88 (269)
T cd06275 84 VMDWG 88 (269)
T ss_pred EEecc
Confidence 99875
No 419
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=80.66 E-value=8.2 Score=32.35 Aligned_cols=55 Identities=16% Similarity=0.214 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711 34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII 88 (198)
Q Consensus 34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l 88 (198)
-+.+...+++++..+.|++++++.--.-..+++|.+|-.+..+.+.+.+ ++||+.
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~ 82 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFV 82 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 3445555566666666666666554332222233666666655555544 255554
No 420
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=80.60 E-value=21 Score=28.31 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=18.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
|.|||-|..+ +.++.-+.++.+++.|.+.+-+.
T Consensus 133 R~~vIPg~nd-~~e~i~~ia~~l~~l~~~~~~ll 165 (213)
T PRK10076 133 RLPLIPGFTL-SRENMQQALDVLIPLGIKQIHLL 165 (213)
T ss_pred EEEEECCCCC-CHHHHHHHHHHHHHcCCceEEEe
Confidence 5566666553 34555555566656666655444
No 421
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=80.58 E-value=30 Score=28.29 Aligned_cols=60 Identities=25% Similarity=0.336 Sum_probs=34.2
Q ss_pred eEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC-------HHHHHHHHHHHHccCCCCEEE
Q psy9711 26 TIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMT-------EDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 26 pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~-------~~~i~~y~~~i~~~~~~pi~l 88 (198)
.+|+|- .-.+.+.+++.|+++++.|+. +.-+++++|.-+ .++-+++.+++++..++|++-
T Consensus 27 ~~IAGpc~ie~~~~~~~~A~~lk~~~~k---~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t 94 (260)
T TIGR01361 27 IVIAGPCSVESEEQIMETARFVKEAGAK---ILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVT 94 (260)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHHHHHH---hccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEE
Confidence 356663 333566677777777777665 222433333201 344556666777777777764
No 422
>TIGR03586 PseI pseudaminic acid synthase.
Probab=80.55 E-value=15 Score=31.24 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
.+++.+.+. +.||+..+|..+.+|...-+....+.|..-++++ ...-|+.. ..+-=+.-...+-+..++||.+-+.
T Consensus 125 ~LL~~va~~-gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~-~~~~nL~~i~~lk~~f~~pVG~SDH 201 (327)
T TIGR03586 125 PLIRYVAKT-GKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAP-LEDANLRTIPDLAERFNVPVGLSDH 201 (327)
T ss_pred HHHHHHHhc-CCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCC-cccCCHHHHHHHHHHhCCCEEeeCC
Confidence 345554443 8999999988888888888888888888545543 21111111 0222233344444555788877764
No 423
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=80.34 E-value=18 Score=30.28 Aligned_cols=43 Identities=12% Similarity=0.022 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhc
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKA 49 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~ 49 (198)
+|.+|..+..+.-++.. ++-+++-=.-.+++|+....+.+++.
T Consensus 133 ~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~ 178 (304)
T PRK09485 133 LSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEE 178 (304)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHh
Confidence 55566555544444332 44444433334566665555555533
No 424
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=80.32 E-value=36 Score=29.00 Aligned_cols=95 Identities=8% Similarity=0.074 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc--CCC
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN--SPI 84 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~--~~~ 84 (198)
++-.+.++.++++. ++.+++=+ ++-+.++++++++..++.|.. .+ -.|- +.+=++-|+.|.++ +++
T Consensus 166 ~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--~~-----EeP~--~~~d~~~~~~l~~~~~~~i 236 (352)
T cd03328 166 RRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVT--WF-----EEPV--SSDDLAGLRLVRERGPAGM 236 (352)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcc--hh-----hCCC--ChhhHHHHHHHHhhCCCCC
Confidence 44455566666655 55666533 334667777777777665432 12 2222 22224666778888 778
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
||..=.. ..+...+.++.+ .-.++-+|-+
T Consensus 237 PIa~gE~------~~~~~~~~~li~~~a~div~~d~~ 267 (352)
T cd03328 237 DIAAGEY------AYTLAYFRRLLEAHAVDVLQADVT 267 (352)
T ss_pred CEEeccc------ccCHHHHHHHHHcCCCCEEecCcc
Confidence 8876331 246777888874 4577777777
No 425
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=80.20 E-value=33 Score=28.84 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=63.8
Q ss_pred CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcC------------CCCcCCCCCHH--HHH----------------
Q psy9711 24 KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILC------------PYYFQKKMTED--LIY---------------- 72 (198)
Q Consensus 24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~------------P~y~~~~~~~~--~i~---------------- 72 (198)
++-++.|+ ++.....-++..+...++|+..+.+.- +.... .|+. +++
T Consensus 99 kia~~l~iEg~~~l~~~~~~l~~~~~lGvR~i~Lt~n~~N~~a~g~~~~~~~G--Lt~~G~~vv~~mn~lGmiiDvSH~s 176 (309)
T cd01301 99 KLAAIISIEGAHALGGDLALLRLLYRLGVRYLGLTWNGDNKFADGCGEKRGGG--LTPFGKELVREMNRLGIIIDLSHLS 176 (309)
T ss_pred CeEEEEEEeccccccCCHHHHHHHHHcCCeEEEeeecCCCccccCCCCCCCCC--CCHHHHHHHHHHHHcCCEEEcCCCC
Confidence 56777787 445666789999999999998777761 11111 2233 232
Q ss_pred -HHHHHHHccCCCCEEEEeCCCC----cccccCHHHHHHHHcCCCEEEEe
Q psy9711 73 -EHFISVADNSPIPVIIYNNTFV----TNIDISVDTLVKLAHHENIRGVK 117 (198)
Q Consensus 73 -~y~~~i~~~~~~pi~lYn~P~~----tg~~l~~~~l~~L~~~p~i~giK 117 (198)
+-|.++++.+..||+.-|.-.+ ...+++.+.+++|++...|+|+=
T Consensus 177 ~~~~~dv~~~s~~PviaSHsn~ral~~h~RNltD~~i~~ia~~GGvigi~ 226 (309)
T cd01301 177 ERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQLKAIAETGGVIGVN 226 (309)
T ss_pred HHHHHHHHHhcCCCEEEeccChHHhcCCCCCCCHHHHHHHHHcCCEEEEe
Confidence 2357777788899997664222 23479999999999999999974
No 426
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=80.19 E-value=31 Score=28.27 Aligned_cols=89 Identities=18% Similarity=0.304 Sum_probs=59.7
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHH-ccCCCCEEE--
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVA-DNSPIPVII-- 88 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~-~~~~~pi~l-- 88 (198)
++-.|.++.+.+++.++...+.|||.+=+.-|+-.+.. .+.+++++..+++- +..+.|+++
T Consensus 15 yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~ 94 (259)
T PF00290_consen 15 YITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT 94 (259)
T ss_dssp EEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 34579999999999999999999999999988754321 34567777788888 666888875
Q ss_pred EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
|-+|- .....+-+.+-++--.+.|+-..
T Consensus 95 Y~N~i---~~~G~e~F~~~~~~aGvdGlIip 122 (259)
T PF00290_consen 95 YYNPI---FQYGIERFFKEAKEAGVDGLIIP 122 (259)
T ss_dssp -HHHH---HHH-HHHHHHHHHHHTEEEEEET
T ss_pred eccHH---hccchHHHHHHHHHcCCCEEEEc
Confidence 44442 12345555544444467888777
No 427
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=80.12 E-value=2.5 Score=34.55 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+..||+-+--.|. .+..++++.+++.||+++.+.. |.||..+ .++.+.+.+++++|+.-=|+
T Consensus 47 ~~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs------~~dL~~v~~~~~~PvL~KDF 117 (254)
T PF00218_consen 47 RISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGGS------LEDLRAVRKAVDLPVLRKDF 117 (254)
T ss_dssp S-EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHHH------HHHHHHHHHHSSS-EEEES-
T ss_pred CCeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCCC------HHHHHHHHHHhCCCcccccC
Confidence 7888887743332 5889999999999999999984 5565543 46778888889999987554
No 428
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=80.04 E-value=28 Score=27.55 Aligned_cols=73 Identities=7% Similarity=0.072 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhc----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 12 KLKIISTLRQET----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 12 r~~l~~~~~~~~----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
+.++.+.+.+++ +.-++...+..+.+...+..+.+.+.++|++++.++... ...+..+.+ ...++|++
T Consensus 14 ~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-------~~~~~~~~l-~~~~iPvv 85 (272)
T cd06301 14 LTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTA-------ATAPIVKAA-NAAGIPLV 85 (272)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchh-------hhHHHHHHH-HHCCCeEE
Confidence 334444444433 566776666677888889999999999999999865421 111333443 46789999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.+.+
T Consensus 86 ~~~~~ 90 (272)
T cd06301 86 YVNRR 90 (272)
T ss_pred EecCC
Confidence 98863
No 429
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=79.98 E-value=29 Score=27.76 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.++..+++.---|-+++- ++...-+.++..++.|+.+-++..|- |+-+.+ +.+.+.+++=++.--+|+
T Consensus 75 ~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~G~kaGv~lnP~------Tp~~~i---~~~l~~vD~VllMsVnPG 143 (220)
T COG0036 75 RYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPA------TPLEAL---EPVLDDVDLVLLMSVNPG 143 (220)
T ss_pred HHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHcCCeEEEEECCC------CCHHHH---HHHHhhCCEEEEEeECCC
Confidence 3444444442112333543 44445555566667799999998875 355444 445556677777888899
Q ss_pred CcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEEEecChh-hHHHHhhcCCCeEEecccccch
Q psy9711 94 VTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSVFAGSAG-YLLSGLLVGCAGGINALSAVLG 166 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v~~G~d~-~~~~~l~~G~~G~is~~~n~~P 166 (198)
..|..+.++++.+|. ++++++.......+.|=.|... .......+|++-+++|.+-|-.
T Consensus 144 fgGQ~Fi~~~l~Ki~--------------~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 144 FGGQKFIPEVLEKIR--------------ELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred CcccccCHHHHHHHH--------------HHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCC
Confidence 999999999999884 3334442111122333344443 4445566899999988864433
No 430
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=79.95 E-value=32 Score=29.40 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=69.0
Q ss_pred HHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHHccCC
Q psy9711 14 KIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVADNSP 83 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~~~~~ 83 (198)
+.++.+.+.. +.+||+| |.+ -+.++.+.++|||++.+. -|--...+ ..|-..+....+.+...+
T Consensus 139 ~~ik~ir~~~p~~~viaGNV~T------~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~ 212 (343)
T TIGR01305 139 EFVKLVREAFPEHTIMAGNVVT------GEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLK 212 (343)
T ss_pred HHHHHHHhhCCCCeEEEecccC------HHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCC
Confidence 4555555555 7889998 764 245566777899999766 33322211 124444555555555557
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEe--eC-CHHHHHHHHhhcCCCCeEEEecChhh
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVK--DT-DNIKLANMANQTKDLNFSVFAGSAGY 145 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK--~s-d~~~~~~~~~~~~~~~~~v~~G~d~~ 145 (198)
.||+. -.|+.-+-+..+-|+-=-..+.+= .. .-+--.+++ ...+..+..|-|..+.
