Query psy9711
Match_columns 198
No_of_seqs 167 out of 1169
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 17:41:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9711.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9711hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3flu_A DHDPS, dihydrodipicolin 100.0 8.7E-55 3E-59 360.2 23.9 194 2-198 52-249 (297)
2 3qze_A DHDPS, dihydrodipicolin 100.0 1.1E-54 3.9E-59 361.8 23.9 194 2-198 68-265 (314)
3 2ehh_A DHDPS, dihydrodipicolin 100.0 1.2E-54 4.2E-59 359.0 23.2 194 2-198 45-243 (294)
4 3tak_A DHDPS, dihydrodipicolin 100.0 8.2E-55 2.8E-59 359.5 22.0 194 2-198 46-243 (291)
5 1xky_A Dihydrodipicolinate syn 100.0 1.3E-54 4.3E-59 359.8 23.1 193 2-197 57-253 (301)
6 2rfg_A Dihydrodipicolinate syn 100.0 7.9E-55 2.7E-59 360.4 21.8 193 2-197 45-241 (297)
7 3si9_A DHDPS, dihydrodipicolin 100.0 1E-54 3.5E-59 362.0 22.5 194 2-198 67-265 (315)
8 2ojp_A DHDPS, dihydrodipicolin 100.0 8.8E-55 3E-59 359.5 21.3 194 2-198 46-243 (292)
9 3eb2_A Putative dihydrodipicol 100.0 7.3E-55 2.5E-59 361.1 20.4 193 2-197 49-245 (300)
10 3a5f_A Dihydrodipicolinate syn 100.0 7.6E-55 2.6E-59 359.7 20.4 194 2-198 46-243 (291)
11 2vc6_A MOSA, dihydrodipicolina 100.0 3.2E-54 1.1E-58 356.2 23.0 194 2-198 45-243 (292)
12 1f6k_A N-acetylneuraminate lya 100.0 2.2E-54 7.5E-59 357.3 21.8 192 2-197 49-244 (293)
13 3s5o_A 4-hydroxy-2-oxoglutarat 100.0 5.7E-54 2E-58 356.7 23.9 194 2-197 59-258 (307)
14 2yxg_A DHDPS, dihydrodipicolin 100.0 4.6E-54 1.6E-58 354.7 23.1 192 2-198 45-241 (289)
15 3cpr_A Dihydrodipicolinate syn 100.0 4.6E-54 1.6E-58 356.8 23.2 191 2-197 61-255 (304)
16 3na8_A Putative dihydrodipicol 100.0 2.8E-54 9.5E-59 359.6 21.6 193 2-197 69-266 (315)
17 1o5k_A DHDPS, dihydrodipicolin 100.0 3.2E-54 1.1E-58 358.1 21.3 193 2-197 57-257 (306)
18 3m5v_A DHDPS, dihydrodipicolin 100.0 9.8E-54 3.4E-58 354.5 23.3 193 2-198 52-250 (301)
19 2r8w_A AGR_C_1641P; APC7498, d 100.0 6.2E-54 2.1E-58 359.7 22.4 193 2-197 79-279 (332)
20 2wkj_A N-acetylneuraminate lya 100.0 4.9E-54 1.7E-58 356.6 21.5 192 2-197 56-252 (303)
21 3h5d_A DHDPS, dihydrodipicolin 100.0 1E-53 3.5E-58 355.6 22.7 193 2-197 52-248 (311)
22 3l21_A DHDPS, dihydrodipicolin 100.0 5.1E-54 1.7E-58 356.5 20.0 191 2-197 60-254 (304)
23 2v9d_A YAGE; dihydrodipicolini 100.0 1E-53 3.5E-58 359.6 21.9 194 2-198 76-277 (343)
24 3qfe_A Putative dihydrodipicol 100.0 7.9E-53 2.7E-57 351.2 24.3 195 2-197 56-257 (318)
25 3daq_A DHDPS, dihydrodipicolin 100.0 3.2E-53 1.1E-57 350.1 21.1 190 2-197 47-242 (292)
26 2pcq_A Putative dihydrodipicol 100.0 3.2E-53 1.1E-57 348.7 17.0 188 2-197 42-232 (283)
27 2r91_A 2-keto-3-deoxy-(6-phosp 100.0 7.6E-52 2.6E-56 341.0 21.5 187 2-197 43-233 (286)
28 3d0c_A Dihydrodipicolinate syn 100.0 1.7E-51 5.7E-56 342.8 22.7 188 2-197 57-251 (314)
29 1w3i_A EDA, 2-keto-3-deoxy glu 100.0 1.2E-51 4.2E-56 340.8 20.8 187 2-197 44-234 (293)
30 2hmc_A AGR_L_411P, dihydrodipi 100.0 6.3E-50 2.1E-54 336.4 23.9 189 2-197 71-275 (344)
31 2nuw_A 2-keto-3-deoxygluconate 100.0 2.7E-50 9.1E-55 332.1 20.1 185 2-197 44-232 (288)
32 3fkr_A L-2-keto-3-deoxyarabona 100.0 6.6E-50 2.3E-54 332.5 21.2 190 2-197 53-253 (309)
33 3dz1_A Dihydrodipicolinate syn 100.0 6E-50 2E-54 333.4 19.9 190 2-197 53-254 (313)
34 3e96_A Dihydrodipicolinate syn 100.0 3.6E-49 1.2E-53 329.1 21.9 187 2-196 57-250 (316)
35 3b4u_A Dihydrodipicolinate syn 100.0 2.5E-49 8.7E-54 327.1 15.9 183 2-197 48-240 (294)
36 4dpp_A DHDPS 2, dihydrodipicol 100.0 1.2E-46 4.2E-51 316.5 18.8 182 2-197 104-289 (360)
37 4dnh_A Uncharacterized protein 99.3 1.4E-10 4.6E-15 94.4 15.9 190 4-196 88-313 (396)
38 1jub_A Dihydroorotate dehydrog 97.6 0.012 4.2E-07 47.8 19.4 162 9-176 76-289 (311)
39 2qjg_A Putative aldolase MJ040 97.5 0.00028 9.6E-09 56.6 7.8 133 24-162 79-239 (273)
40 3khj_A Inosine-5-monophosphate 97.4 0.0026 8.8E-08 53.4 13.1 142 6-164 77-240 (361)
41 2e6f_A Dihydroorotate dehydrog 97.0 0.018 6.1E-07 46.9 13.6 145 24-175 93-290 (314)
42 1ep3_A Dihydroorotate dehydrog 96.9 0.049 1.7E-06 44.0 15.5 162 6-174 78-285 (311)
43 3tsm_A IGPS, indole-3-glycerol 96.8 0.11 3.7E-06 41.7 16.2 146 15-179 111-268 (272)
44 4fo4_A Inosine 5'-monophosphat 96.8 0.027 9.3E-07 47.2 13.0 144 6-164 78-244 (366)
45 2qiw_A PEP phosphonomutase; st 96.8 0.019 6.5E-07 45.8 11.4 91 7-107 124-228 (255)
46 3ih1_A Methylisocitrate lyase; 96.7 0.031 1.1E-06 45.7 12.2 90 6-107 140-235 (305)
47 2ekc_A AQ_1548, tryptophan syn 96.6 0.19 6.6E-06 39.9 17.9 161 7-191 76-256 (262)
48 4ef8_A Dihydroorotate dehydrog 96.6 0.11 3.9E-06 43.2 15.4 163 7-176 109-324 (354)
49 3glc_A Aldolase LSRF; TIM barr 96.5 0.084 2.9E-06 42.9 13.7 162 24-191 105-293 (295)
50 3ih1_A Methylisocitrate lyase; 96.5 0.14 4.6E-06 41.9 15.0 156 8-176 13-210 (305)
51 3b8i_A PA4872 oxaloacetate dec 96.5 0.14 4.7E-06 41.5 14.8 159 6-176 3-203 (287)
52 1f76_A Dihydroorotate dehydrog 96.4 0.092 3.2E-06 43.1 13.9 156 12-174 120-334 (336)
53 3nav_A Tryptophan synthase alp 96.4 0.17 5.9E-06 40.5 15.0 141 7-162 79-239 (271)
54 3b8i_A PA4872 oxaloacetate dec 96.4 0.064 2.2E-06 43.4 12.3 90 6-107 132-226 (287)
55 3lg3_A Isocitrate lyase; conse 96.4 0.061 2.1E-06 45.9 12.6 98 7-110 205-344 (435)
56 3oix_A Putative dihydroorotate 96.4 0.34 1.2E-05 40.1 20.0 164 7-176 110-322 (345)
57 3nvt_A 3-deoxy-D-arabino-heptu 96.4 0.089 3.1E-06 44.3 13.5 59 26-87 144-210 (385)
58 3i4e_A Isocitrate lyase; struc 96.3 0.088 3E-06 44.9 13.3 99 6-110 204-344 (439)
59 2hjp_A Phosphonopyruvate hydro 96.3 0.042 1.4E-06 44.6 10.9 98 6-119 128-235 (290)
60 3lye_A Oxaloacetate acetyl hyd 96.3 0.083 2.9E-06 43.1 12.4 92 6-107 139-239 (307)
61 1qop_A Tryptophan synthase alp 96.3 0.32 1.1E-05 38.7 16.7 61 31-92 25-105 (268)
62 1zlp_A PSR132, petal death pro 96.3 0.066 2.3E-06 44.0 11.9 91 6-107 152-249 (318)
63 3eoo_A Methylisocitrate lyase; 96.2 0.11 3.6E-06 42.4 12.6 141 24-176 22-206 (298)
64 3fa4_A 2,3-dimethylmalate lyas 96.2 0.11 3.7E-06 42.4 12.6 91 6-107 131-231 (302)
65 3iv3_A Tagatose 1,6-diphosphat 96.1 0.08 2.7E-06 43.7 11.6 116 43-162 116-282 (332)
66 3eoo_A Methylisocitrate lyase; 96.1 0.087 3E-06 42.9 11.7 91 6-107 134-231 (298)
67 2ze3_A DFA0005; organic waste 96.0 0.073 2.5E-06 42.8 10.6 88 6-107 122-224 (275)
68 1f8m_A Isocitrate lyase, ICL; 95.9 0.16 5.5E-06 43.3 12.9 94 7-106 201-332 (429)
69 1ydn_A Hydroxymethylglutaryl-C 95.9 0.071 2.4E-06 43.0 10.2 82 6-90 112-206 (295)
70 2ftp_A Hydroxymethylglutaryl-C 95.8 0.07 2.4E-06 43.3 10.1 81 7-90 117-210 (302)
71 1s2w_A Phosphoenolpyruvate pho 95.8 0.19 6.4E-06 40.8 12.4 92 6-107 132-230 (295)
72 3eol_A Isocitrate lyase; seatt 95.7 0.12 4.3E-06 44.0 11.4 81 7-93 198-317 (433)
73 2hjp_A Phosphonopyruvate hydro 95.7 0.16 5.5E-06 41.1 11.7 143 24-177 15-203 (290)
74 3hgj_A Chromate reductase; TIM 95.7 0.14 4.6E-06 42.5 11.6 114 8-128 197-332 (349)
75 1s2w_A Phosphoenolpyruvate pho 95.7 0.22 7.5E-06 40.4 12.5 151 16-177 11-207 (295)
76 2qiw_A PEP phosphonomutase; st 95.7 0.15 5.1E-06 40.5 11.2 101 10-119 6-113 (255)
77 2ze3_A DFA0005; organic waste 95.6 0.61 2.1E-05 37.4 14.7 157 7-176 1-203 (275)
78 1w8s_A FBP aldolase, fructose- 95.5 0.26 8.9E-06 39.2 12.2 117 40-162 95-233 (263)
79 3gr7_A NADPH dehydrogenase; fl 95.5 0.17 5.8E-06 41.8 11.5 115 8-128 189-321 (340)
80 1z41_A YQJM, probable NADH-dep 95.5 0.2 6.7E-06 41.3 11.8 114 8-128 189-321 (338)
81 2ekc_A AQ_1548, tryptophan syn 95.4 0.1 3.5E-06 41.5 9.4 62 31-92 25-105 (262)
82 1o66_A 3-methyl-2-oxobutanoate 95.4 0.081 2.8E-06 42.5 8.7 97 24-128 17-128 (275)
83 3igs_A N-acetylmannosamine-6-p 95.4 0.72 2.4E-05 35.9 15.5 139 15-171 60-221 (232)
84 4e38_A Keto-hydroxyglutarate-a 95.3 0.29 9.9E-06 38.3 11.6 153 8-194 68-229 (232)
85 1to3_A Putative aldolase YIHT; 95.3 0.13 4.4E-06 41.9 9.7 78 9-88 137-227 (304)
86 2qjg_A Putative aldolase MJ040 95.2 0.18 6.1E-06 40.0 10.4 73 6-88 124-207 (273)
87 3l5l_A Xenobiotic reductase A; 95.2 0.15 5E-06 42.6 10.1 114 8-128 203-339 (363)
88 3b0p_A TRNA-dihydrouridine syn 95.2 0.18 6E-06 41.9 10.5 113 8-128 110-239 (350)
89 1xg4_A Probable methylisocitra 95.2 0.37 1.3E-05 39.0 12.1 91 6-107 130-227 (295)
90 1eep_A Inosine 5'-monophosphat 95.1 0.22 7.7E-06 41.9 11.2 124 26-164 143-289 (404)
91 1m3u_A 3-methyl-2-oxobutanoate 95.1 0.1 3.5E-06 41.6 8.5 96 24-128 17-127 (264)
92 2w6r_A Imidazole glycerol phos 95.1 0.33 1.1E-05 38.1 11.6 156 13-179 63-249 (266)
93 3tjx_A Dihydroorotate dehydrog 95.1 1.2 4E-05 36.8 15.5 150 24-176 126-324 (354)
94 3q58_A N-acetylmannosamine-6-p 95.1 0.88 3E-05 35.3 15.7 142 15-173 60-223 (229)
95 1vyr_A Pentaerythritol tetrani 94.9 0.2 7E-06 41.7 10.3 110 9-128 207-337 (364)
96 1o66_A 3-methyl-2-oxobutanoate 94.9 0.075 2.6E-06 42.7 7.2 86 11-108 119-222 (275)
97 3vnd_A TSA, tryptophan synthas 94.8 1.2 4.1E-05 35.5 16.9 141 7-162 77-237 (267)
98 1zco_A 2-dehydro-3-deoxyphosph 94.8 0.44 1.5E-05 37.9 11.4 61 25-87 24-91 (262)
99 1jub_A Dihydroorotate dehydrog 94.8 0.28 9.7E-06 39.6 10.5 52 8-59 142-194 (311)
100 3tha_A Tryptophan synthase alp 94.7 0.51 1.7E-05 37.4 11.5 134 14-162 77-229 (252)
101 1h5y_A HISF; histidine biosynt 94.7 0.51 1.7E-05 36.3 11.6 143 11-162 64-229 (253)
102 2gou_A Oxidoreductase, FMN-bin 94.7 0.14 4.8E-06 42.7 8.7 109 9-128 207-336 (365)
103 3f4w_A Putative hexulose 6 pho 94.7 0.98 3.4E-05 34.0 12.9 134 13-162 41-189 (211)
104 1ujp_A Tryptophan synthase alp 94.6 1.3 4.4E-05 35.3 13.8 138 7-162 74-231 (271)
105 3cyv_A URO-D, UPD, uroporphyri 94.4 1.2 4.2E-05 36.5 13.7 127 39-178 189-347 (354)
106 1vs1_A 3-deoxy-7-phosphoheptul 94.4 0.59 2E-05 37.5 11.3 63 24-88 38-107 (276)
107 1oy0_A Ketopantoate hydroxymet 94.3 0.1 3.5E-06 42.0 6.7 86 11-108 137-240 (281)
108 1qwg_A PSL synthase;, (2R)-pho 94.3 0.22 7.7E-06 39.3 8.4 126 4-156 108-245 (251)
109 2rdx_A Mandelate racemase/muco 94.3 1.2 4E-05 37.1 13.5 102 8-127 171-280 (379)
110 3nav_A Tryptophan synthase alp 94.3 1.3 4.5E-05 35.3 13.1 89 28-119 25-132 (271)
111 4exq_A UPD, URO-D, uroporphyri 94.3 0.88 3E-05 37.9 12.6 126 40-178 200-357 (368)
112 2qgy_A Enolase from the enviro 94.2 0.34 1.2E-05 40.6 10.1 118 9-141 177-302 (391)
113 3lab_A Putative KDPG (2-keto-3 94.2 0.97 3.3E-05 34.9 11.8 155 7-196 46-216 (217)
114 3zwt_A Dihydroorotate dehydrog 94.2 1.3 4.6E-05 36.8 13.5 146 24-176 146-345 (367)
115 2ovl_A Putative racemase; stru 94.2 0.41 1.4E-05 39.8 10.4 105 8-127 173-285 (371)
116 1r3s_A URO-D, uroporphyrinogen 94.2 0.63 2.2E-05 38.6 11.6 127 39-178 199-359 (367)
117 1gte_A Dihydropyrimidine dehyd 94.2 3.9 0.00013 38.6 19.8 86 8-93 617-713 (1025)
118 4avf_A Inosine-5'-monophosphat 94.1 0.27 9.3E-06 42.6 9.4 117 36-165 227-366 (490)
119 3sr7_A Isopentenyl-diphosphate 94.1 1.8 6.3E-05 36.0 14.1 137 20-165 139-312 (365)
120 1to3_A Putative aldolase YIHT; 94.1 0.7 2.4E-05 37.5 11.3 138 24-163 85-257 (304)
121 4fxs_A Inosine-5'-monophosphat 94.1 0.18 6.3E-06 43.8 8.2 126 24-164 219-367 (496)
122 1geq_A Tryptophan synthase alp 94.1 1.6 5.4E-05 33.8 15.0 141 8-162 64-222 (248)
123 1p0k_A Isopentenyl-diphosphate 94.0 2.1 7.3E-05 35.1 15.7 145 13-166 104-286 (349)
124 2cw6_A Hydroxymethylglutaryl-C 93.9 0.51 1.8E-05 38.1 10.3 31 161-191 246-279 (298)
125 3p6l_A Sugar phosphate isomera 93.9 0.54 1.8E-05 36.5 10.2 104 5-119 58-165 (262)
126 2e6f_A Dihydroorotate dehydrog 93.9 0.44 1.5E-05 38.5 9.9 51 8-58 144-196 (314)
127 2r14_A Morphinone reductase; H 93.9 0.29 1E-05 41.0 9.0 112 8-128 211-342 (377)
128 3ble_A Citramalate synthase fr 93.9 0.62 2.1E-05 38.3 10.8 81 6-89 129-219 (337)
129 1rvk_A Isomerase/lactonizing e 93.9 0.51 1.7E-05 39.3 10.5 105 8-127 182-295 (382)
130 2pgw_A Muconate cycloisomerase 93.9 0.84 2.9E-05 38.0 11.8 105 8-127 173-284 (384)
131 2qde_A Mandelate racemase/muco 93.8 0.48 1.6E-05 39.7 10.1 105 8-127 171-283 (397)
132 1ka9_F Imidazole glycerol phos 93.8 0.8 2.7E-05 35.5 10.8 84 36-128 30-118 (252)
133 1oy0_A Ketopantoate hydroxymet 93.7 0.26 9E-06 39.6 8.0 98 24-128 34-146 (281)
134 2og9_A Mandelate racemase/muco 93.7 0.41 1.4E-05 40.1 9.6 118 9-141 190-315 (393)
135 2qr6_A IMP dehydrogenase/GMP r 93.7 2.6 9.1E-05 35.1 15.1 140 8-163 140-309 (393)
136 2nzl_A Hydroxyacid oxidase 1; 93.7 2.8 9.4E-05 35.2 15.5 148 2-165 130-341 (392)
137 2eja_A URO-D, UPD, uroporphyri 93.6 1.7 6E-05 35.3 13.0 125 39-178 181-334 (338)
138 1ps9_A 2,4-dienoyl-COA reducta 93.5 0.67 2.3E-05 41.5 11.2 113 8-127 186-323 (671)
139 3qja_A IGPS, indole-3-glycerol 93.5 2.3 7.9E-05 33.9 16.1 131 13-162 102-244 (272)
140 1mdl_A Mandelate racemase; iso 93.5 0.33 1.1E-05 40.1 8.6 97 8-119 171-272 (359)
141 3i4k_A Muconate lactonizing en 93.5 1.2 4.1E-05 37.2 12.1 119 8-141 176-302 (383)
142 1ydo_A HMG-COA lyase; TIM-barr 93.5 0.61 2.1E-05 37.9 9.9 52 35-89 155-207 (307)
143 1rd5_A Tryptophan synthase alp 93.5 0.42 1.4E-05 37.7 8.8 58 31-88 26-99 (262)
144 1nu5_A Chloromuconate cycloiso 93.4 0.48 1.6E-05 39.3 9.4 118 9-141 171-296 (370)
145 3ngj_A Deoxyribose-phosphate a 93.3 0.36 1.2E-05 38.0 7.9 117 32-155 90-224 (239)
146 1y0e_A Putative N-acetylmannos 93.2 1.2 4.2E-05 33.8 10.9 86 13-110 107-196 (223)
147 1ep3_A Dihydroorotate dehydrog 93.2 0.46 1.6E-05 38.2 8.8 50 8-58 148-197 (311)
148 2qkf_A 3-deoxy-D-manno-octulos 93.2 0.32 1.1E-05 39.1 7.7 94 24-119 15-137 (280)
149 3vav_A 3-methyl-2-oxobutanoate 93.1 0.51 1.8E-05 37.8 8.7 96 24-128 29-139 (275)
150 2o56_A Putative mandelate race 93.1 0.54 1.9E-05 39.5 9.4 117 10-141 199-323 (407)
151 3aty_A Tcoye, prostaglandin F2 93.0 2 6.9E-05 35.9 12.7 109 8-128 222-350 (379)
152 2nli_A Lactate oxidase; flavoe 93.0 3.5 0.00012 34.3 14.4 133 24-165 132-318 (368)
153 3ewb_X 2-isopropylmalate synth 93.0 1.2 4.1E-05 35.9 10.9 45 35-82 148-192 (293)
154 3usb_A Inosine-5'-monophosphat 92.9 0.65 2.2E-05 40.5 9.9 125 24-163 244-391 (511)
155 2poz_A Putative dehydratase; o 92.9 0.55 1.9E-05 39.3 9.1 117 10-141 183-307 (392)
156 2v82_A 2-dehydro-3-deoxy-6-pho 92.9 2.3 7.8E-05 32.0 13.9 57 24-88 6-62 (212)
157 4ab4_A Xenobiotic reductase B; 92.8 1.1 3.6E-05 37.4 10.6 105 8-128 198-322 (362)
158 2ftp_A Hydroxymethylglutaryl-C 92.7 3.3 0.00011 33.3 13.7 188 2-193 22-284 (302)
159 3gka_A N-ethylmaleimide reduct 92.7 0.84 2.9E-05 38.0 9.8 105 8-128 206-330 (361)
160 3ozy_A Putative mandelate race 92.6 0.91 3.1E-05 38.0 10.1 119 8-141 177-304 (389)
161 3aam_A Endonuclease IV, endoiv 92.6 2.6 8.8E-05 32.7 12.2 101 6-114 45-165 (270)
162 2p8b_A Mandelate racemase/muco 92.6 0.74 2.5E-05 38.1 9.5 119 8-141 167-294 (369)
163 3r2g_A Inosine 5'-monophosphat 92.5 1.9 6.5E-05 35.9 11.8 140 7-166 75-234 (361)
164 2gl5_A Putative dehydratase pr 92.5 0.46 1.6E-05 40.0 8.2 117 10-141 202-326 (410)
165 3ffs_A Inosine-5-monophosphate 92.5 1.6 5.4E-05 36.9 11.3 114 40-165 146-280 (400)
166 1tzz_A Hypothetical protein L1 92.4 0.64 2.2E-05 38.9 8.9 104 9-127 193-308 (392)
167 2pp0_A L-talarate/galactarate 92.4 0.84 2.9E-05 38.3 9.6 118 9-141 203-328 (398)
168 1icp_A OPR1, 12-oxophytodienoa 92.4 0.69 2.4E-05 38.7 9.0 112 9-128 213-344 (376)
169 1f76_A Dihydroorotate dehydrog 92.3 3.1 0.00011 33.8 12.8 51 9-59 187-247 (336)
170 4a29_A Engineered retro-aldol 92.3 2.9 0.0001 33.0 11.9 139 15-172 95-246 (258)
171 3bjs_A Mandelate racemase/muco 92.3 0.63 2.2E-05 39.5 8.8 104 9-127 212-324 (428)
172 2hsa_B 12-oxophytodienoate red 92.2 1.9 6.5E-05 36.3 11.6 114 8-128 216-362 (402)
173 3rmj_A 2-isopropylmalate synth 92.1 1.4 4.8E-05 36.7 10.5 82 5-89 119-210 (370)
174 3glc_A Aldolase LSRF; TIM barr 92.1 0.4 1.4E-05 38.9 6.9 63 16-80 215-278 (295)
175 3vkj_A Isopentenyl-diphosphate 92.1 4.1 0.00014 33.9 13.3 139 17-165 111-301 (368)
176 1w0m_A TIM, triosephosphate is 92.1 2.7 9.1E-05 32.6 11.4 52 122-174 161-216 (226)
177 2qq6_A Mandelate racemase/muco 91.9 0.77 2.6E-05 38.6 8.9 95 10-119 194-293 (410)
178 3lye_A Oxaloacetate acetyl hyd 91.9 3.3 0.00011 33.6 12.2 154 12-177 12-214 (307)
179 3mkc_A Racemase; metabolic pro 91.9 0.73 2.5E-05 38.7 8.6 98 7-119 186-289 (394)
180 3mqt_A Mandelate racemase/muco 91.9 0.71 2.4E-05 38.7 8.5 105 8-127 182-295 (394)
181 2nql_A AGR_PAT_674P, isomerase 91.8 0.68 2.3E-05 38.7 8.4 102 10-127 193-301 (388)
182 2oz8_A MLL7089 protein; struct 91.8 1.4 4.7E-05 36.8 10.3 106 8-128 172-286 (389)
183 1vrd_A Inosine-5'-monophosphat 91.8 0.93 3.2E-05 39.1 9.4 114 37-163 236-372 (494)
184 3zwt_A Dihydroorotate dehydrog 91.8 4 0.00014 33.9 12.9 53 8-60 197-257 (367)
185 3gd6_A Muconate cycloisomerase 91.8 1.3 4.5E-05 37.0 10.1 119 8-141 168-295 (391)
186 1thf_D HISF protein; thermophI 91.8 3.3 0.00011 31.9 11.9 84 37-129 30-118 (253)
187 1thf_D HISF protein; thermophI 91.8 2.7 9.1E-05 32.5 11.3 144 12-164 62-228 (253)
188 1viz_A PCRB protein homolog; s 91.8 0.19 6.6E-06 39.5 4.6 61 31-96 14-77 (240)
189 3tha_A Tryptophan synthase alp 91.7 2.2 7.4E-05 33.7 10.6 87 28-119 19-123 (252)
190 2czd_A Orotidine 5'-phosphate 91.6 2.4 8.3E-05 32.0 10.7 108 40-162 68-187 (208)
191 3iv3_A Tagatose 1,6-diphosphat 91.6 2.3 7.9E-05 35.0 11.0 103 11-119 144-280 (332)
192 2p10_A MLL9387 protein; putati 91.6 0.69 2.4E-05 37.2 7.6 138 15-162 84-261 (286)
193 2zad_A Muconate cycloisomerase 91.5 3 0.0001 34.0 11.9 98 9-119 166-267 (345)
194 3rr1_A GALD, putative D-galact 91.5 1.2 4.2E-05 37.5 9.6 117 10-141 162-286 (405)
195 1hg3_A Triosephosphate isomera 91.5 2.4 8.3E-05 32.8 10.6 54 122-176 164-221 (225)
196 1zfj_A Inosine monophosphate d 91.5 1.9 6.4E-05 37.1 11.0 115 37-164 232-369 (491)
197 3kru_A NADH:flavin oxidoreduct 91.5 0.99 3.4E-05 37.3 8.8 102 8-116 188-306 (343)
198 2hzg_A Mandelate racemase/muco 91.5 1.2 4.1E-05 37.3 9.5 104 10-128 177-291 (401)
199 1vr6_A Phospho-2-dehydro-3-deo 91.5 2.4 8.1E-05 35.2 11.0 62 25-88 107-175 (350)
200 1o60_A 2-dehydro-3-deoxyphosph 91.4 0.43 1.5E-05 38.6 6.4 94 24-119 18-140 (292)
201 1w8s_A FBP aldolase, fructose- 91.4 0.69 2.4E-05 36.7 7.6 65 14-80 185-252 (263)
202 3q45_A Mandelate racemase/muco 91.4 2.1 7.1E-05 35.5 10.8 104 9-127 167-278 (368)
203 1tkk_A Similar to chloromucona 91.3 2.8 9.5E-05 34.5 11.5 107 8-127 167-281 (366)
204 3vnd_A TSA, tryptophan synthas 91.0 1.2 4.2E-05 35.4 8.7 69 24-92 17-106 (267)
205 1wa3_A 2-keto-3-deoxy-6-phosph 91.0 3.8 0.00013 30.6 11.5 98 42-162 75-180 (205)
206 2ps2_A Putative mandelate race 91.0 3.7 0.00013 33.8 12.0 101 9-127 173-282 (371)
207 3jva_A Dipeptide epimerase; en 90.9 1.7 5.8E-05 35.8 9.8 117 10-141 167-291 (354)
208 2wqp_A Polysialic acid capsule 90.9 2.7 9.1E-05 34.8 10.8 108 25-143 20-158 (349)
209 3l49_A ABC sugar (ribose) tran 90.9 2.5 8.6E-05 32.7 10.5 74 12-93 20-96 (291)
210 1vhn_A Putative flavin oxidore 90.9 0.21 7.3E-06 40.7 4.2 111 8-128 110-227 (318)
211 1ub3_A Aldolase protein; schif 90.9 2.4 8.4E-05 32.7 10.0 120 34-160 68-207 (220)
212 3v3w_A Starvation sensing prot 90.7 1.1 3.9E-05 37.9 8.7 117 10-141 210-334 (424)
213 3l6u_A ABC-type sugar transpor 90.7 1.7 5.9E-05 33.7 9.3 78 8-93 19-99 (293)
214 3ajx_A 3-hexulose-6-phosphate 90.7 4.1 0.00014 30.4 13.5 133 13-162 41-188 (207)
215 2yr1_A 3-dehydroquinate dehydr 90.6 2.4 8.2E-05 33.5 10.0 75 2-80 92-167 (257)
216 3rcy_A Mandelate racemase/muco 90.6 1.8 6.2E-05 36.8 9.9 117 10-141 187-311 (433)
217 2ox4_A Putative mandelate race 90.5 0.58 2E-05 39.2 6.7 95 10-119 193-292 (403)
218 1mzh_A Deoxyribose-phosphate a 90.5 3.9 0.00013 31.4 11.0 49 9-58 101-153 (225)
219 3r0u_A Enzyme of enolase super 90.5 6.1 0.00021 32.8 12.9 120 9-141 169-296 (379)
220 2x7v_A Probable endonuclease 4 90.3 5.2 0.00018 31.0 12.1 111 6-119 43-179 (287)
221 4dwd_A Mandelate racemase/muco 90.3 1.3 4.4E-05 37.2 8.6 96 8-119 173-273 (393)
222 1ujp_A Tryptophan synthase alp 90.2 0.63 2.2E-05 37.2 6.3 62 30-92 23-102 (271)
223 1m3u_A 3-methyl-2-oxobutanoate 90.2 2.1 7.2E-05 34.0 9.2 75 5-89 58-136 (264)
224 3noy_A 4-hydroxy-3-methylbut-2 90.1 1.6 5.5E-05 36.2 8.7 72 13-90 123-211 (366)
225 1tv5_A Dhodehase, dihydroorota 90.0 2.1 7E-05 36.7 9.7 39 24-62 296-336 (443)
226 3b0p_A TRNA-dihydrouridine syn 90.0 4.5 0.00015 33.3 11.5 149 24-177 57-243 (350)
227 1sjd_A N-acylamino acid racema 89.9 1.4 4.9E-05 36.3 8.5 99 13-127 170-276 (368)
228 2gdq_A YITF; mandelate racemas 89.8 0.63 2.2E-05 38.8 6.3 97 8-119 166-268 (382)
229 3eez_A Putative mandelate race 89.8 6.2 0.00021 32.7 12.4 115 9-141 172-294 (378)
230 4e5t_A Mandelate racemase / mu 89.8 2.2 7.6E-05 35.8 9.7 104 9-127 191-302 (404)
231 3i65_A Dihydroorotate dehydrog 89.7 3.4 0.00012 35.0 10.7 55 8-62 232-308 (415)
232 1bwv_A Rubisco, protein (ribul 89.7 2 6.7E-05 37.3 9.3 81 4-91 218-304 (493)
233 3sjn_A Mandelate racemase/muco 89.7 1.1 3.9E-05 37.2 7.7 97 8-119 175-277 (374)
234 3g1w_A Sugar ABC transporter; 89.6 2.7 9.3E-05 32.8 9.7 74 12-93 19-96 (305)
235 1ypf_A GMP reductase; GUAC, pu 89.6 3.2 0.00011 33.9 10.3 42 10-57 134-177 (336)
236 2inf_A URO-D, UPD, uroporphyri 89.5 6.3 0.00022 32.3 12.1 124 40-177 196-347 (359)
237 3r4e_A Mandelate racemase/muco 89.5 1 3.5E-05 38.1 7.4 95 10-119 204-303 (418)
238 1j93_A UROD, uroporphyrinogen 89.4 4.2 0.00014 33.3 10.9 126 40-178 196-350 (353)
239 3dip_A Enolase; structural gen 89.4 4.6 0.00016 33.9 11.4 103 11-127 198-308 (410)
240 2yr1_A 3-dehydroquinate dehydr 89.4 5.7 0.0002 31.2 11.3 93 26-119 21-123 (257)
241 3vcn_A Mannonate dehydratase; 89.2 0.98 3.3E-05 38.4 7.1 115 12-141 213-335 (425)
242 1nvm_A HOA, 4-hydroxy-2-oxoval 89.2 2.7 9.3E-05 34.5 9.6 75 11-89 121-200 (345)
243 3qy7_A Tyrosine-protein phosph 89.1 0.93 3.2E-05 35.9 6.5 74 32-108 15-92 (262)
244 2qdd_A Mandelate racemase/muco 89.0 4.6 0.00016 33.4 11.0 100 9-127 173-280 (378)
245 3lmz_A Putative sugar isomeras 89.0 2.9 9.8E-05 32.2 9.2 103 6-119 57-164 (257)
246 1q7z_A 5-methyltetrahydrofolat 89.0 4.9 0.00017 35.4 11.6 113 8-129 150-285 (566)
247 1vhc_A Putative KHG/KDPG aldol 89.0 1.8 6.3E-05 33.4 7.9 83 14-117 101-184 (224)
248 3tsm_A IGPS, indole-3-glycerol 88.9 7.5 0.00026 30.9 12.4 92 24-127 58-161 (272)
249 3ro6_B Putative chloromuconate 88.9 1.4 4.7E-05 36.4 7.6 119 8-141 166-293 (356)
250 4h3d_A 3-dehydroquinate dehydr 88.7 7.5 0.00026 30.6 12.2 82 24-106 18-103 (258)
251 1i4n_A Indole-3-glycerol phosp 88.6 7.6 0.00026 30.5 14.6 129 16-164 93-234 (251)
252 3ddm_A Putative mandelate race 88.5 2.7 9.2E-05 35.2 9.2 98 8-119 181-283 (392)
253 1wbh_A KHG/KDPG aldolase; lyas 88.5 2.1 7.1E-05 32.8 7.9 74 24-117 109-183 (214)
254 3stp_A Galactonate dehydratase 88.4 3.9 0.00013 34.5 10.2 95 10-119 214-313 (412)
255 3sbf_A Mandelate racemase / mu 88.4 2.2 7.4E-05 35.8 8.6 103 10-127 185-295 (401)
256 1chr_A Chloromuconate cycloiso 88.4 2.3 7.8E-05 35.2 8.7 118 9-141 171-296 (370)
257 1eep_A Inosine 5'-monophosphat 88.4 1.7 5.8E-05 36.5 7.9 86 10-109 179-276 (404)
258 3i65_A Dihydroorotate dehydrog 88.1 9.3 0.00032 32.3 12.3 146 24-176 181-392 (415)
259 3i6e_A Muconate cycloisomerase 88.1 5.7 0.00019 33.0 11.0 118 9-141 176-300 (385)
260 1h5y_A HISF; histidine biosynt 88.1 1.6 5.4E-05 33.5 7.1 65 37-109 33-97 (253)
261 2zbt_A Pyridoxal biosynthesis 88.1 7.2 0.00025 31.0 11.3 152 14-189 68-272 (297)
262 4e4u_A Mandalate racemase/muco 88.1 3.9 0.00013 34.5 10.0 104 9-127 184-295 (412)
263 3tji_A Mandelate racemase/muco 88.1 2.3 8E-05 36.0 8.7 102 11-127 207-316 (422)
264 3m47_A Orotidine 5'-phosphate 88.0 7.6 0.00026 29.9 12.9 139 15-162 55-204 (228)
265 3uug_A Multiple sugar-binding 88.0 2.2 7.7E-05 33.7 8.2 74 12-93 18-94 (330)
266 3t6c_A RSPA, putative MAND fam 87.9 3.3 0.00011 35.3 9.5 103 10-127 224-334 (440)
267 3irs_A Uncharacterized protein 87.7 4.7 0.00016 32.0 9.9 101 14-116 81-187 (291)
268 3tva_A Xylose isomerase domain 87.7 5 0.00017 31.2 10.1 107 6-119 47-185 (290)
269 1u83_A Phosphosulfolactate syn 87.7 0.87 3E-05 36.4 5.3 53 4-58 133-193 (276)
270 2q02_A Putative cytoplasmic pr 87.7 3.4 0.00012 31.8 8.9 81 37-119 85-171 (272)
271 1gp8_A Protein (scaffolding pr 87.7 0.66 2.2E-05 25.5 3.2 28 168-195 13-40 (40)
272 2nli_A Lactate oxidase; flavoe 87.6 4.2 0.00014 33.8 9.8 39 14-58 219-258 (368)
273 3tqk_A Phospho-2-dehydro-3-deo 87.6 11 0.00037 31.1 12.9 151 24-178 50-253 (346)
274 3tdn_A FLR symmetric alpha-bet 87.6 0.38 1.3E-05 37.5 3.2 47 13-63 68-114 (247)
275 1vli_A Spore coat polysacchari 87.4 6.6 0.00023 32.9 10.8 108 25-143 29-168 (385)
276 3vk5_A MOEO5; TIM barrel, tran 87.3 2.6 8.9E-05 33.9 7.9 50 34-88 50-101 (286)
277 2ioy_A Periplasmic sugar-bindi 87.3 4 0.00014 31.6 9.2 73 12-92 16-91 (283)
278 1jcn_A Inosine monophosphate d 87.3 5.2 0.00018 34.6 10.6 94 11-116 282-386 (514)
279 2yzr_A Pyridoxal biosynthesis 87.2 0.8 2.7E-05 37.6 5.0 85 14-119 230-317 (330)
280 3ksm_A ABC-type sugar transpor 87.2 4.4 0.00015 30.9 9.3 73 12-92 15-93 (276)
281 4fo4_A Inosine 5'-monophosphat 87.1 3.7 0.00012 34.2 9.1 90 9-109 133-231 (366)
282 3m9w_A D-xylose-binding peripl 87.1 4 0.00014 32.1 9.2 71 14-92 19-92 (313)
283 1kbi_A Cytochrome B2, L-LCR; f 87.1 2.7 9.3E-05 36.6 8.6 39 14-58 333-372 (511)
284 1vrd_A Inosine-5'-monophosphat 87.0 9.5 0.00033 32.7 12.1 87 10-110 263-361 (494)
285 3tj4_A Mandelate racemase; eno 87.0 2.2 7.6E-05 35.4 7.8 96 9-119 180-280 (372)
286 1sfl_A 3-dehydroquinate dehydr 86.9 4.2 0.00014 31.6 8.9 80 27-108 6-89 (238)
287 3ugv_A Enolase; enzyme functio 86.9 2.2 7.6E-05 35.7 7.8 97 8-119 201-302 (390)
288 3dgb_A Muconate cycloisomerase 86.8 5.7 0.0002 33.0 10.3 118 9-141 177-302 (382)
289 3o1i_D Periplasmic protein TOR 86.8 3.7 0.00013 31.9 8.7 75 9-92 17-96 (304)
290 3rot_A ABC sugar transporter, 86.8 7.1 0.00024 30.3 10.4 76 10-93 16-96 (297)
291 2w6r_A Imidazole glycerol phos 86.7 1.3 4.6E-05 34.6 6.0 57 14-75 190-246 (266)
292 3k30_A Histamine dehydrogenase 86.7 5 0.00017 35.9 10.5 110 8-128 202-338 (690)
293 2h6r_A Triosephosphate isomera 86.7 8.9 0.00031 29.2 14.6 154 10-176 16-215 (219)
294 1ka9_F Imidazole glycerol phos 86.6 1.8 6.1E-05 33.5 6.7 59 13-76 185-243 (252)
295 3o74_A Fructose transport syst 86.6 7.5 0.00026 29.5 10.3 77 8-93 13-92 (272)
296 3ovp_A Ribulose-phosphate 3-ep 86.5 2.1 7.3E-05 33.1 7.0 135 14-164 52-201 (228)
297 3tb6_A Arabinose metabolism tr 86.5 9 0.00031 29.4 10.9 75 13-92 31-108 (298)
298 2nv1_A Pyridoxal biosynthesis 86.5 7.9 0.00027 31.0 10.7 38 14-55 68-105 (305)
299 1rd5_A Tryptophan synthase alp 86.4 4.1 0.00014 31.8 8.8 87 32-128 125-220 (262)
300 3kke_A LACI family transcripti 86.3 5.1 0.00017 31.4 9.3 71 13-93 31-104 (303)
301 2ztj_A Homocitrate synthase; ( 86.3 13 0.00046 30.8 15.7 165 2-170 17-238 (382)
302 1xg4_A Probable methylisocitra 86.2 2.6 8.7E-05 34.1 7.5 157 5-164 59-239 (295)
303 3tdn_A FLR symmetric alpha-bet 86.2 1.9 6.7E-05 33.3 6.7 83 37-128 35-122 (247)
304 2d69_A Ribulose bisphosphate c 86.1 1.5 5E-05 37.4 6.3 170 3-180 193-400 (430)
305 1wv2_A Thiazole moeity, thiazo 86.1 2 6.9E-05 34.1 6.6 62 13-80 176-237 (265)
306 1xm3_A Thiazole biosynthesis p 86.1 11 0.00037 29.6 14.8 144 24-178 65-229 (264)
307 3cwo_X Beta/alpha-barrel prote 86.0 8.7 0.0003 28.5 11.5 155 13-179 41-223 (237)
308 3bo9_A Putative nitroalkan dio 86.0 2 6.7E-05 35.1 6.8 73 24-109 124-196 (326)
309 2fvy_A D-galactose-binding per 86.0 7.9 0.00027 30.0 10.3 73 12-92 17-93 (309)
310 3my9_A Muconate cycloisomerase 85.9 2.7 9.2E-05 34.9 7.8 104 9-127 174-285 (377)
311 3toy_A Mandelate racemase/muco 85.9 6.8 0.00023 32.6 10.3 97 8-119 195-296 (383)
312 3eeg_A 2-isopropylmalate synth 85.9 1.3 4.3E-05 36.3 5.6 79 8-89 116-204 (325)
313 4adt_A Pyridoxine biosynthetic 85.8 0.46 1.6E-05 38.5 2.9 58 24-89 21-84 (297)
314 3kdn_A Rubisco, ribulose bisph 85.8 3.2 0.00011 35.5 8.2 172 2-183 195-423 (444)
315 3egc_A Putative ribose operon 85.7 6.6 0.00023 30.3 9.7 76 8-93 19-97 (291)
316 3dg3_A Muconate cycloisomerase 85.7 4.8 0.00017 33.2 9.2 94 11-119 170-268 (367)
317 1i60_A IOLI protein; beta barr 85.6 5.5 0.00019 30.6 9.1 82 37-119 84-175 (278)
318 3o07_A Pyridoxine biosynthesis 85.6 1.7 5.9E-05 34.9 6.0 84 14-119 188-275 (291)
319 8abp_A L-arabinose-binding pro 85.5 5.2 0.00018 31.1 9.0 73 10-91 15-90 (306)
320 3bw2_A 2-nitropropane dioxygen 85.5 6.4 0.00022 32.4 9.9 81 24-116 145-236 (369)
321 3go2_A Putative L-alanine-DL-g 85.5 15 0.00052 30.7 12.7 98 12-126 199-303 (409)
322 1gte_A Dihydropyrimidine dehyd 85.5 3.3 0.00011 39.0 8.9 94 8-109 687-807 (1025)
323 2y88_A Phosphoribosyl isomeras 85.4 10 0.00036 28.8 11.2 142 14-164 64-229 (244)
324 3fcp_A L-Ala-D/L-Glu epimerase 85.4 7.5 0.00026 32.2 10.3 118 9-141 176-301 (381)
325 3ivs_A Homocitrate synthase, m 85.3 4.3 0.00015 34.5 8.8 81 7-90 144-230 (423)
326 2dri_A D-ribose-binding protei 85.3 3.6 0.00012 31.7 7.9 74 11-92 15-91 (271)
327 1qtw_A Endonuclease IV; DNA re 85.2 11 0.00038 29.0 12.1 111 7-119 44-180 (285)
328 3dbi_A Sugar-binding transcrip 85.1 6.6 0.00022 31.2 9.6 73 11-92 77-152 (338)
329 3jy6_A Transcriptional regulat 85.1 6.6 0.00023 30.1 9.4 74 8-92 18-94 (276)
330 4dye_A Isomerase; enolase fami 85.1 15 0.00053 30.6 12.1 103 8-127 195-304 (398)
331 4ay7_A Methylcobalamin\: coenz 85.0 14 0.00049 30.0 18.1 112 11-128 132-282 (348)
332 2f6u_A GGGPS, (S)-3-O-geranylg 85.0 1.3 4.4E-05 34.6 5.0 53 31-88 14-66 (234)
333 1vhn_A Putative flavin oxidore 84.8 11 0.00037 30.4 10.7 148 24-179 58-233 (318)
334 3sgz_A Hydroxyacid oxidase 2; 84.7 2.5 8.4E-05 35.1 6.8 40 15-59 208-247 (352)
335 2fn9_A Ribose ABC transporter, 84.7 6.8 0.00023 30.2 9.3 73 12-92 17-92 (290)
336 3o1n_A 3-dehydroquinate dehydr 84.6 8.6 0.0003 30.6 9.9 104 24-128 38-152 (276)
337 3e61_A Putative transcriptiona 84.6 4.7 0.00016 30.9 8.3 74 8-93 19-96 (277)
338 4f0h_A Ribulose bisphosphate c 84.6 3.6 0.00012 35.7 8.0 167 3-179 217-438 (493)
339 1wv2_A Thiazole moeity, thiazo 84.6 13 0.00046 29.4 14.9 145 24-181 73-241 (265)
340 3nwr_A A rubisco-like protein; 84.5 4.5 0.00016 34.4 8.5 170 2-184 201-414 (432)
341 2hbv_A 2-amino-3-carboxymucona 84.4 5.5 0.00019 32.0 8.9 61 30-92 120-180 (334)
342 4dxk_A Mandelate racemase / mu 84.4 4.8 0.00016 33.7 8.6 94 11-119 195-293 (400)
343 3aal_A Probable endonuclease 4 84.4 11 0.00036 29.7 10.4 111 7-119 50-184 (303)
344 1h1y_A D-ribulose-5-phosphate 84.3 11 0.00037 28.7 10.1 135 14-164 54-205 (228)
345 3l5a_A NADH/flavin oxidoreduct 84.3 3.3 0.00011 35.1 7.6 89 34-128 261-360 (419)
346 3vni_A Xylose isomerase domain 84.3 13 0.00044 28.9 12.2 113 6-119 43-185 (294)
347 3q58_A N-acetylmannosamine-6-p 84.2 12 0.00043 28.7 14.4 119 24-158 17-154 (229)
348 1vzw_A Phosphoribosyl isomeras 84.0 12 0.00042 28.5 12.2 142 14-164 65-226 (244)
349 1mzh_A Deoxyribose-phosphate a 84.0 7.3 0.00025 29.8 9.0 117 32-155 65-199 (225)
350 2hxt_A L-fuconate dehydratase; 83.9 5.2 0.00018 33.9 8.8 96 9-119 225-326 (441)
351 1mxs_A KDPG aldolase; 2-keto-3 83.8 6.1 0.00021 30.4 8.4 81 13-116 109-192 (225)
352 3oa3_A Aldolase; structural ge 83.8 15 0.00052 29.4 11.5 138 16-160 98-265 (288)
353 3hs3_A Ribose operon repressor 83.8 9.7 0.00033 29.2 9.8 69 9-92 22-94 (277)
354 1dbq_A Purine repressor; trans 83.7 11 0.00039 28.8 10.2 73 11-92 21-96 (289)
355 3fs2_A 2-dehydro-3-deoxyphosph 83.7 16 0.00054 29.5 11.6 91 25-119 42-163 (298)
356 1ypf_A GMP reductase; GUAC, pu 83.7 16 0.00055 29.6 15.1 135 12-164 83-243 (336)
357 2gjl_A Hypothetical protein PA 83.6 3.6 0.00012 33.3 7.5 82 15-109 110-192 (328)
358 4e38_A Keto-hydroxyglutarate-a 83.6 4.3 0.00015 31.5 7.5 79 14-113 118-197 (232)
359 3k4h_A Putative transcriptiona 83.5 9.5 0.00033 29.3 9.7 73 11-93 27-102 (292)
360 1yxy_A Putative N-acetylmannos 83.5 13 0.00043 28.2 13.1 117 39-167 90-222 (234)
361 1ub3_A Aldolase protein; schif 83.5 7 0.00024 30.1 8.6 31 26-56 122-152 (220)
362 1xm3_A Thiazole biosynthesis p 83.5 2.7 9.3E-05 33.2 6.4 56 15-76 169-224 (264)
363 3sgz_A Hydroxyacid oxidase 2; 83.4 18 0.00061 29.9 18.7 130 24-165 121-306 (352)
364 3r12_A Deoxyribose-phosphate a 83.4 6.8 0.00023 31.0 8.6 122 32-160 106-247 (260)
365 2agk_A 1-(5-phosphoribosyl)-5- 83.3 4.7 0.00016 31.7 7.7 62 13-76 190-257 (260)
366 1tqx_A D-ribulose-5-phosphate 83.2 14 0.00047 28.5 10.2 30 135-164 175-205 (227)
367 3tml_A 2-dehydro-3-deoxyphosph 83.2 16 0.00056 29.2 11.2 61 25-87 18-92 (288)
368 3p3b_A Mandelate racemase/muco 83.2 2.5 8.7E-05 35.2 6.4 93 10-119 185-287 (392)
369 3dx5_A Uncharacterized protein 83.0 11 0.00038 29.1 9.9 81 37-119 84-173 (286)
370 3igs_A N-acetylmannosamine-6-p 83.0 14 0.00048 28.4 13.9 119 24-158 17-154 (232)
371 4e4f_A Mannonate dehydratase; 82.8 3.1 0.00011 35.2 6.9 91 14-119 216-311 (426)
372 1jcn_A Inosine monophosphate d 82.7 5.2 0.00018 34.6 8.5 112 37-164 254-391 (514)
373 3fa4_A 2,3-dimethylmalate lyas 82.7 3.7 0.00013 33.3 6.9 149 16-176 9-205 (302)
374 1p0k_A Isopentenyl-diphosphate 82.5 15 0.00052 29.8 10.9 43 12-58 166-210 (349)
375 3mwc_A Mandelate racemase/muco 82.4 8.7 0.0003 32.1 9.5 113 13-141 192-312 (400)
376 3qfw_A Ribulose-1,5-bisphospha 82.3 4.8 0.00016 33.7 7.6 150 3-165 171-347 (378)
377 3ffs_A Inosine-5-monophosphate 82.3 11 0.00036 31.8 9.9 89 11-110 171-267 (400)
378 2htm_A Thiazole biosynthesis p 82.0 3.6 0.00012 32.7 6.4 62 13-80 165-228 (268)
379 2yxb_A Coenzyme B12-dependent 82.0 7.4 0.00025 28.2 7.9 96 73-174 36-144 (161)
380 2fep_A Catabolite control prot 81.8 15 0.00053 28.3 10.3 71 12-92 31-104 (289)
381 3cwo_X Beta/alpha-barrel prote 81.8 3.6 0.00012 30.7 6.4 59 14-77 164-222 (237)
382 1wdd_A Ribulose bisphosphate c 81.8 5.5 0.00019 34.4 8.0 114 3-123 208-341 (477)
383 1p4c_A L(+)-mandelate dehydrog 81.7 5.3 0.00018 33.3 7.8 40 13-57 214-253 (380)
384 2nx9_A Oxaloacetate decarboxyl 81.7 9.6 0.00033 32.7 9.6 52 35-89 156-207 (464)
385 2rjo_A Twin-arginine transloca 81.7 8.9 0.0003 30.4 9.0 75 10-92 18-97 (332)
386 2dvt_A Thermophilic reversible 81.7 6.6 0.00023 31.1 8.2 67 24-91 94-166 (327)
387 1pii_A N-(5'phosphoribosyl)ant 81.6 24 0.00082 30.1 15.9 131 16-166 100-242 (452)
388 3huu_A Transcription regulator 81.6 12 0.00041 29.1 9.7 73 11-93 41-116 (305)
389 2c6q_A GMP reductase 2; TIM ba 81.6 19 0.00066 29.5 11.1 43 10-57 146-189 (351)
390 3d02_A Putative LACI-type tran 81.6 14 0.00049 28.5 10.1 73 12-92 19-95 (303)
391 3fok_A Uncharacterized protein 81.6 4.5 0.00015 32.8 7.0 65 16-80 229-296 (307)
392 1lt8_A Betaine-homocysteine me 81.5 4.9 0.00017 33.9 7.6 114 8-128 163-311 (406)
393 2z6i_A Trans-2-enoyl-ACP reduc 81.5 1.5 5.3E-05 35.7 4.4 73 24-109 110-182 (332)
394 1vc4_A Indole-3-glycerol phosp 81.5 5.1 0.00017 31.4 7.3 61 24-90 45-113 (254)
395 1gox_A (S)-2-hydroxy-acid oxid 81.5 16 0.00053 30.2 10.6 40 14-58 215-254 (370)
396 3hcw_A Maltose operon transcri 81.4 13 0.00044 28.8 9.8 72 11-92 26-100 (295)
397 3sz8_A 2-dehydro-3-deoxyphosph 81.1 20 0.00067 28.7 12.5 30 148-177 229-270 (285)
398 3brq_A HTH-type transcriptiona 81.0 15 0.00051 28.1 10.0 71 13-92 37-110 (296)
399 2vk2_A YTFQ, ABC transporter p 80.8 14 0.00049 28.7 9.9 72 13-92 18-92 (306)
400 3brs_A Periplasmic binding pro 80.7 6.5 0.00022 30.2 7.7 74 11-92 21-99 (289)
401 1tjy_A Sugar transport protein 80.5 13 0.00045 29.2 9.6 72 13-92 19-94 (316)
402 1gox_A (S)-2-hydroxy-acid oxid 80.1 24 0.00081 29.1 15.3 133 24-165 122-314 (370)
403 3tcs_A Racemase, putative; PSI 80.0 16 0.00055 30.4 10.2 92 13-119 186-282 (388)
404 1zlp_A PSR132, petal death pro 80.0 7.9 0.00027 31.5 8.1 157 5-164 81-261 (318)
405 3vav_A 3-methyl-2-oxobutanoate 80.0 11 0.00038 30.0 8.7 75 5-89 70-148 (275)
406 2h3h_A Sugar ABC transporter, 79.9 18 0.00062 28.2 10.2 73 12-92 15-91 (313)
407 4avf_A Inosine-5'-monophosphat 79.7 7.8 0.00027 33.4 8.4 84 12-108 257-351 (490)
408 3gdm_A Orotidine 5'-phosphate 79.6 10 0.00034 30.1 8.4 81 5-88 2-90 (267)
409 3h75_A Periplasmic sugar-bindi 79.6 12 0.00042 29.8 9.2 73 12-93 19-96 (350)
410 2nwr_A 2-dehydro-3-deoxyphosph 79.3 22 0.00074 28.1 11.3 94 24-119 3-126 (267)
411 3khj_A Inosine-5-monophosphate 79.1 3.5 0.00012 34.2 5.8 87 11-108 132-226 (361)
412 2zvi_A 2,3-diketo-5-methylthio 79.1 6.6 0.00022 33.4 7.5 167 3-180 194-400 (425)
413 3inp_A D-ribulose-phosphate 3- 78.8 3.6 0.00012 32.3 5.5 133 14-162 75-225 (246)
414 1ydo_A HMG-COA lyase; TIM-barr 78.8 24 0.00081 28.4 15.3 188 2-193 20-282 (307)
415 2qyg_A Ribulose bisphosphate c 78.8 7 0.00024 33.5 7.6 167 3-180 225-430 (452)
416 1qpz_A PURA, protein (purine n 78.7 18 0.00063 28.6 10.0 72 12-92 73-147 (340)
417 1o94_A Tmadh, trimethylamine d 78.7 12 0.00043 33.7 9.8 114 8-128 194-335 (729)
418 4fxs_A Inosine-5'-monophosphat 78.7 11 0.00036 32.6 9.0 88 11-109 258-354 (496)
419 3fk4_A Rubisco-like protein; s 78.3 6.3 0.00022 33.3 7.2 165 3-180 181-388 (414)
420 3vzx_A Heptaprenylglyceryl pho 78.3 5 0.00017 31.1 6.1 43 42-89 23-65 (228)
421 2iks_A DNA-binding transcripti 78.1 21 0.00071 27.5 10.0 72 12-92 35-109 (293)
422 1sfl_A 3-dehydroquinate dehydr 78.1 17 0.00058 28.1 9.2 71 6-80 79-153 (238)
423 3c3k_A Alanine racemase; struc 77.8 18 0.0006 27.8 9.4 71 11-92 22-95 (285)
424 1gud_A ALBP, D-allose-binding 77.8 11 0.00039 29.0 8.3 74 11-92 15-93 (288)
425 3h5o_A Transcriptional regulat 77.7 17 0.00059 28.7 9.6 68 14-91 79-149 (339)
426 2oem_A 2,3-diketo-5-methylthio 77.7 7.6 0.00026 32.8 7.5 167 3-180 180-387 (413)
427 2rgy_A Transcriptional regulat 77.4 16 0.00056 28.1 9.2 72 11-92 22-99 (290)
428 2wje_A CPS4B, tyrosine-protein 77.3 3.6 0.00012 31.8 5.1 58 32-89 19-80 (247)
429 1qo2_A Molecule: N-((5-phospho 77.3 3.8 0.00013 31.5 5.2 62 13-75 177-240 (241)
430 3iwp_A Copper homeostasis prot 77.2 26 0.0009 28.0 12.7 142 14-166 79-244 (287)
431 1wa3_A 2-keto-3-deoxy-6-phosph 77.1 7.4 0.00025 28.9 6.7 65 24-109 104-169 (205)
432 3pm6_A Putative fructose-bisph 76.8 2 6.8E-05 34.9 3.5 96 5-110 8-104 (306)
433 3o63_A Probable thiamine-phosp 76.7 2.5 8.5E-05 33.1 4.0 24 6-29 75-101 (243)
434 3fok_A Uncharacterized protein 76.7 28 0.00097 28.1 10.6 90 12-119 161-273 (307)
435 2f6k_A Metal-dependent hydrola 76.7 7 0.00024 30.6 6.8 55 34-91 100-156 (307)
436 1vcv_A Probable deoxyribose-ph 76.6 8.7 0.0003 29.7 7.1 50 11-60 99-151 (226)
437 1xi3_A Thiamine phosphate pyro 76.6 4.3 0.00015 30.3 5.3 79 26-116 108-189 (215)
438 1yad_A Regulatory protein TENI 76.4 9.2 0.00031 28.8 7.2 60 42-109 122-183 (221)
439 1ykw_A Rubisco-like protein; b 76.3 7 0.00024 33.3 6.9 167 3-180 205-410 (435)
440 1of8_A Phospho-2-dehydro-3-deo 76.1 32 0.0011 28.5 12.8 100 24-126 68-213 (370)
441 3w01_A Heptaprenylglyceryl pho 76.1 8.4 0.00029 30.0 6.9 43 42-89 28-70 (235)
442 1tqj_A Ribulose-phosphate 3-ep 76.0 12 0.0004 28.7 7.7 137 14-164 52-205 (230)
443 1jvn_A Glutamine, bifunctional 76.0 10 0.00034 33.3 8.1 70 38-119 453-526 (555)
444 2wm1_A 2-amino-3-carboxymucona 75.9 8.3 0.00028 30.9 7.2 66 24-91 110-176 (336)
445 1vcf_A Isopentenyl-diphosphate 75.8 6.6 0.00023 31.9 6.6 64 14-81 245-309 (332)
446 3kjx_A Transcriptional regulat 75.6 27 0.00093 27.6 10.2 68 13-90 84-154 (344)
447 2p10_A MLL9387 protein; putati 75.6 15 0.00052 29.4 8.3 88 11-108 12-118 (286)
448 1ydn_A Hydroxymethylglutaryl-C 75.4 28 0.00097 27.5 17.2 190 2-195 18-282 (295)
449 3nur_A Amidohydrolase; TIM bar 75.3 9 0.00031 31.5 7.3 61 29-91 133-194 (357)
450 1tx2_A DHPS, dihydropteroate s 75.2 11 0.00036 30.5 7.5 53 36-89 62-121 (297)
451 3o1n_A 3-dehydroquinate dehydr 75.1 18 0.00061 28.7 8.8 72 5-80 114-187 (276)
452 3flu_A DHDPS, dihydrodipicolin 75.0 8 0.00027 30.9 6.8 43 6-48 24-71 (297)
453 3cpr_A Dihydrodipicolinate syn 75.0 9.1 0.00031 30.8 7.1 54 35-88 35-90 (304)
454 3elf_A Fructose-bisphosphate a 74.9 8.4 0.00029 31.8 6.9 86 5-93 2-97 (349)
455 3kws_A Putative sugar isomeras 74.8 11 0.00038 29.2 7.5 82 37-119 104-199 (287)
456 1r0m_A N-acylamino acid racema 74.7 14 0.00049 30.3 8.4 98 14-127 178-282 (375)
457 2fyw_A Conserved hypothetical 74.7 22 0.00076 27.9 9.2 52 40-92 49-103 (267)
458 2egz_A 3-dehydroquinate dehydr 74.7 16 0.00054 27.9 8.1 69 27-102 3-71 (219)
459 2h9a_B CO dehydrogenase/acetyl 74.6 7.5 0.00025 31.6 6.5 53 37-91 74-130 (310)
460 3q94_A Fructose-bisphosphate a 74.6 14 0.00048 29.6 8.0 101 4-111 111-229 (288)
461 1vhc_A Putative KHG/KDPG aldol 74.6 26 0.0009 26.7 14.1 145 13-193 56-211 (224)
462 2x7x_A Sensor protein; transfe 74.6 29 0.00099 27.2 11.2 61 24-92 36-96 (325)
463 3ceu_A Thiamine phosphate pyro 74.6 3 0.0001 31.5 3.9 42 6-57 36-77 (210)
464 3ik4_A Mandelate racemase/muco 74.5 34 0.0012 28.0 12.3 34 13-46 175-210 (365)
465 3usb_A Inosine-5'-monophosphat 74.3 13 0.00044 32.2 8.3 39 13-56 285-324 (511)
466 3vkj_A Isopentenyl-diphosphate 74.3 4.8 0.00016 33.5 5.4 45 12-59 175-220 (368)
467 2rag_A Dipeptidase; aminohydro 74.2 10 0.00035 32.0 7.5 92 24-117 151-281 (417)
468 2o20_A Catabolite control prot 74.2 24 0.00081 27.8 9.5 71 12-92 78-151 (332)
469 2zc8_A N-acylamino acid racema 74.2 12 0.00042 30.6 7.9 98 14-127 171-275 (369)
470 3b4u_A Dihydrodipicolinate syn 74.1 8 0.00027 30.9 6.5 55 34-88 21-77 (294)
471 1vc4_A Indole-3-glycerol phosp 73.9 29 0.001 27.0 11.4 127 15-162 97-238 (254)
472 2y88_A Phosphoribosyl isomeras 73.9 8.5 0.00029 29.3 6.5 72 38-119 150-225 (244)
473 1jvn_A Glutamine, bifunctional 73.8 8 0.00027 33.9 6.9 59 13-75 485-543 (555)
474 2yw3_A 4-hydroxy-2-oxoglutarat 73.8 13 0.00044 28.0 7.4 67 24-110 104-171 (207)
475 1xky_A Dihydrodipicolinate syn 73.7 9.1 0.00031 30.7 6.8 26 6-31 29-55 (301)
476 4hnl_A Mandelate racemase/muco 73.6 13 0.00045 31.2 8.0 103 10-127 205-315 (421)
477 1l6s_A Porphobilinogen synthas 73.6 7.9 0.00027 31.4 6.2 48 35-91 224-271 (323)
478 3sr7_A Isopentenyl-diphosphate 73.4 5.8 0.0002 33.0 5.6 46 11-59 193-239 (365)
479 2tps_A Protein (thiamin phosph 73.3 4.8 0.00016 30.4 4.8 68 16-88 107-177 (227)
480 1n8f_A DAHP synthetase; (beta/ 73.2 38 0.0013 27.9 13.5 100 24-127 53-199 (350)
481 3bbl_A Regulatory protein of L 73.2 15 0.0005 28.3 7.8 69 14-92 25-96 (287)
482 3gv0_A Transcriptional regulat 73.1 15 0.0005 28.3 7.8 71 12-92 25-98 (288)
483 3d8u_A PURR transcriptional re 73.1 19 0.00063 27.3 8.3 71 12-92 18-91 (275)
484 1vzw_A Phosphoribosyl isomeras 73.1 7.3 0.00025 29.8 5.9 11 99-109 177-187 (244)
485 1vcf_A Isopentenyl-diphosphate 73.1 24 0.00082 28.5 9.3 43 13-59 171-214 (332)
486 2yci_X 5-methyltetrahydrofolat 73.1 9.7 0.00033 30.2 6.7 53 35-89 32-84 (271)
487 3bil_A Probable LACI-family tr 73.0 30 0.001 27.5 9.9 71 12-92 81-154 (348)
488 2chr_A Chloromuconate cycloiso 72.8 14 0.00046 30.3 7.8 97 8-119 170-271 (370)
489 2ztj_A Homocitrate synthase; ( 72.8 37 0.0013 28.1 10.5 80 6-89 106-195 (382)
490 3qja_A IGPS, indole-3-glycerol 72.7 33 0.0011 27.0 13.0 61 24-90 51-120 (272)
491 3l21_A DHDPS, dihydrodipicolin 72.6 8 0.00027 31.1 6.2 44 6-49 32-80 (304)
492 2ojp_A DHDPS, dihydrodipicolin 72.6 8.7 0.0003 30.6 6.4 26 6-31 18-44 (292)
493 3gbv_A Putative LACI-family tr 72.5 23 0.00078 27.2 8.8 53 32-92 51-103 (304)
494 1mjh_A Protein (ATP-binding do 72.4 16 0.00053 25.5 7.2 75 14-92 83-160 (162)
495 3r2g_A Inosine 5'-monophosphat 72.3 5.2 0.00018 33.2 5.1 39 13-57 129-169 (361)
496 3ble_A Citramalate synthase fr 72.3 38 0.0013 27.5 16.5 187 2-191 33-287 (337)
497 2nv1_A Pyridoxal biosynthesis 72.2 8.7 0.0003 30.7 6.4 59 14-78 197-257 (305)
498 3obk_A Delta-aminolevulinic ac 72.1 6.9 0.00024 32.2 5.6 48 35-91 245-292 (356)
499 1f6y_A 5-methyltetrahydrofolat 72.1 8.5 0.00029 30.3 6.1 54 34-89 22-75 (262)
500 3dz1_A Dihydrodipicolinate syn 72.0 9.1 0.00031 30.9 6.4 53 36-88 28-81 (313)
No 1
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=100.00 E-value=8.7e-55 Score=360.24 Aligned_cols=194 Identities=30% Similarity=0.408 Sum_probs=187.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 52 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va 129 (297)
T 3flu_A 52 GESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPS--QEGIYQHFKTIA 129 (297)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |+.++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus 130 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~G~~G~ 208 (297)
T 3flu_A 130 EATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVKEASGNIGSNIELIN-RAPEGFVVLSGDDHTALPFMLCGGHGV 208 (297)
T ss_dssp HHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH-HSCTTCEEEECCGGGHHHHHHTTCCEE
T ss_pred HhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEECcHHHHHHHHhCCCCEE
Confidence 9999999999999999999999999999999999999999 9999988884 567899999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 209 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l 249 (297)
T 3flu_A 209 ITVAANAAPKLFADMCRAALQGDIALARELNDRLIPIYDTM 249 (297)
T ss_dssp EESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTT
T ss_pred EechHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 2
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=100.00 E-value=1.1e-54 Score=361.76 Aligned_cols=194 Identities=28% Similarity=0.443 Sum_probs=187.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 68 GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 145 (314)
T 3qze_A 68 GESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPT--QEGMYQHFRHIA 145 (314)
T ss_dssp GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |+.++.++++ ..+++|.||+|.|.++++.+..|++|+
T Consensus 146 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~Ga~G~ 224 (314)
T 3qze_A 146 EAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIKEATGDLQRAKEVIE-RVGKDFLVYSGDDATAVELMLLGGKGN 224 (314)
T ss_dssp HHSCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHH-HSCTTSEEEESCGGGHHHHHHTTCCEE
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEcCCCCHHHHHHHHH-HcCCCeEEEecChHHHHHHHHCCCCEE
Confidence 9999999999999999999999999999999999999999 9999998884 567899999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 225 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l 265 (314)
T 3qze_A 225 ISVTANVAPRAMSDLCAAAMRGDAAAARAINDRLMPLHKAL 265 (314)
T ss_dssp EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred EecHHhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
No 3
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=1.2e-54 Score=358.96 Aligned_cols=194 Identities=32% Similarity=0.443 Sum_probs=186.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 45 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 122 (294)
T 2ehh_A 45 GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPT--QRGLYEHFKTVA 122 (294)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++++||++||+|.+||++++++++.+|+ ++|||+|||++ |..++.++++ ..+++|.||+|+|.++++++..|++|
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G 201 (294)
T 2ehh_A 123 QEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASKESTPNMDRISEIVK-RLGESFSVLSGDDSLTLPMMALGAKG 201 (294)
T ss_dssp HHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHH-HHCTTSEEEESSGGGHHHHHHTTCCE
T ss_pred HhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-hcCCCeEEEECcHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999 89999999999 9999988874 34679999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 202 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~ 243 (294)
T 2ehh_A 202 VISVANNVMPREVKELIRAALEGDFRRAREIHYYLHDLFKVL 243 (294)
T ss_dssp EEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653
No 4
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=100.00 E-value=8.2e-55 Score=359.50 Aligned_cols=194 Identities=29% Similarity=0.454 Sum_probs=187.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++++ ++++++||++|+
T Consensus 46 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~ia 123 (291)
T 3tak_A 46 GEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPT--QEGLYQHYKAIA 123 (291)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|++||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.+|+|.|.++++.+..|++|+
T Consensus 124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ssgd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~ 202 (291)
T 3tak_A 124 EAVELPLILYNVPGRTGVDLSNDTAVRLAEIPNIVGIKDATGDVPRGKALID-ALNGKMAVYSGDDETAWELMLLGADGN 202 (291)
T ss_dssp HHCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH-HHTTSSEEEECCHHHHHHHHHTTCCEE
T ss_pred HhcCCCEEEEecccccCCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEECcHHHHHHHHHCCCCEE
Confidence 9999999999999999999999999999999999999999 9999988874 456899999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 203 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l 243 (291)
T 3tak_A 203 ISVTANIAPKAMSEVCAVAIAKDEQQAKTLNNKIANLHNIL 243 (291)
T ss_dssp EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHT
T ss_pred EechhhhcHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
No 5
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=100.00 E-value=1.3e-54 Score=359.78 Aligned_cols=193 Identities=33% Similarity=0.567 Sum_probs=186.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 57 GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 134 (301)
T 1xky_A 57 GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPS--QEGMYQHFKAIA 134 (301)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|+|.++++++..|++|+
T Consensus 135 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~G~~G~ 213 (301)
T 1xky_A 135 ESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIE-KTADDFAVYSGDDGLTLPAMAVGAKGI 213 (301)
T ss_dssp HTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSSCHHHHHHHHH-HSCTTCEEEESSGGGHHHHHHTTCCEE
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH-hcCCCeEEEECcHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999999999 9999998884 456799999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.+++++
T Consensus 214 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 253 (301)
T 1xky_A 214 VSVASHVIGNEMQEMIAAFQAGEFKKAQKLHQLLVRVTDS 253 (301)
T ss_dssp EESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998864
No 6
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=100.00 E-value=7.9e-55 Score=360.40 Aligned_cols=193 Identities=25% Similarity=0.373 Sum_probs=186.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 45 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 122 (297)
T 2rfg_A 45 GESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPS--QEGLYQHFKMVH 122 (297)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCC--HHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKds~gd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~G~~G~ 201 (297)
T 2rfg_A 123 DAIDIPIIVYNIPPRAVVDIKPETMARLAALPRIVGVKDATTDLARISRERM-LINKPFSFLSGDDMTAIAYNASGGQGC 201 (297)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCTTHHHHHHT-TCCSCCEEEESCGGGHHHHHHTTCCEE
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHCCCCEE
Confidence 9999999999999999999999999999999999999999 8999988884 456799999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 202 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 241 (297)
T 2rfg_A 202 ISVSANIAPALYGQMQTATLQGDFREALRIHDLLAPLHEA 241 (297)
T ss_dssp EESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 7
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=100.00 E-value=1e-54 Score=362.04 Aligned_cols=194 Identities=29% Similarity=0.404 Sum_probs=187.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 67 GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va 144 (315)
T 3si9_A 67 GESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPN--QRGLYTHFSSIA 144 (315)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++++||++||+|.+||++++++++.+|++ +|||+|||++ |+.++.++++ ..+++|.||+|+|.++++.+..|++|
T Consensus 145 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~~l~~-~~~~~f~v~~G~d~~~l~~l~~G~~G 223 (315)
T 3si9_A 145 KAISIPIIIYNIPSRSVIDMAVETMRDLCRDFKNIIGVKDATGKIERASEQRE-KCGKDFVQLSGDDCTALGFNAHGGVG 223 (315)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHHHHHH-HHCSSSEEEESCGGGHHHHHHTTCCE
T ss_pred HcCCCCEEEEeCchhhCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHH-HcCCCeEEEecCHHHHHHHHHcCCCE
Confidence 999999999999999999999999999997 9999999999 9999988884 45789999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 224 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~l 265 (315)
T 3si9_A 224 CISVSSNVAPKLCAQLHAACLCSDYKTALKLNDLLMPLNRAV 265 (315)
T ss_dssp EEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred EEecHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 8
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=100.00 E-value=8.8e-55 Score=359.48 Aligned_cols=194 Identities=24% Similarity=0.400 Sum_probs=186.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++++ ++++++||++|+
T Consensus 46 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia 123 (292)
T 2ojp_A 46 GESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPS--QEGLYQHFKAIA 123 (292)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|+|.++++.+..|++|+
T Consensus 124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~s~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~ 202 (292)
T 2ojp_A 124 EHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGIXEATGNLTRVNQIKE-LVSDDFVLLSGDDASALDFMQYGGHGV 202 (292)
T ss_dssp TTCSSCEEEECCHHHHSCCCCHHHHHHHHTSTTEEEC-CCSCCTHHHHHHHT-TSCTTSBCEESCGGGHHHHHHTTCCEE
T ss_pred HhcCCCEEEEeCcchhccCCCHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHCCCcEE
Confidence 9999999999999999999999999999999999999999 9999998884 456799999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 203 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~ 243 (292)
T 2ojp_A 203 ISVTANVAARDMAQMCKLAAEGHFAEARVINERLMPLHNKL 243 (292)
T ss_dssp EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred EeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
No 9
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=100.00 E-value=7.3e-55 Score=361.06 Aligned_cols=193 Identities=25% Similarity=0.401 Sum_probs=186.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 49 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va 126 (300)
T 3eb2_A 49 GEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLK--DAQIESYFRAIA 126 (300)
T ss_dssp GTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCC--HHHHHHHHHHHH
T ss_pred cCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|.|.++++.+..|++|+
T Consensus 127 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~ 205 (300)
T 3eb2_A 127 DAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIKDASTNTGRLLSIIN-RCGDALQVFSASAHIPAAVMLIGGVGW 205 (300)
T ss_dssp HHCSSCEEEEECTTTCSSCCCHHHHHHHHTSTTEEEEEECSSBHHHHHHHHH-HHGGGSEEEECTTSCHHHHHHTTCCEE
T ss_pred HHCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHH-HcCCCeEEEeCcHHHHHHHHhCCCCEE
Confidence 9999999999999999999999999999999999999999 8999988874 456789999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 206 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 245 (300)
T 3eb2_A 206 MAGPACIAPRQSVALYELCKAQRWDEALMLQRKLWRVNEA 245 (300)
T ss_dssp EEGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHTHHHHH
T ss_pred EeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
No 10
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=100.00 E-value=7.6e-55 Score=359.72 Aligned_cols=194 Identities=26% Similarity=0.403 Sum_probs=185.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++++ ++++++||++|+
T Consensus 46 GE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia 123 (291)
T 3a5f_A 46 GEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTT--QKGLVKHFKAVS 123 (291)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHC-CTG
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|+|.++++.+..|++|+
T Consensus 124 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~s~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G~ 202 (291)
T 3a5f_A 124 DAVSTPIIIYNVPGRTGLNITPGTLKELCEDKNIVAVXEASGNISQIAQIKA-LCGDKLDIYSGNDDQIIPILALGGIGV 202 (291)
T ss_dssp GGCCSCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH-HHGGGSEEEESCGGGHHHHHHTTCCEE
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCCCeEEEeCcHHHHHHHHHCCCCEE
Confidence 9999999999999999999999999999999999999999 9999988874 345789999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 203 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~ 243 (291)
T 3a5f_A 203 ISVLANVIPEDVHNMCELYLNGKVNEALKIQLDSLALTNAL 243 (291)
T ss_dssp EESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHT
T ss_pred EecHHHhcHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
No 11
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.2e-54 Score=356.16 Aligned_cols=194 Identities=27% Similarity=0.432 Sum_probs=186.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++++ ++++++||++|+
T Consensus 45 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia 122 (292)
T 2vc6_A 45 GESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPT--QEGIYQHFKAID 122 (292)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++++||++||+|.+||++++++++.+|++ +|||+|+|++ |..++.++++ ..+++|.||+|+|.++++.+..|++|
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK~s~gd~~~~~~~~~-~~~~~f~v~~G~d~~~~~~l~~G~~G 201 (292)
T 2vc6_A 123 AASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVXDATGNLLRPSLERM-ACGEDFNLLTGEDGTALGYMAHGGHG 201 (292)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSCCTHHHHHHHH-HSCTTSEEEESCGGGHHHHHHTTCCE
T ss_pred HhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEecCCCCHHHHHHHHH-HcCCCEEEEECchHHHHHHHHcCCCE
Confidence 999999999999999999999999999998 9999999999 8999988874 45679999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 202 ~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~ 243 (292)
T 2vc6_A 202 CISVTANVAPALCADFQQACLNGDFAAALKLQDRLMPLHRAL 243 (292)
T ss_dssp EEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred EEecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988653
No 12
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=100.00 E-value=2.2e-54 Score=357.28 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=185.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++++ ++++++||++|+
T Consensus 49 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~va 126 (293)
T 1f6k_A 49 GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFS--FPEIKHYYDTII 126 (293)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ . .++|.||+|.|.++++.+..|++|+
T Consensus 127 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s~gd~~~~~~~~~-~-~~~f~v~~G~d~~~~~~l~~G~~G~ 204 (293)
T 1f6k_A 127 AETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKK-A-YPNHLIWAGFDEMMLPAASLGVDGA 204 (293)
T ss_dssp HHHCCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHH-H-CTTSEEEECCGGGHHHHHHTTCSEE
T ss_pred HhCCCCEEEEECccccCcCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHH-h-CCCeEEEECcHHHHHHHHHCCCcEE
Confidence 9999999999999999999999999999999999999999 8999988874 3 4689999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 205 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 244 (293)
T 1f6k_A 205 IGSTFNVNGVRARQIFELTKAGKLKEALEIQHVTNDLIEG 244 (293)
T ss_dssp EESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EeCHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 13
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=100.00 E-value=5.7e-54 Score=356.74 Aligned_cols=194 Identities=39% Similarity=0.728 Sum_probs=185.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC--CCCCHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ--KKMTEDLIYEHFIS 77 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~--~~~~~~~i~~y~~~ 77 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||+|++ ++ ++++++||++
T Consensus 59 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s--~~~l~~~f~~ 136 (307)
T 3s5o_A 59 GEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMS--SAALIHHYTK 136 (307)
T ss_dssp GTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCC--HHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCC--HHHHHHHHHH
Confidence 8999999999999999999998 9999999999999999999999999999999999999997 56 9999999999
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCC
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCA 155 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~ 155 (198)
|++++++||++||+|.+||++++++++.+|+++|||+|||++ |+.++.++++...+++|.||+|+|.++++++..|++