T Consensus 213 v~VIa-----DGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i-~~~G~~~K~yrGMgS~ 271 (343)
T TIGR01305 213 GHIIS-----DGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVI-ERNGRKFKLFYGMSSD 271 (343)
T ss_pred CeEEE-----cCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeE-eECCEEEEEEeccchH
Confidence 88887 478888889999888433333322 11 111111223 2346677788777663
No 431
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=79.94 E-value=21 Score=28.56 Aligned_cols=70 Identities=10% Similarity=0.055 Sum_probs=43.5
Q ss_pred HHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
++++.+.+++ +..++.-.+. +.++..+..+.+...++|++++.++- .+.....++.+ ...++|++++|
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~-------~~~~~~~~~~~-~~~~iPvV~~~ 86 (289)
T cd01540 16 TEWKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPD-------VKLGPAIVAKA-KAYNMKVVAVD 86 (289)
T ss_pred HHHHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCc-------hhhhHHHHHHH-HhCCCeEEEec
Confidence 4444444443 5556554444 56677788888888999999998643 11112334443 34789999998
Q ss_pred CC
Q psy9711 91 NT 92 (198)
Q Consensus 91 ~P 92 (198)
.+
T Consensus 87 ~~ 88 (289)
T cd01540 87 DR 88 (289)
T ss_pred CC
Confidence 53
No 432
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=79.93 E-value=17 Score=30.23 Aligned_cols=89 Identities=10% Similarity=0.141 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
+++++.+.+. +-.| ......+.+.+....+.|++.+...++-..|...+.. .-+.+....+.+++.+++||.++-.-
T Consensus 7 k~iL~~A~~~-~yAV-~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~a~~~~VPValHLDH 83 (286)
T PRK12738 7 KYLLQDAQAN-GYAV-PAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHI-ALEEIYALCSAYSTTYNMPLALHLDH 83 (286)
T ss_pred HHHHHHHHHC-CceE-EEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC-CHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4455555544 3333 3345557888888889999999998888877655432 37789999999999999999998754
Q ss_pred CCcccccCHHHHHHHHc
Q psy9711 93 FVTNIDISVDTLVKLAH 109 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~ 109 (198)
+. +.+.+.+-.+
T Consensus 84 g~-----~~e~i~~ai~ 95 (286)
T PRK12738 84 HE-----SLDDIRRKVH 95 (286)
T ss_pred CC-----CHHHHHHHHH
Confidence 32 3555555444
No 433
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=79.88 E-value=25 Score=28.37 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=64.1
Q ss_pred HHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE---eCCCCccc-ccCHHHHHHHHc---CCCEEEE
Q psy9711 44 QKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY---NNTFVTNI-DISVDTLVKLAH---HENIRGV 116 (198)
Q Consensus 44 ~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY---n~P~~tg~-~l~~~~l~~L~~---~p~i~gi 116 (198)
+..+++|+..+.+..||-... ++.+.+||+ ..++.|.-. +......+ .++++.+.+++. .|..-+|
T Consensus 113 ~AL~alg~~RIalvTPY~~~v---~~~~~~~l~----~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 113 DGLAALGVRRISLLTPYTPET---SRPMAQYFA----VRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred HHHHHcCCCEEEEECCCcHHH---HHHHHHHHH----hCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 445678999999999974322 555666664 445554433 32221111 478999888873 6777676
Q ss_pred eeC--CHHH---HHHHHhhcCCCCeEEEecChhhHHHHh-hcCCCeEEeccccc
Q psy9711 117 KDT--DNIK---LANMANQTKDLNFSVFAGSAGYLLSGL-LVGCAGGINALSAV 164 (198)
Q Consensus 117 K~s--d~~~---~~~~~~~~~~~~~~v~~G~d~~~~~~l-~~G~~G~is~~~n~ 164 (198)
=.+ ++.- +.++- +. -+..|++.+-..+-.++ ..|....+.+.+-+
T Consensus 186 fisCTnLrt~~vi~~lE-~~--lGkPVlsSNqat~W~~Lr~~G~~~~~~g~G~L 236 (239)
T TIGR02990 186 FLSCTALRAATCAQRIE-QA--IGKPVVTSNQATAWRCLRLCGDPDMRPGYGRL 236 (239)
T ss_pred EEeCCCchhHHHHHHHH-HH--HCCCEEEHHHHHHHHHHHHcCCCCCCCCCcCc
Confidence 666 4432 22222 22 23457777665444444 46777666666543
No 434
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=79.71 E-value=29 Score=27.58 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLR 20 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~ 20 (198)
..+.++|.++++.+.
T Consensus 74 ~~~~~~~~~ll~~~~ 88 (228)
T TIGR01093 74 PGNEEEYLEELKRAA 88 (228)
T ss_pred CCCHHHHHHHHHHHH
Confidence 567888888877763
No 435
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=79.66 E-value=5.2 Score=33.50 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+.+|+++-+..=.+-|||.+|+=|-.. ..+-.+.+.+.+++|+.-||.
T Consensus 231 N~~EAlrE~~lD~~EGAD~lMVKPal~---------YLDIi~~vk~~~~lP~~AYqV 278 (330)
T COG0113 231 NRREALREIELDIEEGADILMVKPALP---------YLDIIRRVKEEFNLPVAAYQV 278 (330)
T ss_pred CHHHHHHHHHhhHhcCCcEEEEcCCch---------HHHHHHHHHHhcCCCeEEEec
Confidence 457888888777788999999975442 235567788888999999995
No 436
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=79.66 E-value=51 Score=30.42 Aligned_cols=176 Identities=11% Similarity=0.093 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEe------CCCCc-HHHH-HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAG------TYCES-TRAT-IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~g------v~~~~-~~~~-i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
++.+++ +.++.+++.. +.++.+- ++..+ .+++ .+..+.+.+.|+|.+-+..+. + +-+.+....+.
T Consensus 59 ~~e~p~-e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~l----n-d~~~~~~ai~~ 132 (593)
T PRK14040 59 LGEDPW-ERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAM----N-DPRNLETALKA 132 (593)
T ss_pred cCCCHH-HHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeC----C-cHHHHHHHHHH
Confidence 444442 3344444555 6666332 22222 2333 456778899999998887533 2 12333333333
Q ss_pred HHccCCCC---EEEE-eCCCCcccccCHHHHHHH----HcC-CCEEEEeeC----CHHHHHHHHhh---cCCCCeEEEec
Q psy9711 78 VADNSPIP---VIIY-NNTFVTNIDISVDTLVKL----AHH-ENIRGVKDT----DNIKLANMANQ---TKDLNFSVFAG 141 (198)
Q Consensus 78 i~~~~~~p---i~lY-n~P~~tg~~l~~~~l~~L----~~~-p~i~giK~s----d~~~~~~~~~~---~~~~~~~v~~G 141 (198)
+ ...+.- .+-| ..|.. +++.+.++ .+. ...+.+||+ .+..+.++++. ..+-.+.+ -+
T Consensus 133 a-k~~G~~~~~~i~yt~~p~~-----~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~-H~ 205 (593)
T PRK14040 133 V-RKVGAHAQGTLSYTTSPVH-----TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHL-HC 205 (593)
T ss_pred H-HHcCCeEEEEEEEeeCCcc-----CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEE-EE
Confidence 3 334443 2334 33422 34444444 443 589999999 66666555532 22223433 33
Q ss_pred Chh------hHHHHhhcCCC---eEEeccc----ccchHHHHHHHHHHH---cCCHHHHHHHHHHhhchh
Q psy9711 142 SAG------YLLSGLLVGCA---GGINALS----AVLGGPICELYDLAK---AGKWEEAMKLQHRLVKPD 195 (198)
Q Consensus 142 ~d~------~~~~~l~~G~~---G~is~~~----n~~P~~~~~l~~~~~---~gd~~~A~~l~~~~~~l~ 195 (198)
++. ..+.++.+|++ +.++|++ |..-+.++...+... .=|.+...++.+.+.+++
T Consensus 206 Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~ 275 (593)
T PRK14040 206 HATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR 275 (593)
T ss_pred CCCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence 332 34567788964 4455544 332333333322110 015666666655555544
No 437
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=79.66 E-value=38 Score=28.96 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHh--cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 7 STEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAK--AGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~--~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
++.+||.+.++.+.... ++.|-+|+.. +-.+.++...+ +|+|.+.+=.-.-. .+.+++..+.|-+..
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~~----~d~er~~~L~~~~~g~D~iviD~AhGh-----s~~~i~~ik~ik~~~ 149 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTSD----ADFEKTKQILALSPALNFICIDVANGY-----SEHFVQFVAKAREAW 149 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCCH----HHHHHHHHHHhcCCCCCEEEEECCCCc-----HHHHHHHHHHHHHhC
Confidence 79999999998876444 4444334433 44556666665 59999988755422 566777777777666
Q ss_pred -CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------------CHHHHHHHHh---hcCCCCeEEEe-c-
Q psy9711 83 -PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------------DNIKLANMAN---QTKDLNFSVFA-G- 141 (198)
Q Consensus 83 -~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------------d~~~~~~~~~---~~~~~~~~v~~-G- 141 (198)
+++|+. |+..+++....|.+- ..-++|.. -.+++..+.. .....+..|+. |
T Consensus 150 P~~~vIa-------GNV~T~e~a~~Li~a-GAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGG 221 (346)
T PRK05096 150 PDKTICA-------GNVVTGEMVEELILS-GADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGG 221 (346)
T ss_pred CCCcEEE-------ecccCHHHHHHHHHc-CCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCC
Confidence 477775 556788888888752 33355532 1234444331 11122334443 2
Q ss_pred --ChhhHHHHhhcCCCeEEecc
Q psy9711 142 --SAGYLLSGLLVGCAGGINAL 161 (198)
Q Consensus 142 --~d~~~~~~l~~G~~G~is~~ 161 (198)
..+.+.-++.+|++.++.|.
T Consensus 222 i~~sGDI~KAlaaGAd~VMlGs 243 (346)
T PRK05096 222 CTVPGDVAKAFGGGADFVMLGG 243 (346)
T ss_pred cccccHHHHHHHcCCCEEEeCh
Confidence 12357788999999888664
No 438
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=79.64 E-value=16 Score=31.28 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC-C-CCHH------------HHHHHH
Q psy9711 10 EEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK-K-MTED------------LIYEHF 75 (198)
Q Consensus 10 ~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~-~-~~~~------------~i~~y~ 75 (198)
+|-+++++.+.+. +-.| ......+.+.+....+.|++.+...++-..|.-.+. . .+.+ .+..+.
T Consensus 2 ~~~k~iL~~A~~~-~yAV-~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (345)
T cd00946 2 DDVLKLFDYAKEN-GFAI-PAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHV 79 (345)
T ss_pred hHHHHHHHHHHHC-CceE-EEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHH
Confidence 4666777776655 3333 334556788888889999999999999888863221 1 0011 688999
Q ss_pred HHHHccCCCCEEEEeCCC
Q psy9711 76 ISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn~P~ 93 (198)
+.+++.+++||.++-.-.
T Consensus 80 ~~~A~~~~VPValHLDHg 97 (345)
T cd00946 80 RSMAEHYGVPVVLHTDHC 97 (345)
T ss_pred HHHHHHCCCCEEEECCCC
Confidence 999999999999997643
No 439
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=79.62 E-value=33 Score=28.16 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=57.9
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccCCCCE--EEE
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNSPIPV--IIY 89 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~~~pi--~lY 89 (198)
++-+|.++.+.+++.++...+.|||.+=+.-|+-.+.. .+-+.+++..+++.+..++|+ |-|
T Consensus 20 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y 99 (263)
T CHL00200 20 FITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTY 99 (263)
T ss_pred EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence 44578899999999999999999999999988854422 223456666677765567784 456
Q ss_pred eCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 90 NNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
-||-. ....+-+.+-++--++.|+-..
T Consensus 100 ~N~i~---~~G~e~F~~~~~~aGvdgviip 126 (263)
T CHL00200 100 YNPVL---HYGINKFIKKISQAGVKGLIIP 126 (263)
T ss_pred ccHHH---HhCHHHHHHHHHHcCCeEEEec
Confidence 56542 2233444444433445555544
No 440
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=79.53 E-value=20 Score=30.71 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=43.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC--CC----CcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC--PY----YFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~--P~----y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+.|+|-|+.+ +.+++-++++.++..++ .|-++| |. |-+|+ ++++.+ |+++....++++.+=.
T Consensus 259 ey~LIpGvND-s~e~a~~La~~l~~l~~-~VnLIPynp~~~~~~~~ps--~e~i~~-f~~~L~~~Gi~vtvR~ 326 (345)
T PRK14457 259 EYILLGGVND-LPEHAEELANLLRGFQS-HVNLIPYNPIDEVEFQRPS--PKRIQA-FQRVLEQRGVAVSVRA 326 (345)
T ss_pred EEEEECCcCC-CHHHHHHHHHHHhcCCC-eEEEecCCCCCCCCCCCCC--HHHHHH-HHHHHHHCCCeEEEeC
Confidence 5788889986 78999999999988876 355443 22 33444 665555 5666677789888754
No 441
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=79.48 E-value=38 Score=28.78 Aligned_cols=128 Identities=13% Similarity=0.126 Sum_probs=85.0
Q ss_pred CCeEEEeC-CCCcHHHHHHHHHHHHhcC-CCEEE--Ec-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711 24 KKTIIAGT-YCESTRATIDLTQKAAKAG-ANAAL--IL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 98 (198)
Q Consensus 24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~G-ad~v~--~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~ 98 (198)
+..++-.+ |+.+-+|+++.++.|.+++ -+-+= ++ .+.+..|. ..+.++--+.+.+ =++-++.|=.+
T Consensus 136 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd--~~~~v~aa~~L~~-~Gf~v~~yc~~------ 206 (326)
T PRK11840 136 KYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPD--MVETLKATEILVK-EGFQVMVYCSD------ 206 (326)
T ss_pred CCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccC--HHHHHHHHHHHHH-CCCEEEEEeCC------
Confidence 55665544 6667899999999999985 44332 23 34555565 8888888888874 36777777655
Q ss_pred cCHHHHHHHHcC--------CCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecC----hhhHHHHhhcCCCeEEeccccc
Q psy9711 99 ISVDTLVKLAHH--------ENIRGVKDT--DNIKLANMANQTKDLNFSVFAGS----AGYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 99 l~~~~l~~L~~~--------p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~----d~~~~~~l~~G~~G~is~~~n~ 164 (198)
++.+-++|++. |..+|---+ |+..++.+++ . +++.|+.|- .+....++.+|++|+...++-.
T Consensus 207 -d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e-~--~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 207 -DPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVE-G--ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred -CHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHH-c--CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 36667777753 234442223 7777777663 2 446666543 3467788999999998776643
No 442
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=79.44 E-value=40 Score=29.03 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHhc------CCeEEEeCC---------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC----CCCH
Q psy9711 8 TEEEKLKIISTLRQET------KKTIIAGTY---------CESTRATIDLTQKAAKAGANAALILCPYYFQK----KMTE 68 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~------~~pvi~gv~---------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~----~~~~ 68 (198)
|.+.|.+++..++++. +++|.+=++ ..+.++++++++.+++. +|.+-+..-.+... ...+
T Consensus 195 slenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~ 273 (370)
T cd02929 195 SLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYP 273 (370)
T ss_pred ChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCC
Confidence 5566776666555554 345544222 23578899999998875 67765543211100 0001
Q ss_pred HH-HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 69 DL-IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 69 ~~-i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
++ ...+-+.+-+.+++||+. +|.--+++...++.+.. .++++=-. |+....++.
T Consensus 274 ~~~~~~~~~~ik~~~~~pvi~------~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 333 (370)
T cd02929 274 EGHQEPYIKFVKQVTSKPVVG------VGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIR 333 (370)
T ss_pred ccccHHHHHHHHHHCCCCEEE------eCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHH
Confidence 11 233445566667899876 34445788898888644 44444433 777777765
No 443
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=79.38 E-value=10 Score=28.72 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
.++..||+++++.++... ++.++-.+...+.++..++.+.+.+.|.+|+|+=.|-
T Consensus 101 ~~p~~eR~~~L~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~EGlv~K~~d 158 (174)
T cd07896 101 KGPFEERLERLKNLLEKIPNPHIKIVPQIPVKSNEALDQYLDEVVAAGGEGLMLRRPD 158 (174)
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEeeeeeCCHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 468899999999888764 3444444555677888889999999999999998654
No 444
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=79.35 E-value=15 Score=30.46 Aligned_cols=90 Identities=11% Similarity=0.129 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
+++++.+.+. +-. +......+.+.+....+.|++.++..++-..|.-.+.. .-+.+..+.+.+++.+++||.++-.-
T Consensus 5 k~ll~~A~~~-~yA-V~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~-~~~~~~~~~~~~a~~~~VPValHLDH 81 (282)
T TIGR01858 5 KYMLQDAQAG-GYA-VPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHA-GTEYIVALCSAASTTYNMPLALHLDH 81 (282)
T ss_pred HHHHHHHHHc-CCe-EEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC-CHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3455555443 222 33455567888888899999999998888888765543 36779999999999999999998754
Q ss_pred CCcccccCHHHHHHHHcC
Q psy9711 93 FVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~ 110 (198)
+. +.+.+.+-.+.
T Consensus 82 g~-----~~e~i~~ai~~ 94 (282)
T TIGR01858 82 HE-----SLDDIRQKVHA 94 (282)
T ss_pred CC-----CHHHHHHHHHc
Confidence 32 35556555543
No 445
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=79.32 E-value=32 Score=27.81 Aligned_cols=69 Identities=16% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCEEEEcCCC------CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CC
Q psy9711 40 IDLTQKAAKAGANAALILCPY------YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-EN 112 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~------y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~ 112 (198)
.++...+.++|++++|+=.=. +... +.+++.+|.+.. .+.++-.-+ .| +|..+.+..|..+ |.
T Consensus 134 ~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~--~~~~L~~Fv~~a-r~~gL~~aL------AG-SL~~~di~~L~~l~pD 203 (235)
T PF04476_consen 134 LDLPEIAAEAGFDGVMLDTADKDGGSLFDHL--SEEELAEFVAQA-RAHGLMCAL------AG-SLRFEDIPRLKRLGPD 203 (235)
T ss_pred HHHHHHHHHcCCCEEEEecccCCCCchhhcC--CHHHHHHHHHHH-HHccchhhc------cc-cCChhHHHHHHhcCCC
Confidence 455566666777777764311 1111 244444444333 333433322 12 4556666666653 66
Q ss_pred EEEEee
Q psy9711 113 IRGVKD 118 (198)
Q Consensus 113 i~giK~ 118 (198)
++|+.-
T Consensus 204 ~lGfRG 209 (235)
T PF04476_consen 204 ILGFRG 209 (235)
T ss_pred EEEech
Confidence 666653
No 446
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=79.19 E-value=40 Score=28.96 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=59.4
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCE----EEEcCCCCcCCCCCH------------------HHHHHHHHHH--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGANA----ALILCPYYFQKKMTE------------------DLIYEHFISV-- 78 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~----v~~~~P~y~~~~~~~------------------~~i~~y~~~i-- 78 (198)
|.-||+| ++-.+.+.+++.|+..++++..- ++++--|++||. |. ++=+..-+.+
T Consensus 53 rllvIvGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPR-Ts~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~ 131 (356)
T PRK12822 53 RLLVIIGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPR-TRKGWKGLIFDPDLDGSNDIEKGLRLARQLLL 131 (356)
T ss_pred CeEEEEcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCC-CCCCccccccCCCCCCCccHHHHHHHHHHHHH
Confidence 7788888 67778899999999999987652 344445556653 21 3334455555
Q ss_pred -HccCCCCEEEE-eCCCCc------------cc-ccCHHHHHHHH-cCCCEEEEeeC
Q psy9711 79 -ADNSPIPVIIY-NNTFVT------------NI-DISVDTLVKLA-HHENIRGVKDT 119 (198)
Q Consensus 79 -~~~~~~pi~lY-n~P~~t------------g~-~l~~~~l~~L~-~~p~i~giK~s 119 (198)
....++|+.-= -.|... |- +..-....+++ ...--||+|.+
T Consensus 132 ~~~~~GlPvatE~ld~~~~qy~~Dlisw~aIGARt~esq~hrelaSgls~PVgfKng 188 (356)
T PRK12822 132 SINTLGLATATEFLDTTSFPYIADLICWGAIGARTTESQVHRQLASALPCPVGFKNG 188 (356)
T ss_pred HHHHhCCCEEEeecccccHHHHHHHHHhhhhccchhcCHHHHHHHhCCCCceEecCC
Confidence 55678998731 011110 11 12223456666 58889999999
No 447
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=79.18 E-value=47 Score=29.74 Aligned_cols=87 Identities=16% Similarity=0.043 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEE--------EcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 12 KLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAAL--------ILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 12 r~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~--------~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
..++++.+.+.. ++|||+|-.. | .+.++++.++|||++- .....+..-...+..-.--..+.+...