T Consensus 137 ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~G~~ 216 (307)
T 3s5o_A 137 VADLSPIPVVLYSVPANTGLDLPVDAVVTLSQHPNIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGSAGFLMASYALGAV 216 (307)
T ss_dssp HHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHHHTTTSSCEEEESSGGGHHHHHHHTCC
T ss_pred HHhhcCCCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEEEcCCCCHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999 999998887533357899999999999999999999
Q ss_pred eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 156 GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 156 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
|+||+++|++|+.++++|+++++||+++|+++|+++.++..+
T Consensus 217 G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~~~~~ 258 (307)
T 3s5o_A 217 GGVCALANVLGAQVCQLERLCCTGQWEDAQKLQHRLIEPNAA 258 (307)
T ss_dssp EEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654
No 14
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=100.00 E-value=4.6e-54 Score=354.70 Aligned_cols=192 Identities=24% Similarity=0.397 Sum_probs=185.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++++ ++++++||++|+
T Consensus 45 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~ia 122 (289)
T 2yxg_A 45 GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPT--QEGLRKHFGKVA 122 (289)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++++||++||+|.+||++++++++.+|+ ++|||+|||++ |..++.++++ .. +|.||+|+|.++++++..|++|
T Consensus 123 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiK~s~gd~~~~~~~~~-~~--~f~v~~G~d~~~~~~l~~G~~G 199 (289)
T 2yxg_A 123 ESINLPIVLYNVPSRTAVNLEPKTVKLLAEEYSNISAVKEANPNLSQVSELIH-DA--KITVLSGNDELTLPIIALGGKG 199 (289)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCSCTHHHHHHHH-HT--CSEEEESCGGGHHHHHHTTCCE
T ss_pred HhcCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHH-hC--CeEEEECcHHHHHHHHHCCCCE
Confidence 99999999999999999999999999999 89999999999 8999988874 33 8999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 200 ~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~ 241 (289)
T 2yxg_A 200 VISVVANIVPKEFVEMVNYALEGDFEKAREIHYKLFPLMKAM 241 (289)
T ss_dssp EEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred EEeChhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987653
No 15
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=100.00 E-value=4.6e-54 Score=356.84 Aligned_cols=191 Identities=25% Similarity=0.422 Sum_probs=184.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 61 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~--~~~l~~~f~~ia 138 (304)
T 3cpr_A 61 GESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPS--QEGLLAHFGAIA 138 (304)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++. . +|.||+|+|.++++.+..|++|+
T Consensus 139 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~~-~--~f~v~~G~d~~~l~~l~~G~~G~ 215 (304)
T 3cpr_A 139 AATEVPICLYDIPGRSGIPIESDTMRRLSELPTILAVXDAKGDLVAATSLIKE-T--GLAWYSGDDPLNLVWLALGGSGF 215 (304)
T ss_dssp HHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHHH-H--CCEEEECSGGGHHHHHHTTCCEE
T ss_pred HhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHh-c--CEEEEECcHHHHHHHHHCCCCEE
Confidence 9999999999999999999999999999999999999999 89999888743 3 89999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 216 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 255 (304)
T 3cpr_A 216 ISVIGHAAPTALRELYTSFEEGDLVRAREINAKLSPLVAA 255 (304)
T ss_dssp EESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred EecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 16
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.8e-54 Score=359.57 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=186.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 69 GE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 146 (315)
T 3na8_A 69 GEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLN--EAEVFQHYRAVG 146 (315)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHH-HcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKL-AHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L-~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++++||++||+|.+||++++++++.+| +++|||+|||++ |..++.++++ ..+++|.||+|.|.++++.+..|++|
T Consensus 147 ~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKdssgd~~~~~~~~~-~~~~~f~v~~G~D~~~l~~l~~G~~G 225 (315)
T 3na8_A 147 EAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKESTGDIQRMHKLRL-LGEGRVPFYNGCNPLALEAFVAGAKG 225 (315)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEECSSCHHHHHHHHH-HTTTCSCEEECCGGGHHHHHHHTCSE
T ss_pred HhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHH-HcCCCEEEEeCchHHHHHHHHCCCCE
Confidence 9999999999999999999999999999 799999999999 8999998884 56789999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 226 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 266 (315)
T 3na8_A 226 WCSAAPNLIPTLNGQLYQAVLDGDLEKARALFYRQLPLLDF 266 (315)
T ss_dssp EEESGGGTCHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHH
T ss_pred EEechhhhCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998865
No 17
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=100.00 E-value=3.2e-54 Score=358.15 Aligned_cols=193 Identities=23% Similarity=0.379 Sum_probs=185.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 57 GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 134 (306)
T 1o5k_A 57 GESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPT--QEGLYQHYKYIS 134 (306)
T ss_dssp GTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCCC---CeEEEecChhhHHHHhhcC
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKDL---NFSVFAGSAGYLLSGLLVG 153 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~~---~~~v~~G~d~~~~~~l~~G 153 (198)
+++++||++||+|.+||++++++++.+|+ ++|||+|||++ |..++.++++ ..++ +|.||+|+|.++++++..|
T Consensus 135 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~~~~~-~~~~~~~~f~v~~G~d~~~l~~l~~G 213 (306)
T 1o5k_A 135 ERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIXEANPDIDQIDRTVS-LTKQARSDFMVWSGNDDRTFYLLCAG 213 (306)
T ss_dssp TTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECCCCHHHHHHHHH-HHHHHCTTCEEEESSGGGHHHHHHHT
T ss_pred HhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHH-hcCCCCCcEEEEECcHHHHHHHHHCC
Confidence 99999999999999999999999999999 89999999999 8999888874 3334 8999999999999999999
Q ss_pred CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++|++|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 214 ~~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 257 (306)
T 1o5k_A 214 GDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLMKA 257 (306)
T ss_dssp CCEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998864
No 18
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=100.00 E-value=9.8e-54 Score=354.52 Aligned_cols=193 Identities=28% Similarity=0.394 Sum_probs=186.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++++ ++++++||++|
T Consensus 52 GE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~v 129 (301)
T 3m5v_A 52 GESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPT--QQGLYEHYKAI 129 (301)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHH
Confidence 8999999999999999999998 599999999999999999999999999999999999999998 99999999999
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCC
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCA 155 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~ 155 (198)
++++++||++||+|.+||++++++++.+|+++ |||+|||++ |..++.++++ .. ++|.||+|.|.++++.+..|++
T Consensus 130 a~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiKdssgd~~~~~~~~~-~~-~~f~v~~G~d~~~~~~l~~G~~ 207 (301)
T 3m5v_A 130 AQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEASGNIDKCVDLLA-HE-PRMMLISGEDAINYPILSNGGK 207 (301)
T ss_dssp HHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEECSSCHHHHHHHHH-HC-TTSEEEECCGGGHHHHHHTTCC
T ss_pred HHhCCCCEEEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-hC-CCeEEEEccHHHHHHHHHcCCC
Confidence 99999999999999999999999999999987 999999999 9999999885 45 8999999999999999999999
Q ss_pred eEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 156 GGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 156 G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
|++|+++|++|+.++++|+++++||+++|+++|+++.|+++.+
T Consensus 208 G~is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~ 250 (301)
T 3m5v_A 208 GVISVTSNLLPDMISALTHFALDENYKEAKKINDELYNINKIL 250 (301)
T ss_dssp EEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHT
T ss_pred EEEehHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998753
No 19
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=6.2e-54 Score=359.65 Aligned_cols=193 Identities=26% Similarity=0.295 Sum_probs=186.2
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 79 GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s--~~~l~~~f~~VA 156 (332)
T 2r8w_A 79 GIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLT--QEEAYHHFAAVA 156 (332)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C----HHHHHHHHhhcCCCCeEEEecChhhHHHHhhcC
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D----NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVG 153 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d----~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G 153 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ | ..++.++++ ..+++|.||+|.|.++++.+..|
T Consensus 157 ~a~~lPiilYn~P~~tg~~l~~e~~~~La~~pnIvgiKdssgd~~~~~~~~~~l~~-~~~~~f~v~~G~D~~~l~~l~~G 235 (332)
T 2r8w_A 157 GATALPLAIYNNPTTTRFTFSDELLVRLAYIPNIRAIKMPLPADADYAGELARLRP-KLSDDFAIGYSGDWGCTDATLAG 235 (332)
T ss_dssp HHCSSCEEEECCHHHHCCCCCHHHHHHHHTSTTEEEEEECCCTTCCHHHHHHHHTT-TSCTTCEEEECCHHHHHHHHHTT
T ss_pred HhcCCCEEEEeCccccCcCCCHHHHHHHHcCCCEEEEEeCCCCchhHHHHHHHHHH-hcCCCEEEEeCchHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999 8 889988873 45678999999999999999999
Q ss_pred CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++|++|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 236 ~~G~is~~anv~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 279 (332)
T 2r8w_A 236 GDTWYSVVAGLLPVPALQLMRAAQAGNAEEAKRLDATFQPLWAL 279 (332)
T ss_dssp CSEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHH
T ss_pred CCEEEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 20
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=100.00 E-value=4.9e-54 Score=356.55 Aligned_cols=192 Identities=21% Similarity=0.385 Sum_probs=185.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 56 GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 133 (303)
T 2wkj_A 56 GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFS--FEEHCDHYRAII 133 (303)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCC-CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSP-IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~-~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G 156 (198)
++++ +||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ . .++|.||+|.|.++++.+..|++|
T Consensus 134 ~a~~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s~gd~~~~~~~~~-~-~~~f~v~~G~d~~~~~~l~~G~~G 211 (303)
T 2wkj_A 134 DSADGLPMVVYNIPALSGVKLTLDQINTLVTLPGVGALXQTSGDLYQMEQIRR-E-HPDLVLYNGYDNIFASGLLAGADG 211 (303)
T ss_dssp HHHTTCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECCCCHHHHHHHHH-H-CTTCEEEECCGGGHHHHHHHTCCE
T ss_pred HhCCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHH-h-CCCeEEEeCcHHHHHHHHHCCCCE
Confidence 9999 999999999999999999999999999999999999 8999988884 3 569999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 157 GINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
++|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus 212 ~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 252 (303)
T 2wkj_A 212 GIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDL 252 (303)
T ss_dssp EEETTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
No 21
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=100.00 E-value=1e-53 Score=355.62 Aligned_cols=193 Identities=26% Similarity=0.478 Sum_probs=186.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCC-CEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGA-NAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Ga-d~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+ |+++++||+|++++ ++++++||++|
T Consensus 52 GE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s--~~~l~~~f~~v 129 (311)
T 3h5d_A 52 AESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPS--QEGMYQHFKAI 129 (311)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCC--HHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCC--HHHHHHHHHHH
Confidence 8999999999999999999998 9999999999999999999999999997 99999999999998 99999999999
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
++++++||++||+|++||++++++++.+|+++|||+|||++ |..++.++++ ..+++|.||+|.|.++++++..|++|+
T Consensus 130 a~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssd~~~~~~~~~-~~~~~f~v~~G~d~~~l~~l~~Ga~G~ 208 (311)
T 3h5d_A 130 ADASDLPIIIYNIPGRVVVELTPETMLRLADHPNIIGVKECTSLANMAYLIE-HKPEEFLIYTGEDGDAFHAMNLGADGV 208 (311)
T ss_dssp HHSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSCHHHHHHHHH-HCCSSCEEEECCGGGHHHHHHHTCCEE
T ss_pred HHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEEeCCCHHHHHHHHH-HcCCCEEEEECcHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999 9999988874 567889999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 209 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 248 (311)
T 3h5d_A 209 ISVASHTNGDEMHEMFTAIAESDMKKAAAIQRKFIPKVNA 248 (311)
T ss_dssp EESTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EechhhhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 22
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=100.00 E-value=5.1e-54 Score=356.51 Aligned_cols=191 Identities=26% Similarity=0.401 Sum_probs=184.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 60 GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 137 (304)
T 3l21_A 60 GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPP--QRGLQAHFTAVA 137 (304)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |+.++.+++ . +++|.+|+|.|.++++.+..|++|+
T Consensus 138 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~-~--~~~f~v~~G~d~~~l~~l~~Ga~G~ 214 (304)
T 3l21_A 138 DATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVXDAKADLHSGAQIM-A--DTGLAYYSGDDALNLPWLRMGATGF 214 (304)
T ss_dssp TSCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHH-H--HHCCEEEESSGGGHHHHHHHTCCEE
T ss_pred HhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEECCCCCHHHHHHHh-c--CCCeEEEeCchHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999999999999 999988877 2 4789999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 215 is~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 254 (304)
T 3l21_A 215 ISVIAHLAAGQLRELLSAFGSGDIATARKINIAVAPLCNA 254 (304)
T ss_dssp EESTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHH
T ss_pred EecHHhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 23
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=100.00 E-value=1e-53 Score=359.59 Aligned_cols=194 Identities=27% Similarity=0.392 Sum_probs=186.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 76 GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s--~~~l~~~f~~VA 153 (343)
T 2v9d_A 76 GEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVS--EANLIRYFEQVA 153 (343)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC--CHHHHHHHHhhcCC---CCeEEEecChhhHHHHhhcC
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT--DNIKLANMANQTKD---LNFSVFAGSAGYLLSGLLVG 153 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s--d~~~~~~~~~~~~~---~~~~v~~G~d~~~~~~l~~G 153 (198)
+++++||++||+|.+||++++++++.+|+ ++|||+|||++ |..++.++++ ..+ ++|.||+|+|.++++.+..|
T Consensus 154 ~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgiKdssgd~~~~~~l~~-~~~~~~~~f~v~~G~D~~~l~~l~~G 232 (343)
T 2v9d_A 154 DSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIKDTIDSVAHLRSMIH-TVKGAHPHFTVLCGYDDHLFNTLLLG 232 (343)
T ss_dssp HTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEEEECCSCHHHHHHHHH-HHHHHCTTCEEEESSGGGHHHHHHTT
T ss_pred HhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHHH-hcCCCCCCEEEEECcHHHHHHHHHCC
Confidence 99999999999999999999999999999 89999999999 9999888874 334 68999999999999999999
Q ss_pred CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhcC
Q psy9711 154 CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVTL 198 (198)
Q Consensus 154 ~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~~ 198 (198)
++|+||+++|++|+.++++|+++++||+++|+++|+++.++++.+
T Consensus 233 a~G~is~~anv~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~~ 277 (343)
T 2v9d_A 233 GDGAISASGNFAPQVSVNLLKAWRDGDVAKAAGYHQTLLQIPQMY 277 (343)
T ss_dssp CCEECCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHGGGGG
T ss_pred CCEEEeCHHHhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998653
No 24
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=100.00 E-value=7.9e-53 Score=351.22 Aligned_cols=195 Identities=36% Similarity=0.552 Sum_probs=179.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISV 78 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i 78 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||+|+ +|. +++++++||++|
T Consensus 56 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~-~~~~l~~~f~~i 134 (318)
T 3qfe_A 56 AEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKAT-TPPVIKSFFDDV 134 (318)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CC-CHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCC-CHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999877 442 399999999999
Q ss_pred HccCCCCEEEEeCCCCc-ccccCHHHHHHHHc-CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCC
Q psy9711 79 ADNSPIPVIIYNNTFVT-NIDISVDTLVKLAH-HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGC 154 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~t-g~~l~~~~l~~L~~-~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~ 154 (198)
++++++||++||+|++| |++++++++.+|++ +|||+|||++ |+.++.++++...+++|.+|+|+|.++++++..|+
T Consensus 135 a~a~~lPiilYn~P~~t~g~~l~~~~~~~La~~~pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~~l~~l~~G~ 214 (318)
T 3qfe_A 135 SCQSPLPVVIYNFPGVCNGIDLDSDMITTIARKNPNVVGVKLTCASVGKITRLAATLPPAAFSVFGGQSDFLIGGLSVGS 214 (318)
T ss_dssp HHHCSSCEEEEECCC----CCCCHHHHHHHHHHCTTEEEEEESSCCHHHHHHHHHHSCGGGCEEEESCGGGHHHHHHTTC
T ss_pred HhhCCCCEEEEeCCcccCCCCCCHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHhcCCCCEEEEEecHHHHHHHHHCCC
Confidence 99999999999999997 99999999999997 9999999998 99999888743334789999999999999999999
Q ss_pred CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|++|+++|++|+.++++|+++++||+++|+++|+++.++++.
T Consensus 215 ~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~~~~~ 257 (318)
T 3qfe_A 215 AGCIAAFANVFPKTVSKIYELYKAGKVDQAMELHRKAALAESP 257 (318)
T ss_dssp CEEECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred CEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987653
No 25
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=100.00 E-value=3.2e-53 Score=350.10 Aligned_cols=190 Identities=26% Similarity=0.402 Sum_probs=181.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 47 GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~--~~~l~~~f~~ia 124 (292)
T 3daq_A 47 AESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTN--QRGLVKHFEAIA 124 (292)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCC--HHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC-CeEEEecChhhHHHHhhcCCCe
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL-NFSVFAGSAGYLLSGLLVGCAG 156 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~-~~~v~~G~d~~~~~~l~~G~~G 156 (198)
+++++||++||+|.+||++++++++.+|+++|||+|||++ |+.++.++++ ..++ +|.||+|.|.++++++..|++|
T Consensus 125 ~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK~ssgd~~~~~~~~~-~~~~~~f~v~~G~d~~~~~~l~~G~~G 203 (292)
T 3daq_A 125 DAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALKDATNDFEYLEEVKK-RIDTNSFALYSGNDDNVVEYYQRGGQG 203 (292)
T ss_dssp HHHCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEEECCCCHHHHHHHHT-TSCTTTSEEEESCGGGHHHHHHTTCCE
T ss_pred HhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH-HCCCCCEEEEECCHHHHHHHHhcCCCE
Confidence 9999999999999999999999999999999999999999 9999998884 4556 8999999999999999999999
Q ss_pred EEecccccchHHHHHHHHHHHcC-CHHHHHHHHHHhhchhhc
Q psy9711 157 GINALSAVLGGPICELYDLAKAG-KWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 157 ~is~~~n~~P~~~~~l~~~~~~g-d~~~A~~l~~~~~~l~~~ 197 (198)
++|+++|++|+.++++|+++++| |+++|++ ++.|+++.
T Consensus 204 ~is~~~n~~P~~~~~l~~a~~~g~d~~~A~~---~l~~l~~~ 242 (292)
T 3daq_A 204 VISVIANVIPKEFQALYDAQQSGLDIQDQFK---PIGTLLSA 242 (292)
T ss_dssp EEESGGGTCHHHHHHHHHHHHTTCCCHHHHH---HHHHHHHH
T ss_pred EEeCHHHhhHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHH
Confidence 99999999999999999999999 9999998 67776653
No 26
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-53 Score=348.65 Aligned_cols=188 Identities=26% Similarity=0.386 Sum_probs=181.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC-CCCHHHHHHHHHHHHc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK-KMTEDLIYEHFISVAD 80 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~-~~~~~~i~~y~~~i~~ 80 (198)
||+++||.+||+++++.+++ |+|||+|+|+++|+++++++++|+++|||+++++||||+++ + ++++++||++|++
T Consensus 42 GE~~~Ls~~Er~~v~~~~~~--rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~--~~~l~~~f~~va~ 117 (283)
T 2pcq_A 42 GEGVHLTPEERARGLRALRP--RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSL--GAGLLRYYEALAE 117 (283)
T ss_dssp TTGGGSCHHHHHHHHHTCCC--SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGT--TTHHHHHHHHHHH
T ss_pred cCchhcCHHHHHHHHHHHHh--CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCC--HHHHHHHHHHHhc
Confidence 89999999999999999998 99999999999999999999999999999999999999999 8 9999999999999
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeEE
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGI 158 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~i 158 (198)
++||++||+|.+||++++++++.+|+++|||+|||++ |..++.++++ .+++|.+|+|+|.++++++..|++|++
T Consensus 118 --~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiKdssgd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~G~~G~i 193 (283)
T 2pcq_A 118 --KMPLFLYHVPQNTKVDLPLEAVEALAPHPNVLGIKDSSGDLSRIAFYQA--RLQEFRVYTGHAPTFLGALALGAEGGI 193 (283)
T ss_dssp --HSCEEEEECHHHHCCCCCHHHHHHHTTSTTEEEEEECSCCHHHHHHHHH--HCSSCEEEECCGGGHHHHHHTTCCEEE
T ss_pred --CCCEEEEeCccccCcCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHh--cCCCEEEEECcHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999999999999999999 9999988874 567999999999999999999999999
Q ss_pred ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
|+++|++|+.++++|+++++||+++|+++|+++.+++++
T Consensus 194 s~~~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 232 (283)
T 2pcq_A 194 LAAANLAPRAYRALLDHFREGRLAEAQELQKKLFPLGDL 232 (283)
T ss_dssp CGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred eCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 27
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=100.00 E-value=7.6e-52 Score=341.03 Aligned_cols=187 Identities=24% Similarity=0.281 Sum_probs=180.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ + ||+|+|+++|+++++++++|+++|||+++++||||++ ++ ++++++||++|+
T Consensus 43 GE~~~Ls~~Er~~v~~~~~~~~~g--vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~va 118 (286)
T 2r91_A 43 GLGPALSLQEKMELTDAATSAARR--VIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRLS--ERQIAKYFRDLC 118 (286)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHCSS--EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCC--EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999999 6 9999999999999999999999999999999999999 88 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+ +|||+|||++ |..++.++++ .+++|.||+|+|.++++++..|++|+
T Consensus 119 ~a~~lPiilYn~P~~tg~~l~~~~~~~---~pnivgiKds~gd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~G~~G~ 193 (286)
T 2r91_A 119 SAVSIPVFLYNYPAAVGRDVDARAAKE---LGCIRGVKDTNESLAHTLAYKR--YLPQARVYNGSDSLVFASFAVRLDGV 193 (286)
T ss_dssp HHCSSCEEEEECHHHHSSCCCHHHHHH---HSCEEEEEECCSCHHHHHHHHH--HCTTSEEEECCGGGHHHHHHTTCSEE
T ss_pred HhcCCCEEEEeChhhcCCCCCHHHHHh---cCCEEEEEeCCCCHHHHHHHHh--cCCCEEEEEccHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999 8999999999 9999988884 56799999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 194 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 233 (286)
T 2r91_A 194 VASSANYLPELLAGIRDAVAAGDIERARSLQFLLDEIVES 233 (286)
T ss_dssp CCGGGTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 28
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=100.00 E-value=1.7e-51 Score=342.80 Aligned_cols=188 Identities=20% Similarity=0.239 Sum_probs=180.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+ +|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 57 GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 133 (314)
T 3d0c_A 57 GEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYIT--DAGAVEYYRNII 133 (314)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCC--HHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 8999999999 9999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC--CeEEEecChh-hHHHHhhcCC
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL--NFSVFAGSAG-YLLSGLLVGC 154 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~--~~~v~~G~d~-~~~~~l~~G~ 154 (198)
+++++||++|| +||+ ++++++.+|+++|||+|||++ |+.++.++++ ..++ +|.||+|+|. ++++.+..|+
T Consensus 134 ~a~~lPiilYn---~tg~-l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~~~f~v~~G~d~~~~~~~l~~G~ 208 (314)
T 3d0c_A 134 EALDAPSIIYF---KDAH-LSDDVIKELAPLDKLVGIKYAINDIQRVTQVMR-AVPKSSNVAFICGTAEKWAPFFYHAGA 208 (314)
T ss_dssp HHSSSCEEEEE---CCTT-SCTHHHHHHTTCTTEEEEEECCCCHHHHHHHHH-HSCGGGCCEEEETTHHHHHHHHHHHTC
T ss_pred HhCCCCEEEEe---CCCC-cCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCCCEEEEEeCcHHHHHHHHHcCC
Confidence 99999999999 8999 999999999999999999999 9999988874 4456 8999999999 9999999999
Q ss_pred CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|++|+++|++|+.++++|+++++||+++|+++|+++.|++++
T Consensus 209 ~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 251 (314)
T 3d0c_A 209 VGFTSGLVNVFPQKSFALLEALEEGNQEKIWDVWEDVVPFEDL 251 (314)
T ss_dssp CEEEESGGGTCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEecHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 29
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=100.00 E-value=1.2e-51 Score=340.79 Aligned_cols=187 Identities=25% Similarity=0.263 Sum_probs=180.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ + ||+|+|+++|+++++++++|+++|||+++++||||++ ++ ++++++||++|+
T Consensus 44 GE~~~Ls~eEr~~v~~~~~~~~~g--viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~va 119 (293)
T 1w3i_A 44 GLGPSLSPEEKLENLKAVYDVTNK--IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMS--EKHLVKYFKTLC 119 (293)
T ss_dssp TTGGGSCHHHHHHHHHHHHTTCSC--EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHcCC--EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 6 9999999999999999999999999999999999999 88 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+ +|||+|||++ |..++.++++ .+++|.||+|+|.++++++..|++|+
T Consensus 120 ~a~~lPiilYn~P~~tg~~l~~~~~~~---~pnIvgiKds~gd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~G~~G~ 194 (293)
T 1w3i_A 120 EVSPHPVYLYNYPTATGKDIDAKVAKE---IGCFTGVKDTIENIIHTLDYKR--LNPNMLVYSGSDMLIATVASTGLDGN 194 (293)
T ss_dssp HHCSSCEEEEECHHHHSCCCCHHHHHH---HCCEEEEEECCSCHHHHHHHHH--HCTTSEEEECCSTTHHHHHHTTCCEE
T ss_pred hhCCCCEEEEECchhhCcCCCHHHHHh---cCCEEEEEeCCCCHHHHHHHHh--cCCCEEEEEccHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999 8999999999 9999988884 56799999999999999999999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|++++
T Consensus 195 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 234 (293)
T 1w3i_A 195 VAAGSNYLPEVTVTIKKLAMERKIDEALKLQFLHDEVIEA 234 (293)
T ss_dssp ECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EeCHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 30
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=6.3e-50 Score=336.39 Aligned_cols=189 Identities=21% Similarity=0.274 Sum_probs=178.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++. ... |+|||+|+|+++|+++++++++|+++|+|+++++||||++ ++ ++++++||++|+
T Consensus 71 GE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~IA 146 (344)
T 2hmc_A 71 GDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSV--IAAQKAHFKAIL 146 (344)
T ss_dssp GTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCC--HHHHHHHHHHHH
Confidence 89999999999999999 333 9999999999999999999999999999999999999999 87 999999999999
Q ss_pred c-cCCCCEEEEeCCCCcccccCHHHHHHH-HcCCCEEEEeeC-C---HHHHHHHHhhcCCCCeEEEecChhhHHHHh-hc
Q psy9711 80 D-NSPIPVIIYNNTFVTNIDISVDTLVKL-AHHENIRGVKDT-D---NIKLANMANQTKDLNFSVFAGSAGYLLSGL-LV 152 (198)
Q Consensus 80 ~-~~~~pi~lYn~P~~tg~~l~~~~l~~L-~~~p~i~giK~s-d---~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l-~~ 152 (198)
+ ++++||++||+| +||++++++++.+| +++|||+|||++ . ..++.+++ +..+++|.||+|.|.++++++ ..
T Consensus 147 ~aa~~lPiilYn~P-~tg~~l~~e~~~~L~a~~pnIvGiKdssgp~d~~~~~~~~-~~~~~~f~v~~G~D~~~l~~l~~~ 224 (344)
T 2hmc_A 147 SAAPEIPAVIYNSP-YYGFATRADLFFALRAEHKNLVGFKEFGGPADMRYAAENI-TSRDDEVTLMIGVDTAVVHGFVNC 224 (344)
T ss_dssp HHSTTSCEEEEEBG-GGTBCCCHHHHHHHHHHCTTEEEEEECSCHHHHHHHHHHT-SCSSSSCEEEECSGGGHHHHHHHS
T ss_pred hhCCCCcEEEEecC-ccCCCcCHHHHHHHHhcCCCEEEEEcCCCCCCHHHHHHHH-HHcCCCEEEEECcHHHHHHHHHHc
Confidence 9 899999999999 99999999999999 899999999999 6 56777776 345679999999999999999 99
Q ss_pred CCCeEEecccccchHHHHHHHHH---HHcCCHHHHHHHHHHhh----chhhc
Q psy9711 153 GCAGGINALSAVLGGPICELYDL---AKAGKWEEAMKLQHRLV----KPDVT 197 (198)
Q Consensus 153 G~~G~is~~~n~~P~~~~~l~~~---~~~gd~~~A~~l~~~~~----~l~~~ 197 (198)
|++|+||+++|++|+.++++|++ +++|| ++|+++|+++. |+++.