T Consensus 253 ~~~~i~~i~~~~~~~~vi~g~~~--t---~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 253 MISAIKAVRALDLGVPIVAGNVV--S---AEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred HHHHHHHHHHHCCCCeEEEeccC--C---HHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 345666666655 8999998443 2 3445566688999997 444444332211322222233333344
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
++||+- -.|+.-+-+..+-|+
T Consensus 328 ~~~via-----dGgi~~~~di~kala 348 (475)
T TIGR01303 328 GGHVWA-----DGGVRHPRDVALALA 348 (475)
T ss_pred CCcEEE-----eCCCCCHHHHHHHHH
Confidence 788775 356777777777777
No 448
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=79.16 E-value=10 Score=31.49 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeCCC----CcHHHHHHHHHHHHh
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGTYC----ESTRATIDLTQKAAK 48 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~----~~~~~~i~~a~~a~~ 48 (198)
-.++.+.-.++++..++.. ..-++.|..+ .|.+|-.++.+.+.+
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~ 64 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAID 64 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHH
Confidence 3456666666666666653 3333444322 234555555554443
No 449
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=79.16 E-value=10 Score=31.17 Aligned_cols=78 Identities=8% Similarity=-0.031 Sum_probs=40.5
Q ss_pred cCCCCHHHHHHHHHHHHHhc-CCeEEEeCC----CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQET-KKTIIAGTY----CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~----~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
--.+..+.-++.++..++.. +.-++.|.. ..+.+|-.+..+.+.+.-.+.+.++.-. ...+ .++.++.-+..
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv-~~~~--~~~~~~~a~~a 91 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGT-GSNN--TAEAIELTKRA 91 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEecc-CCcc--HHHHHHHHHHH
Confidence 34577777777777777764 444445554 3445666666666555533323222111 1122 55666655555
Q ss_pred HccCCCC
Q psy9711 79 ADNSPIP 85 (198)
Q Consensus 79 ~~~~~~p 85 (198)
.+ .+..
T Consensus 92 ~~-~G~d 97 (284)
T cd00950 92 EK-AGAD 97 (284)
T ss_pred HH-cCCC
Confidence 43 4544
No 450
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=78.98 E-value=38 Score=28.53 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEEEeCCCCc--------------HHHHHHHHHHHHhcCCCEEEEcCCC---CcC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTIIAGTYCES--------------TRATIDLTQKAAKAGANAALILCPY---YFQ 63 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~--------------~~~~i~~a~~a~~~Gad~v~~~~P~---y~~ 63 (198)
+..|+.+|-.+..+.+++.+ ++.|=+=+|.-. ..+.-+-.+++++.|+|++-+.-.. .++
T Consensus 105 gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk 184 (307)
T PRK05835 105 ASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFK 184 (307)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccC
Q ss_pred --CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEEeeCCHHHHHHHHhhcCCCCeEEEe
Q psy9711 64 --KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDTDNIKLANMANQTKDLNFSVFA 140 (198)
Q Consensus 64 --~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK~sd~~~~~~~~~~~~~~~~~v~~ 140 (198)
.. +.==++-.++|.+++++|+++ ..|..++.+.+..+.+. ..+.+-|-+..+.+++.+ +..=.++.+.+
T Consensus 185 ~~~~--p~L~f~~L~~I~~~~~iPLVL-----HGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai-~~GI~KiNi~T 256 (307)
T PRK05835 185 FKGE--PKLDFERLQEVKRLTNIPLVL-----HGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESV-KGGINKVNTDT 256 (307)
T ss_pred CCCC--CccCHHHHHHHHHHhCCCEEE-----eCCCCCchHHhhhhhhhccccccccCCCHHHHHHHH-HcCceEEEeCh
Q ss_pred cChhhHHHHhh
Q psy9711 141 GSAGYLLSGLL 151 (198)
Q Consensus 141 G~d~~~~~~l~ 151 (198)
-.-..+..++.
T Consensus 257 ~l~~a~~~~~~ 267 (307)
T PRK05835 257 DLRIAFIAEVR 267 (307)
T ss_pred HHHHHHHHHHH
No 451
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=78.78 E-value=30 Score=28.86 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
|.++..+.++.+.++. ..-+|+|..+.+.++..+.++.+.++++|.+-+.+
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~ 214 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHP 214 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 6677888888887764 55678888888999999999999999999988753
No 452
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=78.75 E-value=15 Score=30.50 Aligned_cols=90 Identities=8% Similarity=0.122 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
+++++.+.+. +-.| ......+.+.+....+.|++.+...++-..|.-.+.. .-+.+..+.+..++.+++||.++-.-
T Consensus 7 k~iL~~A~~~-~yaV-~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~-g~~~~~~~~~~~A~~~~VPValHLDH 83 (284)
T PRK12857 7 AELLKKAEKG-GYAV-GAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYA-GIEYISAMVRTAAEKASVPVALHLDH 83 (284)
T ss_pred HHHHHHHHHc-CCeE-EEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhC-CHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4455555443 3332 3344457788888899999999999988888765543 25678888999999999999999764
Q ss_pred CCcccccCHHHHHHHHcC
Q psy9711 93 FVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~ 110 (198)
. . +.+.+.+-.+.
T Consensus 84 ~---~--~~e~i~~ai~~ 96 (284)
T PRK12857 84 G---T--DFEQVMKCIRN 96 (284)
T ss_pred C---C--CHHHHHHHHHc
Confidence 3 2 34555555443
No 453
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=78.70 E-value=30 Score=27.21 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++.+.-.+.++...+..+.++++|+|+--+.+ +++.|.++|+++++. |. .+.++.++.+ ..++|+
T Consensus 43 ~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~---~~~~a~~aGA~fivs--p~------~~~~v~~~~~----~~~~~~ 107 (206)
T PRK09140 43 LNSPDPFDSIAALVKALGDRALIGAGTVLSPE---QVDRLADAGGRLIVT--PN------TDPEVIRRAV----ALGMVV 107 (206)
T ss_pred CCCccHHHHHHHHHHHcCCCcEEeEEecCCHH---HHHHHHHcCCCEEEC--CC------CCHHHHHHHH----HCCCcE
Confidence 34444455566665554556889999877766 456677899998876 33 2555666544 345665
Q ss_pred EEEeCCCCcccccCHHHHHHHHcC-CCEEEE-eeC--CHHHHHHHHhhcCC--CCeEEEecCh-hhHHHHhhcCCCeEEe
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAHH-ENIRGV-KDT--DNIKLANMANQTKD--LNFSVFAGSA-GYLLSGLLVGCAGGIN 159 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi-K~s--d~~~~~~~~~~~~~--~~~~v~~G~d-~~~~~~l~~G~~G~is 159 (198)
+. | ..+++.+.+-.+. -.++++ ... .+..+.++. ...+ -.+-...|-+ +.+...+..|++|+..
T Consensus 108 ~~-------G-~~t~~E~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~-~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav 178 (206)
T PRK09140 108 MP-------G-VATPTEAFAALRAGAQALKLFPASQLGPAGIKALR-AVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGL 178 (206)
T ss_pred Ec-------c-cCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH-hhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEE
Confidence 53 2 3455555544443 245544 112 556666655 3332 2343445655 3577788999998765
Q ss_pred cc
Q psy9711 160 AL 161 (198)
Q Consensus 160 ~~ 161 (198)
+.
T Consensus 179 ~s 180 (206)
T PRK09140 179 GS 180 (206)
T ss_pred eh
Confidence 44
No 454
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=78.62 E-value=29 Score=27.35 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
+.++++.+.+++ +..++...+..+.++..+..+...+.++|++++.++.. .+.. ++. +...++|++.
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~------~~~~---~~~-l~~~~iPvv~ 83 (268)
T cd06273 14 FARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH------SPAL---LDL-LARRGVPYVA 83 (268)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC------CHHH---HHH-HHhCCCCEEE
Confidence 445555555544 67777766667788888888888888999999976531 2222 233 3456899998
Q ss_pred EeC
Q psy9711 89 YNN 91 (198)
Q Consensus 89 Yn~ 91 (198)
.+.
T Consensus 84 ~~~ 86 (268)
T cd06273 84 TWN 86 (268)
T ss_pred EcC
Confidence 875
No 455
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=78.61 E-value=29 Score=30.19 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
.++|++.-+.+.+.+ ++||++ || ...+-++.+.++|+|++.+...---... +.-.-..-..++.++++
T Consensus 238 ~~~tW~~i~~lr~~~----~~pvivKgV------~~~~dA~~a~~~G~d~I~vsnhGGr~~d-~~~~t~~~L~ei~~~~~ 306 (383)
T cd03332 238 PSLTWEDLAFLREWT----DLPIVLKGI------LHPDDARRAVEAGVDGVVVSNHGGRQVD-GSIAALDALPEIVEAVG 306 (383)
T ss_pred CCCCHHHHHHHHHhc----CCCEEEecC------CCHHHHHHHHHCCCCEEEEcCCCCcCCC-CCcCHHHHHHHHHHHhc
Q ss_pred --CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711 84 --IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116 (198)
Q Consensus 84 --~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~gi 116 (198)
+||++ ..|+.=..+.++-|+-=-..+++
T Consensus 307 ~~~~vi~-----dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 307 DRLTVLF-----DSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred CCCeEEE-----eCCcCcHHHHHHHHHcCCCEEEE
No 456
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=78.56 E-value=22 Score=29.06 Aligned_cols=99 Identities=11% Similarity=0.139 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.=..++++.+-+++ +-.+++..+..+.+.- +..+...+.++||+++.++... . ++++.+.+. ++|+
T Consensus 14 pff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~s~~~~-----~----~~l~~~~~~-~iPv 82 (279)
T PF00532_consen 14 PFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKE-EYIELLLQRRVDGIILASSEND-----D----EELRRLIKS-GIPV 82 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHH-HHHHHHHHTTSSEEEEESSSCT-----C----HHHHHHHHT-TSEE
T ss_pred cHHHHHHHHHHHHHHHcCCEEEEecCCCchHHH-HHHHHHHhcCCCEEEEecccCC-----h----HHHHHHHHc-CCCE
Confidence 33455666666666 6666655544455555 8889999999999999844321 2 445555555 8999
Q ss_pred EEEeCCCCcc--cc--------cCHHHHHHHHc--CCC-EEEEeeC
Q psy9711 87 IIYNNTFVTN--ID--------ISVDTLVKLAH--HEN-IRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg--~~--------l~~~~l~~L~~--~p~-i~giK~s 119 (198)
++.|.+.... .+ -.-+....|.+ |.+ |..+-..
T Consensus 83 V~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~ 128 (279)
T PF00532_consen 83 VLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGP 128 (279)
T ss_dssp EEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEES
T ss_pred EEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEecC
Confidence 9999762211 11 12345566663 677 7666555
No 457
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=78.46 E-value=11 Score=31.14 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHh-c-CCeEEEeCC----CCcHHHHHHHHHHHHh
Q psy9711 6 KSTEEEKLKIISTLRQE-T-KKTIIAGTY----CESTRATIDLTQKAAK 48 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~-~-~~pvi~gv~----~~~~~~~i~~a~~a~~ 48 (198)
.+..+..+++++..++. . +.-++.|.. ..+.+|-.+.++.+.+
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~ 65 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAE 65 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 45666666666666666 3 443444442 2234444555554443
No 458
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=78.44 E-value=33 Score=27.56 Aligned_cols=101 Identities=12% Similarity=-0.034 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCC--CEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711 38 ATIDLTQKAAKAGA--NAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 115 (198)
Q Consensus 38 ~~i~~a~~a~~~Ga--d~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g 115 (198)
...+..+..++.|+ .+-+++.|.- | -+.+ +.+.+.++.=+++=-+|+..|..+-++.+.++.
T Consensus 104 ~~~~~l~~Ik~~g~~~kaGlalnP~T--p---~~~i----~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~------- 167 (228)
T PRK08091 104 DLALTIEWLAKQKTTVLIGLCLCPET--P---ISLL----EPYLDQIDLIQILTLDPRTGTKAPSDLILDRVI------- 167 (228)
T ss_pred cHHHHHHHHHHCCCCceEEEEECCCC--C---HHHH----HHHHhhcCEEEEEEECCCCCCccccHHHHHHHH-------
Confidence 34455555566676 6666666641 1 2222 233344555455555677777777777777663
Q ss_pred EeeCCHHHHHHHHhhcCCCCeEE--EecCh-hhHHHHhhcCCCeEEeccc
Q psy9711 116 VKDTDNIKLANMANQTKDLNFSV--FAGSA-GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 116 iK~sd~~~~~~~~~~~~~~~~~v--~~G~d-~~~~~~l~~G~~G~is~~~ 162 (198)
++++++. ..+.++.+ =.|-. +.+.....+|+|.+++|.+
T Consensus 168 -------~lr~~~~-~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 168 -------QVENRLG-NRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred -------HHHHHHH-hcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChh
Confidence 3344442 22334333 23333 3556777899999999976
No 459
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=78.37 E-value=27 Score=27.62 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..+++..+..+.+...+..+.+...++|++++.++. .+ .. .++.+. ..++|+++
T Consensus 14 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~---~~--~~----~~~~~~-~~~ipvV~ 83 (268)
T cd06270 14 FGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKA---LS--DD----ELIELA-AQVPPLVL 83 (268)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCC---CC--HH----HHHHHh-hCCCCEEE
Confidence 344555555544 6666666666667777888888888899999998652 22 21 144443 45899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 84 ~~~~ 87 (268)
T cd06270 84 INRH 87 (268)
T ss_pred Eecc
Confidence 9864
No 460
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=78.36 E-value=30 Score=30.92 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEeCCCC-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQETKKTIIAGTYCE-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
|..|++-+-.+..-..++..+.-+.+.++.. +.+-.+++++.+.++|+|.+.+.-..-... ++++.+.++.+
T Consensus 125 fd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~---P~~v~~Lv~al 201 (468)
T PRK12581 125 FDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILT---PKAAKELVSGI 201 (468)
T ss_pred cccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC---HHHHHHHHHHH
Q ss_pred HccCCCCEEEE
Q psy9711 79 ADNSPIPVIIY 89 (198)
Q Consensus 79 ~~~~~~pi~lY 89 (198)
-+..++||-+|
T Consensus 202 k~~~~~pi~~H 212 (468)
T PRK12581 202 KAMTNLPLIVH 212 (468)
T ss_pred HhccCCeEEEE
No 461
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=78.35 E-value=8 Score=33.14 Aligned_cols=70 Identities=11% Similarity=0.170 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcH----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 14 KIISTLRQETKKTIIAGTYCEST----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
++++.+.+. ++|+=+||.+-|+ +.+++.++.+++.|.+-+.++. +.| +....++-|+.
T Consensus 122 ~vv~~ake~-~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSl----KsS-dv~~~i~ayr~ 195 (359)
T PF04551_consen 122 EVVEAAKER-GIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISL----KSS-DVPETIEAYRL 195 (359)
T ss_dssp HHHHHHHHH-T-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEE----EBS-SHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEE----EeC-ChHHHHHHHHH
Confidence 344444444 9999999987775 3457888999999999999873 333 47788999999
Q ss_pred HHccCCCCEEEE
Q psy9711 78 VADNSPIPVIIY 89 (198)
Q Consensus 78 i~~~~~~pi~lY 89 (198)
+++.++.|+-+=
T Consensus 196 la~~~dyPLHLG 207 (359)
T PF04551_consen 196 LAERMDYPLHLG 207 (359)
T ss_dssp HHHH--S-EEEE
T ss_pred HHHhcCCCeEEe
Confidence 999999997663
No 462
>PRK09701 D-allose transporter subunit; Provisional
Probab=78.26 E-value=37 Score=27.94 Aligned_cols=78 Identities=4% Similarity=-0.052 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
++..-..++++.+.+++ +.-++. +.+..+.....+..+.+...|+|++++.+.. .+........+. .
T Consensus 34 ~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~-------~~~~~~~l~~~~-~ 105 (311)
T PRK09701 34 LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLS-------SVNLVMPVARAW-K 105 (311)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hHHHHHHHHHHH-H
Confidence 34444555666665555 555543 2445567788888888888999999998643 122222334443 4
Q ss_pred CCCCEEEEeCC
Q psy9711 82 SPIPVIIYNNT 92 (198)
Q Consensus 82 ~~~pi~lYn~P 92 (198)
.++|++.+|.+
T Consensus 106 ~giPvV~~~~~ 116 (311)
T PRK09701 106 KGIYLVNLDEK 116 (311)
T ss_pred CCCcEEEeCCC
Confidence 68999999964
No 463
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=78.11 E-value=34 Score=27.56 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhc-CCeEEEe---CCCC--cHHHHHHHHHHHHhcC--CCEEEEcCCCCc-CCCCCHHHHHHHHHHHHccC
Q psy9711 12 KLKIISTLRQET-KKTIIAG---TYCE--STRATIDLTQKAAKAG--ANAALILCPYYF-QKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 12 r~~l~~~~~~~~-~~pvi~g---v~~~--~~~~~i~~a~~a~~~G--ad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~~~ 82 (198)
-....+.+.++. .++++.+ +-.. .....+++++...+.| +|++=+..-.+. .++ .+++.+..+.+++ .
T Consensus 105 i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~--~~~~~~~l~~~~~-~ 181 (254)
T smart00633 105 IEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPN--IAEIRAALDRFAS-L 181 (254)
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCC--HHHHHHHHHHHHH-c
Confidence 334555555555 8888886 3322 1234588888888876 477777643322 244 7889999999975 5
Q ss_pred CCCEEEE
Q psy9711 83 PIPVIIY 89 (198)
Q Consensus 83 ~~pi~lY 89 (198)
++||.+=
T Consensus 182 g~pi~iT 188 (254)
T smart00633 182 GLEIQIT 188 (254)
T ss_pred CCceEEE
Confidence 9999985
No 464
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.07 E-value=16 Score=30.30 Aligned_cols=89 Identities=9% Similarity=0.118 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
++++.+.+. +-.| ......+.+.+....+.|++.+...++-..|.-.... .-+.+..+.+.+++.+++||.++-.-.
T Consensus 3 ~lL~~A~~~-~yaV-~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~-~~~~~~~~~~~~a~~~~VPV~lHLDH~ 79 (276)
T cd00947 3 ELLKKAREG-GYAV-GAFNINNLETLKAILEAAEETRSPVILQISEGAIKYA-GLELLVAMVKAAAERASVPVALHLDHG 79 (276)
T ss_pred HHHHHHHHC-CceE-EEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhC-CHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 445554443 3323 3344457788888889999999998888888755433 367899999999999999999997543
Q ss_pred CcccccCHHHHHHHHcC
Q psy9711 94 VTNIDISVDTLVKLAHH 110 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~ 110 (198)
. +.+.+.+-.+.
T Consensus 80 ~-----~~~~i~~ai~~ 91 (276)
T cd00947 80 S-----SFELIKRAIRA 91 (276)
T ss_pred C-----CHHHHHHHHHh
Confidence 2 35555555443
No 465
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.03 E-value=12 Score=29.84 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhc-CCeEEEeCC------------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 11 EKLKIISTLRQET-KKTIIAGTY------------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 11 Er~~l~~~~~~~~-~~pvi~gv~------------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
+..++++.+++.. +-.+++++. ...-.+.+++++.+.+.|++.+.+..-.-.... ..-=.+..++
T Consensus 110 ~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~--~g~~~~~i~~ 187 (241)
T PRK13585 110 ENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL--EGVNTEPVKE 187 (241)
T ss_pred hChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc--CCCCHHHHHH
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+++.+++|++. .|---+++.+.++.+
T Consensus 188 i~~~~~iPvia------~GGI~~~~di~~~~~ 213 (241)
T PRK13585 188 LVDSVDIPVIA------SGGVTTLDDLRALKE 213 (241)
T ss_pred HHHhCCCCEEE------eCCCCCHHHHHHHHH
No 466
>PRK14057 epimerase; Provisional
Probab=77.91 E-value=37 Score=27.80 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=42.4
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeCCHHHHHHHHhhcCCCCeEE--EecCh-hhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDNIKLANMANQTKDLNFSV--FAGSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~sd~~~~~~~~~~~~~~~~~v--~~G~d-~~~~~~l~~G~~G 156 (198)
+.++.=+++=-+|+..|..+-++.+.++. ++++++. ..+.++.+ =.|-. +.+.....+|++.