T Consensus 225 Ga~G~is~~anv~P~~~~~l~~a~~~~~~Gd-~~A~~l~~~l~~~~~~l~~~ 275 (344)
T 2hmc_A 225 GATGAITGIGNVLPKEVIHLCKLSQAAAKGD-ADARARALELEQALAVLSSF 275 (344)
T ss_dssp CCCEEEESGGGTSHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHTHHHHHG
T ss_pred CCCEEEeCHHHhhHHHHHHHHHhHHHHhcCc-HHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999 99999 99999999999 88764
No 31
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=100.00 E-value=2.7e-50 Score=332.05 Aligned_cols=185 Identities=23% Similarity=0.289 Sum_probs=178.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ + ||+|+|+++|+++++++++|+++|||+++++||||++ ++ ++++++||++|+
T Consensus 44 GE~~~Ls~eEr~~v~~~~~~~~~g--ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~va 119 (288)
T 2nuw_A 44 GLGPALSKDEKRQNLNALYDVTHK--LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPYYFPRLP--EKFLAKYYEEIA 119 (288)
T ss_dssp TTGGGSCHHHHHHHHHHHTTTCSC--EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCC--HHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCC--eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 6 9999999999999999999999999999999999999 88 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~ 157 (198)
+++++||++||+|.+||++++++++.+| ||+|||++ |..++.++++ .+++|.||+|+|.++++++.. ++|+
T Consensus 120 ~a~~lPiilYn~P~~tg~~l~~~~~~~L----nIvgiKdssgd~~~~~~~~~--~~~~f~v~~G~d~~~~~~l~~-~~G~ 192 (288)
T 2nuw_A 120 RISSHSLYIYNYPAATGYDIPPSILKSL----PVKGIKDTNQDLAHSLEYKL--NLPGVKVYNGSNTLIYYSLLS-LDGV 192 (288)
T ss_dssp HHCCSCEEEEECHHHHSCCCCHHHHTTT----TEEEEEECCSCHHHHHHHHH--HSTTCEEEECCGGGHHHHHTT-SSEE
T ss_pred HhcCCCEEEEECchHhCcCCCHHHHhcc----EEEEEEeCCCCHHHHHHHHh--cCCCeEEEECcHHHHHHHHHH-hCEE
Confidence 9999999999999999999999999999 99999999 9999988884 567999999999999999999 9999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 193 is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 232 (288)
T 2nuw_A 193 VASFTNFIPEVIVKQRDLIKQGKLDDALRLQELINRLADI 232 (288)
T ss_dssp ECGGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred EecHHHhCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
No 32
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=100.00 E-value=6.6e-50 Score=332.48 Aligned_cols=190 Identities=20% Similarity=0.306 Sum_probs=176.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC---cCCCCCHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY---FQKKMTEDLIYEHFI 76 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y---~~~~~~~~~i~~y~~ 76 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++|||| ++++ ++++++||+
T Consensus 53 GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s--~~~l~~~f~ 130 (309)
T 3fkr_A 53 SEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVP--EAQIFEFYA 130 (309)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCC--HHHHHHHHH
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCC--HHHHHHHHH
Confidence 8999999999999999999998 99999999999999999999999999999999999999 6887 999999999
Q ss_pred HHHccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEe-eC--CHHHHHHHHhhcCCCCe-EEEecChhh-HHHHh
Q psy9711 77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVK-DT--DNIKLANMANQTKDLNF-SVFAGSAGY-LLSGL 150 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK-~s--d~~~~~~~~~~~~~~~~-~v~~G~d~~-~~~~l 150 (198)
+|++++++||++||+|. ||++++++++.+|+ ++|||+||| ++ |..++.++++ ..+++| .+|+|+|.. +++.+
T Consensus 131 ~va~a~~lPiilYn~P~-tg~~l~~~~~~~La~~~pnIvgiK~~~~~~~~~~~~~~~-~~~~~~~~~~~G~d~~~l~~~l 208 (309)
T 3fkr_A 131 RVSDAIAIPIMVQDAPA-SGTALSAPFLARMAREIEQVAYFXIETPGAANKLRELIR-LGGDAIEGPWDGEEAITLLADL 208 (309)
T ss_dssp HHHHHCSSCEEEEECGG-GCCCCCHHHHHHHHHHSTTEEEEEECSSSHHHHHHHHHH-HHGGGCCEEEECGGGTTHHHHH
T ss_pred HHHHhcCCCEEEEeCCC-CCCCCCHHHHHHHHhhCCCEEEEECCCcchHHHHHHHHH-hcCCceeeecCCchHHHHHHHH
Confidence 99999999999999997 99999999999999 599999999 56 6788888774 344566 689999986 67999
Q ss_pred hcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 151 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 151 ~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
..|++|+|+ +|++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 209 ~~G~~G~i~--~n~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 253 (309)
T 3fkr_A 209 HAGATGAMT--GGGFPDGIRPILEAWREGRHDDAYARYQAWLPLINH 253 (309)
T ss_dssp HTTCCEECC--CSSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCcEEEE--hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999985 589999999999999999999999999999998764
No 33
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=100.00 E-value=6e-50 Score=333.37 Aligned_cols=190 Identities=15% Similarity=0.221 Sum_probs=177.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++|||| +++ ++++++||++|++
T Consensus 53 GE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~~-~~s--~~~l~~~f~~va~ 129 (313)
T 3dz1_A 53 GEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPPS-LRT--DEQITTYFRQATE 129 (313)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT-CCS--HHHHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-CCC--HHHHHHHHHHHHH
Confidence 8999999999999999999999 99999999999999999999999999999999999985 577 9999999999999
Q ss_pred cCC--CCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEee-C--CHHHHHHHHhhcCC----CCeEEEecChhhHHH-H
Q psy9711 81 NSP--IPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKD-T--DNIKLANMANQTKD----LNFSVFAGSAGYLLS-G 149 (198)
Q Consensus 81 ~~~--~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~-s--d~~~~~~~~~~~~~----~~~~v~~G~d~~~~~-~ 149 (198)
+++ +||++||+|.+||++++++++.+|+ ++|||+|||+ + |..++.++++ ..+ ++|.||+|+|.++++ +
T Consensus 130 a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiKd~~~~~~~~~~~~~~-~~~~~~~~~f~v~~G~d~~~l~~~ 208 (313)
T 3dz1_A 130 AIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDSASCVMLKHEDWPGLEKITTLRG-FQKDGSLRPLSILCGNGGLFLDFE 208 (313)
T ss_dssp HHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHCSSEEEEEECCSSCHHHHHHHHH-HHHHTSSCCCEEEECGGGTTHHHH
T ss_pred hCCCCCcEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHH-hcCccCCCCeEEEeCCcHHHHHHH
Confidence 998 9999999999999999999999999 5999999998 4 8888888774 333 789999999998777 5
Q ss_pred hhcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 150 LLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 150 l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+..|++|+|++ |++|+.++++|+++++||+++|+++|+++.|+++.
T Consensus 209 l~~G~~G~i~~--~~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~~ 254 (313)
T 3dz1_A 209 MERGADGAMTG--YCFPDMLVDVVKLSKAGQRDLAHNLFDAHLPLIRY 254 (313)
T ss_dssp HHHTCCEEEEC--CSCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCcEEEeC--cccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999985 68999999999999999999999999999998764
No 34
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=100.00 E-value=3.6e-49 Score=329.08 Aligned_cols=187 Identities=21% Similarity=0.238 Sum_probs=175.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+ +|+++++++++|+++|||++++++|||++++ ++++++||++|+
T Consensus 57 GE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s--~~~l~~~f~~va 133 (316)
T 3e96_A 57 SEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVT--AGGVYAYFRDII 133 (316)
T ss_dssp GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCC--HHHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 8999999997 9999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCC-CeE-EEecChhh-HHHHhhcCC
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDL-NFS-VFAGSAGY-LLSGLLVGC 154 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~-~~~-v~~G~d~~-~~~~l~~G~ 154 (198)
+++++||++||+ |.+++++++.+|+++|||+|||++ |+.++.++++ ..++ +|. +|+|.|+. +...+..|+
T Consensus 134 ~a~~lPiilYn~----g~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~-~~~~~~f~~v~~G~d~~~~~~~l~~G~ 208 (316)
T 3e96_A 134 EALDFPSLVYFK----DPEISDRVLVDLAPLQNLVGVKYAINDLPRFAKVVR-SIPEEHQIAWICGTAEKWAPFFWHAGA 208 (316)
T ss_dssp HHHTSCEEEEEC----CTTSCTHHHHHHTTCTTEEEEEECCCCHHHHHHHHT-TSCGGGCCEEEETTCTTTHHHHHHHTC
T ss_pred HhCCCCEEEEeC----CCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHH-hcCCCCceEEEeCChHHHHHHHHHCCC
Confidence 999999999996 779999999999999999999999 9999998884 4455 898 99999876 445679999
Q ss_pred CeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711 155 AGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV 196 (198)
Q Consensus 155 ~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~ 196 (198)
+|++|+++|++|+.++++|+++++||+++|+++|+++.|+.+
T Consensus 209 ~G~is~~an~~P~~~~~l~~a~~~Gd~~~A~~l~~~l~~l~~ 250 (316)
T 3e96_A 209 KGFTSGLVNLLPQKAVEMLEALRNNDNDAVWRIWEDIVPFED 250 (316)
T ss_dssp CEEEESGGGTCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEechhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999998753
No 35
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2.5e-49 Score=327.05 Aligned_cols=183 Identities=22% Similarity=0.349 Sum_probs=172.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISV 78 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i 78 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|+|+++++||||++ ++ ++++++||++|
T Consensus 48 GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s--~~~l~~~f~~v 125 (294)
T 3b4u_A 48 GEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVS--DDGLFAWFSAV 125 (294)
T ss_dssp TTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCC--HHHHHHHHHHH
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCC--HHHHHHHHHHH
Confidence 8999999999999999999998 8999999999999999999999999999999999999999 88 99999999999
Q ss_pred HccC---CCCEEEEeCCCCcccccCHHHHHHHH-cCCC-EEEEeeC--CHHHHHHHHhhcCCCCeEEEecChhhHHHHhh
Q psy9711 79 ADNS---PIPVIIYNNTFVTNIDISVDTLVKLA-HHEN-IRGVKDT--DNIKLANMANQTKDLNFSVFAGSAGYLLSGLL 151 (198)
Q Consensus 79 ~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~-i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~ 151 (198)
++++ ++||++||+|.+||++++++++.+|+ ++|| |+|||++ |..++.++++ ..+ +|.||+|+|.++++++.
T Consensus 126 a~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds~gd~~~~~~~~~-~~~-~f~v~~G~d~~~l~~l~ 203 (294)
T 3b4u_A 126 FSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLK-EHG-DLAILIGDERDLARGVR 203 (294)
T ss_dssp HHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEECCCCHHHHHHHHH-HHT-TSEEEECCHHHHHHHHH
T ss_pred HHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHH-hCC-CeEEEEccHHHHHHHHH
Confidence 9999 99999999999999999999999999 8999 9999999 8999988874 334 89999999999999999
Q ss_pred cCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 152 VGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 152 ~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
.|++|++|+++|++|+.++++|+ + +++|+++.|+++.
T Consensus 204 ~G~~G~is~~~n~~P~~~~~l~~---~------~~l~~~l~~l~~~ 240 (294)
T 3b4u_A 204 LGGQGAISGVANFLTQEVRAMAV---D------GKDDPRIVDLVVE 240 (294)
T ss_dssp TTCCEEEESGGGTCHHHHHHHHT---T------CCCCHHHHHHHHH
T ss_pred CCCCEEEeCHHHhCHHHHHHHHH---H------HHHHHHHHHHHHH
Confidence 99999999999999999999998 1 6777777777653
No 36
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=100.00 E-value=1.2e-46 Score=316.51 Aligned_cols=182 Identities=25% Similarity=0.312 Sum_probs=166.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
||+++||.+||+++++.+++++ |+|||+|+|+++|+++++++++|+++|||+++++||||++++ ++++++||++|+
T Consensus 104 GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~s--q~gl~~hf~~IA 181 (360)
T 4dpp_A 104 GEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTS--IEGLIAHFQSVL 181 (360)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCC--HHHHHHHHHTTG
T ss_pred cChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--HHHHHHHHHHHH
Confidence 8999999999999999999998 899999999999999999999999999999999999999998 999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHHH-HhhcCCCeE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLLS-GLLVGCAGG 157 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~~-~l~~G~~G~ 157 (198)
++ +||++||+|++||++++++++.+|+++|||+|||++ .-.++.+. .+++|.||+|.|.++++ .+..|++|+
T Consensus 182 ~a--~PiilYNiP~rTg~~ls~e~l~~La~~pnIvGIKdssgd~~i~~~----~~~~f~v~sG~D~~~l~~~l~~Ga~G~ 255 (360)
T 4dpp_A 182 HM--GPTIIYNVPGRTGQDIPPRAIFKLSQNPNLAGVKECVGNKRVEEY----TENGVVVWSGNDDECHDSRWDYGATGV 255 (360)
T ss_dssp GG--SCEEEEECHHHHSCCCCHHHHHHHTTSTTEEEEEECSCHHHHHHH----HHTTCCEEECCGGGHHHHHHHSCCCEE
T ss_pred Hh--CCEEEEeCCcccCCCCCHHHHHHHhcCCCEEEEEeCCCcHHHHHh----hCCCEEEEeCChHHHHHHHHHcCCCEE
Confidence 97 699999999999999999999999999999999999 33444332 24789999999988765 589999999
Q ss_pred EecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhhc
Q psy9711 158 INALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDVT 197 (198)
Q Consensus 158 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~~ 197 (198)
+|+++|++|+.++++|+ +|+ |+++|+++.|+++.
T Consensus 256 Is~~aNv~P~~~~~l~~---aG~---a~~l~~~l~pl~~~ 289 (360)
T 4dpp_A 256 ISVTSNLVPGLMRKLMF---EGR---NSSLNSKLLPLMAW 289 (360)
T ss_dssp EESGGGTCHHHHHHHHH---SCC---CHHHHHHHHHHHHH
T ss_pred EccchhhcHHHHHHHHH---hhh---HHHHHHHHHHHHHH
Confidence 99999999999999987 464 67899999998864
No 37
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati YORK structural genomics research consortium; 2.50A {Sinorhizobium meliloti}
Probab=99.29 E-value=1.4e-10 Score=94.45 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=145.0
Q ss_pred cCCCCHHHHHHHHHHHHHhc----CCeEEEeCCCCc--------HHHH----HHHHHHHHhcCCCEEEEcCCCCcCCCCC
Q psy9711 4 SFKSTEEEKLKIISTLRQET----KKTIIAGTYCES--------TRAT----IDLTQKAAKAGANAALILCPYYFQKKMT 67 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~----~~pvi~gv~~~~--------~~~~----i~~a~~a~~~Gad~v~~~~P~y~~~~~~ 67 (198)
++-|+...-+++++....++ +..|.+|+|+.. .++. .|+....++.|+..+++.+-...+...+
T Consensus 88 GMGLDW~~a~ELIrRs~aeA~~~pg~~ia~G~GTDqL~~~~~~~l~~V~~AY~EQ~~~Ve~~G~~~ILMASRaLA~~A~~ 167 (396)
T 4dnh_A 88 GMGLGWPEARELIRRSLAEARGRPDALIACGAGTDHLAPGPDVSIDDILAAYESQIEAIEAEGGRIILMASRALAAAAKG 167 (396)
T ss_dssp TTTBCHHHHHHHHHHHHHHHHTSSSCCEEEEECCTTSCCCTTCCHHHHHHHHHHHHHHHHHTTCCEEECCCHHHHHHCCS
T ss_pred cCCCCcHHHHHHHHHHHHHHhcCCCCeeeeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEehhHHHHHHhCC
Confidence 45678888999999988877 456888988533 3333 5677888999999998887666543345
Q ss_pred HHHHHHHHHHHHccCCCCEEEEeC-----CCCcccc------cCHHHHHHHH-cC-CCEEEEeeC--CHHHHHHHHhhcC
Q psy9711 68 EDLIYEHFISVADNSPIPVIIYNN-----TFVTNID------ISVDTLVKLA-HH-ENIRGVKDT--DNIKLANMANQTK 132 (198)
Q Consensus 68 ~~~i~~y~~~i~~~~~~pi~lYn~-----P~~tg~~------l~~~~l~~L~-~~-p~i~giK~s--d~~~~~~~~~~~~ 132 (198)
+++..+-|..|.++++-|||++.. |...|+. -..+++.+|. ++ ..|-|||.| |..+-..++ +..
T Consensus 168 pdDY~~VY~~vL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~lI~~~~~kVDGIKiSLLDa~~Ei~lR-rrL 246 (396)
T 4dnh_A 168 PEDYIRVYDRVLSQVKEPVIIHWLGEMFDPALEGYWGNADHMAAMKTCLDVLEAHAAKVDGIKISLLSKEKEIVMR-RQL 246 (396)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEEECTTTCGGGTTTTSCSSHHHHHHHHHHHHHHTGGGEEEEEEESCCHHHHHHHH-TSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecccccChhhccccCCCCHHHHHHHHHHHHHhChhhcCceEEeeeccHhHHHHH-HhC
Confidence 999999999999999999999985 6666652 3356777777 56 589999999 988877777 457
Q ss_pred CCCeEEEecChhhHHHHhhcC-----CCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711 133 DLNFSVFAGSAGYLLSGLLVG-----CAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV 196 (198)
Q Consensus 133 ~~~~~v~~G~d~~~~~~l~~G-----~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~ 196 (198)
++++++|+|+|..+.+ +..| .+.....+..+.|... .-..++.+||.+..+++.+.-.||.+
T Consensus 247 P~gVrmYTGDDFnYpE-LI~GD~~g~ShALLGIFdaIaPaAs-~Al~aLd~Gd~~~f~~iL~PTvpLsR 313 (396)
T 4dnh_A 247 PKGVRMYTGDDFNYAE-LIAGDEEGHSDALLGIFDAIAPVAS-AALEALGSGRNGEFFELLEPTVPLSR 313 (396)
T ss_dssp CTTCEEEECCTTTHHH-HHHCCSSCCCEEEESHHHHTHHHHH-HHHHHHHTTCHHHHHHHHTTHHHHHH
T ss_pred CCcceeecCCCCCcHH-HhcCCCCCccHHHHhhhhhccHHHH-HHHHHHhCCCHHHHHHHhcCcchhhh
Confidence 8899999999987755 4444 4555666666677655 56678899999999998877666643
No 38
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=97.63 E-value=0.012 Score=47.82 Aligned_cols=162 Identities=9% Similarity=-0.001 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCC-EEEEc--CCCCcC---CCCCHHHHHHHHHHHHc
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGAN-AALIL--CPYYFQ---KKMTEDLIYEHFISVAD 80 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad-~v~~~--~P~y~~---~~~~~~~i~~y~~~i~~ 80 (198)
.++..+.++...+.. +.|+++++++.+.++..+.++.+++.|+| ++-+- .|..-. ...+.+.+.+..+.|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~ 155 (311)
T 1jub_A 76 FDYYLDYVLKNQKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFT 155 (311)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHH
Confidence 444444444443333 68999999999999999999999999999 88774 355411 00147888899999988
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHH---HHcCCCEEEEeeC-----------------------------------CHH
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVK---LAHHENIRGVKDT-----------------------------------DNI 122 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~---L~~~p~i~giK~s-----------------------------------d~~ 122 (198)
++++||++=-.|. ++.+.+.+ .++--.+.|+.-+ +..
T Consensus 156 ~~~~Pv~vKi~~~-----~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~ 230 (311)
T 1jub_A 156 FFTKPLGVKLPPY-----FDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALA 230 (311)
T ss_dssp TCCSCEEEEECCC-----CSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHH
T ss_pred hcCCCEEEEECCC-----CCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHH
Confidence 8899999865443 34444433 3322234443221 012
Q ss_pred HHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 123 KLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 123 ~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
.+.++. +..++++.|+...+ ......+..|++++..+.+.+. |.++.++.+.+
T Consensus 231 ~i~~v~-~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~l 289 (311)
T 1jub_A 231 NVRAFY-TRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKEL 289 (311)
T ss_dssp HHHHHH-TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHHH
Confidence 223333 33334666654322 2456667899999999998775 87776665543
No 39
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=97.52 E-value=0.00028 Score=56.59 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=85.4
Q ss_pred CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN---SPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~ 93 (198)
++|+++++.+.+ ++...+.++.+.+.|++.+.+.. .+..++ .+++++..+++.+. .++|+++...|.
T Consensus 79 ~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l-~~~~~~--~~~~~~~~~~v~~~~~~~g~~viv~~~~~ 155 (273)
T 2qjg_A 79 DVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHV-NVGSDE--DWEAYRDLGMIAETCEYWGMPLIAMMYPR 155 (273)
T ss_dssp CCEEEEECEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEE-EETSTT--HHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred CCCEEEEEcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEE-ecCCCC--HHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 678888876543 12236778889999999994421 112233 77777777776655 489999876442
Q ss_pred Ccccc----cCHHHHHHH---H-cC-CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh-h-------HHHHhhcCCC
Q psy9711 94 VTNID----ISVDTLVKL---A-HH-ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG-Y-------LLSGLLVGCA 155 (198)
Q Consensus 94 ~tg~~----l~~~~l~~L---~-~~-p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~-~-------~~~~l~~G~~ 155 (198)
|.. ++++.+.++ + +. ..++++..+ ++..+.++.. ..+-.+....|... . +...+..|++
T Consensus 156 --G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~~~~~~l~~i~~-~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~ 232 (273)
T 2qjg_A 156 --GKHIQNERDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVK-GCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAA 232 (273)
T ss_dssp --STTCSCTTCHHHHHHHHHHHHHTTCSEEEECCCSSHHHHHHHHH-HCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCS
T ss_pred --CcccCCCCCHhHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 333 466555444 3 22 567777766 8888888763 34445655666542 2 5556689999
Q ss_pred eEEeccc
Q psy9711 156 GGINALS 162 (198)
Q Consensus 156 G~is~~~ 162 (198)
|+..+.+
T Consensus 233 gv~vg~~ 239 (273)
T 2qjg_A 233 GVAVGRN 239 (273)
T ss_dssp EEECCHH
T ss_pred EEEeeHH
Confidence 9987765
No 40
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=97.45 E-value=0.0026 Score=53.36 Aligned_cols=142 Identities=13% Similarity=0.165 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.+|.++..+.++.+.+..+.|+.++++... .+.++.+.++|+|.+.+-.+. .. ++.+.+..+.+.+..++|
T Consensus 77 ~~s~e~~~~~I~~vk~~~~~pvga~ig~~~----~e~a~~l~eaGad~I~ld~a~---G~--~~~~~~~i~~i~~~~~~~ 147 (361)
T 3khj_A 77 NMDMESQVNEVLKVKNSGGLRVGAAIGVNE----IERAKLLVEAGVDVIVLDSAH---GH--SLNIIRTLKEIKSKMNID 147 (361)
T ss_dssp SSCHHHHHHHHHHHHHTTCCCCEEEECTTC----HHHHHHHHHTTCSEEEECCSC---CS--BHHHHHHHHHHHHHCCCE
T ss_pred CCCHHHHHHHHHHHHhccCceEEEEeCCCH----HHHHHHHHHcCcCeEEEeCCC---CC--cHHHHHHHHHHHHhcCCc
Confidence 578999999998887665788888887654 788888999999988875443 22 566777788888777999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--h
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--A 143 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d 143 (198)
|++-| ..+++...++.+. .+-+||.+ ++..+.++.+.....++.|+. |. .
T Consensus 148 Vivg~-------v~t~e~A~~l~~a-GaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~ 219 (361)
T 3khj_A 148 VIVGN-------VVTEEATKELIEN-GADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYS 219 (361)
T ss_dssp EEEEE-------ECSHHHHHHHHHT-TCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSH
T ss_pred EEEcc-------CCCHHHHHHHHHc-CcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCH
Confidence 99844 3567777777754 23333321 122222221100011344443 43 2
Q ss_pred hhHHHHhhcCCCeEEeccccc
Q psy9711 144 GYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 144 ~~~~~~l~~G~~G~is~~~n~ 164 (198)
..+..++.+|++|++.|.+.+
T Consensus 220 ~di~kala~GAd~V~vGs~~~ 240 (361)
T 3khj_A 220 GDIGKALAVGASSVMIGSILA 240 (361)
T ss_dssp HHHHHHHHHTCSEEEESTTTT
T ss_pred HHHHHHHHcCCCEEEEChhhh
Confidence 457778999999999887644
No 41
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=97.02 E-value=0.018 Score=46.92 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=94.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCC---EEEEc--CCCCcC---CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGAN---AALIL--CPYYFQ---KKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad---~v~~~--~P~y~~---~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t 95 (198)
+.|+++++++.+.++..+.++.+++.|+| ++-+- .|..-. ...+.+.+.+..+.|.+++++||++=-.|.
T Consensus 93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~-- 170 (314)
T 2e6f_A 93 KKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY-- 170 (314)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC--
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC--
Confidence 78999999999999999999999999999 77764 354311 001477888888998888899999855443
Q ss_pred ccccCHHHHHHHH---cCCC-EEEEeeC-----------------------------------CHHHHHHHHhhcCCCCe
Q psy9711 96 NIDISVDTLVKLA---HHEN-IRGVKDT-----------------------------------DNIKLANMANQTKDLNF 136 (198)
Q Consensus 96 g~~l~~~~l~~L~---~~p~-i~giK~s-----------------------------------d~~~~~~~~~~~~~~~~ 136 (198)
++.+.+.+++ +--. +.++.-+ ....+.++. +.. +++
T Consensus 171 ---~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~-~~~-~~i 245 (314)
T 2e6f_A 171 ---FDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFY-RRC-PDK 245 (314)
T ss_dssp ---CCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHH-HHC-TTS
T ss_pred ---CCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHH-Hhc-CCC
Confidence 4555554443 2234 6665321 012233333 333 456
Q ss_pred EEEecCh----hhHHHHhhcCCCeEEeccccc--chHHHHHHHHH
Q psy9711 137 SVFAGSA----GYLLSGLLVGCAGGINALSAV--LGGPICELYDL 175 (198)
Q Consensus 137 ~v~~G~d----~~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~~ 175 (198)
.|+...+ ......+..|++++..+.+.+ -|.++.++.+.
T Consensus 246 pvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~ 290 (314)
T 2e6f_A 246 LVFGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDE 290 (314)
T ss_dssp EEEEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHH
Confidence 6653222 245667789999999998876 47666666543
No 42
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=96.94 E-value=0.049 Score=44.04 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=96.8
Q ss_pred CCCHHHHHH-HHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHh-cCCCEEEEc--CCCCcC----CCCCHHHHHHHHH
Q psy9711 6 KSTEEEKLK-IISTLRQET-KKTIIAGTYCESTRATIDLTQKAAK-AGANAALIL--CPYYFQ----KKMTEDLIYEHFI 76 (198)
Q Consensus 6 ~Lt~~Er~~-l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~-~Gad~v~~~--~P~y~~----~~~~~~~i~~y~~ 76 (198)
+.+.++..+ .++.+.+.. +.|+++.++..+.++..+.++.+++ .|+|++-+. .|...+ ...+++.+.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~ 157 (311)
T 1ep3_A 78 NPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVK 157 (311)
T ss_dssp BCCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHH
Confidence 345555433 455554435 8899999998889999999999998 999988663 444211 0012677788888
Q ss_pred HHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEee-------------------------C---C----HHHH
Q psy9711 77 SVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKD-------------------------T---D----NIKL 124 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~-------------------------s---d----~~~~ 124 (198)
.+.+.++.||++--.|..+ =..+...++.+. .+.++.. + + ...+
T Consensus 158 ~v~~~~~~pv~vk~~~~~~---~~~~~a~~l~~~-G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i 233 (311)
T 1ep3_A 158 ACKAVSKVPLYVKLSPNVT---DIVPIAKAVEAA-GADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLI 233 (311)
T ss_dssp HHHHHCSSCEEEEECSCSS---CSHHHHHHHHHT-TCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCChH---HHHHHHHHHHHc-CCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHH
Confidence 8888889999986655432 123444555443 2223222 1 1 1223
Q ss_pred HHHHhhcCCCCeEEEe--cC-h-hhHHHHhhcCCCeEEeccccc-chHHHHHHHH
Q psy9711 125 ANMANQTKDLNFSVFA--GS-A-GYLLSGLLVGCAGGINALSAV-LGGPICELYD 174 (198)
Q Consensus 125 ~~~~~~~~~~~~~v~~--G~-d-~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~ 174 (198)
.++. +.. ++.|+. |. + ......+..|++++..+.+.+ -|+.+.++.+
T Consensus 234 ~~i~-~~~--~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~ 285 (311)
T 1ep3_A 234 HQVA-QDV--DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIID 285 (311)
T ss_dssp HHHH-TTC--SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHH
T ss_pred HHHH-Hhc--CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHH
Confidence 3333 222 344442 33 2 346667788999999888754 3555555544
No 43
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=96.80 E-value=0.11 Score=41.72 Aligned_cols=146 Identities=14% Similarity=0.058 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 94 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~ 94 (198)
.++.+.+.+++||+..-.-.+.. ++..+..+|||++++..... + ++++.++++. +...++-+++==.
T Consensus 111 ~L~~ir~~v~lPVl~Kdfi~d~~----qi~ea~~~GAD~VlLi~a~L---~--~~~l~~l~~~-a~~lGl~~lvevh--- 177 (272)
T 3tsm_A 111 FLTAARQACSLPALRKDFLFDPY----QVYEARSWGADCILIIMASV---D--DDLAKELEDT-AFALGMDALIEVH--- 177 (272)
T ss_dssp HHHHHHHTSSSCEEEESCCCSTH----HHHHHHHTTCSEEEEETTTS---C--HHHHHHHHHH-HHHTTCEEEEEEC---
T ss_pred HHHHHHHhcCCCEEECCccCCHH----HHHHHHHcCCCEEEEccccc---C--HHHHHHHHHH-HHHcCCeEEEEeC---
Confidence 44555555599998764433333 35567799999999997643 3 6666665555 4456776664221
Q ss_pred cccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEeccc
Q psy9711 95 TNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 95 tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~ 162 (198)
+.+.+.+..+ -+.++|+=.. |+....++.. ..+++..+.+... +........|++|++-|.+
T Consensus 178 -----~~eEl~~A~~~ga~iIGinnr~l~t~~~dl~~~~~L~~-~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~a 251 (272)
T 3tsm_A 178 -----DEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAK-MAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGES 251 (272)
T ss_dssp -----SHHHHHHHTTSCCSEEEEECBCTTTCCBCTHHHHHHHH-HSCTTSEEEEESSCCSHHHHHHHHTTTCCEEEECHH
T ss_pred -----CHHHHHHHHhcCCCEEEECCCCCccCCCChHHHHHHHH-hCCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 3556666555 4689999743 6677777764 3444555554332 2455667889999999987
Q ss_pred ccchHHHHHHHHHHHcC
Q psy9711 163 AVLGGPICELYDLAKAG 179 (198)
Q Consensus 163 n~~P~~~~~l~~~~~~g 179 (198)
-+-++-..+..+.+..|
T Consensus 252 lmr~~d~~~~~~~l~~g 268 (272)
T 3tsm_A 252 LMRQHDVAAATRALLTG 268 (272)
T ss_dssp HHTSSCHHHHHHHHHHC
T ss_pred HcCCcCHHHHHHHHHhc
Confidence 55443333333444334
No 44
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=96.78 E-value=0.027 Score=47.20 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PI 84 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~ 84 (198)
++|.++..+.++.+.+..+.+|-++++.. .+..+.++.+.++|+|.+.+-... .. ++.+.+..+.+.+.. ++
T Consensus 78 ~~s~e~~~~~i~~vk~~~~l~vga~vg~~--~~~~~~~~~lieaGvd~I~idta~---G~--~~~~~~~I~~ik~~~p~v 150 (366)
T 4fo4_A 78 NMSIEQQAAQVHQVKISGGLRVGAAVGAA--PGNEERVKALVEAGVDVLLIDSSH---GH--SEGVLQRIRETRAAYPHL 150 (366)
T ss_dssp SSCHHHHHHHHHHHHTTTSCCCEEECCSC--TTCHHHHHHHHHTTCSEEEEECSC---TT--SHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHhcCceeEEEEeccC--hhHHHHHHHHHhCCCCEEEEeCCC---CC--CHHHHHHHHHHHHhcCCC
Confidence 48999999999988765455665655532 356778888999999998874332 12 456777888888777 68
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS-- 142 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~-- 142 (198)
||+.-| ..+++...++.+. .+-+||.. +...+.++.+.....++.|+. |.
T Consensus 151 ~Vi~G~-------v~t~e~A~~a~~a-GAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~ 222 (366)
T 4fo4_A 151 EIIGGN-------VATAEGARALIEA-GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRF 222 (366)
T ss_dssp EEEEEE-------ECSHHHHHHHHHH-TCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCS
T ss_pred ceEeee-------eCCHHHHHHHHHc-CCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCC
Confidence 888744 4577888777753 23333331 112222222111112345554 44
Q ss_pred hhhHHHHhhcCCCeEEeccccc
Q psy9711 143 AGYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 143 d~~~~~~l~~G~~G~is~~~n~ 164 (198)
...+..++.+|++|++.|..-+
T Consensus 223 ~~di~kala~GAd~V~vGs~f~ 244 (366)
T 4fo4_A 223 SGDISKAIAAGASCVMVGSMFA 244 (366)
T ss_dssp HHHHHHHHHTTCSEEEESTTTT
T ss_pred HHHHHHHHHcCCCEEEEChHhh
Confidence 2467788999999998887643
No 45
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=96.77 E-value=0.019 Score=45.77 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHhc---CCe--EEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 7 STEEEKLKIISTLRQET---KKT--IIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~p--vi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
.+.+|..+-++.++++. ++| |++.+.. ...+++++.++.++++|||++++-.+ ++ .++
T Consensus 124 ~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~----~~--~~~-- 195 (255)
T 2qiw_A 124 REAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL----ST--AEQ-- 195 (255)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC----CS--HHH--
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC----CC--HHH--
Confidence 46788888999998885 466 7776653 24799999999999999999998543 33 443
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
.++++++.++|+.+--.|......++.+.+.+|
T Consensus 196 --~~~i~~~~~~P~n~~~~~~~~~p~~~~~eL~~l 228 (255)
T 2qiw_A 196 --VERLVDAVSVPVNITAHPVDGHGAGDLATLAGL 228 (255)
T ss_dssp --HHHHHTTCSSCBEEECBTTTBBTTBCHHHHHHT
T ss_pred --HHHHHHhCCCCEEEEecCCCCCCCCCHHHHHHc
Confidence 466777778888554334321134677777766
No 46
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=96.67 E-value=0.031 Score=45.67 Aligned_cols=90 Identities=22% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 6 KSTEEEKLKIISTLRQET-KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
..+.+|..+-++.++++. +..|++-+-+ ...+++|++++.++++|||++++-.+ ++ .+ .+++++++
T Consensus 140 l~~~~e~~~rI~Aa~~A~~~~~I~ARtda~~~~g~~~ai~Ra~ay~eAGAD~i~~e~~----~~--~~----~~~~i~~~ 209 (305)
T 3ih1_A 140 LVTTEELVQKIKAIKEVAPSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEAL----QS--EE----EFRLFNSK 209 (305)
T ss_dssp BCCHHHHHHHHHHHHHHCTTSEEEEEECCHHHHCHHHHHHHHHHHHHHTCSEEEETTC----CS--HH----HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCCeEEEEeeccccccCHHHHHHHHHHHHHcCCCEEEEcCC----CC--HH----HHHHHHHH
Confidence 467789999999999886 6677766644 24789999999999999999999654 33 44 45667777
Q ss_pred CCCCEEEEeCCCCcc--cccCHHHHHHH
Q psy9711 82 SPIPVIIYNNTFVTN--IDISVDTLVKL 107 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg--~~l~~~~l~~L 107 (198)
+++|++. |.-. .| ..++.+.+.+|
T Consensus 210 ~~~P~~~-n~~~-~g~tp~~~~~eL~~l 235 (305)
T 3ih1_A 210 VNAPLLA-NMTE-FGKTPYYSAEEFANM 235 (305)
T ss_dssp SCSCBEE-ECCT-TSSSCCCCHHHHHHT
T ss_pred cCCCEEE-eecC-CCCCCCCCHHHHHHc
Confidence 7899953 4311 11 13565555555
No 47
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=96.60 E-value=0.19 Score=39.86 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRAT---IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~---i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
+|.+.-.++++.+.+.. ++|+++ .+-.+.-.. -+.++.+.++|+|++++. .. ..+++..+.+. ++..
T Consensus 76 ~~~~~~~~~v~~ir~~~~~~Pi~~-m~y~n~v~~~g~~~f~~~~~~aG~dgvii~-----dl--~~ee~~~~~~~-~~~~ 146 (262)
T 2ekc_A 76 IRFEDVLELSETLRKEFPDIPFLL-MTYYNPIFRIGLEKFCRLSREKGIDGFIVP-----DL--PPEEAEELKAV-MKKY 146 (262)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCEEE-ECCHHHHHHHCHHHHHHHHHHTTCCEEECT-----TC--CHHHHHHHHHH-HHHT
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEE-EecCcHHHHhhHHHHHHHHHHcCCCEEEEC-----CC--CHHHHHHHHHH-HHHc
Confidence 34555667788888877 889876 223333222 477888999999998883 12 25666555544 4566
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHc-CCC---------EEEEeeC-C---H-HHHHHHHhhcCCCCeEEEecCh-hhH
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAH-HEN---------IRGVKDT-D---N-IKLANMANQTKDLNFSVFAGSA-GYL 146 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~---------i~giK~s-d---~-~~~~~~~~~~~~~~~~v~~G~d-~~~ 146 (198)
++.++..-.|. -+.+.+.++++ -.. +.|.... + . ..+.++. +..+-.+.+=.|-. ..-
T Consensus 147 gl~~i~l~~p~-----t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr-~~~~~pv~vG~GI~t~e~ 220 (262)
T 2ekc_A 147 VLSFVPLGAPT-----STRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYR-ELCDKPVVVGFGVSKKEH 220 (262)
T ss_dssp TCEECCEECTT-----CCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHH-HHCCSCEEEESSCCSHHH
T ss_pred CCcEEEEeCCC-----CCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHH-hhcCCCEEEeCCCCCHHH
Confidence 76654433443 34566677663 232 2233322 2 1 2333333 33333344433433 233
Q ss_pred HHHhhcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy9711 147 LSGLLVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRL 191 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~ 191 (198)
...+..|+||++.|.+ +... ..+++.++++++.+.+
T Consensus 221 ~~~~~~gADgvIVGSa-----i~~~----~~~~~~~~~~~~~~~~ 256 (262)
T 2ekc_A 221 AREIGSFADGVVVGSA-----LVKL----AGQKKIEDLGNLVKEL 256 (262)
T ss_dssp HHHHHTTSSEEEECHH-----HHHH----HHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEECHH-----HHhh----hhhhhHHHHHHHHHHH
Confidence 3447889999999975 2222 2234556666555544
No 48
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=96.59 E-value=0.11 Score=43.21 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHH---hcCCCEEEEc--CCCCc---CCCCCHHHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAA---KAGANAALIL--CPYYF---QKKMTEDLIYEHFISV 78 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~---~~Gad~v~~~--~P~y~---~~~~~~~~i~~y~~~i 78 (198)
...+...+-++...+..+.||++++.+.+.++-++.++.++ +.|+|++-+- .|..- ....+++.+.+..+.+
T Consensus 109 ~G~~~~~~~l~~~~~~~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av 188 (354)
T 4ef8_A 109 NGFDFYLAYAAEQHDYGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAV 188 (354)
T ss_dssp CCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHH
Confidence 34444444443222111789999998889999999999988 6799998764 44421 1111378899999999
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHHH----cCCCEEEEe-----------e-----------------C-------
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HHENIRGVK-----------D-----------------T------- 119 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~~p~i~giK-----------~-----------------s------- 119 (198)
.+++++||.+=-.|.. +.+.+.+++ +.+.+.||- + |
T Consensus 189 ~~~~~~PV~vKi~p~~-----d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~ 263 (354)
T 4ef8_A 189 SEVYPHSFGVKMPPYF-----DFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPT 263 (354)
T ss_dssp HHHCCSCEEEEECCCC-----SHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHH
T ss_pred HHhhCCCeEEEecCCC-----CHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchH
Confidence 9999999999887753 444454444 333244442 1 1
Q ss_pred CHHHHHHHHhhcCCCCeEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 120 DNIKLANMANQTKDLNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 120 d~~~~~~~~~~~~~~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
++..+.++. +. .+++.|+. | .. ......+..|++++..+.+.+. |.++.++.+.+
T Consensus 264 a~~~i~~v~-~~-~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l 324 (354)
T 4ef8_A 264 ALANINAFY-RR-CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSEL 324 (354)
T ss_dssp HHHHHHHHH-HH-CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHH-Hh-CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHH
Confidence 112233333 23 34555543 3 21 2456677899999999988664 66666665544
No 49
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=96.51 E-value=0.084 Score=42.90 Aligned_cols=162 Identities=9% Similarity=0.041 Sum_probs=92.3
Q ss_pred CCeEEEeCCCCcH-------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCEST-------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~-------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~ 93 (198)
++|+|+.+++.+. +....-++.|.+.|||++.+.-- +.... +.+.++-++++.+.+ ++|+++-. |.