T Consensus 153 ~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~--------------~lr~~~~-~~~~~~~IeVDGGI~~~ti~~l~~aGad~ 217 (254)
T PRK14057 153 SDVEVIQLLAVNPGYGSKMRSSDLHERVA--------------QLLCLLG-DKREGKIIVIDGSLTQDQLPSLIAQGIDR 217 (254)
T ss_pred HhCCEEEEEEECCCCCchhccHHHHHHHH--------------HHHHHHH-hcCCCceEEEECCCCHHHHHHHHHCCCCE
Confidence 34555555556787788888888777763 3344442 22334333 23333 3556778899999
Q ss_pred EEecccc
Q psy9711 157 GINALSA 163 (198)
Q Consensus 157 ~is~~~n 163 (198)
+++|.+-
T Consensus 218 ~V~GSal 224 (254)
T PRK14057 218 VVSGSAL 224 (254)
T ss_pred EEEChHh
Confidence 9999653
No 467
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=77.91 E-value=16 Score=28.85 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=5.9
Q ss_pred cCHHHHHHHHc
Q psy9711 99 ISVDTLVKLAH 109 (198)
Q Consensus 99 l~~~~l~~L~~ 109 (198)
.+.+++.++.+
T Consensus 176 ~~~~~i~~i~~ 186 (230)
T TIGR00007 176 PNFELTKELVK 186 (230)
T ss_pred CCHHHHHHHHH
Confidence 34555566553
No 468
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=77.90 E-value=24 Score=31.35 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+.+-.+++++.+.++|+|.+.+.-.. ... +|.++.+.++.+-+..++||-+|-
T Consensus 152 ~~~~~~~~a~~l~~~Gad~I~i~Dt~-G~l--~P~~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 152 TIDYFVKLAKEMQEMGADSICIKDMA-GIL--TPYVAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC-CCC--CHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45777899999999999987776444 333 389999999999888888888763
No 469
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.87 E-value=27 Score=27.70 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=41.9
Q ss_pred CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 25 KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 25 ~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
..++..-+..+.++..+..+.+.+.++|++++.|.- .+.+...++.+. ..++|++..|.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~-------~~~~~~~i~~~~-~~gIpvV~~d~~ 94 (274)
T cd06311 35 VEFILVTASNDTEQQNAQQDLLINRKIDALVILPFE-------SAPLTQPVAKAK-KAGIFVVVVDRG 94 (274)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------chhhHHHHHHHH-HCCCeEEEEcCC
Confidence 566666665567777788888888999999997542 223334455543 468999999864
No 470
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.84 E-value=33 Score=27.15 Aligned_cols=75 Identities=7% Similarity=-0.062 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhc-----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 10 EEKLKIISTLRQET-----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
.=+.++++.+.+++ +.-++...+..+.+...+..+.+.+.++|++++.+.. .+......+.+. ..++
T Consensus 12 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~-------~~~~~~~i~~~~-~~~i 83 (271)
T cd06321 12 PFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVD-------SKGIAPAVKRAQ-AAGI 83 (271)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-------hhHhHHHHHHHH-HCCC
Confidence 34455555555555 3445555555566666778888888999999886432 222223344443 4589
Q ss_pred CEEEEeCC
Q psy9711 85 PVIIYNNT 92 (198)
Q Consensus 85 pi~lYn~P 92 (198)
|++..|.+
T Consensus 84 pvv~~~~~ 91 (271)
T cd06321 84 VVVAVDVA 91 (271)
T ss_pred eEEEecCC
Confidence 99999874
No 471
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=77.82 E-value=37 Score=27.74 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=42.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
+..++..-+..+.+...+..+.+.+.++|++++.|.. .+.+.+.++.+ ...++||++.|.+
T Consensus 31 g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~-------~~~~~~~~~~~-~~~giPvV~~~~~ 91 (303)
T cd01539 31 KVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVD-------PTAAQTVINKA-KQKNIPVIFFNRE 91 (303)
T ss_pred CeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCc-------hhhHHHHHHHH-HHCCCCEEEeCCC
Confidence 4556665566677777888888899999999987532 22233455554 4578999999863
No 472
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=77.81 E-value=12 Score=31.02 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy9711 6 KSTEEEKLKIISTLRQE 22 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~ 22 (198)
++..+.-+++++..++.
T Consensus 17 ~iD~~~~~~~i~~~i~~ 33 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDK 33 (290)
T ss_pred CcCHHHHHHHHHHHHhC
Confidence 34455555555555443
No 473
>PRK06267 hypothetical protein; Provisional
Probab=77.62 E-value=28 Score=29.67 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhc-C--CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711 7 STEEEKLKIISTLRQET-K--KTIIAGTYCESTRATIDLTQKAAKAGANAALI 56 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~--~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~ 56 (198)
-|.+++.+.++.+.+.. + .-+++|.+ .+.++..+.++.+.+++++.+.+
T Consensus 150 ~s~ed~~~~l~~ak~aGi~v~~g~IiGlg-Et~ed~~~~l~~l~~l~~d~v~~ 201 (350)
T PRK06267 150 KPLDKIKEMLLKAKDLGLKTGITIILGLG-ETEDDIEKLLNLIEELDLDRITF 201 (350)
T ss_pred CCHHHHHHHHHHHHHcCCeeeeeEEEeCC-CCHHHHHHHHHHHHHcCCCEEEE
Confidence 57889999999888775 3 45788875 47889999999999999987643
No 474
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=77.58 E-value=43 Score=28.43 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=84.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCC--CEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGA--NAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Ga--d~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
.++.+++....+ +.....++++++-....+..+.+....++|+ |.+.+-.-. +. .+.+.+..+.|-+..+
T Consensus 68 k~~~e~~~~~~r---~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~---gh--~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 68 RFDPEARIPFIK---DMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH---GH--SDSVINMIQHIKKHLP 139 (326)
T ss_pred cCCHHHHHHHHH---hccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC---Cc--hHHHHHHHHHHHhhCC
Confidence 357788777773 2222233666665556778889999999955 988885444 22 5556666777777775
Q ss_pred -CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------------CHH--HHHHHHhhcCCCCeEEE-ec
Q psy9711 84 -IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------------DNI--KLANMANQTKDLNFSVF-AG 141 (198)
Q Consensus 84 -~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------------d~~--~~~~~~~~~~~~~~~v~-~G 141 (198)
.||+.=|. -+.+...+|.+. .+.++|.+ |+. .+.++.+ .. +..|+ .|
T Consensus 140 ~~~vi~g~V-------~t~e~a~~l~~a-Gad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~-~~--~ipVIAdG 208 (326)
T PRK05458 140 ETFVIAGNV-------GTPEAVRELENA-GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAK-AA--RKPIIADG 208 (326)
T ss_pred CCeEEEEec-------CCHHHHHHHHHc-CcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHH-Hc--CCCEEEeC
Confidence 88887664 277888888753 23334422 111 2333332 22 23343 33
Q ss_pred C---hhhHHHHhhcCCCeEEecccc
Q psy9711 142 S---AGYLLSGLLVGCAGGINALSA 163 (198)
Q Consensus 142 ~---d~~~~~~l~~G~~G~is~~~n 163 (198)
. ......++.+|+++++.|...
T Consensus 209 GI~~~~Di~KaLa~GA~aV~vG~~~ 233 (326)
T PRK05458 209 GIRTHGDIAKSIRFGATMVMIGSLF 233 (326)
T ss_pred CCCCHHHHHHHHHhCCCEEEechhh
Confidence 2 235678899999999888653
No 475
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=77.53 E-value=6.8 Score=30.17 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 5 FKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
..++.+||+++++.++... ++.++-..-..+.++.-++.+.+.+.|-.|+|+=.
T Consensus 129 ~~~p~~eR~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EG~v~K~ 184 (202)
T PF01068_consen 129 LDLPYEERRELLEELLEPPPPRIRIVESYVVNSKEELEELFEEAIDQGFEGLVLKD 184 (202)
T ss_dssp TTSCHHHHHHHHHHHBG-BTSSEEEEEEEEESSHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred eeccHHHHHHHHHHhhccCCCceeEeeeecCCCHHHHHHHHHHHHHcCCceEEEEC
Confidence 4579999999999999544 55555555556788999999999999999999954
No 476
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.49 E-value=36 Score=29.81 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=50.4
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCc-------CCCCCHHHHHHHHHHHHccCCC
Q psy9711 14 KIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYF-------QKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~-------~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
++++.+.+.. +++||+|-.. +.+.++++.++|||++.+. .|.-. .-...+-..+....++++..++
T Consensus 183 ~~v~~ik~~~p~~~vi~g~V~-----T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~v 257 (404)
T PRK06843 183 ELVKKIKTKYPNLDLIAGNIV-----TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNI 257 (404)
T ss_pred HHHHHHHhhCCCCcEEEEecC-----CHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCC
Confidence 4555555544 5667665433 2456677778899999875 24221 0000144455555777777889
Q ss_pred CEEEEeCCCCcccccCHHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
||+. -.|+.-+.+..+-|+
T Consensus 258 pVIA-----dGGI~~~~Di~KALa 276 (404)
T PRK06843 258 CIIA-----DGGIRFSGDVVKAIA 276 (404)
T ss_pred eEEE-----eCCCCCHHHHHHHHH
Confidence 9875 356666666666666
No 477
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=77.45 E-value=11 Score=32.70 Aligned_cols=77 Identities=14% Similarity=0.047 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..-.+||...+.-+++.+ ++--.+++++. .+|.++.++.++++|++.+|+--=.+ -=...+|+++-
T Consensus 199 f~~~e~R~~~~m~~i~~aeaeTGekk~y~~NITa~-~~EM~rrae~a~elG~~~~midi~~~------G~~a~q~lre~- 270 (429)
T COG1850 199 FNRFEERVAKIMEAIDKAEAETGEKKMYAVNITAP-CEEMMRRAELAAELGANYVMIDIVVT------GFTALQYLRED- 270 (429)
T ss_pred cccHHHHHHHHHHHHHHHHHhhCceEEEEeeccCC-HHHHHHHHHHHHHcCCCEEEEEEEec------ccHHHHHHHhc-
Confidence 345678877666666555 34456789987 99999999999999999999862211 12345777777
Q ss_pred ccCCCCEEEEe
Q psy9711 80 DNSPIPVIIYN 90 (198)
Q Consensus 80 ~~~~~pi~lYn 90 (198)
+..+++|..+-
T Consensus 271 ~d~gl~ihaHr 281 (429)
T COG1850 271 EDIGLAIHAHR 281 (429)
T ss_pred ccCCceEEech
Confidence 66777777664
No 478
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=77.43 E-value=32 Score=26.87 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
.++++.+.+. ...+|+-+++ ++-++.|.++|+|.+--.---|-..+..+.-=++..+++++. +.||+.
T Consensus 82 ~~li~~i~~~-~~l~MADist------~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIa---- 149 (192)
T PF04131_consen 82 EELIREIKEK-YQLVMADIST------LEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIA---- 149 (192)
T ss_dssp HHHHHHHHHC-TSEEEEE-SS------HHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEE----
T ss_pred HHHHHHHHHh-CcEEeeecCC------HHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCcEee----
Confidence 4455555554 4778887774 566778999999998887666654432222335667778765 888765
Q ss_pred CCcccccCHHHHHHHHcC---CCEEEEeeCCHHH
Q psy9711 93 FVTNIDISVDTLVKLAHH---ENIRGVKDTDNIK 123 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~---p~i~giK~sd~~~ 123 (198)
-|.--+|+...+..+. --|||-.-+.+..