T Consensus 105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~-~Gs~~--~~~~l~~i~~v~~~a~~~GlpvIie~-~~ 180 (295)
T 3glc_A 105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVY-IGSEY--EHQSIKNIIQLVDAGMKVGMPTMAVT-GV 180 (295)
T ss_dssp CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEEC-TTSTT--HHHHHHHHHHHHHHHHTTTCCEEEEE-CC
T ss_pred CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEE-CCCCc--HHHHHHHHHHHHHHHHHcCCEEEEEC-CC
Confidence 8899998865441 11123467778999999888522 12233 677777666666554 79999843 32
Q ss_pred CcccccCHHHHH---HHH-cC-CCEEEEeeCCHHHHHHHHhhcCCCCeEEEecCh--h-----hHHHHhhcCCCeEEecc
Q psy9711 94 VTNIDISVDTLV---KLA-HH-ENIRGVKDTDNIKLANMANQTKDLNFSVFAGSA--G-----YLLSGLLVGCAGGINAL 161 (198)
Q Consensus 94 ~tg~~l~~~~l~---~L~-~~-p~i~giK~sd~~~~~~~~~~~~~~~~~v~~G~d--~-----~~~~~l~~G~~G~is~~ 161 (198)
......+++.+. +++ +. ..++..+.+ ...+.++.. ..+-.+.+..|.. . ++..++..|++|++.|-
T Consensus 181 G~~~~~d~e~i~~aariA~elGAD~VKt~~t-~e~~~~vv~-~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGR 258 (295)
T 3glc_A 181 GKDMVRDQRYFSLATRIAAEMGAQIIKTYYV-EKGFERIVA-GCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGR 258 (295)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCSEEEEECC-TTTHHHHHH-TCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESH
T ss_pred CCccCCCHHHHHHHHHHHHHhCCCEEEeCCC-HHHHHHHHH-hCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHH
Confidence 112234566544 666 44 466666655 223445542 2333443334422 1 34567789999999887
Q ss_pred ccc---chHHHH-HHHHHHHcC-CHHHHHHHHHHh
Q psy9711 162 SAV---LGGPIC-ELYDLAKAG-KWEEAMKLQHRL 191 (198)
Q Consensus 162 ~n~---~P~~~~-~l~~~~~~g-d~~~A~~l~~~~ 191 (198)
+-+ -|..+. ++.+.+.++ ..++|.++++.+
T Consensus 259 nI~q~~dp~~~~~al~~ivh~~~s~~eA~~~~~~~ 293 (295)
T 3glc_A 259 NIFQSDHPVAMMKAVQAVVHHNETADRAYELYLSE 293 (295)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHTC
T ss_pred HHhcCcCHHHHHHHHHHHHhCCCCHHHHHHHHHhh
Confidence 544 344433 333344443 578898887654
No 50
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=96.51 E-value=0.14 Score=41.86 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC---------CCCcCCCCCHHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC---------PYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~---------P~y~~~~~~~~~i~~y~~~i 78 (198)
|..++.+-++...+..+.-++.++-+.. .++.++++|+|++.+.. |-.... |-+++..|-+.|
T Consensus 13 ~~~~~a~~lr~l~~~~~~i~~~~ayD~~------sA~l~e~aG~dai~vs~~s~a~~~G~pD~~~v--t~~em~~~~~~I 84 (305)
T 3ih1_A 13 TQEELANRFRALVEANEILQIPGAHDAM------AALVARNTGFLALYLSGAAYTASKGLPDLGIV--TSTEVAERARDL 84 (305)
T ss_dssp CHHHHHHHHHHHHHSSSCEEEEBCSSHH------HHHHHHHTTCSCEEECHHHHHHHHTCCSSSCS--CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCCcEEEecCcCHH------HHHHHHHcCCCEEEECcHHHHHhCCCCCCCcC--CHHHHHHHHHHH
Confidence 3457777777766552444566777643 35666778999999986 333333 599999999999
Q ss_pred HccCCCCEEEEeCCCCcccccC-HHHHHHHHcCCCEEEEeeC--C-------------------HHHHHHHHhhcCCCCe
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDIS-VDTLVKLAHHENIRGVKDT--D-------------------NIKLANMANQTKDLNF 136 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~-~~~l~~L~~~p~i~giK~s--d-------------------~~~~~~~~~~~~~~~~ 136 (198)
++.+++| ++-|.|.-.|.... ..+++++.+ -.+.|+|.+ . ..+++... .. +++|
T Consensus 85 ~r~~~~p-viaD~d~Gyg~~~~v~~~v~~l~~-aGaagv~iED~~~~krcGh~~gk~l~~~~e~~~rI~Aa~-~A-~~~~ 160 (305)
T 3ih1_A 85 VRATDLP-VLVDIDTGFGGVLNVARTAVEMVE-AKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIK-EV-APSL 160 (305)
T ss_dssp HHHHCCC-EEEECTTCSSSHHHHHHHHHHHHH-TTCSEEEEECBCSSCCTTCTTCCCBCCHHHHHHHHHHHH-HH-CTTS
T ss_pred HHhcCCC-EEEECCCCCCCHHHHHHHHHHHHH-hCCcEEEECCCCCCcccCCCCCCcccCHHHHHHHHHHHH-Hc-CCCe
Confidence 9999999 67788854443211 122333333 589999988 2 12344444 23 6788
Q ss_pred EEEecChhh--------HH---HHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711 137 SVFAGSAGY--------LL---SGLLVGCAGGINALSAVLGGPICELYDLA 176 (198)
Q Consensus 137 ~v~~G~d~~--------~~---~~l~~G~~G~is~~~n~~P~~~~~l~~~~ 176 (198)
.|..-.|.. +- ....+|+++++.-.. --++.+.++.+++
T Consensus 161 ~I~ARtda~~~~g~~~ai~Ra~ay~eAGAD~i~~e~~-~~~~~~~~i~~~~ 210 (305)
T 3ih1_A 161 YIVARTDARGVEGLDEAIERANAYVKAGADAIFPEAL-QSEEEFRLFNSKV 210 (305)
T ss_dssp EEEEEECCHHHHCHHHHHHHHHHHHHHTCSEEEETTC-CSHHHHHHHHHHS
T ss_pred EEEEeeccccccCHHHHHHHHHHHHHcCCCEEEEcCC-CCHHHHHHHHHHc
Confidence 887665543 21 124679999876432 1346666666654
No 51
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=96.49 E-value=0.14 Score=41.48 Aligned_cols=159 Identities=11% Similarity=0.071 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-C----CcCCC---CCHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP-Y----YFQKK---MTEDLIYEHFIS 77 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P-~----y~~~~---~~~~~i~~y~~~ 77 (198)
.+|..++..-++...+..+.-++.++-+..+ ++.++++|+|++.+..- . +..|+ .|-+++..|-+.
T Consensus 3 ~m~~~~~~~~lr~l~~~~~~i~~~~a~D~~s------A~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~ 76 (287)
T 3b8i_A 3 RASHHELRAMFRALLDSSRCYHTASVFDPMS------ARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATR 76 (287)
T ss_dssp CCCHHHHHHHHHHHHHSSCCEECEECCSHHH------HHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhCCCcEEEecCCCHHH------HHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 4677777777777765434445667776543 55666789999998753 1 22222 469999999999
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHH----HHcCCCEEEEeeC--C------------------HHHHHHHHhhcCC
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVK----LAHHENIRGVKDT--D------------------NIKLANMANQTKD 133 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~----L~~~p~i~giK~s--d------------------~~~~~~~~~~~~~ 133 (198)
|++.+++| ++-|.|. |+. +++...+ +.+ -.+.|+|.+ . ..+++........
T Consensus 77 I~r~~~~P-viaD~d~--Gyg-~~~~~~~~v~~l~~-aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~ 151 (287)
T 3b8i_A 77 IGRVARLP-VIADADH--GYG-NALNVMRTVVELER-AGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVD 151 (287)
T ss_dssp HHTTCSSC-EEEECTT--CSS-SHHHHHHHHHHHHH-HTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCS
T ss_pred HHhcCCCC-EEEECCC--CCC-CHHHHHHHHHHHHH-hCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCC
Confidence 99999999 6889984 554 6554443 443 689999987 2 1344444433335
Q ss_pred CCeEEEecChh-------hHH---HHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711 134 LNFSVFAGSAG-------YLL---SGLLVGCAGGINALSAVLGGPICELYDLA 176 (198)
Q Consensus 134 ~~~~v~~G~d~-------~~~---~~l~~G~~G~is~~~n~~P~~~~~l~~~~ 176 (198)
++|.|..=.|. .+- ....+|+++++.-.- --++.+.++.+++
T Consensus 152 ~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~-~~~~~~~~i~~~~ 203 (287)
T 3b8i_A 152 PALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGV-RDFAHLEAIAEHL 203 (287)
T ss_dssp TTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC-CSHHHHHHHHTTC
T ss_pred CCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC-CCHHHHHHHHHhC
Confidence 67877653332 221 224579998875421 1235666665543
No 52
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=96.44 E-value=0.092 Score=43.11 Aligned_cols=156 Identities=11% Similarity=0.078 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhc-CCeEEEeCCCCc-------HHHHHHHHHHHHhcCCCEEEEc--CCCCc--CCCCCHHHHHHHHHHHH
Q psy9711 12 KLKIISTLRQET-KKTIIAGTYCES-------TRATIDLTQKAAKAGANAALIL--CPYYF--QKKMTEDLIYEHFISVA 79 (198)
Q Consensus 12 r~~l~~~~~~~~-~~pvi~gv~~~~-------~~~~i~~a~~a~~~Gad~v~~~--~P~y~--~~~~~~~~i~~y~~~i~ 79 (198)
..++++.+.+.. +.|+++.++.+. .++-.+.++.+.+ |+|++-+- .|... ..-.+.+.+.+..+.|-
T Consensus 120 ~~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr 198 (336)
T 1f76_A 120 VDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIK 198 (336)
T ss_dssp HHHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 345555554433 679999988766 6777888888876 99998664 45421 00012455556666666
Q ss_pred ccC---------CCCEEEEeCCCCcccccCHHHHHHH---HcCCCEEEEeeC-C------------------------H-
Q psy9711 80 DNS---------PIPVIIYNNTFVTNIDISVDTLVKL---AHHENIRGVKDT-D------------------------N- 121 (198)
Q Consensus 80 ~~~---------~~pi~lYn~P~~tg~~l~~~~l~~L---~~~p~i~giK~s-d------------------------~- 121 (198)
+.+ ++||++=-.| +++.+.+.++ ++--.+.||..+ . .
T Consensus 199 ~~~~~~~~~~g~~~Pv~vKi~~-----~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~ 273 (336)
T 1f76_A 199 NKQNDLQAMHHKYVPIAVKIAP-----DLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQL 273 (336)
T ss_dssp HHHHHHHHHHTSCCCEEEECCS-----CCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHH
T ss_pred HHHHhhhhcccccCceEEEecC-----CCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHH
Confidence 555 7999985433 2454444333 322345555543 1 0
Q ss_pred ---HHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEecccccc--hHHHHHHHH
Q psy9711 122 ---IKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAVL--GGPICELYD 174 (198)
Q Consensus 122 ---~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~ 174 (198)
..+.++. +..++++.|+. |.. ......+..|++++..+.+.+. |.++.++.+
T Consensus 274 ~~~~~i~~i~-~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~~~i~~ 334 (336)
T 1f76_A 274 KSTEIIRRLS-LELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT 334 (336)
T ss_dssp HHHHHHHHHH-HHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHHHHHHh
Confidence 1222332 23333455543 222 3466778899999999988765 888776644
No 53
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=96.43 E-value=0.17 Score=40.53 Aligned_cols=141 Identities=20% Similarity=0.226 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHH--HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTR--ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~--~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+|.+.-.++++.+.+.. ++|++.=...+... -.-+.++.++++|+|++++.- . ..++ .+-|...++..+
T Consensus 79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipD-----l--p~ee-~~~~~~~~~~~g 150 (271)
T 3nav_A 79 TTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIAD-----V--PTNE-SQPFVAAAEKFG 150 (271)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETT-----S--CGGG-CHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECC-----C--CHHH-HHHHHHHHHHcC
Confidence 45566677888887763 88986533332222 225689999999999999841 1 1344 344666677778
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc-CCCEE---------EEeeC---CHHHHHHHHhhcCCCCeEEEecCh----hhH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIR---------GVKDT---DNIKLANMANQTKDLNFSVFAGSA----GYL 146 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~---------giK~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~ 146 (198)
+..+..=.|. -+.+.++++++ -+.++ |.+.. +...+.+.+++.. +..+..|.+ +..
T Consensus 151 l~~I~lvap~-----t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~~ 223 (271)
T 3nav_A 151 IQPIFIAPPT-----ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD--APPALLGFGISEPAQV 223 (271)
T ss_dssp CEEEEEECTT-----CCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT--CCCEEECSSCCSHHHH
T ss_pred CeEEEEECCC-----CCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc--CCCEEEECCCCCHHHH
Confidence 8765554553 24577777774 33333 33332 2222222232333 344554543 234
Q ss_pred HHHhhcCCCeEEeccc
Q psy9711 147 LSGLLVGCAGGINALS 162 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~ 162 (198)
...+..|+||+|.|.+
T Consensus 224 ~~~~~~gADgvIVGSA 239 (271)
T 3nav_A 224 KQAIEAGAAGAISGSA 239 (271)
T ss_dssp HHHHHTTCSEEEESHH
T ss_pred HHHHHcCCCEEEECHH
Confidence 4478899999999975
No 54
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=96.40 E-value=0.064 Score=43.44 Aligned_cols=90 Identities=22% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
..+.+|..+-++.++++. +..|++=+ .....+++++.++.++++|||++++-.+ ++ .++ .+++++
T Consensus 132 l~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~----~~--~~~----~~~i~~ 201 (287)
T 3b8i_A 132 LICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGV----RD--FAH----LEAIAE 201 (287)
T ss_dssp BCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC----CS--HHH----HHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC----CC--HHH----HHHHHH
Confidence 467889999999999986 45555543 2334689999999999999999998643 33 443 466777
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
+.++|+++- +......++.+.+.++
T Consensus 202 ~~~~P~ii~--~~g~~~~~~~~eL~~l 226 (287)
T 3b8i_A 202 HLHIPLMLV--TYGNPQLRDDARLARL 226 (287)
T ss_dssp TCCSCEEEE--CTTCGGGCCHHHHHHT
T ss_pred hCCCCEEEe--CCCCCCCCCHHHHHHc
Confidence 888999942 2111234677766666
No 55
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=96.39 E-value=0.061 Score=45.86 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHHhc-----CCeEEEeCCC-------------------------------CcHHHHHHHHHHHHhcC
Q psy9711 7 STEEEKLKIISTLRQET-----KKTIIAGTYC-------------------------------ESTRATIDLTQKAAKAG 50 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~-------------------------------~~~~~~i~~a~~a~~~G 50 (198)
.+.+|-.+=++.++++. ..-|++=+-+ ..++++|++++.+.+ |
T Consensus 205 v~~~e~~~rI~Aa~~A~~~~~~d~~IiARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-G 283 (435)
T 3lg3_A 205 VPTQEAIQKLVAARLAADVLGVPTLLIARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-Y 283 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-G
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHHHHHc-c
Confidence 46777777777776654 3445555543 568999999999999 9
Q ss_pred CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHH----HHHHcC
Q psy9711 51 ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTL----VKLAHH 110 (198)
Q Consensus 51 ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l----~~L~~~ 110 (198)
||.+.+-++. ++ .+++.++-+.|....+..++.||. |..+ ...++.+.+ .+|++.
T Consensus 284 AD~if~E~~~---~~--~~ei~~f~~~v~~~~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~l 344 (435)
T 3lg3_A 284 ADLVWCETST---PD--LALAKRFADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAM 344 (435)
T ss_dssp CSEEEECCSS---CC--HHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHT
T ss_pred CCEEEecCCC---CC--HHHHHHHHHHhccccCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHc
Confidence 9999996653 55 999999999998778899999986 5432 224776665 455554
No 56
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=96.37 E-value=0.34 Score=40.12 Aligned_cols=164 Identities=10% Similarity=-0.013 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCC-EEEEc--CCCCc---CCCCCHHHHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGAN-AALIL--CPYYF---QKKMTEDLIYEHFISVA 79 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad-~v~~~--~P~y~---~~~~~~~~i~~y~~~i~ 79 (198)
...+...+-++...+.. +.||++++++.+.++-++.++.+++.|++ ++-+- .|.-- ....+++.+.+..+.+.
T Consensus 110 ~G~~~~~~~l~~~~~~~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~ 189 (345)
T 3oix_A 110 LGINYYLDYVTELQKQPDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVF 189 (345)
T ss_dssp SCHHHHHHHHHHHHHSTTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhhccCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHH
Confidence 34455555444433333 89999999999999999999999999987 65543 44421 11014788999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHc---CCCEEEEe--------------------------eC---C----HHH
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH---HENIRGVK--------------------------DT---D----NIK 123 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~giK--------------------------~s---d----~~~ 123 (198)
+++++||.+=-.|. ++.+.+.++++ ...|.++- .| . +..
T Consensus 190 ~~~~~PV~vKi~p~-----~~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~ 264 (345)
T 3oix_A 190 TYFTKPLGIKLPPY-----FDIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALAN 264 (345)
T ss_dssp TTCCSCEEEEECCC-----CCHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHH
T ss_pred HHhCCCeEEEECCC-----CCHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHH
Confidence 98999999987774 46666766652 23343220 11 1 122
Q ss_pred HHHHHhhcCCCCeEEEe-c-Ch--hhHHHHhhcCCCeEEeccccc--chHHHHHHHHHH
Q psy9711 124 LANMANQTKDLNFSVFA-G-SA--GYLLSGLLVGCAGGINALSAV--LGGPICELYDLA 176 (198)
Q Consensus 124 ~~~~~~~~~~~~~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~~~ 176 (198)
+.++. +..++++.|+. | .. ......+..|++++..+.+.+ -|.++.++.+.+
T Consensus 265 v~~i~-~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~L 322 (345)
T 3oix_A 265 VHAFY-KRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKEL 322 (345)
T ss_dssp HHHHH-TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHH
T ss_pred HHHHH-HHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHHH
Confidence 33333 34444666653 2 22 245667789999999888722 376666665544
No 57
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=96.36 E-value=0.089 Score=44.34 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=43.2
Q ss_pred eEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC------CCCcC-CCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 26 TIIAG-TYCESTRATIDLTQKAAKAGANAALILC------PYYFQ-KKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 26 pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~------P~y~~-~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
++|+| ++-++.+.+.++++.++++|++++-... |+.++ ++ . +-...++++++..++|++
T Consensus 144 ~~Iigpcsves~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~--~-egl~~L~~~~~~~Gl~~~ 210 (385)
T 3nvt_A 144 VFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLG--L-EGLKILKRVSDEYGLGVI 210 (385)
T ss_dssp EEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCT--H-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCC--H-HHHHHHHHHHHHcCCEEE
Confidence 56666 5667899999999999999999887653 44232 33 4 445677777877777776
No 58
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=96.34 E-value=0.088 Score=44.94 Aligned_cols=99 Identities=12% Similarity=0.064 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHHhc-----CCeEEEeCCC-------------------------------CcHHHHHHHHHHHHhc
Q psy9711 6 KSTEEEKLKIISTLRQET-----KKTIIAGTYC-------------------------------ESTRATIDLTQKAAKA 49 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~-------------------------------~~~~~~i~~a~~a~~~ 49 (198)
..+.+|..+=++.++++. ..-|++=+-+ ..++++|++++.+.+
T Consensus 204 lv~~~e~v~rI~Aar~A~~~~g~d~~IiARTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~- 282 (439)
T 3i4e_A 204 LVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP- 282 (439)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-
Confidence 356778777777777664 3445554432 458999999999998
Q ss_pred CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHH----HHHHcC
Q psy9711 50 GANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTL----VKLAHH 110 (198)
Q Consensus 50 Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l----~~L~~~ 110 (198)
|||.+.+-++. ++ .+++.++-+.+....+.+++.||. |..+ ...++.+.+ .+|++.
T Consensus 283 GAD~if~E~~~---~~--~eei~~f~~~v~~~~P~~~l~~~~sPsfnw~~~~~~~~~~~f~~eL~~l 344 (439)
T 3i4e_A 283 YADLIWCETGK---PD--LEYAKKFAEAIHKQFPGKLLSYNCSPSFNWKKNLDDATIAKFQKELGAM 344 (439)
T ss_dssp TCSEEEECCSS---CC--HHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHTHHHHHHHH
T ss_pred hCCEEEecCCC---CC--HHHHHHHHHHhcccCCceEEeeCCCCCCcCcccCCHHHHHHHHHHHHHc
Confidence 99999996653 45 999999999998778999999995 6432 123666553 356554
No 59
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=96.32 E-value=0.042 Score=44.57 Aligned_cols=98 Identities=20% Similarity=0.197 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCC----CcHHHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYC----ESTRATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~----~~~~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~ 77 (198)
..+.+|..+-++.++++. +..|++=+-+ ...+++++.++.++++|||++++-. + ++ .+++ ++
T Consensus 128 l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----~~--~~~~----~~ 197 (290)
T 2hjp_A 128 LVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----KT--PDEI----LA 197 (290)
T ss_dssp BCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCC----SS--SHHH----HH
T ss_pred ccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCC----CC--HHHH----HH
Confidence 345667788888888886 4556554432 2379999999999999999999865 3 33 5555 55
Q ss_pred HHccCC--CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 78 VADNSP--IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 78 i~~~~~--~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
++++.+ +|++. |.. .+..++. .+|.+..++.-+-..
T Consensus 198 i~~~~~~~vP~i~-n~~--~~~~~~~---~eL~~lG~v~~v~~~ 235 (290)
T 2hjp_A 198 FVKSWPGKVPLVL-VPT--AYPQLTE---ADIAALSKVGIVIYG 235 (290)
T ss_dssp HHHHCCCSSCEEE-CGG--GCTTSCH---HHHHTCTTEEEEEEC
T ss_pred HHHHcCCCCCEEE-ecc--CCCCCCH---HHHHhcCCeeEEEec
Confidence 666666 99887 532 2334554 566666556666665
No 60
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=96.27 E-value=0.083 Score=43.15 Aligned_cols=92 Identities=18% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHhc-----CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET-----KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
..+.+|..+-++.++++. +.-|++=+-+ ...+++|++++.+.++|||++++-.+ .+ .+++.++-+.
T Consensus 139 l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~----~~--~~~~~~i~~~ 212 (307)
T 3lye_A 139 VVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGF----RS--KEQAAAAVAA 212 (307)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCC----SC--HHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCC----CC--HHHHHHHHHH
Confidence 356777666677766654 3455554433 34689999999999999999988643 33 7766665555
Q ss_pred HHccCCCCEEEEeC-CCCcccccCHHHHHHH
Q psy9711 78 VADNSPIPVIIYNN-TFVTNIDISVDTLVKL 107 (198)
Q Consensus 78 i~~~~~~pi~lYn~-P~~tg~~l~~~~l~~L 107 (198)
+. ++|+++ |. +......++.+.+.+|
T Consensus 213 ~~---~~Pv~~-n~~~~g~~p~~t~~eL~~l 239 (307)
T 3lye_A 213 LA---PWPLLL-NSVENGHSPLITVEEAKAM 239 (307)
T ss_dssp HT---TSCBEE-EEETTSSSCCCCHHHHHHH
T ss_pred cc---CCceeE-EeecCCCCCCCCHHHHHHc
Confidence 53 478744 42 3211224677666666
No 61
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=96.27 E-value=0.32 Score=38.67 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=45.7
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH-----------------HHHHHHHHHHHcc-CCCCEEE--Ee
Q psy9711 31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTE-----------------DLIYEHFISVADN-SPIPVII--YN 90 (198)
Q Consensus 31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~-----------------~~i~~y~~~i~~~-~~~pi~l--Yn 90 (198)
.|..+.+++++.++..++.|+|.+-+--|+..+. ++. +...+..++|.+. +++|+++ |.
T Consensus 25 ~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~-~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~ 103 (268)
T 1qop_A 25 LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPL-ADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYA 103 (268)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCT-TCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCcc-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 5777889999999999999999999999985321 122 2234567777777 7899966 65
Q ss_pred CC
Q psy9711 91 NT 92 (198)
Q Consensus 91 ~P 92 (198)
+|
T Consensus 104 n~ 105 (268)
T 1qop_A 104 NL 105 (268)
T ss_dssp HH
T ss_pred cH
Confidence 55
No 62
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=96.27 E-value=0.066 Score=43.96 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCCC---cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYCE---STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~---~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..+.+|..+-++.++++. +..|++=+-.. ..+++|+.++.++++|||++++-.+ ++ .+++ ++++
T Consensus 152 L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~----~~--~e~~----~~i~ 221 (318)
T 1zlp_A 152 VVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEAP----AN--VDEL----KEVS 221 (318)
T ss_dssp BCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC----CS--HHHH----HHHH
T ss_pred cCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC----CC--HHHH----HHHH
Confidence 356778888888888886 44555544332 2379999999999999999998654 33 4544 5566
Q ss_pred ccCCCCEEEEeC-CCCcccccCHHHHHHH
Q psy9711 80 DNSPIPVIIYNN-TFVTNIDISVDTLVKL 107 (198)
Q Consensus 80 ~~~~~pi~lYn~-P~~tg~~l~~~~l~~L 107 (198)
++.++|++. |. +......++.+.+.+|
T Consensus 222 ~~l~~P~la-n~~~~g~~~~~~~~eL~~l 249 (318)
T 1zlp_A 222 AKTKGLRIA-NMIEGGKTPLHTPEEFKEM 249 (318)
T ss_dssp HHSCSEEEE-EECTTSSSCCCCHHHHHHH
T ss_pred HhcCCCEEE-EeccCCCCCCCCHHHHHHc
Confidence 667799876 53 2111135777766666
No 63
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=96.19 E-value=0.11 Score=42.35 Aligned_cols=141 Identities=9% Similarity=0.040 Sum_probs=88.7
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-----CCCcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-----PYYFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-----P~y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t 95 (198)
+.-++.++-+..+ ++.++++|+|++.+.. -....|+ .|-+++..|-+.|++.+++| ++-|.|.
T Consensus 22 ~~i~~~~a~D~~s------A~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~P-viaD~d~-- 92 (298)
T 3eoo_A 22 QPLQVVGAITAYA------AKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLP-LLVDIDT-- 92 (298)
T ss_dssp SSEEEEECSSHHH------HHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSC-EEEECTT--
T ss_pred CcEEEecCCCHHH------HHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCe-EEEECCC--
Confidence 4445667776544 3445667999999975 2222232 35899999999999999999 6778885
Q ss_pred ccccCHHHHHH----HHcCCCEEEEeeC--C-------------------HHHHHHHHhhcCCCCeEEEecChhhHHH--
Q psy9711 96 NIDISVDTLVK----LAHHENIRGVKDT--D-------------------NIKLANMANQTKDLNFSVFAGSAGYLLS-- 148 (198)
Q Consensus 96 g~~l~~~~l~~----L~~~p~i~giK~s--d-------------------~~~~~~~~~~~~~~~~~v~~G~d~~~~~-- 148 (198)
|+. +++.+.+ +.+ -.+.|+|.+ . ..+++.......+++|.|..=.|.....
T Consensus 93 Gyg-~~~~v~~~v~~l~~-aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gl 170 (298)
T 3eoo_A 93 GWG-GAFNIARTIRSFIK-AGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGI 170 (298)
T ss_dssp CSS-SHHHHHHHHHHHHH-TTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHH-hCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCH
Confidence 543 5544433 333 578899887 1 1223322322345788887655543222
Q ss_pred ---------HhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711 149 ---------GLLVGCAGGINALSAVLGGPICELYDLA 176 (198)
Q Consensus 149 ---------~l~~G~~G~is~~~n~~P~~~~~l~~~~ 176 (198)
...+|+|++..-.. --++.+.++.+++
T Consensus 171 deai~Ra~ay~~AGAD~if~~~~-~~~ee~~~~~~~~ 206 (298)
T 3eoo_A 171 DAAIERAIAYVEAGADMIFPEAM-KTLDDYRRFKEAV 206 (298)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCC-CSHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhcCCCEEEeCCC-CCHHHHHHHHHHc
Confidence 24679999875432 2467777777766
No 64
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=96.18 E-value=0.11 Score=42.38 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHhc-----CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET-----KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
..+.+|..+=++.++++. ++-|++=+-+ ...+++|++++.+.++|||++++-.+ .+ .+++. +
T Consensus 131 l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~----~~--~~ei~----~ 200 (302)
T 3fa4_A 131 LVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGI----TS--REMAR----Q 200 (302)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTC----CC--HHHHH----H
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCC----CC--HHHHH----H
Confidence 356788777777777764 4556665533 35799999999999999999998654 23 66654 4
Q ss_pred HHccC-CCCEEEEe-CCCCcccccCHHHHHHH
Q psy9711 78 VADNS-PIPVIIYN-NTFVTNIDISVDTLVKL 107 (198)
Q Consensus 78 i~~~~-~~pi~lYn-~P~~tg~~l~~~~l~~L 107 (198)
++++. +.|+++ | .+......++.+.+.+|
T Consensus 201 ~~~~~~~~Pl~~-n~~~~g~~p~~~~~eL~~l 231 (302)
T 3fa4_A 201 VIQDLAGWPLLL-NMVEHGATPSISAAEAKEM 231 (302)
T ss_dssp HHHHTTTSCEEE-ECCTTSSSCCCCHHHHHHH
T ss_pred HHHHhcCCceeE-EEecCCCCCCCCHHHHHHc
Confidence 55555 488855 4 33211224677777777
No 65
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=96.11 E-value=0.08 Score=43.73 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=69.1
Q ss_pred HHHHHhcCCCEEEEcCCCCcCCCCCHH----HHHHHHHHHHccC---CCCEEE--EeCCCCcccccC-------HHHHHH
Q psy9711 43 TQKAAKAGANAALILCPYYFQKKMTED----LIYEHFISVADNS---PIPVII--YNNTFVTNIDIS-------VDTLVK 106 (198)
Q Consensus 43 a~~a~~~Gad~v~~~~P~y~~~~~~~~----~i~~y~~~i~~~~---~~pi~l--Yn~P~~tg~~l~-------~~~l~~ 106 (198)
.+++.++|||+|-++-.+ .+. +++ +..+++++|.+.+ ++|+++ +-.|..-+...+ |+.+..
T Consensus 116 ve~a~~~GADAVk~lv~~--g~d-~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~ 192 (332)
T 3iv3_A 116 IKRLKEAGADAVKFLLYY--DVD-GDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVND 192 (332)
T ss_dssp HHHHHHTTCSEEEEEEEE--CTT-SCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEc--CCC-chHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHH
Confidence 688899999999998543 332 132 4667777777665 899998 554532222333 444544
Q ss_pred HHc-C--C--CEEEEeeC---CHH-------------------HHHHHHhhcCCCCeEEEecCh--h----hHHHHhhcC
Q psy9711 107 LAH-H--E--NIRGVKDT---DNI-------------------KLANMANQTKDLNFSVFAGSA--G----YLLSGLLVG 153 (198)
Q Consensus 107 L~~-~--p--~i~giK~s---d~~-------------------~~~~~~~~~~~~~~~v~~G~d--~----~~~~~l~~G 153 (198)
.++ . + ..--+|.. |+. .+.++. ...+-.+.+++|.- . ++-.++..|
T Consensus 193 a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~-~a~~~P~v~lsgG~~~~~fl~~v~~A~~aG 271 (332)
T 3iv3_A 193 AMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQE-ASTDLPYIYLSAGVSAELFQETLVFAHKAG 271 (332)
T ss_dssp HHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHH-HTCSSCEEEECTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence 442 1 2 44444544 652 355555 34445666666532 2 233567899
Q ss_pred C--CeEEeccc
Q psy9711 154 C--AGGINALS 162 (198)
Q Consensus 154 ~--~G~is~~~ 162 (198)
+ .|+..|=+
T Consensus 272 a~f~Gv~~GRn 282 (332)
T 3iv3_A 272 AKFNGVLCGRA 282 (332)
T ss_dssp CCCCEEEECHH
T ss_pred CCcceEEeeHH
Confidence 9 99998864
No 66
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=96.10 E-value=0.087 Score=42.86 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..+.+|..+-++.++++. +.-|++=+-+ ...+++|++++.+.++|||++++-.+ .+ .+++.++-+
T Consensus 134 l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~----~~--~ee~~~~~~--- 204 (298)
T 3eoo_A 134 CVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAM----KT--LDDYRRFKE--- 204 (298)
T ss_dssp BCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC----CS--HHHHHHHHH---
T ss_pred ecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCC----CC--HHHHHHHHH---
Confidence 357788888888888886 4455555533 24688999999999999999998654 23 766655444
Q ss_pred ccCCCCEEEEeC-CCCcccccCHHHHHHH
Q psy9711 80 DNSPIPVIIYNN-TFVTNIDISVDTLVKL 107 (198)
Q Consensus 80 ~~~~~pi~lYn~-P~~tg~~l~~~~l~~L 107 (198)
+++.|+++ |. .......++.+.+.+|
T Consensus 205 -~~~~Pl~~-n~~~~g~tp~~~~~eL~~l 231 (298)
T 3eoo_A 205 -AVKVPILA-NLTEFGSTPLFTLDELKGA 231 (298)
T ss_dssp -HHCSCBEE-ECCTTSSSCCCCHHHHHHT
T ss_pred -HcCCCeEE-EeccCCCCCCCCHHHHHHc
Confidence 44688865 32 1111113565555555
No 67
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=95.98 E-value=0.073 Score=42.80 Aligned_cols=88 Identities=19% Similarity=0.125 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHhc---CCe--EEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKT--IIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDL 70 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~p--vi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~ 70 (198)
..+.+|..+-++.++++. ++| |++=+-. ...+++++.++.++++|||++++-.+ ++ .++
T Consensus 122 l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~----~~--~~~ 195 (275)
T 2ze3_A 122 LYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA----LQ--SQD 195 (275)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC----CC--HHH
T ss_pred cCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC----CC--HHH
Confidence 357788888899998884 455 4443333 14799999999999999999988653 43 554
Q ss_pred HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 71 IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 71 i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
+ ++++++.++|+. ++. +...++.+.+.++
T Consensus 196 ~----~~i~~~~~~P~n-~~~---~~~~~~~~eL~~l 224 (275)
T 2ze3_A 196 I----RALADALRVPLN-VMA---FPGSPVPRALLDA 224 (275)
T ss_dssp H----HHHHHHCSSCEE-EEC---CTTSCCHHHHHHT
T ss_pred H----HHHHHhcCCCEE-Eec---CCCCCCHHHHHHc
Confidence 4 556666779973 442 1124565555544
No 68
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=95.94 E-value=0.16 Score=43.30 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHhc-----CCeEEEeCCC-------------------------------CcHHHHHHHHHHHHhcC
Q psy9711 7 STEEEKLKIISTLRQET-----KKTIIAGTYC-------------------------------ESTRATIDLTQKAAKAG 50 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~-------------------------------~~~~~~i~~a~~a~~~G 50 (198)
.+.+|..+=++.++++. ..-|++=+-+ ..++++|++++.+.+ |
T Consensus 201 vp~~e~v~rI~AAr~A~~~~g~d~vIiARTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-g 279 (429)
T 1f8m_A 201 IPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAP-F 279 (429)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-G
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCEEEEEEechhhhccccccccccccccccCCCCcccccccccCHHHHHHHHHHHHh-c
Confidence 56777777777777665 3445554433 468999999999999 9
Q ss_pred CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CCCc-ccccCHHHHHH
Q psy9711 51 ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TFVT-NIDISVDTLVK 106 (198)
Q Consensus 51 ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~~t-g~~l~~~~l~~ 106 (198)
||.+.+-++. ++ .+++.++-+.+-...+..++.||. |..+ ...++++.+++
T Consensus 280 AD~if~e~~~---~~--~eei~~f~~~v~~~~P~~~La~n~sPsf~w~~~~~~~~~~~ 332 (429)
T 1f8m_A 280 ADLIWMETGT---PD--LEAARQFSEAVKAEYPDQMLAYNCSPSFNWKKHLDDATIAK 332 (429)
T ss_dssp CSEEEECCSS---CC--HHHHHHHHHHHHTTCTTCEEEEECCTTSCHHHHCCHHHHHH
T ss_pred CCEEEeCCCC---CC--HHHHHHHHHHhcccCCCceeecCCCCCCCcccccchhhHhH
Confidence 9999985432 44 889988888886545665788986 5432 22366666544
No 69
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=95.86 E-value=0.071 Score=43.05 Aligned_cols=82 Identities=13% Similarity=0.038 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEE--EeC-------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTII--AGT-------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE 73 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi--~gv-------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~ 73 (198)
.+|.+|-.+.++.+++.+ +++|. ++. +..+.++.++.++.+.+.|+|.+.+....= .. +++++.+
T Consensus 112 ~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G-~~--~P~~~~~ 188 (295)
T 1ydn_A 112 NCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIG-RG--TPDTVAA 188 (295)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTS-CC--CHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCC-Cc--CHHHHHH
Confidence 456666666666666655 55554 221 123567777777777777777776664322 22 3777777
Q ss_pred HHHHHHccCC-CCEEEEe
Q psy9711 74 HFISVADNSP-IPVIIYN 90 (198)
Q Consensus 74 y~~~i~~~~~-~pi~lYn 90 (198)
.++.|.+.++ +|+.++-
T Consensus 189 lv~~l~~~~~~~~l~~H~ 206 (295)
T 1ydn_A 189 MLDAVLAIAPAHSLAGHY 206 (295)
T ss_dssp HHHHHHTTSCGGGEEEEE
T ss_pred HHHHHHHhCCCCeEEEEE
Confidence 7777777765 6776653
No 70
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.82 E-value=0.07 Score=43.34 Aligned_cols=81 Identities=7% Similarity=-0.085 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeC---------CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGT---------YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH 74 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv---------~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y 74 (198)
+|.+|-.+.++.+++.+ ++.|-+.+ +..+.+.+++.++.+.+.|+|.+.+..-. ... +|.++.+.