T Consensus 150 --EGri~tpe~a~~al~~GA~aVVVGsAITrP~~ 181 (192)
T PF04131_consen 150 --EGRIHTPEQAAKALELGAHAVVVGSAITRPQE 181 (192)
T ss_dssp --ESS--SHHHHHHHHHTT-SEEEE-HHHH-HHH
T ss_pred --cCCCCCHHHHHHHHhcCCeEEEECcccCCHHH
Confidence 4556688888887753 4566655554433
No 479
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=77.40 E-value=30 Score=27.21 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
-..++++-+.+++ +..++.-....+.....+..+...+.++|++++.++. . .+ ..++.+. ..++|++
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~---~~---~~~~~l~-~~~ipvV 82 (265)
T cd06299 13 YFASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHE---Q---SA---EQLEDLL-KRGIPVV 82 (265)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCC---C---Ch---HHHHHHH-hCCCCEE
Confidence 3445555555544 6666554444456666778888889999999998652 1 22 2355554 3589999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.|.+
T Consensus 83 ~~~~~ 87 (265)
T cd06299 83 FVDRE 87 (265)
T ss_pred EEecc
Confidence 99864
No 480
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=77.39 E-value=32 Score=26.87 Aligned_cols=74 Identities=24% Similarity=0.306 Sum_probs=51.1
Q ss_pred CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711 24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 94 (198)
Q Consensus 24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~ 94 (198)
+++||+-+-..|. .+..++++.+++.||+++.+.. +.++..+ . +..+.|.+.+++||++-+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~--~----~~~~~i~~~v~iPi~~~~---- 79 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGS--L----EDLRAVREAVSLPVLRKD---- 79 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCC--H----HHHHHHHHhcCCCEEECC----
Confidence 5788887655444 4489999999999999998873 4444433 3 455666666789999743
Q ss_pred cccccCHHHHHHHHc
Q psy9711 95 TNIDISVDTLVKLAH 109 (198)
Q Consensus 95 tg~~l~~~~l~~L~~ 109 (198)
.-.+++.+..+.+
T Consensus 80 --~i~~~~~v~~~~~ 92 (217)
T cd00331 80 --FIIDPYQIYEARA 92 (217)
T ss_pred --eecCHHHHHHHHH
Confidence 3455656666664
No 481
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=77.27 E-value=13 Score=30.38 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=27.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCC----CcHHHHHHHHHHHHhc
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-KKTIIAGTYC----ESTRATIDLTQKAAKA 49 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~----~~~~~~i~~a~~a~~~ 49 (198)
|-..+..+.-+++++..++.. +.-++.|..+ .+.+|-.+.++.+.+.
T Consensus 11 ~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~ 62 (281)
T cd00408 11 ADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA 62 (281)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH
Confidence 344566777777777777764 4445555533 2345556666655544
No 482
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=77.18 E-value=12 Score=30.71 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHHHhcCCCEEEE
Q psy9711 35 STRATIDLTQKAAKAGANAALI 56 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~ 56 (198)
+.+...+++++..+.|++++++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~ 38 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVV 38 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE
Confidence 3344444444444444444444
No 483
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=77.12 E-value=14 Score=29.88 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
.++++.+.+..++||++.-+-.+.++..+..+. .|++++++..=.|... .+.+++.++.++
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~---~G~~gvivg~al~~~~-~~~~~~~~~~~~ 246 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTE---GGADAALAASIFHFGE-ITIGELKAYLAE 246 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHh---CCccEEeEhHHHHcCC-CCHHHHHHHHHH
Confidence 356666666558999998777777877764333 7999999987776542 347887777653
No 484
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=76.99 E-value=15 Score=28.35 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH-----HHHHHHHHccCC-CCEEEEeCCCCccc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI-----YEHFISVADNSP-IPVIIYNNTFVTNI 97 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i-----~~y~~~i~~~~~-~pi~lYn~P~~tg~ 97 (198)
+..+++|++.. +.+.++.+.+.|+|.+.+. |.+...+ ..+. .+.++.+.+..+ +||+. ..|.
T Consensus 102 ~~~~~~g~~~~----t~~e~~~a~~~gaD~v~~~-~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~v~a-----~GGI 169 (212)
T PRK00043 102 GPDAIIGLSTH----TLEEAAAALAAGADYVGVG-PIFPTPT--KKDAKAPQGLEGLREIRAAVGDIPIVA-----IGGI 169 (212)
T ss_pred CCCCEEEEeCC----CHHHHHHHhHcCCCEEEEC-CccCCCC--CCCCCCCCCHHHHHHHHHhcCCCCEEE-----ECCc
Q ss_pred ccCHHHHHHHHcCC-CEEEE
Q psy9711 98 DISVDTLVKLAHHE-NIRGV 116 (198)
Q Consensus 98 ~l~~~~l~~L~~~p-~i~gi 116 (198)
+++.+.++.+.. ..+++
T Consensus 170 --~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 170 --TPENAPEVLEAGADGVAV 187 (212)
T ss_pred --CHHHHHHHHHcCCCEEEE
No 485
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.87 E-value=31 Score=27.15 Aligned_cols=69 Identities=3% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
++++-+.+++ +.-++...+..+.....+..+.+...++|++++.++. .+ .+ ..+.+ ...++|+++.|
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~---~~--~~----~~~~~-~~~~iPvv~~~ 85 (265)
T cd06285 16 TMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDAR---SD--DH----FLDEL-TRRGVPFVLVL 85 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC---CC--hH----HHHHH-HHcCCCEEEEc
Confidence 3444444444 5566666666677777888888899999999998643 11 22 24444 34589999988
Q ss_pred CC
Q psy9711 91 NT 92 (198)
Q Consensus 91 ~P 92 (198)
.+
T Consensus 86 ~~ 87 (265)
T cd06285 86 RH 87 (265)
T ss_pred cC
Confidence 64
No 486
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=76.82 E-value=7.7 Score=31.95 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy9711 6 KSTEEEKLKIISTLRQE 22 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~ 22 (198)
++..+.-+++++..++.
T Consensus 18 ~id~~~~~~~i~~l~~~ 34 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEA 34 (289)
T ss_dssp SB-HHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHc
Confidence 34444555555555544
No 487
>PLN02535 glycolate oxidase
Probab=76.74 E-value=41 Score=29.02 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
.+|.+. ++.+++..++||++ ||. +.++ ++.+.++|+|++.+...
T Consensus 209 ~~tW~~----i~~lr~~~~~PvivKgV~--~~~d----A~~a~~~GvD~I~vsn~ 253 (364)
T PLN02535 209 SLSWKD----IEWLRSITNLPILIKGVL--TRED----AIKAVEVGVAGIIVSNH 253 (364)
T ss_pred CCCHHH----HHHHHhccCCCEEEecCC--CHHH----HHHHHhcCCCEEEEeCC
Confidence 455544 33333334899988 563 3443 77888999999999753
No 488
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=76.58 E-value=14 Score=29.69 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCCC--C-HHHHHHHHHHHHccCCCCEEEEeCCCCccc-ccCHHHHHHHHcCC--
Q psy9711 38 ATIDLTQKAAKAGANAALILCPYYFQKKM--T-EDLIYEHFISVADNSPIPVIIYNNTFVTNI-DISVDTLVKLAHHE-- 111 (198)
Q Consensus 38 ~~i~~a~~a~~~Gad~v~~~~P~y~~~~~--~-~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~-~l~~~~l~~L~~~p-- 111 (198)
-+.+-++.|.+.|+|.++.--|.++++-. + ..-..+..+.+.+ -++.++-+|.|.-... .++ +.+.+.....
T Consensus 41 ~t~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~-~~I~vy~~Ht~lD~~~~G~n-~~La~~Lgl~~~ 118 (241)
T PF01784_consen 41 ATPEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIK-NGISVYSAHTNLDAAPGGVN-DYLAKKLGLENI 118 (241)
T ss_dssp -SHHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHH-TT-EEEEESHHHHHSTTSHH-HHHHHHHTEEEE
T ss_pred CCHHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHH-CCCEEEEecccccccCcCHH-HHHHHHhCCCCc
Confidence 34455566677999999999998887531 1 1113334444443 5788887775432111 122 3444444211
Q ss_pred ---------------CEEEEeeC-CHHHHHHHHhhcC-C-------------CCeEEEecChhh-HHHHhhcCCCeEEec
Q psy9711 112 ---------------NIRGVKDT-DNIKLANMANQTK-D-------------LNFSVFAGSAGY-LLSGLLVGCAGGINA 160 (198)
Q Consensus 112 ---------------~i~giK~s-d~~~~~~~~~~~~-~-------------~~~~v~~G~d~~-~~~~l~~G~~G~is~ 160 (198)
.+.-++.. +...+.+.+++.. . .++.|.+|.... +-.+...|+|-+|+|
T Consensus 119 ~~~~~~~~~~~~g~g~i~~l~~~~s~~el~~~vk~~l~~~~vr~~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITG 198 (241)
T PF01784_consen 119 KPLDPSKSGEGYGLGRIGELPEPMSLEELAERVKEKLGLPGVRVVGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITG 198 (241)
T ss_dssp EEEEEEEEEEEEECEEEEEEEEEEEHHHHHHHHHHHTTSS-EEEESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEES
T ss_pred cccccccccccceeeeEeecCCCCCHHHHHHHHHHHcCCCcEEecCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEc
Confidence 12334443 4444433332211 1 245666777664 446677899999988
Q ss_pred cc
Q psy9711 161 LS 162 (198)
Q Consensus 161 ~~ 162 (198)
=.
T Consensus 199 d~ 200 (241)
T PF01784_consen 199 DI 200 (241)
T ss_dssp S-
T ss_pred cC
Confidence 64
No 489
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=76.56 E-value=46 Score=28.25 Aligned_cols=145 Identities=12% Similarity=0.054 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCCEEEEcCCCCcCCCCCHH-HHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH----c-CCCEE
Q psy9711 41 DLTQKAAKAGANAALILCPYYFQKKMTED-LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA----H-HENIR 114 (198)
Q Consensus 41 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~~-~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~-~p~i~ 114 (198)
+..+.|.+.|+|.+-+.... + +. ...++.+. +...++.+..+-.- + ...+++.+.+++ + -+..+
T Consensus 91 ~dl~~a~~~gvd~iri~~~~----~--e~d~~~~~i~~-ak~~G~~v~~~l~~--s-~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHC----T--EADVSEQHIGM-ARELGMDTVGFLMM--S-HMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred HHHHHHHHCCCCEEEEEecc----c--hHHHHHHHHHH-HHHcCCeEEEEEEc--c-cCCCHHHHHHHHHHHHhcCCCEE
Confidence 44677888899988876532 2 33 34444443 34456665543321 1 245777776655 2 36899
Q ss_pred EEeeC----CHHHHHHHHh---hcCCCCeEE-EecChh------hHHHHhhcCC---CeEEeccc----ccchHHHHHHH
Q psy9711 115 GVKDT----DNIKLANMAN---QTKDLNFSV-FAGSAG------YLLSGLLVGC---AGGINALS----AVLGGPICELY 173 (198)
Q Consensus 115 giK~s----d~~~~~~~~~---~~~~~~~~v-~~G~d~------~~~~~l~~G~---~G~is~~~----n~~P~~~~~l~ 173 (198)
.++|| .+..+.++++ +..+++..+ |-+.+. ..+.++..|+ |+.+.|++ |.--|.++.+.
T Consensus 161 ~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l 240 (333)
T TIGR03217 161 YIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVL 240 (333)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHH
Confidence 99999 5666554442 233444443 444443 2345677885 45554444 66667777666
Q ss_pred HHH--HcC-CHHHHHHHH-HHhhchh
Q psy9711 174 DLA--KAG-KWEEAMKLQ-HRLVKPD 195 (198)
Q Consensus 174 ~~~--~~g-d~~~A~~l~-~~~~~l~ 195 (198)
+.. ..| |.+...++. .-+.|++
T Consensus 241 ~~~g~~tgidl~~l~~~a~~~v~p~~ 266 (333)
T TIGR03217 241 DRLGWNTGCDLFKLMDAAEDIVRPLM 266 (333)
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHhhc
Confidence 543 222 566665553 3344443
No 490
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=76.54 E-value=41 Score=27.62 Aligned_cols=149 Identities=15% Similarity=0.071 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH----cC-CCEE
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HH-ENIR 114 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~~-p~i~ 114 (198)
.+..+.+.+.|++.+-+..|... -+.+.+..+.. ...++-+..+ .-...+...+++.+.+++ +. +..+
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~-----~~~~~~~i~~a-k~~G~~v~~~-i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALND-----VRNLEVAIKAV-KKAGKHVEGA-ICYTGSPVHTLEYYVKLAKELEDMGADSI 166 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCCh-----HHHHHHHHHHH-HHCCCeEEEE-EEecCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 33445667778888877654321 23333333333 3335544432 110011235666665553 44 6899
Q ss_pred EEeeC----CHHHHHHHHh---hcCCCCeEEEecChh------hHHHHhhcCCC---eEEeccc----ccchHHHHHHHH
Q psy9711 115 GVKDT----DNIKLANMAN---QTKDLNFSVFAGSAG------YLLSGLLVGCA---GGINALS----AVLGGPICELYD 174 (198)
Q Consensus 115 giK~s----d~~~~~~~~~---~~~~~~~~v~~G~d~------~~~~~l~~G~~---G~is~~~----n~~P~~~~~l~~ 174 (198)
.++|+ .+.++.++++ +..+..+.+ -+++. ..+.++..|++ +.+.|++ |..-+.++...+
T Consensus 167 ~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~-H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~ 245 (275)
T cd07937 167 CIKDMAGLLTPYAAYELVKALKKEVGLPIHL-HTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALR 245 (275)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHhCCCeEEE-EecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHH
Confidence 99999 6766665553 222333443 23322 23456778864 4444433 555555554444
Q ss_pred HH--HcC-CHHHHHHHHHHhhchhh
Q psy9711 175 LA--KAG-KWEEAMKLQHRLVKPDV 196 (198)
Q Consensus 175 ~~--~~g-d~~~A~~l~~~~~~l~~ 196 (198)
.. ..| |.+...++.+.+.++++
T Consensus 246 ~~g~~~~~dl~~l~~~~~~v~~~~~ 270 (275)
T cd07937 246 GTGRDTGLDLEKLEEISEYFEEVRK 270 (275)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 32 112 45666666666655543
No 491
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=76.45 E-value=8.9 Score=29.00 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=37.8
Q ss_pred eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711 26 TIIAGTYCESTRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 103 (198)
Q Consensus 26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~ 103 (198)
..++|++..+. +.++.+.+.|+|.+.+.+ |...+++.....-.+.++.+.+..++||+.- .| ++.+.
T Consensus 95 ~~~~g~~~~t~----~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~-----GG--i~~~~ 163 (196)
T cd00564 95 DLIIGVSTHSL----EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAI-----GG--ITPEN 163 (196)
T ss_pred CCEEEeeCCCH----HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE-----CC--CCHHH
Confidence 34444444333 345566677888887753 2111111001122455666666566777662 33 34667
Q ss_pred HHHHHcC
Q psy9711 104 LVKLAHH 110 (198)
Q Consensus 104 l~~L~~~ 110 (198)
+.++.+.
T Consensus 164 i~~~~~~ 170 (196)
T cd00564 164 AAEVLAA 170 (196)
T ss_pred HHHHHHc
Confidence 7777653
No 492
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=76.38 E-value=51 Score=28.58 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+.+.. ++.+++=+ +.-+.+++++.++..++.+.. .+--|.- +++ .+-|+.|.+++++||
T Consensus 189 ~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~--~iEeP~~------~~d-~~~~~~L~~~~~iPI 259 (385)
T cd03326 189 DEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLR--WYEEPGD------PLD-YALQAELADHYDGPI 259 (385)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCCC--EEECCCC------ccC-HHHHHHHHhhCCCCE
Confidence 33455556666555 55666644 335667777777776665432 2333431 111 344666777778887
Q ss_pred EEEeCCCCcccccCHHHHHHHHcCC------CEEEEeeC
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAHHE------NIRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~~p------~i~giK~s 119 (198)
..=.. ..+...+.+|.+.. .++-+|-+
T Consensus 260 a~gEs------~~~~~~~~~li~~~a~~~~~div~~d~~ 292 (385)
T cd03326 260 ATGEN------LFSLQDARNLLRYGGMRPDRDVLQFDPG 292 (385)
T ss_pred EcCCC------cCCHHHHHHHHHhCCccccCCEEEeCch
Confidence 76332 24677777776532 67888876
No 493
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=76.34 E-value=8.6 Score=30.82 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 38 ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 38 ~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.+.+.++.+.+.|.|++++..-.. .+.+.+.+..+.|-+. .+|++++
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~----vt~~~~~~~v~~ik~~-~lPvilf 61 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQG----VTYEKTDTLIEALRRY-GLPIILF 61 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCc----ccHHHHHHHHHHHhcc-CCCEEEe
Confidence 466788888999999999975432 2377888888888764 4999985
No 494
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=76.34 E-value=9.5 Score=32.66 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 11 EKLKIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
...+.++.+++..++||++ +++...+ .+.++.++++|+|++.+..
T Consensus 173 ~~le~i~~i~~~~~vPVivK~~g~g~s---~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 173 GWLDNIAEIVSALPVPVIVKEVGFGIS---KETAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCc---HHHHHHHHHcCCCEEEECC
Confidence 3446777777766999998 3333222 5777888889999999965
No 495
>cd07898 Adenylation_DNA_ligase Adenylation domain of ATP-dependent DNA Ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Some organisms express a variety of different ligases which appear to be targeted to specific functions. ATP-dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain. The adenylation domain binds ATP and contains many of the active-site residues. The adenylation and C-terminal OB-f
Probab=76.28 E-value=10 Score=29.45 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 5 FKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
..++..||+++++.++... ++.+.-.....+.++..++-+.+.+.|-.|+|+=.|-
T Consensus 126 ~~~p~~eR~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGim~K~~~ 183 (201)
T cd07898 126 LDRPLRERRQLLEELFVEIPGRIRIAPALPVESAEELEAAFARARARGNEGLMLKDPD 183 (201)
T ss_pred hhCCHHHHHHHHHHhhcCCCCcEEEeeeEEcCCHHHHHHHHHHHHHcCCceEEEeCCC
Confidence 4578999999999998765 5555445555677888889999999999999998754
No 496
>PRK07094 biotin synthase; Provisional
Probab=76.18 E-value=36 Score=28.41 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=21.0
Q ss_pred HHhhcCCCeEEecccccchHHHHHHHHHHHc
Q psy9711 148 SGLLVGCAGGINALSAVLGGPICELYDLAKA 178 (198)
Q Consensus 148 ~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~ 178 (198)
.++..|+++++. |+-|+.+++-|+.+..
T Consensus 268 ~~l~~Gan~~~~---~~~~~~~~~~~~~y~~ 295 (323)
T PRK07094 268 KGLKAGANVVMP---NLTPGEYRKLYSLYPG 295 (323)
T ss_pred HHHHcCCceecC---CCCchhhCcccccCCC
Confidence 567788888774 5688888888887754
No 497
>cd07901 Adenylation_DNA_ligase_Arch_LigB Adenylation domain of archaeal and bacterial LigB-like DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculosis LigB. Members of this group contain adeny
Probab=76.11 E-value=9.3 Score=29.89 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
..++..||+++++..+... ++.++-.+...+.++..++-+.+.+.|..|+|+=.|
T Consensus 133 ~~~pl~eR~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~EGiv~K~~ 188 (207)
T cd07901 133 LDLPLSERRKILEEIVPETEAILLAPRIVTDDPEEAEEFFEEALEAGHEGVMVKSL 188 (207)
T ss_pred hcCCHHHHHHHHHHhcCcCCcEEEEEEEecCCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 4578889999998888765 555555555567788888888899999999998754
No 498
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=76.10 E-value=31 Score=25.97 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeCC--CC-cHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGTY--CE-STRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv~--~~-~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
.++-.+.++.+++++ ++|+++-.. .. +.++..++++.+++.|++++=..++.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~ 152 (201)
T cd00945 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGF 152 (201)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 455566666666664 677665432 22 45566666666677777777665543
No 499
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.06 E-value=37 Score=26.85 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
++..=+..+++.+.+++ +..+++.-+..+.++..+..+.+.+.++|++++.+.. .. . .. ...+. +...+
T Consensus 9 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~-~~-~--~~---~~l~~-~~~~~ 80 (277)
T cd06319 9 LRIPFWQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTN-SS-A--AV---TLLKL-AAQAK 80 (277)
T ss_pred CCchHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCc-hh-h--hH---HHHHH-HHHCC
Confidence 33444556666666666 6666665555567777788888888899999886422 11 1 12 23333 34568
Q ss_pred CCEEEEeCC
Q psy9711 84 IPVIIYNNT 92 (198)
Q Consensus 84 ~pi~lYn~P 92 (198)
+|+++.|.+
T Consensus 81 ipvV~~~~~ 89 (277)
T cd06319 81 IPVVIADIG 89 (277)
T ss_pred CCEEEEecC
Confidence 999999864
No 500
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=76.00 E-value=42 Score=27.50 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=61.1
Q ss_pred CeEEEe-CCCCcHHHHHHHHHHHHhc----CCCEEEE--------cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE--
Q psy9711 25 KTIIAG-TYCESTRATIDLTQKAAKA----GANAALI--------LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-- 89 (198)
Q Consensus 25 ~pvi~g-v~~~~~~~~i~~a~~a~~~----Gad~v~~--------~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-- 89 (198)
..+|+| ++-.|-+..++.++..++. |+..+.= ..||.|..- .-++=+++++++.+.+++||+-=
T Consensus 3 ~~viAGPCsvEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTsp~sFqG~-G~eeGL~iL~~vk~~~glpvvTeV~ 81 (258)
T TIGR01362 3 FFLIAGPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSSIHSFRGP-GLEEGLKILQKVKEEFGVPILTDVH 81 (258)
T ss_pred ceEEecCCcccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHhCCceEEEeC
Confidence 457777 5666777788888888886 4444443 345544432 24778899999999999998732
Q ss_pred ---------------eCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 90 ---------------NNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 90 ---------------n~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
.+|.+.- -..+++..+++....|-+|-.
T Consensus 82 ~~~~~~~vae~vDilQIgArn~--rn~~LL~a~g~t~kpV~lKrG 124 (258)
T TIGR01362 82 ESSQCEPVAEVVDIIQIPAFLC--RQTDLLVAAAKTGRIVNVKKG 124 (258)
T ss_pred CHHHHHHHHhhCcEEEeCchhc--chHHHHHHHhccCCeEEecCC
Confidence 3354322 234667777777777777776
Done!