T Consensus 117 ~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~-G~~--~P~~~~~l 193 (302)
T 2ftp_A 117 CSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTI-GVG--TAGATRRL 193 (302)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESS-SCC--CHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-CCc--CHHHHHHH
Confidence 56666666666666665 45553221 11356777777777777777776665222 222 37777777
Q ss_pred HHHHHccC-CCCEEEEe
Q psy9711 75 FISVADNS-PIPVIIYN 90 (198)
Q Consensus 75 ~~~i~~~~-~~pi~lYn 90 (198)
++.|.+.+ ++|+.+|-
T Consensus 194 v~~l~~~~~~~~l~~H~ 210 (302)
T 2ftp_A 194 IEAVASEVPRERLAGHF 210 (302)
T ss_dssp HHHHTTTSCGGGEEEEE
T ss_pred HHHHHHhCCCCeEEEEe
Confidence 77777777 47776653
No 71
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=95.79 E-value=0.19 Score=40.83 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCC----CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYC----ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~----~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
..+.+|..+-++.++++. +..|++=+-+ ...+++++.++.++++|||++++-++. ++ .+++.++-+.+
T Consensus 132 l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~---~~--~~~~~~i~~~~ 206 (295)
T 1s2w_A 132 LADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK---AD--PSDIEAFMKAW 206 (295)
T ss_dssp BCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS---SS--SHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCC---CC--HHHHHHHHHHc
Confidence 356778888888998886 4555554432 236999999999999999999986421 33 55554444444
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
. .++|++ +| |...| ..+.+.+.+|
T Consensus 207 ~--~~~P~i-~~-~~~~~-~~~~~eL~~l 230 (295)
T 1s2w_A 207 N--NQGPVV-IV-PTKYY-KTPTDHFRDM 230 (295)
T ss_dssp T--TCSCEE-EC-CSTTT-TSCHHHHHHH
T ss_pred C--CCCCEE-Ee-CCCCC-CCCHHHHHHc
Confidence 2 238985 45 43222 3455555555
No 72
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=95.73 E-value=0.12 Score=43.98 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHHhc-----CCeEEEeCCC---------------------------------CcHHHHHHHHHHHHh
Q psy9711 7 STEEEKLKIISTLRQET-----KKTIIAGTYC---------------------------------ESTRATIDLTQKAAK 48 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-----~~pvi~gv~~---------------------------------~~~~~~i~~a~~a~~ 48 (198)
.+.+|..+=++.++++. ..-|++=+-+ ..++++|++++.+.+
T Consensus 198 vp~ee~v~rI~AAr~A~~~~g~d~vIiARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~ 277 (433)
T 3eol_A 198 IPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP 277 (433)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCccccccccCcccccccceeccCcccccccccccCCHHHHHHHHHHHHh
Confidence 46777777777776664 3445654432 468999999999999
Q ss_pred cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC-CC
Q psy9711 49 AGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN-TF 93 (198)
Q Consensus 49 ~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~-P~ 93 (198)
|||.+.+-++ .++ .+++.++-+.|-...+.+++.||. |.
T Consensus 278 -GAD~If~e~~---~~~--~eei~~f~~~v~~~~P~~~L~~~~sPs 317 (433)
T 3eol_A 278 -YCDLIWMETS---KPD--LAQARRFAEAVHKAHPGKLLAYNCSPS 317 (433)
T ss_dssp -GCSEEEECCS---SCC--HHHHHHHHHHHHHHSTTCCEEEECCSS
T ss_pred -cCCEEEEeCC---CCC--HHHHHHHHHHhcccCCCcccccCCCCC
Confidence 9999999665 355 999999999998778888899985 54
No 73
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=95.73 E-value=0.16 Score=41.12 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=88.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC-C---CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP-Y---YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN 96 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P-~---y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg 96 (198)
+.-++.++-+..+ ++.++++|+|++.+..- . +..|+ .|-+++..|-+.|++.+++| ++-|.|. |
T Consensus 15 ~~i~~~~a~D~~s------A~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~P-viaD~d~--G 85 (290)
T 2hjp_A 15 RLFTAMAAHNPLV------AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIP-LIADIDT--G 85 (290)
T ss_dssp CCEEEEECSSHHH------HHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSC-EEEECTT--T
T ss_pred CcEEEecCCCHHH------HHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCC-EEEECCC--C
Confidence 4445667776544 45555689999999841 1 22232 46999999999999999999 6789984 5
Q ss_pred cccCHHHHHH----HHcCCCEEEEeeC--C---------------------HHHHHHHHhhcCCCCeEEEecChhh----
Q psy9711 97 IDISVDTLVK----LAHHENIRGVKDT--D---------------------NIKLANMANQTKDLNFSVFAGSAGY---- 145 (198)
Q Consensus 97 ~~l~~~~l~~----L~~~p~i~giK~s--d---------------------~~~~~~~~~~~~~~~~~v~~G~d~~---- 145 (198)
+. +++...+ +.+ -.+.|+|.+ . ..+++........++|.|..=.|..
T Consensus 86 yg-~~~~~~~~v~~l~~-aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~ 163 (290)
T 2hjp_A 86 FG-NAVNVHYVVPQYEA-AGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_dssp TS-SHHHHHHHHHHHHH-HTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTC
T ss_pred CC-CHHHHHHHHHHHHH-hCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccc
Confidence 55 5554443 433 678899876 2 1123333322223678776544433
Q ss_pred -----HH---HHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711 146 -----LL---SGLLVGCAGGINALSAVLGGPICELYDLAK 177 (198)
Q Consensus 146 -----~~---~~l~~G~~G~is~~~n~~P~~~~~l~~~~~ 177 (198)
+- ....+|+++++.-..---++.+.++.+++.
T Consensus 164 g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 164 GQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCSSSHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcC
Confidence 11 224579998876442223567777766654
No 74
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=95.73 E-value=0.14 Score=42.52 Aligned_cols=114 Identities=8% Similarity=0.015 Sum_probs=74.5
Q ss_pred CHHHHHH----HHHHHHHhc--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----CCCCHHH
Q psy9711 8 TEEEKLK----IISTLRQET--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQ----KKMTEDL 70 (198)
Q Consensus 8 t~~Er~~----l~~~~~~~~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----~~~~~~~ 70 (198)
|.+.|.+ +++.+++++ +.||.+=++ +.+.++++++++.+++.|+|.+-+....+.. +. .+..
T Consensus 197 slenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~~~ 275 (349)
T 3hgj_A 197 SLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPL-APGF 275 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCC-CTTT
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCC-Cccc
Confidence 4566654 555555555 678877554 3568999999999999999999998533221 11 0222
Q ss_pred HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711 71 IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 71 i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~ 128 (198)
-.++.+.|.+.+++||+. .|.--+++...++.+. -..+++=-. |+....++.
T Consensus 276 ~~~~~~~ir~~~~iPVi~------~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~ 332 (349)
T 3hgj_A 276 QVPFADAVRKRVGLRTGA------VGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAA 332 (349)
T ss_dssp THHHHHHHHHHHCCEEEE------CSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred cHHHHHHHHHHcCceEEE------ECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHH
Confidence 345677777777899886 4444578888888754 355665444 666555555
No 75
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=95.72 E-value=0.22 Score=40.41 Aligned_cols=151 Identities=12% Similarity=0.075 Sum_probs=89.1
Q ss_pred HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC----CCcCCC---CCHHHHHHHHHHHHccCCCCEEE
Q psy9711 16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP----YYFQKK---MTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P----~y~~~~---~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
++...+.-+.-++.|+-+..+ ++.++++|+|++.+..- .+..|+ .|-+++..+-+.|++.+++| ++
T Consensus 11 lr~l~~~~~~i~~~~a~D~~s------A~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~P-vi 83 (295)
T 1s2w_A 11 LKQMLNSKDLEFIMEAHNGLS------ARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVP-IL 83 (295)
T ss_dssp HHHHHHSSSCEEEEEECSHHH------HHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSC-EE
T ss_pred HHHHHhCCCcEEEecCCCHHH------HHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCC-EE
Confidence 444443324445678877544 44555679999999842 122222 35889999999999999999 88
Q ss_pred EeCCCCcccccCHHHH----HHHHcCCCEEEEeeC--C---------------------HHHHHHHHhhcCCCCeEEEec
Q psy9711 89 YNNTFVTNIDISVDTL----VKLAHHENIRGVKDT--D---------------------NIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l----~~L~~~p~i~giK~s--d---------------------~~~~~~~~~~~~~~~~~v~~G 141 (198)
-|.|.-.| +++.. .++.+ -.+.|||.+ . ..+++........++|.|..=
T Consensus 84 aD~d~Gyg---~~~~v~~~v~~l~~-aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aR 159 (295)
T 1s2w_A 84 LDADTGYG---NFNNARRLVRKLED-RGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVAR 159 (295)
T ss_dssp EECCSSCS---SHHHHHHHHHHHHH-TTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEE
T ss_pred ecCCCCCC---CHHHHHHHHHHHHH-cCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEe
Confidence 89985433 33333 33332 679999977 2 122222222223577877654
Q ss_pred Chhh---------H---HHHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711 142 SAGY---------L---LSGLLVGCAGGINALSAVLGGPICELYDLAK 177 (198)
Q Consensus 142 ~d~~---------~---~~~l~~G~~G~is~~~n~~P~~~~~l~~~~~ 177 (198)
.|.. + .....+|+++++.-..---++.+.++.+.+.
T Consensus 160 tda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 160 VEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWN 207 (295)
T ss_dssp ECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHT
T ss_pred ehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcC
Confidence 3432 1 1224689999876421112577778877765
No 76
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=95.68 E-value=0.15 Score=40.51 Aligned_cols=101 Identities=9% Similarity=0.037 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC----CCcCCC---CCHHHHHHHHHHHHccC
Q psy9711 10 EEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP----YYFQKK---MTEDLIYEHFISVADNS 82 (198)
Q Consensus 10 ~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P----~y~~~~---~~~~~i~~y~~~i~~~~ 82 (198)
.++..-++...+..+.-++.++.+..+ ++.++++|+|++++..- .+..|+ .|-+++..|-+.|++.+
T Consensus 6 ~~~~~~lr~l~~~~~~i~~~~ayD~~s------A~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~ 79 (255)
T 2qiw_A 6 KSLATKFASDHESGKLLVLPTVWDTWS------AGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV 79 (255)
T ss_dssp HHHHHHHHHHHHTCCCEECCEESSHHH------HHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhCCCcEEEecCcCHHH------HHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC
Confidence 344444555544323334557776544 44566789999999841 122222 46999999999999999
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
++| ++-|.|.-.|... .++..++.+ -.+.|||.+
T Consensus 80 ~~p-viaD~~~Gyg~~~-~~~~~~l~~-aGa~gv~iE 113 (255)
T 2qiw_A 80 SIP-VSVDVESGYGLSP-ADLIAQILE-AGAVGINVE 113 (255)
T ss_dssp SSC-EEEECTTCTTCCH-HHHHHHHHH-TTCCEEEEC
T ss_pred CCC-EEeccCCCcCcHH-HHHHHHHHH-cCCcEEEEC
Confidence 998 5668886555455 778888887 789999988
No 77
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=95.63 E-value=0.61 Score=37.36 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=95.5
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC----CCcCCC---CCHHHHHHHHHHHH
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP----YYFQKK---MTEDLIYEHFISVA 79 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P----~y~~~~---~~~~~i~~y~~~i~ 79 (198)
||..++.+-++...+. + -++.++-+..+ ++.++++|++++.+..- .+..|+ .|-+++..|-+.|+
T Consensus 1 m~~~~~~~~lr~l~~~-~-i~~~~a~D~~s------A~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~ 72 (275)
T 2ze3_A 1 MTHADHARSFHALHQT-G-FLLPNAWDVAS------ARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIV 72 (275)
T ss_dssp CHHHHHHHHHHHHHHH-C-EEECEESSHHH------HHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhC-C-eeEecccCHHH------HHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 3455666556666554 5 55667766544 44555679999998831 122222 46999999999999
Q ss_pred ccCCCCEEEEeCCCCcccccCHH----HHHHHHcCCCEEEEeeC--C-------------HHHHHHHHhhc--CCCCeEE
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVD----TLVKLAHHENIRGVKDT--D-------------NIKLANMANQT--KDLNFSV 138 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~----~l~~L~~~p~i~giK~s--d-------------~~~~~~~~~~~--~~~~~~v 138 (198)
+.+++| ++-|.| +|+.-+++ +..++.+ -.+.|+|.+ . ..+++...... .+.+|.|
T Consensus 73 ~~~~~p-viaD~d--~Gyg~~~~~~~~~v~~l~~-aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i 148 (275)
T 2ze3_A 73 RAVAIP-VNADIE--AGYGHAPEDVRRTVEHFAA-LGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFL 148 (275)
T ss_dssp HHCSSC-EEEECT--TCSSSSHHHHHHHHHHHHH-TTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEE
T ss_pred hhcCCC-EEeecC--CCCCCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEE
Confidence 999999 667887 45554554 4444554 789999988 3 13444433211 1567877
Q ss_pred EecChhh---------------HH---HHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711 139 FAGSAGY---------------LL---SGLLVGCAGGINALSAVLGGPICELYDLA 176 (198)
Q Consensus 139 ~~G~d~~---------------~~---~~l~~G~~G~is~~~n~~P~~~~~l~~~~ 176 (198)
..=.|.. +- ....+|+++++.-.- --++.+.++.+++
T Consensus 149 ~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~-~~~~~~~~i~~~~ 203 (275)
T 2ze3_A 149 NARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA-LQSQDIRALADAL 203 (275)
T ss_dssp EEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC-CCHHHHHHHHHHC
T ss_pred EEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC-CCHHHHHHHHHhc
Confidence 6544431 11 123579998875441 1236666666654
No 78
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=95.54 E-value=0.26 Score=39.18 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC---CCCEEEEeCCCCccccc----CHHHHHH---HHc
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS---PIPVIIYNNTFVTNIDI----SVDTLVK---LAH 109 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~---~~pi~lYn~P~~tg~~l----~~~~l~~---L~~ 109 (198)
+..++.|.+.||+.+.+.-. +-.. +.+++++..+++.+.+ ++|+++-..+ -|..+ +++.+.+ ++.
T Consensus 95 ~~~ve~Ai~~Ga~~v~~~~n-ig~~--~~~~~~~~~~~v~~~~~~~~~~vIi~~~~--~G~~~~~~~s~~~i~~a~~~a~ 169 (263)
T 1w8s_A 95 NCSVEEAVSLGASAVGYTIY-PGSG--FEWKMFEELARIKRDAVKFDLPLVVESFP--RGGKVVNETAPEIVAYAARIAL 169 (263)
T ss_dssp SSCHHHHHHTTCSEEEEEEC-TTST--THHHHHHHHHHHHHHHHHHTCCEEEEECC--CSTTCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEe-cCCc--CHHHHHHHHHHHHHHHHHcCCeEEEEeeC--CCCccccCCCHHHHHHHHHHHH
Confidence 45677888999999988532 2223 3777888888877655 7999886554 24343 6776654 442
Q ss_pred C--CCEEEEeeC-CHHHHHHHHhhcCCC-CeEEEecCh--h------hHHHHhhcCCCeEEeccc
Q psy9711 110 H--ENIRGVKDT-DNIKLANMANQTKDL-NFSVFAGSA--G------YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 110 ~--p~i~giK~s-d~~~~~~~~~~~~~~-~~~v~~G~d--~------~~~~~l~~G~~G~is~~~ 162 (198)
- ..++++..+ +++.++.+.+ ..+. .+....|.. . ++...+..|++|...+-+
T Consensus 170 ~~GAD~vkt~~~~~~e~~~~~~~-~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgra 233 (263)
T 1w8s_A 170 ELGADAMKIKYTGDPKTFSWAVK-VAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRN 233 (263)
T ss_dssp HHTCSEEEEECCSSHHHHHHHHH-HTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred HcCCCEEEEcCCCCHHHHHHHHH-hCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehh
Confidence 2 455555544 7778777663 3333 455555543 1 444556899998887764
No 79
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=95.53 E-value=0.17 Score=41.81 Aligned_cols=115 Identities=5% Similarity=0.030 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHhc----CCeEEEeCCC-------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET----KKTIIAGTYC-------ESTRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIYEH 74 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~----~~pvi~gv~~-------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i~~y 74 (198)
|.+.|.+++..+++++ +.||.+=++. .+.++.+++++.++++|+|.+-+....+.... ..+.--.++
T Consensus 189 slenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~ 268 (340)
T 3gr7_A 189 SPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPF 268 (340)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHH
Confidence 4667765554444444 7788775543 35789999999999999999999854432210 012223456
Q ss_pred HHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 75 FISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 75 ~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
.+.|.+.+++||+. .|.--+++...++.+.. ..|++=-. |+....++.
T Consensus 269 ~~~ik~~~~iPVi~------~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~ 321 (340)
T 3gr7_A 269 AELIRREADIPTGA------VGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAA 321 (340)
T ss_dssp HHHHHHHTTCCEEE------ESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred HHHHHHHcCCcEEe------eCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHH
Confidence 67788888999886 34344788888887543 45555444 766666655
No 80
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=95.52 E-value=0.2 Score=41.30 Aligned_cols=114 Identities=7% Similarity=0.035 Sum_probs=74.9
Q ss_pred CHHHHHH----HHHHHHHhcCCeEEEeCCC-------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC---CCCCHHHHHH
Q psy9711 8 TEEEKLK----IISTLRQETKKTIIAGTYC-------ESTRATIDLTQKAAKAGANAALILCPYYFQ---KKMTEDLIYE 73 (198)
Q Consensus 8 t~~Er~~----l~~~~~~~~~~pvi~gv~~-------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~---~~~~~~~i~~ 73 (198)
|.+.|.+ +++.++++++.||.+=++. .+.++++++++.+++.|+|.+-+....+.. +. .+..-.+
T Consensus 189 slenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~-~~~~~~~ 267 (338)
T 1z41_A 189 SPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINV-FPGYQVS 267 (338)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCC-CTTTTHH
T ss_pred chhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCC-CccchHH
Confidence 3466644 4444444447788775543 468899999999999999999998764421 11 1212245
Q ss_pred HHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711 74 HFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 74 y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~ 128 (198)
+.+.|.+.+++||+. .|.--+++...++.+. -..+++=-. |+....++.
T Consensus 268 ~~~~ir~~~~iPVi~------~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~ 321 (338)
T 1z41_A 268 FAEKIREQADMATGA------VGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAA 321 (338)
T ss_dssp HHHHHHHHHCCEEEE------CSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred HHHHHHHHCCCCEEE------ECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHH
Confidence 667777777899886 3434478888888854 456665544 776666665
No 81
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=95.41 E-value=0.1 Score=41.46 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccC-CCCEEE--EeC
Q psy9711 31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNS-PIPVII--YNN 91 (198)
Q Consensus 31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~-~~pi~l--Yn~ 91 (198)
.|.++.+++++.++...+.|+|.+-+..|+..+.. .+-+.+.+..+++.+.+ ++|+++ |.+
T Consensus 25 ~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n 104 (262)
T 2ekc_A 25 VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYN 104 (262)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHH
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCc
Confidence 78899999999999999999999999999853210 12345567788888788 899999 666
Q ss_pred C
Q psy9711 92 T 92 (198)
Q Consensus 92 P 92 (198)
|
T Consensus 105 ~ 105 (262)
T 2ekc_A 105 P 105 (262)
T ss_dssp H
T ss_pred H
Confidence 5
No 82
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=95.41 E-value=0.081 Score=42.49 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=67.7
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN 96 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg 96 (198)
+.-++.++.+.. .|+.++++|+|++++..-. +..++ .|-++++.|-+.|++.++.|+++=|.|. .+
T Consensus 17 ~~i~~~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pf-gs 89 (275)
T 1o66_A 17 EKIAMLTAYESS------FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPF-GA 89 (275)
T ss_dssp CCEEEEECCSHH------HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCT-TS
T ss_pred CcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCC-CC
Confidence 344566777643 3566778999999874211 11111 3599999999999999999999899995 45
Q ss_pred cccCHHHHH----HHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711 97 IDISVDTLV----KLAHHENIRGVKDT-D---NIKLANMA 128 (198)
Q Consensus 97 ~~l~~~~l~----~L~~~p~i~giK~s-d---~~~~~~~~ 128 (198)
+..+++... +|.+ -...|+|.+ . ..+++.+.
T Consensus 90 y~~s~~~a~~na~rl~k-aGa~aVklEdg~e~~~~I~al~ 128 (275)
T 1o66_A 90 YQQSKEQAFAAAAELMA-AGAHMVKLEGGVWMAETTEFLQ 128 (275)
T ss_dssp SSSCHHHHHHHHHHHHH-TTCSEEEEECSGGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH-cCCcEEEECCcHHHHHHHHHHH
Confidence 556665443 5667 889999987 2 35555554
No 83
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=95.38 E-value=0.72 Score=35.90 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCeEEEeCC-----C--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 15 IISTLRQETKKTIIAGTY-----C--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~-----~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
.++.+.+.+++||+ |+. + .-.....+.++.+.++|||.+++.......|. +.+++++++++. +++++
T Consensus 60 ~i~~ir~~v~~Pvi-g~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~-~l~~~i~~~~~~----g~~v~ 133 (232)
T 3igs_A 60 NLRMTRSLVSVPII-GIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPV-AVEALLARIHHH----HLLTM 133 (232)
T ss_dssp HHHHHHTTCCSCEE-EECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSS-CHHHHHHHHHHT----TCEEE
T ss_pred HHHHHHHhcCCCEE-EEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHH-HHHHHHHHHHHC----CCEEE
Confidence 45555555588985 321 1 11122455677788999999988765433332 356666666653 66666
Q ss_pred EEeCCCCcccccCHHHHHHHHcC-CCEEEE---------eeC--CHHHHHHHHhhcCCCCeEEE--ecC--hhhHHHHhh
Q psy9711 88 IYNNTFVTNIDISVDTLVKLAHH-ENIRGV---------KDT--DNIKLANMANQTKDLNFSVF--AGS--AGYLLSGLL 151 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi---------K~s--d~~~~~~~~~~~~~~~~~v~--~G~--d~~~~~~l~ 151 (198)
. +. -+.+...+..+. ..++|+ |.. ++..+.++. +. ++.++ .|- ...+...+.
T Consensus 134 ~-~v-------~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~-~~---~ipvIA~GGI~t~~d~~~~~~ 201 (232)
T 3igs_A 134 A-DC-------SSVDDGLACQRLGADIIGTTMSGYTTPDTPEEPDLPLVKALH-DA---GCRVIAEGRYNSPALAAEAIR 201 (232)
T ss_dssp E-EC-------CSHHHHHHHHHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHH-HT---TCCEEEESCCCSHHHHHHHHH
T ss_pred E-eC-------CCHHHHHHHHhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHH-hc---CCcEEEECCCCCHHHHHHHHH
Confidence 4 21 245666666653 455553 222 667777665 32 33343 343 245667788
Q ss_pred cCCCeEEecccccchHHHHH
Q psy9711 152 VGCAGGINALSAVLGGPICE 171 (198)
Q Consensus 152 ~G~~G~is~~~n~~P~~~~~ 171 (198)
.|++|++-|.+-.-|+...+
T Consensus 202 ~GadgV~VGsal~~p~~~~~ 221 (232)
T 3igs_A 202 YGAWAVTVGSAITRLEHICG 221 (232)
T ss_dssp TTCSEEEECHHHHCHHHHHH
T ss_pred cCCCEEEEehHhcCHHHHHH
Confidence 99999999977555654433
No 84
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=95.34 E-value=0.29 Score=38.32 Aligned_cols=153 Identities=13% Similarity=0.140 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
+...-.+.++.+.++. + +++|.|+-- +.+.++.|.++||+.++. |. . ..++.++-++ .++|+
T Consensus 68 ~t~~a~e~I~~l~~~~~~--~~iGaGTVl---t~~~a~~Ai~AGA~fIvs--P~----~--~~~vi~~~~~----~gi~~ 130 (232)
T 4e38_A 68 RSDAAVEAIRLLRQAQPE--MLIGAGTIL---NGEQALAAKEAGATFVVS--PG----F--NPNTVRACQE----IGIDI 130 (232)
T ss_dssp TSTTHHHHHHHHHHHCTT--CEEEEECCC---SHHHHHHHHHHTCSEEEC--SS----C--CHHHHHHHHH----HTCEE
T ss_pred CCCCHHHHHHHHHHhCCC--CEEeECCcC---CHHHHHHHHHcCCCEEEe--CC----C--CHHHHHHHHH----cCCCE
Confidence 3344567777777665 4 345655433 378888999999998863 43 1 5566666333 36776
Q ss_pred EEEeCCCCcccccCHHHHHHHHcC-CCEEEEeeCC----HHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCeEE
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAHH-ENIRGVKDTD----NIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAGGI 158 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK~sd----~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G~i 158 (198)
+. |.. +++.+.+-.+. ..++.+=-++ +..+..+. ... +++.++ .|-+ +.+...+..|+.+++
T Consensus 131 ip-------Gv~-TptEi~~A~~~Gad~vK~FPa~~~gG~~~lkal~-~p~-p~ip~~ptGGI~~~n~~~~l~aGa~~~v 200 (232)
T 4e38_A 131 VP-------GVN-NPSTVEAALEMGLTTLKFFPAEASGGISMVKSLV-GPY-GDIRLMPTGGITPSNIDNYLAIPQVLAC 200 (232)
T ss_dssp EC-------EEC-SHHHHHHHHHTTCCEEEECSTTTTTHHHHHHHHH-TTC-TTCEEEEBSSCCTTTHHHHHTSTTBCCE
T ss_pred Ec-------CCC-CHHHHHHHHHcCCCEEEECcCccccCHHHHHHHH-HHh-cCCCeeeEcCCCHHHHHHHHHCCCeEEE
Confidence 54 333 56555544443 3444432222 34444443 222 455544 3443 357788899999877
Q ss_pred ecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhch
Q psy9711 159 NALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKP 194 (198)
Q Consensus 159 s~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l 194 (198)
.|. .+.|.. .+++|||++..++-+++..+
T Consensus 201 gGs-~l~~~~------~i~~~~~~~i~~~a~~~~~~ 229 (232)
T 4e38_A 201 GGT-WMVDKK------LVTNGEWDEIARLTREIVEQ 229 (232)
T ss_dssp EEC-GGGCHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred ECc-hhcChH------HhhcCCHHHHHHHHHHHHHH
Confidence 654 455543 33679998877766655443
No 85
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=95.27 E-value=0.13 Score=41.94 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhc---CCeEEEeC-------CCCcHH-HHHHH-HHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 9 EEEKLKIISTLRQET---KKTIIAGT-------YCESTR-ATIDL-TQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~---~~pvi~gv-------~~~~~~-~~i~~-a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
..|..+.++.+++++ ++|+++=+ +..... +.+.. ++.+.++|+|.+=+-+|.+...+ .+++.+..+
T Consensus 137 ~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~~~g~--~~~~~~vv~ 214 (304)
T 1to3_A 137 AQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGA--RSDLLTASQ 214 (304)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCSC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcCCCCC--HHHHHHHHH
Confidence 577778888888887 88876643 221222 44444 99999999998878777663233 788777777
Q ss_pred HHHccCCCC-EEE
Q psy9711 77 SVADNSPIP-VII 88 (198)
Q Consensus 77 ~i~~~~~~p-i~l 88 (198)
...+.+++| |++
T Consensus 215 ~~~~~~~~P~Vv~ 227 (304)
T 1to3_A 215 RLNGHINMPWVIL 227 (304)
T ss_dssp HHHHTCCSCEEEC
T ss_pred hccccCCCCeEEE
Confidence 776668999 665
No 86
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=95.24 E-value=0.18 Score=39.96 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCC--------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTY--------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEH 74 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~--------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y 74 (198)
+++.++..+.++.+++.+ ++|+++.++ ..+..+..+.++.+.+.|+|.+-+.+| .+ .+.
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~----~~------~~~ 193 (273)
T 2qjg_A 124 SDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT----GD------IDS 193 (273)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC----SS------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC----CC------HHH
Confidence 346677777777777776 888887652 134444445559999999998887643 22 356
Q ss_pred HHHHHccCCCCEEE
Q psy9711 75 FISVADNSPIPVII 88 (198)
Q Consensus 75 ~~~i~~~~~~pi~l 88 (198)
++++.+.+++|++.
T Consensus 194 l~~i~~~~~ipvva 207 (273)
T 2qjg_A 194 FRDVVKGCPAPVVV 207 (273)
T ss_dssp HHHHHHHCSSCEEE
T ss_pred HHHHHHhCCCCEEE
Confidence 77888788899988
No 87
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=95.20 E-value=0.15 Score=42.58 Aligned_cols=114 Identities=10% Similarity=0.036 Sum_probs=71.2
Q ss_pred CHHHHHHH----HHHHHHhc--CCeEEEeCCC--------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----CCCCHH
Q psy9711 8 TEEEKLKI----ISTLRQET--KKTIIAGTYC--------ESTRATIDLTQKAAKAGANAALILCPYYFQ----KKMTED 69 (198)
Q Consensus 8 t~~Er~~l----~~~~~~~~--~~pvi~gv~~--------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----~~~~~~ 69 (198)
|.+.|.++ ++.+++++ +.||.+=++. .+.++++++++.+++.|+|.+-+....+.. +. .+.
T Consensus 203 slenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~-~~~ 281 (363)
T 3l5l_A 203 SFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPW-GPA 281 (363)
T ss_dssp SHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCC-CTT
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCC-Ccc
Confidence 45667554 44444444 5677775542 467899999999999999999988643321 11 021
Q ss_pred HHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 70 LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 70 ~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
.-.++.+.|.+.+++||+. .|.--+++...++.+.. ..+++=-. |+....++.
T Consensus 282 ~~~~~~~~ir~~~~iPVi~------~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~ 339 (363)
T 3l5l_A 282 FMGPIAERVRREAKLPVTS------AWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAA 339 (363)
T ss_dssp TTHHHHHHHHHHHTCCEEE------CSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHH
T ss_pred hhHHHHHHHHHHcCCcEEE------eCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHHH
Confidence 2245666777777899886 34334788888887543 44554333 655555554
No 88
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=95.19 E-value=0.18 Score=41.88 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHhcCCeEEE----eCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCc---CCCC---CHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQETKKTIIA----GTYCE-STRATIDLTQKAAKAGANAALILCPYYF---QKKM---TEDLIYEHFI 76 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~----gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~---~~~~---~~~~i~~y~~ 76 (198)
..+--.++++.+++.+++||.+ |.... +.+++++.++.++++|+|++.+..-... .+.. .+..-.++.+
T Consensus 110 ~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~ 189 (350)
T 3b0p_A 110 DLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVH 189 (350)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHH
Confidence 4445556777776655889888 33222 2358899999999999999999864321 1100 0001246677
Q ss_pred HHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHH
Q psy9711 77 SVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMA 128 (198)
Q Consensus 77 ~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~ 128 (198)
.|.+.+ ++||+. .|--.+++...++.+ +..|+=.. |+..+.++.
T Consensus 190 ~ik~~~~~iPVia------nGgI~s~eda~~~l~--GaD~V~iGRa~l~~P~l~~~i~ 239 (350)
T 3b0p_A 190 RLKGDFPQLTFVT------NGGIRSLEEALFHLK--RVDGVMLGRAVYEDPFVLEEAD 239 (350)
T ss_dssp HHHHHCTTSEEEE------ESSCCSHHHHHHHHT--TSSEEEECHHHHHCGGGGTTHH
T ss_pred HHHHhCCCCeEEE------ECCcCCHHHHHHHHh--CCCEEEECHHHHhCcHHHHHHH
Confidence 888888 799876 344457888888776 35555444 554444443
No 89
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=95.18 E-value=0.37 Score=39.04 Aligned_cols=91 Identities=22% Similarity=0.178 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA 79 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~ 79 (198)
..+.+|..+-++.++++. +..|++=+.. ...+++++.++.++++|||++++-.+ ++ .+++ ++++
T Consensus 130 L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~----~~--~~~~----~~i~ 199 (295)
T 1xg4_A 130 IVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAI----TE--LAMY----RQFA 199 (295)
T ss_dssp BCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTC----CS--HHHH----HHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCC----CC--HHHH----HHHH
Confidence 467788888899999887 4445554432 23489999999999999999998654 33 5554 4455
Q ss_pred ccCCCCEEEEeCCC-CcccccCHHHHHHH
Q psy9711 80 DNSPIPVIIYNNTF-VTNIDISVDTLVKL 107 (198)
Q Consensus 80 ~~~~~pi~lYn~P~-~tg~~l~~~~l~~L 107 (198)
++.++|++. |.-. .....++.+.+.++
T Consensus 200 ~~~~iP~~~-N~~~~g~~p~~~~~eL~~~ 227 (295)
T 1xg4_A 200 DAVQVPILA-NITEFGATPLFTTDELRSA 227 (295)
T ss_dssp HHHCSCBEE-ECCSSSSSCCCCHHHHHHT
T ss_pred HHcCCCEEE-EecccCCCCCCCHHHHHHc
Confidence 555689765 4321 01124666655555
No 90
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=95.15 E-value=0.22 Score=41.95 Aligned_cols=124 Identities=13% Similarity=0.107 Sum_probs=76.4
Q ss_pred eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHH
Q psy9711 26 TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTL 104 (198)
Q Consensus 26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l 104 (198)
++.++++. .++..+.++.+.+.|+|++.+-.+. .. ++.+.+..+.+.+.+ ++||++- ...+++..
T Consensus 143 ~~~~~i~~--~~~~~~~a~~~~~~G~d~i~i~~~~---g~--~~~~~e~i~~ir~~~~~~pviv~-------~v~~~~~a 208 (404)
T 1eep_A 143 RVGAAVSI--DIDTIERVEELVKAHVDILVIDSAH---GH--STRIIELIKKIKTKYPNLDLIAG-------NIVTKEAA 208 (404)
T ss_dssp CCEEEECS--CTTHHHHHHHHHHTTCSEEEECCSC---CS--SHHHHHHHHHHHHHCTTCEEEEE-------EECSHHHH
T ss_pred eEEEEeCC--ChhHHHHHHHHHHCCCCEEEEeCCC---CC--hHHHHHHHHHHHHHCCCCeEEEc-------CCCcHHHH
Confidence 35666654 2346777888889999999884332 12 566777788888888 7999982 23467777
Q ss_pred HHHHcCCCEEEEee----------------C--CHHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccc
Q psy9711 105 VKLAHHENIRGVKD----------------T--DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 105 ~~L~~~p~i~giK~----------------s--d~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~ 162 (198)
.++.+.. +.+|+. . +...+..+.+.....++.|+. |.. .....++.+|++++..+.+
T Consensus 209 ~~a~~~G-ad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~ 287 (404)
T 1eep_A 209 LDLISVG-ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNL 287 (404)
T ss_dssp HHHHTTT-CSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHH
T ss_pred HHHHhcC-CCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHH
Confidence 7776542 333332 1 222223222111123566664 432 4577888999999998876
Q ss_pred cc
Q psy9711 163 AV 164 (198)
Q Consensus 163 n~ 164 (198)
.+
T Consensus 288 ~l 289 (404)
T 1eep_A 288 FA 289 (404)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 91
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=95.14 E-value=0.1 Score=41.64 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=67.3
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN 96 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg 96 (198)
+.-++.++.+.. .|+.++++|+|++++.... +..++ .|-++++.|-+.|++.++.|+++=|.|. .+
T Consensus 17 ~~i~~~tayD~~------sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pf-gs 89 (264)
T 1m3u_A 17 KRFATITAYDYS------FAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPF-MA 89 (264)
T ss_dssp CCEEEEECCSHH------HHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCT-TS
T ss_pred CcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCC-CC
Confidence 334566777643 4566778899999985321 11121 3589999999999999999998899996 34
Q ss_pred cccCHHHHH----HHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711 97 IDISVDTLV----KLAHHENIRGVKDT-D---NIKLANMA 128 (198)
Q Consensus 97 ~~l~~~~l~----~L~~~p~i~giK~s-d---~~~~~~~~ 128 (198)
+. +++... +|.+ -...|+|.+ . ..+++.+.
T Consensus 90 y~-~~~~a~~~a~rl~k-aGa~aVklEgg~e~~~~I~al~ 127 (264)
T 1m3u_A 90 YA-TPEQAFENAATVMR-AGANMVKIEGGEWLVETVQMLT 127 (264)
T ss_dssp SS-SHHHHHHHHHHHHH-TTCSEEECCCSGGGHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHH-cCCCEEEECCcHHHHHHHHHHH
Confidence 55 776444 5667 889999988 2 35555554
No 92
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=95.12 E-value=0.33 Score=38.14 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHccCC--------
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSP-------- 83 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~~~-------- 83 (198)
.++++.+.+..++||+++-+-.+.++ ++.+.+.|||++++....+.. .+ ++.+. ++++..+
T Consensus 63 ~~~i~~i~~~~~iPvi~~ggi~~~~~----i~~~~~~Gad~v~lg~~~~~~~~~--~~~~~----~~~~~~g~~~~~i~~ 132 (266)
T 2w6r_A 63 TEMIRFVRPLTTLPIIASGGAGKMEH----FLEAFLAGADKALAASVFHFREID--MRELK----EYLKKHGGSGQAVVV 132 (266)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSTHH----HHHHHHHTCSEEECCCCC--------CHHHH----HHCC----CCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHH----HHHHHHcCCcHhhhhHHHHhCCCC--HHHHH----HHHHHcCCCCCEEEE
Confidence 34555555555999999866555444 344556799999998776622 12 44443 3433322
Q ss_pred -CCE-------EEEeCCCCcccccCH-HHHHHHHcC-CCEEEE---e-e----C-CHHHHHHHHhhcCCCCeEEEecCh-
Q psy9711 84 -IPV-------IIYNNTFVTNIDISV-DTLVKLAHH-ENIRGV---K-D----T-DNIKLANMANQTKDLNFSVFAGSA- 143 (198)
Q Consensus 84 -~pi-------~lYn~P~~tg~~l~~-~~l~~L~~~-p~i~gi---K-~----s-d~~~~~~~~~~~~~~~~~v~~G~d- 143 (198)
+++ .++-.-.......++ +...++.+. ...+.+ + + . |+..+.++. +..+-.+..-.|-.
T Consensus 133 ~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~-~~~~ipvia~GGI~~ 211 (266)
T 2w6r_A 133 AIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR-PLTTLPIIASGGAGK 211 (266)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHG-GGCCSCEEEESCCCS
T ss_pred EEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHH-HHcCCCEEEeCCCCC
Confidence 111 111110000011333 444555543 344443 2 1 1 566666665 33333333333333
Q ss_pred -hhHHHHhhcCCCeEEecccccchH-HHHHHHHHHHcC
Q psy9711 144 -GYLLSGLLVGCAGGINALSAVLGG-PICELYDLAKAG 179 (198)
Q Consensus 144 -~~~~~~l~~G~~G~is~~~n~~P~-~~~~l~~~~~~g 179 (198)
+.+...+..|++|++.+.+-+..+ ...++.+.+.+.
T Consensus 212 ~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~~ 249 (266)
T 2w6r_A 212 MEHFLEAFLAGADAALAASVFHFREIDMRELKEYLKKH 249 (266)
T ss_dssp HHHHHHHHHHTCSEEEESTTTC----------------
T ss_pred HHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHHHHHC
Confidence 345566678999999998755433 444554444443
No 93
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=95.10 E-value=1.2 Score=36.78 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=87.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhc---CCCEEEEc--CCCCc---CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKA---GANAALIL--CPYYF---QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~---Gad~v~~~--~P~y~---~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t 95 (198)
++||+++++..+.++.++.++.+++. ++|++-+- .|..- ....+++.+.+..+.+.+.++.|+.+--.|..+
T Consensus 126 ~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~ 205 (354)
T 3tjx_A 126 KKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFD 205 (354)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCS
T ss_pred CceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHhhcccccccCCCCC
Confidence 78999999999998888877776654 78876553 34321 111236778888888989999999998887643
Q ss_pred ccccCHHHHHHHH-cCCCEEEEe----------------------------eC---CHHHHHHHH---hhcCCCCeEEE-
Q psy9711 96 NIDISVDTLVKLA-HHENIRGVK----------------------------DT---DNIKLANMA---NQTKDLNFSVF- 139 (198)
Q Consensus 96 g~~l~~~~l~~L~-~~p~i~giK----------------------------~s---d~~~~~~~~---~~~~~~~~~v~- 139 (198)
. ..++...+.. +.....++. .| ......+++ .+.. +++.|+
T Consensus 206 ~--~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~-~~~pIIg 282 (354)
T 3tjx_A 206 F--AAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC-PGKLIFG 282 (354)
T ss_dssp H--HHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC-TTSEEEE
T ss_pred c--hhHHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhc-CCCcEEE
Confidence 2 2333343333 443332221 11 111112222 1222 334333
Q ss_pred ec-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 140 AG-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 140 ~G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
+| -. ......+.+|++.+..+++.++ |.++.+|.+.+
T Consensus 283 ~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L 324 (354)
T 3tjx_A 283 CGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSEL 324 (354)
T ss_dssp ESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHH
T ss_pred eCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHH
Confidence 33 22 2356778899999998887543 77777776543
No 94
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=95.09 E-value=0.88 Score=35.32 Aligned_cols=142 Identities=11% Similarity=0.083 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCeEEEeCC----C--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 15 IISTLRQETKKTIIAGTY----C--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~----~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
-++.+.+.+++||+.-.- + .-.....+.++.+.++|||.+++....-..|. +.+++++++++. +++++.
T Consensus 60 ~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~-~l~~~i~~~~~~----g~~v~~ 134 (229)
T 3q58_A 60 NLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPV-DIDSLLTRIRLH----GLLAMA 134 (229)
T ss_dssp HHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSS-CHHHHHHHHHHT----TCEEEE
T ss_pred HHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChH-HHHHHHHHHHHC----CCEEEE
Confidence 345555555889873221 0 11122455677788999999988765433332 256666666553 676664
Q ss_pred EeCCCCcccccCHHHHHHHHcC-CCEEEEe---------e-C-CHHHHHHHHhhcCCCCeEEE--ecC--hhhHHHHhhc
Q psy9711 89 YNNTFVTNIDISVDTLVKLAHH-ENIRGVK---------D-T-DNIKLANMANQTKDLNFSVF--AGS--AGYLLSGLLV 152 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~~~-p~i~giK---------~-s-d~~~~~~~~~~~~~~~~~v~--~G~--d~~~~~~l~~ 152 (198)
+. -+.+...+..+. ..++|+. . . ++..+.++. +. ++.++ .|- .+.+...+..
T Consensus 135 -~v-------~t~eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~-~~---~ipvIA~GGI~t~~d~~~~~~~ 202 (229)
T 3q58_A 135 -DC-------STVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLS-HA---GCRVIAEGRYNTPALAANAIEH 202 (229)
T ss_dssp -EC-------SSHHHHHHHHHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHH-TT---TCCEEEESSCCSHHHHHHHHHT
T ss_pred -ec-------CCHHHHHHHHhCCCCEEEecCccCCCCCcCCCCCHHHHHHHH-Hc---CCCEEEECCCCCHHHHHHHHHc
Confidence 21 245666666553 3555532 2 2 666666665 22 34444 333 2456677889
Q ss_pred CCCeEEecccccchHHHHHHH
Q psy9711 153 GCAGGINALSAVLGGPICELY 173 (198)
Q Consensus 153 G~~G~is~~~n~~P~~~~~l~ 173 (198)
|++|++-|.+-.-|+...+-|
T Consensus 203 GadgV~VGsai~~p~~~~~~f 223 (229)
T 3q58_A 203 GAWAVTVGSAITRIEHICQWF 223 (229)
T ss_dssp TCSEEEECHHHHCHHHHHHHH
T ss_pred CCCEEEEchHhcChHHHHHHH
Confidence 999999997766665544433
No 95
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=94.95 E-value=0.2 Score=41.74 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=71.3
Q ss_pred HHHHHHH----HHHHHHhc-CCeEEEeCC-----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 9 EEEKLKI----ISTLRQET-KKTIIAGTY-----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 9 ~~Er~~l----~~~~~~~~-~~pvi~gv~-----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
.+.|.++ ++.+++++ .-||.+=++ ..+.++++++++.+++.|+|.+-+..+.+......+ .
T Consensus 207 lenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~---~ 283 (364)
T 1vyr_A 207 VENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYS---E 283 (364)
T ss_dssp HHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCC---H
T ss_pred hhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCccc---H
Confidence 4566554 55555555 237777222 225678999999999999999999876543211012 2
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
++.+.|.+.+++||+.= .| ++++...++.+.. .++++=-. |+....++.
T Consensus 284 ~~~~~v~~~~~iPvi~~-----Gg--it~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~ 337 (364)
T 1vyr_A 284 AFRQKVRERFHGVIIGA-----GA--YTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ 337 (364)
T ss_dssp HHHHHHHHHCCSEEEEE-----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHCCCCEEEE-----CC--cCHHHHHHHHHCCCccEEEECHHHHhChhHHHHHH
Confidence 46677888889998862 23 3899999888654 45555443 776666665
No 96
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=94.93 E-value=0.075 Score=42.70 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCC-----------------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYC-----------------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE 73 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~-----------------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~ 73 (198)
|..+.++.+++. ++||+.++|= ...+++++.++.++++||+++++-.. | . +
T Consensus 119 e~~~~I~al~~a-gIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----p---~-~--- 186 (275)
T 1o66_A 119 WMAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECV----L---A-E--- 186 (275)
T ss_dssp GGHHHHHHHHHT-TCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEESC----C---H-H---
T ss_pred HHHHHHHHHHHc-CCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecC----C---H-H---
Confidence 445566666654 8999865541 12478999999999999999998642 1 2 2
Q ss_pred HHHHHHccCCCCEEEEeC-CCCcccccCHHHHHHHH
Q psy9711 74 HFISVADNSPIPVIIYNN-TFVTNIDISVDTLVKLA 108 (198)
Q Consensus 74 y~~~i~~~~~~pi~lYn~-P~~tg~~l~~~~l~~L~ 108 (198)
-.++|++++++|++---. |...|..|=...+.-|.
T Consensus 187 ~a~~it~~l~iP~igIGaG~~~dgQvLV~~D~lG~~ 222 (275)
T 1o66_A 187 LAKKVTETVSCPTIGIGAGADCDGQVLVMHDMLGIF 222 (275)
T ss_dssp HHHHHHHHCSSCEEEESSCSCSSEEEECHHHHTTCS
T ss_pred HHHHHHHhCCCCEEEECCCCCCCcceeeHHhhcCCC
Confidence 256889999999998764 55567777666665554
No 97
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=94.81 E-value=1.2 Score=35.47 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHHHHh-cCCeEEEeCCCCcHH--HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQE-TKKTIIAGTYCESTR--ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~-~~~pvi~gv~~~~~~--~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+|.+.-.++++.+.+. .++|++.=+..+..- -.-+.++.++++|+|++++.. .. .++. +-|...+++.+
T Consensus 77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~D-----lp--~ee~-~~~~~~~~~~g 148 (267)
T 3vnd_A 77 TTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIAD-----VP--VEES-APFSKAAKAHG 148 (267)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETT-----SC--GGGC-HHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCC-----CC--HhhH-HHHHHHHHHcC
Confidence 4556667888888877 388976533332211 235688999999999999841 11 3343 44555666778
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc-CCCEEEE---------eeC---CHHHHHHHHhhcCCCCeEEEecCh----hhH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIRGV---------KDT---DNIKLANMANQTKDLNFSVFAGSA----GYL 146 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~gi---------K~s---d~~~~~~~~~~~~~~~~~v~~G~d----~~~ 146 (198)
+..+..=.|. -+.+.+.++++ .+.++.+ ... +...+.+.+++.. +..+..|.+ +..
T Consensus 149 l~~i~liaP~-----t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~--~~pv~vGfGI~~~e~~ 221 (267)
T 3vnd_A 149 IAPIFIAPPN-----ADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN--APPPLLGFGIAEPEQV 221 (267)
T ss_dssp CEEECEECTT-----CCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT--CCCEEECSSCCSHHHH
T ss_pred CeEEEEECCC-----CCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc--CCCEEEECCcCCHHHH
Confidence 7766555664 24677777774 3444444 221 2222222232333 344555543 234
Q ss_pred HHHhhcCCCeEEeccc
Q psy9711 147 LSGLLVGCAGGINALS 162 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~ 162 (198)
...+..|+||+|.|.+
T Consensus 222 ~~~~~~gADgvVVGSa 237 (267)
T 3vnd_A 222 RAAIKAGAAGAISGSA 237 (267)
T ss_dssp HHHHHTTCSEEEECHH
T ss_pred HHHHHcCCCEEEECHH
Confidence 3378899999999974
No 98
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=94.79 E-value=0.44 Score=37.91 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=42.0
Q ss_pred CeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCC------CCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 25 KTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCP------YYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 25 ~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P------~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
.-||+|..+ .+.+.++++++.++++|++.|..... |-++.. .++-.+..+++++..++|++
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~--~~egl~~l~~~~~~~Gl~~~ 91 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGY--GEKALRWMREAADEYGLVTV 91 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCC--THHHHHHHHHHHHHHTCEEE
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCc--cHHHHHHHHHHHHHcCCcEE
Confidence 347788643 36889999999999999999887742 111111 15556667777777777776
No 99
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=94.76 E-value=0.28 Score=39.61 Aligned_cols=52 Identities=6% Similarity=-0.214 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
+.+...++++.+++.+++||++=++. .+.++..+.++.++++|+|++.+..-
T Consensus 142 ~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 142 DFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNS 194 (311)
T ss_dssp CHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence 66777888888877668899886543 35667888899999999999988653
No 100
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=94.74 E-value=0.51 Score=37.39 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=77.3
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCcHHH--HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET-KKTIIAGTYCESTRA--TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv~~~~~~~--~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
.+++.+.+.- ++|++.=...+..-. .=+.++.++++|+|++++.. .| .++ .+-|+..+++.++..+..=
T Consensus 77 ~~~~~~~~~r~~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipD----LP---~eE-~~~~~~~~~~~Gl~~I~lv 148 (252)
T 3tha_A 77 SVFELLARIKTKKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPE----LS---FEE-SDDLIKECERYNIALITLV 148 (252)
T ss_dssp HHHHHHHHCCCSSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTT----CC---GGG-CHHHHHHHHHTTCEECEEE
T ss_pred HHHHHHHHHhcCCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCC----CC---HHH-HHHHHHHHHHcCCeEEEEe
Confidence 3444443332 579877566544322 35588999999999999853 11 333 3557777888888766555
Q ss_pred CCCCcccccCHHHHHHHHcC-CCEEEEee----C--C---HHHHHHH---HhhcCCCCeEEEecCh---hhHHHHhhcCC
Q psy9711 91 NTFVTNIDISVDTLVKLAHH-ENIRGVKD----T--D---NIKLANM---ANQTKDLNFSVFAGSA---GYLLSGLLVGC 154 (198)
Q Consensus 91 ~P~~tg~~l~~~~l~~L~~~-p~i~giK~----s--d---~~~~~~~---~~~~~~~~~~v~~G~d---~~~~~~l~~G~ 154 (198)
.|. -+.+.++++++. +.++.+=- + . ...+.++ +++.. +..+..|.+ .--...+..++
T Consensus 149 aP~-----t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGfGIst~e~a~~~~~~A 221 (252)
T 3tha_A 149 SVT-----TPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT--NLPIFVGFGIQNNQDVKRMRKVA 221 (252)
T ss_dssp ETT-----SCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC--CSCEEEESSCCSHHHHHHHTTTS
T ss_pred CCC-----CcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEcCcCCHHHHHHHHhcC
Confidence 553 246888888864 45554422 1 1 1112222 22232 344555543 12234455679
Q ss_pred CeEEeccc
Q psy9711 155 AGGINALS 162 (198)
Q Consensus 155 ~G~is~~~ 162 (198)
||+|.|.+
T Consensus 222 DGVIVGSA 229 (252)
T 3tha_A 222 DGVIVGTS 229 (252)
T ss_dssp SEEEECHH
T ss_pred CEEEECHH
Confidence 99999975
No 101
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=94.74 E-value=0.51 Score=36.33 Aligned_cols=143 Identities=9% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc-cC----CC-
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD-NS----PI- 84 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~-~~----~~- 84 (198)
...++++.+.+..++|++++-+-.+.++ ++.+.++|||++.+..+.+.. ++.+.+..+..-. .. +.
T Consensus 64 ~~~~~i~~i~~~~~ipvi~~g~i~~~~~----~~~~~~~Gad~V~i~~~~~~~----~~~~~~~~~~~g~~~i~~~~~~~ 135 (253)
T 1h5y_A 64 TFIDSVKRVAEAVSIPVLVGGGVRSLED----ATTLFRAGADKVSVNTAAVRN----PQLVALLAREFGSQSTVVAIDAK 135 (253)
T ss_dssp HHHHHHHHHHHHCSSCEEEESSCCSHHH----HHHHHHHTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEE
T ss_pred ccHHHHHHHHHhcCCCEEEECCCCCHHH----HHHHHHcCCCEEEEChHHhhC----cHHHHHHHHHcCCCcEEEEEEee
Confidence 3455666666655899998776655543 455666899999998665432 3333333333211 01 11
Q ss_pred ----CEEEEeCCCCcccccC-HHHHHHHHcC-CCEEEE--------eeC-CHHHHHHHHhhcCCCCeEEEecCh--hhHH
Q psy9711 85 ----PVIIYNNTFVTNIDIS-VDTLVKLAHH-ENIRGV--------KDT-DNIKLANMANQTKDLNFSVFAGSA--GYLL 147 (198)
Q Consensus 85 ----pi~lYn~P~~tg~~l~-~~~l~~L~~~-p~i~gi--------K~s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~ 147 (198)
++.++-.-.......+ .+.+.++.+. ...+.+ +.. ++..+.++.+ ..+-.+.+-.|-. +.+.
T Consensus 136 ~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~-~~~~pvia~GGi~~~~~~~ 214 (253)
T 1h5y_A 136 WNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVAD-SVRIPVIASGGAGRVEHFY 214 (253)
T ss_dssp ECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHH-HCSSCEEEESCCCSHHHHH
T ss_pred cCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHH-hcCCCEEEeCCCCCHHHHH
Confidence 0222221111001123 3445555543 344443 223 5666766653 3333343334433 3556
Q ss_pred HHhhcCCCeEEeccc
Q psy9711 148 SGLLVGCAGGINALS 162 (198)
Q Consensus 148 ~~l~~G~~G~is~~~ 162 (198)
..+..|++|++.|.+
T Consensus 215 ~~~~~Ga~~v~vgsa 229 (253)
T 1h5y_A 215 EAAAAGADAVLAASL 229 (253)
T ss_dssp HHHHTTCSEEEESHH
T ss_pred HHHHcCCcHHHHHHH
Confidence 667889999998875
No 102
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=94.73 E-value=0.14 Score=42.73 Aligned_cols=109 Identities=7% Similarity=-0.027 Sum_probs=70.8
Q ss_pred HHHHHHH----HHHHHHhcC-CeEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHH
Q psy9711 9 EEEKLKI----ISTLRQETK-KTIIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIY 72 (198)
Q Consensus 9 ~~Er~~l----~~~~~~~~~-~pvi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~ 72 (198)
.+.|.++ ++.++++++ -||.+=++. .+.++++++++.+++.|+|.+-+..+.+.. +. .+.
T Consensus 207 lenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~-~~~--- 282 (365)
T 2gou_A 207 LENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPD-TPV--- 282 (365)
T ss_dssp HHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCC-CCH---
T ss_pred hhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCC-ccH---
Confidence 4555444 455555442 288773332 356889999999999999999999875532 11 122
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
++.+.|.+.+++||+. ..|+ +++...++.+.. ..+++=-. |+....++.
T Consensus 283 ~~~~~i~~~~~iPvi~-----~Ggi--~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~ 336 (365)
T 2gou_A 283 SFKRALREAYQGVLIY-----AGRY--NAEKAEQAINDGLADMIGFGRPFIANPDLPERLR 336 (365)
T ss_dssp HHHHHHHHHCCSEEEE-----ESSC--CHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHCCCcEEE-----eCCC--CHHHHHHHHHCCCcceehhcHHHHhCchHHHHHH
Confidence 4567777788899876 2333 889998888644 45554433 766666655
No 103
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=94.70 E-value=0.98 Score=34.03 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=76.0
Q ss_pred HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-e
Q psy9711 13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-N 90 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n 90 (198)
.++++.+.+.. +.||.++.-.....+ ..++.+.++|+|++.+..- +. ++.+.+..+.+ +..++++++- .
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~--~~~~~~~~~Gad~v~v~~~----~~--~~~~~~~~~~~-~~~g~~~~v~~~ 111 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDGGH--FESQLLFDAGADYVTVLGV----TD--VLTIQSCIRAA-KEAGKQVVVDMI 111 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHH--HHHHHHHHTTCSEEEEETT----SC--HHHHHHHHHHH-HHHTCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccchH--HHHHHHHhcCCCEEEEeCC----CC--hhHHHHHHHHH-HHcCCeEEEEec
Confidence 45677777775 889988754333332 2378889999999999421 12 44444444433 4457777752 2
Q ss_pred CCCCcccccCHHHHHHHHcC-CCEEEEeeC---------CHHHHHHHHhhcCCCCeEE--EecCh-hhHHHHhhcCCCeE
Q psy9711 91 NTFVTNIDISVDTLVKLAHH-ENIRGVKDT---------DNIKLANMANQTKDLNFSV--FAGSA-GYLLSGLLVGCAGG 157 (198)
Q Consensus 91 ~P~~tg~~l~~~~l~~L~~~-p~i~giK~s---------d~~~~~~~~~~~~~~~~~v--~~G~d-~~~~~~l~~G~~G~ 157 (198)
.|. + +.+.+.++.+. ..++++-.. +...+.++. +.. +++.+ -.|-. +.....+..|++|+
T Consensus 112 ~~~-t----~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~-~~~-~~~~i~~~gGI~~~~~~~~~~~Gad~v 184 (211)
T 3f4w_A 112 CVD-D----LPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITML-KVR-RKARIAVAGGISSQTVKDYALLGPDVV 184 (211)
T ss_dssp TCS-S----HHHHHHHHHHHTCCEEEEECCHHHHHTTCCSHHHHHHHH-HHC-SSCEEEEESSCCTTTHHHHHTTCCSEE
T ss_pred CCC-C----HHHHHHHHHHcCCCEEEEcCCCcccccCCCCHHHHHHHH-HHc-CCCcEEEECCCCHHHHHHHHHcCCCEE
Confidence 232 1 23555666553 455555321 334555544 332 23333 33433 34556778999999
Q ss_pred Eeccc
Q psy9711 158 INALS 162 (198)
Q Consensus 158 is~~~ 162 (198)
+.|.+
T Consensus 185 vvGsa 189 (211)
T 3f4w_A 185 IVGSA 189 (211)
T ss_dssp EECHH
T ss_pred EECHH
Confidence 98865
No 104
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=94.61 E-value=1.3 Score=35.35 Aligned_cols=138 Identities=9% Similarity=0.049 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHH---HHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTR---ATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~---~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+|.+.-.++++.+.+...+||++= +-.+.- ..-+.++.+.++|+|++++.. . +.+++.++.+.+ ++.+
T Consensus 74 ~~~~~~~~~v~~ir~~~~~Pii~m-~y~n~v~~~g~~~f~~~~~~aG~dGviv~D-----l--~~ee~~~~~~~~-~~~g 144 (271)
T 1ujp_A 74 MSVQGALELVREVRALTEKPLFLM-TYLNPVLAWGPERFFGLFKQAGATGVILPD-----L--PPDEDPGLVRLA-QEIG 144 (271)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEE-CCHHHHHHHCHHHHHHHHHHHTCCEEECTT-----C--CGGGCHHHHHHH-HHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEE-ecCcHHHHhhHHHHHHHHHHcCCCEEEecC-----C--CHHHHHHHHHHH-HHcC
Confidence 344555677777776668898763 222221 235678888999999988852 1 134455555444 4556
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc-CCCEE---------EEeeC---C-HHHHHHHHhhcCCCCeEEEecCh---hhH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH-HENIR---------GVKDT---D-NIKLANMANQTKDLNFSVFAGSA---GYL 146 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~-~p~i~---------giK~s---d-~~~~~~~~~~~~~~~~~v~~G~d---~~~ 146 (198)
++.+..-.|. .+.+-+.++++ -..++ |.... + ...+.++. +.. +..|+.|.. .--
T Consensus 145 l~~i~liap~-----s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr-~~~--~~Pv~vGfGI~t~e~ 216 (271)
T 1ujp_A 145 LETVFLLAPT-----STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIK-ART--ALPVAVGFGVSGKAT 216 (271)
T ss_dssp CEEECEECTT-----CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHH-TTC--CSCEEEESCCCSHHH
T ss_pred CceEEEeCCC-----CCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHH-hhc--CCCEEEEcCCCCHHH
Confidence 6655433443 45677777774 33333 22222 2 23444443 333 444555533 223
Q ss_pred HHHhhcCCCeEEeccc
Q psy9711 147 LSGLLVGCAGGINALS 162 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~ 162 (198)
...+ .|+||+|.|.+
T Consensus 217 a~~~-~~ADgVIVGSA 231 (271)
T 1ujp_A 217 AAQA-AVADGVVVGSA 231 (271)
T ss_dssp HHHH-TTSSEEEECHH
T ss_pred HHHh-cCCCEEEEChH
Confidence 3446 99999999976
No 105
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=94.41 E-value=1.2 Score=36.50 Aligned_cols=127 Identities=13% Similarity=0.041 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHH----HHHHHHHHHHccCC-------CCEEEEeCCCCcccccCHHHHHHH
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTED----LIYEHFISVADNSP-------IPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~----~i~~y~~~i~~~~~-------~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
.++.++...++|+|++++..|.-...+ ++ -+..|++.|.+... .| ++|..- |. ...+..|
T Consensus 189 ~~~~~~~~~~aGad~i~i~d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~~~~~~~-ii~~~~---g~---~~~l~~l 259 (354)
T 3cyv_A 189 VTLYLNAQIKAGAQAVMIFDTWGGVLT--GRDYQQFSLYYMHKIVDGLLRENDGRRVP-VTLFTK---GG---GQWLEAM 259 (354)
T ss_dssp HHHHHHHHHHTTCSEEEEECTTGGGSC--HHHHHHHTHHHHHHHHHHSCSEETTEECC-EEEECT---TT---TTTHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCC--HHHHHHHhHHHHHHHHHHHHHhcCCCCCC-EEEECC---CH---HHHHHHH
Confidence 355666777899999999877533333 64 45567788888773 78 444432 22 2356677
Q ss_pred HcCC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhH------------HHHhh-cCC-CeEEeccccc-----ch
Q psy9711 108 AHHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYL------------LSGLL-VGC-AGGINALSAV-----LG 166 (198)
Q Consensus 108 ~~~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~------------~~~l~-~G~-~G~is~~~n~-----~P 166 (198)
++.+ .++++-.. |+....+.+ ++++.+..+.|..+ ...+. .|. .|+|-+.++= -|
T Consensus 260 ~~~g~d~i~~d~~~dl~~~~~~~----g~~~~l~Gn~dp~~l~~t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~ 335 (354)
T 3cyv_A 260 AETGCDALGLDWTTDIADARRRV----GNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVPP 335 (354)
T ss_dssp HTTSCSEEECCTTSCHHHHHHHH----TTTSEEECCBCGGGGGSCHHHHHHHHHHHHTTTTTSSCEEBCBSSCCCTTSCH
T ss_pred HhcCCCEEEeCCCCCHHHHHHHh----CCCeEEEecCChHHhCCCHHHHHHHHHHHHHHhCCCCCeEEecCCCCCCCCCH
Confidence 7764 78888434 888765543 34455554444311 11233 254 4788766643 36
Q ss_pred HHHHHHHHHHHc
Q psy9711 167 GPICELYDLAKA 178 (198)
Q Consensus 167 ~~~~~l~~~~~~ 178 (198)
+-+..+++++++
T Consensus 336 env~a~v~~v~~ 347 (354)
T 3cyv_A 336 EHAGVFVEAVHR 347 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776653
No 106
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=94.40 E-value=0.59 Score=37.47 Aligned_cols=63 Identities=24% Similarity=0.232 Sum_probs=43.9
Q ss_pred CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
+.-||+|.++. +.+.+++.++.++++|++++-.. .|+-++.. .++-++.++++++..++|++-
T Consensus 38 ~~~vIAgpc~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~--g~~gl~~l~~~~~~~Gl~~~t 107 (276)
T 1vs1_A 38 SKAVIAGPCSVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGL--GLEGLKLLRRAGDEAGLPVVT 107 (276)
T ss_dssp BCEEEEECSBCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCC--THHHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCC--CHHHHHHHHHHHHHcCCcEEE
Confidence 35688887655 67889999999999999986443 12212211 245567778888888888874
No 107
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=94.34 E-value=0.1 Score=42.01 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCCC-----------------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYCE-----------------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE 73 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~~-----------------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~ 73 (198)
|..+.++.+++. ++||+.++|-+ ..+++++.++.++++||+++++-.. | . +
T Consensus 137 e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----p---~-~--- 204 (281)
T 1oy0_A 137 RVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV----P---A-E--- 204 (281)
T ss_dssp GGHHHHHHHHHH-TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESC----C---H-H---
T ss_pred HHHHHHHHHHHC-CCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecC----C---H-H---
Confidence 445556666655 89988544321 2478899999999999999998642 1 2 2
Q ss_pred HHHHHHccCCCCEEEEeC-CCCcccccCHHHHHHHH
Q psy9711 74 HFISVADNSPIPVIIYNN-TFVTNIDISVDTLVKLA 108 (198)
Q Consensus 74 y~~~i~~~~~~pi~lYn~-P~~tg~~l~~~~l~~L~ 108 (198)
-.++|++++++|++---. |...|..|=...+.-|.
T Consensus 205 ~a~~it~~l~iP~igIGaG~~~dgQvLV~~D~lG~~ 240 (281)
T 1oy0_A 205 LATQITGKLTIPTVGIGAGPNCDGQVLVWQDMAGFS 240 (281)
T ss_dssp HHHHHHHHCSSCEEEESSCSCSSEEEECHHHHTTCS
T ss_pred HHHHHHHhCCCCEEEeCCCCCCCcceeeHhhhcCCC
Confidence 356889999999998754 55567777666555554
No 108
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=94.31 E-value=0.22 Score=39.31 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=77.5
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEeCCCC--------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQETKKTIIAGTYCE--------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~--------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
+..|+.++|.++++.+.+. +..|+.-+|.. ++.+-+++++..-++||+.|++-.-
T Consensus 108 ~i~l~~~~~~~~I~~~~~~-G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEar---------------- 170 (251)
T 1qwg_A 108 SSDISLEERNNAIKRAKDN-GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGR---------------- 170 (251)
T ss_dssp SSCCCHHHHHHHHHHHHHT-TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCT----------------
T ss_pred cccCCHHHHHHHHHHHHHC-CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeee----------------
Confidence 4579999999999999887 67777766654 4588899999999999999999642
Q ss_pred HHHHccCCCCEEEEeCCCCcccccCHHHHHHHH-cCCCEEEEeeC-CHHHHHHHHhhcCCCCeEEE-ecChh-hHHHHhh
Q psy9711 76 ISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-HHENIRGVKDT-DNIKLANMANQTKDLNFSVF-AGSAG-YLLSGLL 151 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~~p~i~giK~s-d~~~~~~~~~~~~~~~~~v~-~G~d~-~~~~~l~ 151 (198)
.++.-|-+|+.-+ ++-.+.+.+|. ++|-=.=|=+. +..+...+++ ..++++.+. ...++ .-+.++.
T Consensus 171 -----EsG~~iGi~~~~g----~~r~d~v~~i~~~l~~eklifEAp~k~qq~~fI~-~fG~~VNLgNI~~~eVi~LE~LR 240 (251)
T 1qwg_A 171 -----ESGKGKGLFDKEG----KVKENELDVLAKNVDINKVIFEAPQKSQQVAFIL-KFGSSVNLANIAFDEVISLETLR 240 (251)
T ss_dssp -----TTCCSSTTBCTTS----CBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHH-HHCTTCCEEEEEGGGHHHHHHHH
T ss_pred -----cccCCcccCCCCC----CCcHHHHHHHHHhCChhhEEEECCChHHHHHHHH-HhCCCccccCCCHHHHHHHHHHH
Confidence 3344444555321 34555666665 23211111122 5455445553 346666663 33333 3456666
Q ss_pred cCCCe
Q psy9711 152 VGCAG 156 (198)
Q Consensus 152 ~G~~G 156 (198)
.|..|
T Consensus 241 ~GLrg 245 (251)
T 1qwg_A 241 RGLRG 245 (251)
T ss_dssp HTCSG
T ss_pred ccccc
Confidence 66543
No 109
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=94.29 E-value=1.2 Score=37.06 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.++++.+++++ ++++.+-+ ++.+.+++++.++..++.|+ .+-.|.. + .+.++.|.+++++
T Consensus 171 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i---~iE~P~~---~------~~~~~~l~~~~~i 238 (379)
T 2rdx_A 171 DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY---ILEQPCR---S------YEECQQVRRVADQ 238 (379)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC---EEECCSS---S------HHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe---EEeCCcC---C------HHHHHHHHhhCCC
Confidence 3455677888888877 78887755 45578999999999999887 4455542 2 4677888888899
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
||+.= +.-.+++.+.++.+ .-+++.+|-+ .+....++
T Consensus 239 PI~~d------e~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 280 (379)
T 2rdx_A 239 PMKLD------ECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRT 280 (379)
T ss_dssp CEEEC------TTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHH
T ss_pred CEEEe------CCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHH
Confidence 99873 33357788888863 5789999998 55544444
No 110
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=94.26 E-value=1.3 Score=35.31 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=57.9
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----CC------------CCHHHHHHHHHHHHcc-CCCCEEE--
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ----KK------------MTEDLIYEHFISVADN-SPIPVII-- 88 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----~~------------~~~~~i~~y~~~i~~~-~~~pi~l-- 88 (198)
++-.|.++.+.+++.++...+.|||.+-+.-|+-.+ |. .+-+.+++..+++-+. .++|+++
T Consensus 25 yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~ 104 (271)
T 3nav_A 25 FVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLM 104 (271)
T ss_dssp EEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 345799999999999999999999999999987332 11 1123555666666655 6899976
Q ss_pred EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
|.+|-. ....+-+.+-+.--.+.|+--.
T Consensus 105 Y~n~v~---~~g~~~f~~~~~~aGvdGvIip 132 (271)
T 3nav_A 105 YANLVY---ARGIDDFYQRCQKAGVDSVLIA 132 (271)
T ss_dssp CHHHHH---HTCHHHHHHHHHHHTCCEEEET
T ss_pred cCcHHH---HHhHHHHHHHHHHCCCCEEEEC
Confidence 777732 1233444444432334554444
No 111
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=94.25 E-value=0.88 Score=37.86 Aligned_cols=126 Identities=17% Similarity=0.095 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHH----HHHHHHHHHccCC-------CCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDL----IYEHFISVADNSP-------IPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~----i~~y~~~i~~~~~-------~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
++.++...++|||++++.-+.-...+ ++. +.-|++.|.+... .|++++.. |. ...+..++
T Consensus 200 ~~y~~~qi~aGad~i~ifDs~~~~Ls--p~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~----g~---~~~l~~l~ 270 (368)
T 4exq_A 200 AAYLNAQIEAGAQAVMIFDTWGGALA--DGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTK----GG---GLWLEDLA 270 (368)
T ss_dssp HHHHHHHHHHTCSEEEEEETTGGGSC--TTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEET----TC---GGGHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCC--HHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcC----Cc---HHHHHHHH
Confidence 45556667899999998766533333 555 5567788888763 68876653 22 24566777
Q ss_pred cCC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHH------------HHhh-cC-CCeEEeccccc-----chH
Q psy9711 109 HHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLL------------SGLL-VG-CAGGINALSAV-----LGG 167 (198)
Q Consensus 109 ~~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~------------~~l~-~G-~~G~is~~~n~-----~P~ 167 (198)
+.+ +++++=.. |+....+.+ ++++.+..+.|..++ ..+. .| ..|+|-++++= -|+
T Consensus 271 ~~g~d~i~~d~~~dl~~ak~~~----g~~~~l~Gnldp~~L~gt~e~I~~~v~~~l~~~g~~~g~I~n~Ghgi~p~tp~E 346 (368)
T 4exq_A 271 ATGVDAVGLDWTVNLGRARERV----AGRVALQGNLDPTILFAPPEAIRAEARAVLDSYGNHPGHVFNLGHGISQFTPPE 346 (368)
T ss_dssp TSSCSEEECCTTSCHHHHHHHH----TTSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCSCSCEEEEESSCCCTTCCHH
T ss_pred HhCCCEEeeCCCCCHHHHHHHh----CCCEEEEECCCHHHhCCCHHHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCcCHH
Confidence 764 78888555 888776654 345555544443211 1122 24 36787666542 357
Q ss_pred HHHHHHHHHHc
Q psy9711 168 PICELYDLAKA 178 (198)
Q Consensus 168 ~~~~l~~~~~~ 178 (198)
-+..+++++++
T Consensus 347 nv~a~veav~~ 357 (368)
T 4exq_A 347 HVAELVDEVHR 357 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776653
No 112
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=94.23 E-value=0.34 Score=40.60 Aligned_cols=118 Identities=8% Similarity=0.076 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.++++.+++++ ++++.+-+ ++.+.+++++.++..++.|++.+ --|. .+. + .+.++.|.+++++|
T Consensus 177 ~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~iP 247 (391)
T 2qgy_A 177 LSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWI--EEPV--DGE--N---ISLLTEIKNTFNMK 247 (391)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEE--ECSS--CTT--C---HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE--eCCC--Chh--h---HHHHHHHHhhCCCC
Confidence 455667888888877 78888755 45578999999999999998854 4453 121 2 46677888888999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|+.= +.-.+++.+.++.+ .-+++-+|-+ .+....++.+....-++.+..|
T Consensus 248 Ia~d------E~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~~ 302 (391)
T 2qgy_A 248 VVTG------EKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIEISNEASNNGIFISPH 302 (391)
T ss_dssp EEEC------TTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHHHHHHHHHTTCEECCB
T ss_pred EEEc------CCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHHHHHHHHHCCCEEecc
Confidence 9873 33456888888884 4689999988 5554444432111234455444
No 113
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=94.21 E-value=0.97 Score=34.93 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=94.1
Q ss_pred CCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC-
Q psy9711 7 STEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI- 84 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~- 84 (198)
|+.+.-.+.++.+.++. . +++|+|+-- +.+.++.+.++|++.++. |.+ ..++.++-++- ++
T Consensus 46 ~~t~~a~~~I~~l~~~~p~--~~IGAGTVl---t~~~a~~ai~AGA~fivs--P~~------~~evi~~~~~~----~v~ 108 (217)
T 3lab_A 46 LRTEAGLAAISAIKKAVPE--AIVGAGTVC---TADDFQKAIDAGAQFIVS--PGL------TPELIEKAKQV----KLD 108 (217)
T ss_dssp TTSTTHHHHHHHHHHHCTT--SEEEEECCC---SHHHHHHHHHHTCSEEEE--SSC------CHHHHHHHHHH----HHH
T ss_pred CCCccHHHHHHHHHHHCCC--CeEeecccc---CHHHHHHHHHcCCCEEEe--CCC------cHHHHHHHHHc----CCC
Confidence 44456677788877776 4 355666544 477788899999998865 432 55677665552 34
Q ss_pred -----CEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--C----HHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHh
Q psy9711 85 -----PVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--D----NIKLANMANQTKDLNFSVF--AGSA-GYLLSGL 150 (198)
Q Consensus 85 -----pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--d----~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l 150 (198)
|++- |. .+++.+.+-.+. ....+|.- + +..+..+. ... +++.++ .|-+ +.+...+
T Consensus 109 ~~~~~~~~P-------G~-~TptE~~~A~~~-Gad~vK~FPa~~~gG~~~lkal~-~p~-p~i~~~ptGGI~~~N~~~~l 177 (217)
T 3lab_A 109 GQWQGVFLP-------GV-ATASEVMIAAQA-GITQLKCFPASAIGGAKLLKAWS-GPF-PDIQFCPTGGISKDNYKEYL 177 (217)
T ss_dssp CSCCCEEEE-------EE-CSHHHHHHHHHT-TCCEEEETTTTTTTHHHHHHHHH-TTC-TTCEEEEBSSCCTTTHHHHH
T ss_pred ccCCCeEeC-------CC-CCHHHHHHHHHc-CCCEEEECccccccCHHHHHHHH-hhh-cCceEEEeCCCCHHHHHHHH
Confidence 4442 44 456555554443 23334665 2 23444443 323 455544 3444 4577888
Q ss_pred hcCCCeEEecccccchHHHHHHHHHHHcCCHHHHHHHHHHhhchhh
Q psy9711 151 LVGCAGGINALSAVLGGPICELYDLAKAGKWEEAMKLQHRLVKPDV 196 (198)
Q Consensus 151 ~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~l~~ 196 (198)
..|+..++.| +.+.|.. ++++|||++..+.-+.+..+.+
T Consensus 178 ~aGa~~~vgG-s~l~~~~------~i~~~~~~~i~~~a~~~~~~~~ 216 (217)
T 3lab_A 178 GLPNVICAGG-SWLTESK------LLIEGDWNEVTRRASEIVKLSD 216 (217)
T ss_dssp HSTTBCCEEE-SGGGCHH------HHHHTCHHHHHHHHHHSCCGGG
T ss_pred HCCCEEEEEC-hhhcChh------HHhcCCHHHHHHHHHHHHhhhc
Confidence 9998776654 5566643 3367999998888887766654
No 114
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=94.21 E-value=1.3 Score=36.84 Aligned_cols=146 Identities=8% Similarity=-0.029 Sum_probs=87.8
Q ss_pred CCeEEEeCCCC-----cHHHHHHHHHHHHhcCCCEEEEc--CCCCcC--CCCCHHHHHHHHHHHHcc-------CCCCEE
Q psy9711 24 KKTIIAGTYCE-----STRATIDLTQKAAKAGANAALIL--CPYYFQ--KKMTEDLIYEHFISVADN-------SPIPVI 87 (198)
Q Consensus 24 ~~pvi~gv~~~-----~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~--~~~~~~~i~~y~~~i~~~-------~~~pi~ 87 (198)
+.||++.++.+ +.++-++.++.+.+ ++|++-+- .|..-. .-.+++.+.+..+.+.++ +++||+
T Consensus 146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~-~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~ 224 (367)
T 3zwt_A 146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGP-LADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVL 224 (367)
T ss_dssp TCCEEEEECCCTTCSCHHHHHHHHHHHHGG-GCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEE
T ss_pred CceEEEEEecCCCCCcCHHHHHHHHHHHhh-hCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 68999999875 56777777777765 58888763 454211 001367777777777653 689999
Q ss_pred EEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-------------------------C----HHHHHHHHhhcCCCC
Q psy9711 88 IYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-------------------------D----NIKLANMANQTKDLN 135 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-------------------------d----~~~~~~~~~~~~~~~ 135 (198)
+=-.|. ++.+.+.+++ +--.+.||..+ . ...+.++. +..+++
T Consensus 225 vKi~p~-----~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~-~~v~~~ 298 (367)
T 3zwt_A 225 VKIAPD-----LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMY-ALTQGR 298 (367)
T ss_dssp EEECSC-----CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHH-HHTTTC
T ss_pred EEeCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHH-HHcCCC
Confidence 977665 3444443333 22234444432 0 12233333 344445
Q ss_pred eEEEe-c-Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 136 FSVFA-G-SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 136 ~~v~~-G-~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
+.|+. | .. ......+..|++++..+.+.++ |.++.++.+.+
T Consensus 299 ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~l 345 (367)
T 3zwt_A 299 VPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKREL 345 (367)
T ss_dssp SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHHH
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHHH
Confidence 55543 2 22 2456777899999999998754 88777776654
No 115
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=94.20 E-value=0.41 Score=39.78 Aligned_cols=105 Identities=8% Similarity=-0.017 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++.+-+ ++.+.++++++++..++.|++.+ --|. .+. + .+.++.|.+++++
T Consensus 173 ~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~i 243 (371)
T 2ovl_A 173 DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWI--EEPT--IPD--D---LVGNARIVRESGH 243 (371)
T ss_dssp SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS--CTT--C---HHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--c---HHHHHHHHhhCCC
Confidence 4456667888888877 78887755 45578999999999999998854 4554 221 2 4567778888899
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
||+.= +.-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 244 PI~~d------E~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i 285 (371)
T 2ovl_A 244 TIAGG------ENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285 (371)
T ss_dssp CEEEC------TTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHH
T ss_pred CEEeC------CCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHH
Confidence 99873 33457888888874 4689999988 45544443
No 116
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=94.19 E-value=0.63 Score=38.56 Aligned_cols=127 Identities=18% Similarity=0.120 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccC----------CCCEEEEeCCCCcccccCHHHH
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNS----------PIPVIIYNNTFVTNIDISVDTL 104 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~----------~~pi~lYn~P~~tg~~l~~~~l 104 (198)
.++.++...++|+|++.+..|.-... +++... .|++.|.+.. +.|+++|-. |. ...+
T Consensus 199 ~~~~~~~~i~aGad~i~i~D~~~~~l--sp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~----G~---~~~l 269 (367)
T 1r3s_A 199 LVPYLVGQVVAGAQALQLFESHAGHL--GPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAK----DG---HFAL 269 (367)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTGGGS--CHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEET----TC---GGGH
T ss_pred HHHHHHHHHHhCCCEEEEecCccccC--CHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcC----Cc---HHHH
Confidence 35556666789999999887743333 366544 4556666544 388888753 22 2356
Q ss_pred HHHHcCC-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhHH------------HHhh-cCCCeEEecccc-----c
Q psy9711 105 VKLAHHE-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYLL------------SGLL-VGCAGGINALSA-----V 164 (198)
Q Consensus 105 ~~L~~~p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~~------------~~l~-~G~~G~is~~~n-----~ 164 (198)
..+++.+ .++++=.. |+....+.+ +++..+..+.|..++ ..+. .|..|+|-+.++ .
T Consensus 270 ~~l~~~g~d~i~~d~~~dl~~a~~~~----g~~~~l~Gnldp~~L~gt~e~i~~~v~~~l~~~g~~g~I~~~ghgi~~~~ 345 (367)
T 1r3s_A 270 EELAQAGYEVVGLDWTVAPKKARECV----GKTVTLQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDM 345 (367)
T ss_dssp HHHTTSSCSEEECCTTSCHHHHHHHH----CSSSEEEEEECGGGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTC
T ss_pred HHHHhcCCCEEEeCCCCCHHHHHHHc----CCCeEEEeCCChHHhcCCHHHHHHHHHHHHHHhCCCCeeecCCCCCCCCC
Confidence 6777765 78888444 887766544 345555544343211 1122 254678866554 3
Q ss_pred chHHHHHHHHHHHc
Q psy9711 165 LGGPICELYDLAKA 178 (198)
Q Consensus 165 ~P~~~~~l~~~~~~ 178 (198)
-|+-+..+++++++
T Consensus 346 p~env~a~v~~v~~ 359 (367)
T 1r3s_A 346 DPEHVGAFVDAVHK 359 (367)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 46777788877764
No 117
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=94.16 E-value=3.9 Score=38.59 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcCCC-------CCHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALIL--CPYYFQKK-------MTEDLIYEHFI 76 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~~-------~~~~~i~~y~~ 76 (198)
+.+...+-++.+.+.. +.|+++++ .+.+.++..+.++.+++.|+|++.+- .|...... .+++.+.+..+
T Consensus 617 ~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~ 696 (1025)
T 1gte_A 617 TAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICR 696 (1025)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHH
Confidence 3444444445555555 78999987 45678899999999999999999996 35431100 13677888888
Q ss_pred HHHccCCCCEEEEeCCC
Q psy9711 77 SVADNSPIPVIIYNNTF 93 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~ 93 (198)
.+-+++++||++=-.|.
T Consensus 697 ~v~~~~~~Pv~vK~~~~ 713 (1025)
T 1gte_A 697 WVRQAVQIPFFAKLTPN 713 (1025)
T ss_dssp HHHHHCSSCEEEEECSC
T ss_pred HHHHhhCCceEEEeCCC
Confidence 88888899999876653
No 118
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=94.11 E-value=0.27 Score=42.63 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEE
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIR 114 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~ 114 (198)
..+..+.++.+.++|+|.+.+-.-. +. .+.+.+..+.+.+.. ++||+.-| ..+.+...++.+. .+-
T Consensus 227 ~~~~~~~a~~l~~aG~d~I~id~a~---g~--~~~~~~~v~~i~~~~p~~~Vi~g~-------v~t~e~a~~l~~a-GaD 293 (490)
T 4avf_A 227 GADTGERVAALVAAGVDVVVVDTAH---GH--SKGVIERVRWVKQTFPDVQVIGGN-------IATAEAAKALAEA-GAD 293 (490)
T ss_dssp STTHHHHHHHHHHTTCSEEEEECSC---CS--BHHHHHHHHHHHHHCTTSEEEEEE-------ECSHHHHHHHHHT-TCS
T ss_pred ccchHHHHHHHhhcccceEEecccC---Cc--chhHHHHHHHHHHHCCCceEEEee-------eCcHHHHHHHHHc-CCC
Confidence 3567888888999999999886432 22 566778888888887 68999844 4567777777753 344
Q ss_pred EEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccccc
Q psy9711 115 GVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 115 giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
++|.+ ++..+.++.+.....++.|+. |. ...+..++.+|+++++.|.+...
T Consensus 294 ~I~vg~g~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~ 366 (490)
T 4avf_A 294 AVKVGIGPGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAG 366 (490)
T ss_dssp EEEECSSCSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTT
T ss_pred EEEECCCCCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhc
Confidence 44431 122233333211123455554 43 24577889999999998876443
No 119
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=94.10 E-value=1.8 Score=36.01 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=80.4
Q ss_pred HHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 20 RQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY---FQKK--MTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 20 ~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
++.. ..++++-++...+.+ +..+.++.+|+|++.+--... ..|. .+.+.+.+..+.|.+.+++||++=..
T Consensus 139 ~r~~P~~~~ianig~~~~~e--~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~v-- 214 (365)
T 3sr7_A 139 KKSRPHLLLATNIGLDKPYQ--AGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEV-- 214 (365)
T ss_dssp ------CCEEEEEETTSCHH--HHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEEC--
T ss_pred hhhCCCCcEEEEeCCCCCHH--HHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEEC--
Confidence 3444 778888776544433 345555678999998874332 1111 12557888899999999999999863
Q ss_pred CcccccCHHHHHHHHcCCCEEEEeeC-----C----------------------HHHHHHHHhhcCCCCeEEEe-cC---
Q psy9711 94 VTNIDISVDTLVKLAHHENIRGVKDT-----D----------------------NIKLANMANQTKDLNFSVFA-GS--- 142 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~p~i~giK~s-----d----------------------~~~~~~~~~~~~~~~~~v~~-G~--- 142 (198)
|..++++...++.+. .+.+|..+ . ...+.. .+ ...+++.|+. |.
T Consensus 215 --g~g~s~e~A~~l~~a-Gad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~-v~-~~~~~ipvia~GGI~~ 289 (365)
T 3sr7_A 215 --GFGMDVKTIQTAIDL-GVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLN-AQ-PLMDKVEILASGGIRH 289 (365)
T ss_dssp --SSCCCHHHHHHHHHH-TCCEEECCCBC--------------CGGGTTCSCBHHHHHHH-HG-GGTTTSEEEECSSCCS
T ss_pred --CCCCCHHHHHHHHHc-CCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHH-HH-HhcCCCeEEEeCCCCC
Confidence 445788888888753 12222221 1 112222 22 2234566653 21
Q ss_pred hhhHHHHhhcCCCeEEecccccc
Q psy9711 143 AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 143 d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
......++.+|++++..+.+.++
T Consensus 290 g~Dv~KaLalGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 290 PLDIIKALVLGAKAVGLSRTMLE 312 (365)
T ss_dssp HHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEECHHHHH
Confidence 23467889999999998886543
No 120
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=94.06 E-value=0.7 Score=37.53 Aligned_cols=138 Identities=9% Similarity=0.079 Sum_probs=76.3
Q ss_pred CCeEEEeCCCCcH------HH-HH---HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc---cCCCCEEEEe
Q psy9711 24 KKTIIAGTYCEST------RA-TI---DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD---NSPIPVIIYN 90 (198)
Q Consensus 24 ~~pvi~gv~~~~~------~~-~i---~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~---~~~~pi~lYn 90 (198)
++++|++..+.+. .+ .+ .-+++|.++|||+|-++-- +.+..++.+.++..+++.+ +.++|+++--
T Consensus 85 ~~glil~l~~~~~l~~~~~~~~l~~~~~~ve~a~~~GAdaV~vlv~--~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~ 162 (304)
T 1to3_A 85 SCAMIVAADDFIPGNGIPVDNVVLDKKINAQAVKRDGAKALKLLVL--WRSDEDAQQRLNMVKEFNELCHSNGLLSIIEP 162 (304)
T ss_dssp TSEEEEECEEEEEETTEEEEEEEECSSCCHHHHHHTTCCEEEEEEE--ECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEECCCCCCCCCccchhhccCchhHHHHHHcCCCEEEEEEE--cCCCccHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4677777644221 11 33 5677888999999987632 1222125555566655554 4589988754
Q ss_pred CCCC--cccccCH-HHHHH---HH-cC-CCEEEEeeC-----CHHHHHHHHhh---cCCCCeEEEec-Chh-----hHHH
Q psy9711 91 NTFV--TNIDISV-DTLVK---LA-HH-ENIRGVKDT-----DNIKLANMANQ---TKDLNFSVFAG-SAG-----YLLS 148 (198)
Q Consensus 91 ~P~~--tg~~l~~-~~l~~---L~-~~-p~i~giK~s-----d~~~~~~~~~~---~~~~~~~v~~G-~d~-----~~~~ 148 (198)
+|.. .+.+-++ +.+.+ .+ +. ..+++++.. +...+.++.+. ..+-.+.++.| .+. .+..
T Consensus 163 ~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~aGG~~~~~~~~~~~~ 242 (304)
T 1to3_A 163 VVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVILSSGVDEKLFPRAVRV 242 (304)
T ss_dssp EECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECCTTSCTTTHHHHHHH
T ss_pred ECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEecCCCHHHHHHHHHH
Confidence 4422 2222344 54443 22 33 357777663 34555555532 13445344444 322 2556
Q ss_pred HhhcCCCeEEecccc
Q psy9711 149 GLLVGCAGGINALSA 163 (198)
Q Consensus 149 ~l~~G~~G~is~~~n 163 (198)
++..|++|++.|-+-
T Consensus 243 a~~aGa~Gv~vGRaI 257 (304)
T 1to3_A 243 AMEAGASGFLAGRAV 257 (304)
T ss_dssp HHHTTCCEEEESHHH
T ss_pred HHHcCCeEEEEehHH
Confidence 678899999988643
No 121
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=94.06 E-value=0.18 Score=43.82 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=78.4
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD 102 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~ 102 (198)
++.|-++++. ..+..+.++.+.++|+|.+.+-... +. .+.+.+..+.+.+.. ++||+.-| ..+.+
T Consensus 219 rL~v~aavG~--~~d~~~~a~~l~~aG~d~I~id~a~---g~--~~~~~~~i~~ir~~~p~~~Vi~g~-------v~t~e 284 (496)
T 4fxs_A 219 RLRVGAAVGA--APGNEERVKALVEAGVDVLLIDSSH---GH--SEGVLQRIRETRAAYPHLEIIGGN-------VATAE 284 (496)
T ss_dssp CBCCEEECCS--SSCCHHHHHHHHHTTCSEEEEECSC---TT--SHHHHHHHHHHHHHCTTCCEEEEE-------ECSHH
T ss_pred ceeeeeeecc--ccchHHHHHHHHhccCceEEecccc---cc--chHHHHHHHHHHHHCCCceEEEcc-------cCcHH
Confidence 3444455554 3566788888889999999887543 33 677888888888888 79999844 45677
Q ss_pred HHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEec
Q psy9711 103 TLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINA 160 (198)
Q Consensus 103 ~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~ 160 (198)
...++.+. .+-++|.+ ++..+.++.+.....++.|+. |- ...+..++.+|++|++.|
T Consensus 285 ~a~~l~~a-GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 285 GARALIEA-GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHH-TCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHh-CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 77777753 23344421 122223333211112344554 32 245677899999999988
Q ss_pred cccc
Q psy9711 161 LSAV 164 (198)
Q Consensus 161 ~~n~ 164 (198)
..-.
T Consensus 364 s~f~ 367 (496)
T 4fxs_A 364 SMFA 367 (496)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 7644
No 122
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=94.06 E-value=1.6 Score=33.76 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcH--HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCEST--RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~--~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
+.+.-.++++.+.+..++||.++++.+.. ....+.++.+.++|+|++.+. .. + .++..+ +.+.++..+..
T Consensus 64 ~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~--~~--~---~~~~~~-~~~~~~~~g~~ 135 (248)
T 1geq_A 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVV--DL--P---VFHAKE-FTEIAREEGIK 135 (248)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET--TC--C---GGGHHH-HHHHHHHHTCE
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEEC--CC--C---hhhHHH-HHHHHHHhCCC
Confidence 34444677777776667888877642211 111567888889999999994 11 1 222222 33333444655
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc-CCCEE---------EEeeC-C---HHHHHHHHhhcCCCCeEEEecCh--hhHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH-HENIR---------GVKDT-D---NIKLANMANQTKDLNFSVFAGSA--GYLLSG 149 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~-~p~i~---------giK~s-d---~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~ 149 (198)
+++-=.|. -+.+.+..+.+ .+.++ |-|.. . ...+.++. +..+-.+.+-.|-. +.+...
T Consensus 136 ~~~~i~~~-----t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~-~~~~~pi~~~GGI~~~e~i~~~ 209 (248)
T 1geq_A 136 TVFLAAPN-----TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAK-RICRNKVAVGFGVSKREHVVSL 209 (248)
T ss_dssp EEEEECTT-----CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHH-HHCSSCEEEESCCCSHHHHHHH
T ss_pred eEEEECCC-----CHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHH-hhcCCCEEEEeecCCHHHHHHH
Confidence 55533332 24566666653 33333 33322 1 23444444 33333344444443 345556
Q ss_pred hhcCCCeEEeccc
Q psy9711 150 LLVGCAGGINALS 162 (198)
Q Consensus 150 l~~G~~G~is~~~ 162 (198)
+..|++|++.|.+
T Consensus 210 ~~~Gad~vivGsa 222 (248)
T 1geq_A 210 LKEGANGVVVGSA 222 (248)
T ss_dssp HHTTCSEEEECHH
T ss_pred HHcCCCEEEEcHH
Confidence 6899999998875
No 123
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=94.02 E-value=2.1 Score=35.07 Aligned_cols=145 Identities=14% Similarity=0.058 Sum_probs=81.0
Q ss_pred HHHHHHHHHhc-CCeEEEeCC-CCcHHHHHHHHHHHHhcCCCEEEEc--CCC-CcCCCCCH--HHHHHHHHHHHccCCCC
Q psy9711 13 LKIISTLRQET-KKTIIAGTY-CESTRATIDLTQKAAKAGANAALIL--CPY-YFQKKMTE--DLIYEHFISVADNSPIP 85 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv~-~~~~~~~i~~a~~a~~~Gad~v~~~--~P~-y~~~~~~~--~~i~~y~~~i~~~~~~p 85 (198)
....+.+.+.. +.|+++.++ ..+.++.. +.++.+|+|++-+. +|. +..+..++ +++.+..+.+.+.+++|
T Consensus 104 ~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~---~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~P 180 (349)
T 1p0k_A 104 RLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVP 180 (349)
T ss_dssp HHHHHHHHHHCSSSCEEEEEETTCCHHHHH---HHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSC
T ss_pred ccceehhhhhCCCceeEEeecCCCCHHHHH---HHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCC
Confidence 34444444455 889998887 44555433 44667899997554 232 22221011 12677788888888999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcC--CCEEEE-------------e---------eC---CHHHHHHHHhhcCCCCeEE
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHH--ENIRGV-------------K---------DT---DNIKLANMANQTKDLNFSV 138 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~--p~i~gi-------------K---------~s---d~~~~~~~~~~~~~~~~~v 138 (198)
|++=-. |..++++...++.+. ..|+-. + +. +...+.++. +.. +++.|
T Consensus 181 v~vK~~----~~~~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~-~~~-~~ipv 254 (349)
T 1p0k_A 181 VIVKEV----GFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIR-SEF-PASTM 254 (349)
T ss_dssp EEEEEE----SSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHH-HHC-TTSEE
T ss_pred EEEEec----CCCCCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHH-Hhc-CCCeE
Confidence 998542 234567777777643 322221 2 11 223344443 222 35555
Q ss_pred EecCh----hhHHHHhhcCCCeEEecccccch
Q psy9711 139 FAGSA----GYLLSGLLVGCAGGINALSAVLG 166 (198)
Q Consensus 139 ~~G~d----~~~~~~l~~G~~G~is~~~n~~P 166 (198)
+...+ .....++..|++++..|.+.+..
T Consensus 255 ia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~ 286 (349)
T 1p0k_A 255 IASGGLQDALDVAKAIALGASCTGMAGHFLKA 286 (349)
T ss_dssp EEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 54222 35667788999999988865543
No 124
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=93.95 E-value=0.51 Score=38.05 Aligned_cols=31 Identities=3% Similarity=0.072 Sum_probs=15.1
Q ss_pred ccccchHHHHHHHHHHH--cC-CHHHHHHHHHHh
Q psy9711 161 LSAVLGGPICELYDLAK--AG-KWEEAMKLQHRL 191 (198)
Q Consensus 161 ~~n~~P~~~~~l~~~~~--~g-d~~~A~~l~~~~ 191 (198)
.+|..-+.++.+++... .| |.++-.++.+.+
T Consensus 246 aGN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~ 279 (298)
T 2cw6_A 246 SGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFI 279 (298)
T ss_dssp CCBCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 45665566655555431 11 455544444443
No 125
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=93.95 E-value=0.54 Score=36.48 Aligned_cols=104 Identities=10% Similarity=0.031 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
..++.++..++-+.+.+. ++.+.+ .....+.+...+.++.|+++|++.+.+.|. .+. .+...++++..
T Consensus 58 ~~~~~~~~~~~~~~l~~~-gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--------~~~-~~~l~~~a~~~ 127 (262)
T 3p6l_A 58 FNLDAQTQKEIKELAASK-GIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--------LSD-WDLVEKLSKQY 127 (262)
T ss_dssp TTCCHHHHHHHHHHHHHT-TCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--------GGG-HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHc-CCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--------HHH-HHHHHHHHHHh
Confidence 346788888877776665 555433 223345677778888999999999988642 222 24555666677
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
++.+.+.|.|..+ ..-+++.+.++.+ .|++--.=|.
T Consensus 128 gv~l~~En~~~~~-~~~~~~~~~~ll~~~~~~~g~~~D~ 165 (262)
T 3p6l_A 128 NIKISVHNHPQPS-DYWKPENLLKAISGRSQSLGSCSDV 165 (262)
T ss_dssp TCEEEEECCSSSS-SSSSHHHHHHHHTTSCTTEEEEEEH
T ss_pred CCEEEEEeCCCcc-ccCCHHHHHHHHHhCCCceEEEech
Confidence 9999999998632 2237888888884 5776554444
No 126
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=93.94 E-value=0.44 Score=38.52 Aligned_cols=51 Identities=2% Similarity=-0.248 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCC-cHHHHHHHHHHHHhcC-CCEEEEcC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCE-STRATIDLTQKAAKAG-ANAALILC 58 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-~~~~~i~~a~~a~~~G-ad~v~~~~ 58 (198)
+.+...++++.+++.+++||++-++.. +.++..+.++.++++| +|++.+..
T Consensus 144 ~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~ 196 (314)
T 2e6f_A 144 DFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVN 196 (314)
T ss_dssp SHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeC
Confidence 667778888888877689999876543 5677888899999999 99998765
No 127
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=93.91 E-value=0.29 Score=40.99 Aligned_cols=112 Identities=6% Similarity=-0.045 Sum_probs=70.6
Q ss_pred CHHHHHHH----HHHHHHhcC-CeEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 8 TEEEKLKI----ISTLRQETK-KTIIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 8 t~~Er~~l----~~~~~~~~~-~pvi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
|.+.|.++ ++.++++++ -||.+=++. .+.++++++++.+++.|+|.+-+..+.+.... +..-.
T Consensus 211 slenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~--~~~~~ 288 (377)
T 2r14_A 211 SIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD--ITYPE 288 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--------CCCT
T ss_pred chhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCC--CcchH
Confidence 34566554 455555442 288775543 34688999999999999999999886543211 00013
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
++.+.|.+++++||+. + .| ++++...++.+.. ..|++=-. |+....++.
T Consensus 289 ~~~~~ik~~~~iPvi~-~----Gg--i~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~ 342 (377)
T 2r14_A 289 GFREQMRQRFKGGLIY-C----GN--YDAGRAQARLDDNTADAVAFGRPFIANPDLPERFR 342 (377)
T ss_dssp THHHHHHHHCCSEEEE-E----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHCCCCEEE-E----CC--CCHHHHHHHHHCCCceEEeecHHHHhCchHHHHHH
Confidence 5567777788999886 2 23 3688898888644 45555433 776666655
No 128
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=93.91 E-value=0.62 Score=38.34 Aligned_cols=81 Identities=11% Similarity=-0.040 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEEeCCC------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIAGTYC------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
..|.+|-.+.++.+++.+ +..|.+++.. .+.+..++.++.+.++|++.+.+.--. ... +|.++.+.++
T Consensus 129 ~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~ 205 (337)
T 3ble_A 129 GKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTL-GVL--SPEETFQGVD 205 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEECTT-CCC--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCC-CCc--CHHHHHHHHH
Confidence 456677777777777666 6777766544 346788999999999999988775443 333 3999999999
Q ss_pred HHHccC-CCCEEEE
Q psy9711 77 SVADNS-PIPVIIY 89 (198)
Q Consensus 77 ~i~~~~-~~pi~lY 89 (198)
.+.+.. ++||-++
T Consensus 206 ~l~~~~p~~~i~~H 219 (337)
T 3ble_A 206 SLIQKYPDIHFEFH 219 (337)
T ss_dssp HHHHHCTTSCEEEE
T ss_pred HHHHhcCCCeEEEE
Confidence 999988 6898877
No 129
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=93.89 E-value=0.51 Score=39.29 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
..++-.+.++.+++++ ++++.+-+ ++.+.++++++++..++.|++. +--|. .+. + .+.++.+.+++++
T Consensus 182 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iE~P~--~~~--~---~~~~~~l~~~~~i 252 (382)
T 1rvk_A 182 DVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDW--IEEPM--DEQ--S---LSSYKWLSDNLDI 252 (382)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSE--EECCS--CTT--C---HHHHHHHHHHCSS
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCE--EeCCC--Chh--h---HHHHHHHHhhCCC
Confidence 4555667888888876 78888755 4557899999999999998884 34553 121 2 4567778888899
Q ss_pred CEEEEeCCCCcccccC-HHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDIS-VDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~-~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
||+.= +.-.+ ++.+.++.+ .-+++-+|-+ .+....++
T Consensus 253 PIa~d------E~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 295 (382)
T 1rvk_A 253 PVVGP------ESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPALKT 295 (382)
T ss_dssp CEEEC------SSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred CEEEe------CCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHHHHH
Confidence 99873 33456 788888874 4689999987 45444443
No 130
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=93.86 E-value=0.84 Score=38.02 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
+.++-.++++.+++++ ++++.+-+ ++.+.+++++.++..++.|++.+ -.|+ .+. + .+.++.|.+++++|
T Consensus 173 ~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--~---~~~~~~l~~~~~iP 243 (384)
T 2pgw_A 173 GEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFI--EQPT--VSW--S---IPAMAHVREKVGIP 243 (384)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEE--ECCS--CTT--C---HHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEE--eCCC--Chh--h---HHHHHHHHhhCCCC
Confidence 3455567888888877 68887754 45578999999999999998854 4554 221 2 45677888888999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
|+.= +.-.+++.+.++.+ .-+++.+|-+ .+....++
T Consensus 244 I~~d------e~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 284 (384)
T 2pgw_A 244 IVAD------QAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKA 284 (384)
T ss_dssp EEES------TTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred EEEe------CCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHH
Confidence 9873 33457888998884 4689999988 55544443
No 131
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=93.76 E-value=0.48 Score=39.75 Aligned_cols=105 Identities=8% Similarity=0.090 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++.+-+ ++.+.++++++++..++.|++. +--|. .+ +-.+.++.|.+++++
T Consensus 171 ~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~--~~-----~~~~~~~~l~~~~~i 241 (397)
T 2qde_A 171 PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSK--IEQPL--PA-----WDLDGMARLRGKVAT 241 (397)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSC--EECCS--CT-----TCHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCE--EECCC--Ch-----hhHHHHHHHHhhCCC
Confidence 3455567788888876 78887755 4557899999999999999884 33443 11 124677888888899
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
||+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 242 PIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 283 (397)
T 2qde_A 242 PIYADE------SAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRW 283 (397)
T ss_dssp CEEEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred CEEEeC------CcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHH
Confidence 998733 3346788888873 5789999988 45444333
No 132
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=93.75 E-value=0.8 Score=35.53 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 115 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g 115 (198)
..+.++.++.+++.|+|.+.+..+...... .....+..+++++.+++|+++- |.--+++.+.++.+.. +-|
T Consensus 30 ~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~--~~~~~~~i~~i~~~~~iPvi~~------Ggi~~~~~~~~~~~~G-ad~ 100 (252)
T 1ka9_F 30 AGDPVEAARAYDEAGADELVFLDISATHEE--RAILLDVVARVAERVFIPLTVG------GGVRSLEDARKLLLSG-ADK 100 (252)
T ss_dssp TTCHHHHHHHHHHHTCSCEEEEECCSSTTC--HHHHHHHHHHHHTTCCSCEEEE------SSCCSHHHHHHHHHHT-CSE
T ss_pred cCCHHHHHHHHHHcCCCEEEEEcCCccccC--ccccHHHHHHHHHhCCCCEEEE------CCcCCHHHHHHHHHcC-CCE
Confidence 457889999999999999988866533222 5556778899999999999982 3344677777777542 334
Q ss_pred EeeC-----CHHHHHHHH
Q psy9711 116 VKDT-----DNIKLANMA 128 (198)
Q Consensus 116 iK~s-----d~~~~~~~~ 128 (198)
+-.. ++..+.++.
T Consensus 101 V~lg~~~l~~p~~~~~~~ 118 (252)
T 1ka9_F 101 VSVNSAAVRRPELIRELA 118 (252)
T ss_dssp EEECHHHHHCTHHHHHHH
T ss_pred EEEChHHHhCcHHHHHHH
Confidence 4333 555555555
No 133
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=93.75 E-value=0.26 Score=39.63 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=68.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCCC---CCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQKK---MTEDLIYEHFISVADNSPIPVIIYNNTFVTN 96 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~~---~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg 96 (198)
+.-++.++.+.. .|+.++++|+|.+++..-. +..++ .|-++++.|-+.|++.++.|+++=|.|. .+
T Consensus 34 ~~i~~~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pf-gs 106 (281)
T 1oy0_A 34 HKWAMLTAYDYS------TARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPF-GS 106 (281)
T ss_dssp CCEEEEECCSHH------HHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCT-TS
T ss_pred CcEEEEeCcCHH------HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCC-Cc
Confidence 344566777643 4566778999999874311 11111 3589999999999999999999999995 45
Q ss_pred cccCHHHH----HHHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711 97 IDISVDTL----VKLAHHENIRGVKDT-D---NIKLANMA 128 (198)
Q Consensus 97 ~~l~~~~l----~~L~~~p~i~giK~s-d---~~~~~~~~ 128 (198)
+..+++.. .|+.+--...|+|.+ . ..+++.+.
T Consensus 107 y~~s~~~a~~na~rl~~eaGa~aVklEdg~e~~~~I~al~ 146 (281)
T 1oy0_A 107 YEAGPTAALAAATRFLKDGGAHAVKLEGGERVAEQIACLT 146 (281)
T ss_dssp STTCHHHHHHHHHHHHHTTCCSEEEEEBSGGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCCeEEEECCcHHHHHHHHHHH
Confidence 55677653 566666789999987 2 35555554
No 134
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=93.73 E-value=0.41 Score=40.13 Aligned_cols=118 Identities=7% Similarity=-0.035 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.++++.++++. ++++.+-+ ++.+.++++++++..++.|++.+ -.|. .+. -.+.++.|.+++++|
T Consensus 190 ~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P~--~~~-----~~~~~~~l~~~~~iP 260 (393)
T 2og9_A 190 GALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWI--EEPL--DAY-----DHEGHAALALQFDTP 260 (393)
T ss_dssp HHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE--ECCS--CTT-----CHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Ccc-----cHHHHHHHHHhCCCC
Confidence 455567778887776 78887754 45578999999999999998854 3443 111 245677888888999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|+.=. .-.+++.+.++.+ .-+++.+|-+ .+....++......-++.+..+
T Consensus 261 Ia~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~gi~~~~h 315 (393)
T 2og9_A 261 IATGE------MLTSAAEHGDLIRHRAADYLMPDAPRVGGITPFLKIASLAEHAGLMLAPH 315 (393)
T ss_dssp EEECT------TCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCC
T ss_pred EEeCC------CcCCHHHHHHHHHCCCCCEEeeCccccCCHHHHHHHHHHHHHcCCEEecc
Confidence 98733 3347788888874 4689999987 4544444332111234555544
No 135
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=93.71 E-value=2.6 Score=35.12 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-CC---CcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-PY---YFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~---y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.+...++++.+.+. +.++++.++... ..+.++.+.++|+|.+.+.. |. +..+ +......+.+.+.++
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~~---~~e~a~~~~~agad~i~i~~~~~~~~~~~~----~~~~~~i~~l~~~~~ 211 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQN---VREIAPIVIKAGADLLVIQGTLISAEHVNT----GGEALNLKEFIGSLD 211 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTTT---HHHHHHHHHHTTCSEEEEECSSCCSSCCCC---------CHHHHHHHCS
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCcc---HHHHHHHHHHCCCCEEEEeCCccccccCCC----cccHHHHHHHHHhcC
Confidence 455555666666554 788877666543 35566777788999987752 31 2222 111223566777789
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC---------------CHHHHHHHHhh------cCCC-CeEEEe-
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT---------------DNIKLANMANQ------TKDL-NFSVFA- 140 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s---------------d~~~~~~~~~~------~~~~-~~~v~~- 140 (198)
+||++ |...+++...++.+. .+.+|+.+ ....+.++.+. ..+. ++.|+.
T Consensus 212 ~pvi~-------ggi~t~e~a~~~~~~-Gad~i~vg~Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~ 283 (393)
T 2qr6_A 212 VPVIA-------GGVNDYTTALHMMRT-GAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIAD 283 (393)
T ss_dssp SCEEE-------ECCCSHHHHHHHHTT-TCSEEEESCCSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEEC
T ss_pred CCEEE-------CCcCCHHHHHHHHHc-CCCEEEECCCcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEE
Confidence 99998 334678887777763 34444433 11222222211 0222 256653
Q ss_pred c-C--hhhHHHHhhcCCCeEEecccc
Q psy9711 141 G-S--AGYLLSGLLVGCAGGINALSA 163 (198)
Q Consensus 141 G-~--d~~~~~~l~~G~~G~is~~~n 163 (198)
| . ......++.+|++++..|.+.
T Consensus 284 GGI~~~~dv~kalalGA~~V~iG~~~ 309 (393)
T 2qr6_A 284 GSIENSGDVVKAIACGADAVVLGSPL 309 (393)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 2 2 235678889999999988774
No 136
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=93.69 E-value=2.8 Score=35.24 Aligned_cols=148 Identities=17% Similarity=0.196 Sum_probs=84.5
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEc-------------------CCC
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALIL-------------------CPY 60 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~-------------------~P~ 60 (198)
||+.+.+.+| +.+.. ..|.+.+... .+.+.+.++++.++++|++++.+. ||.
T Consensus 130 s~~~s~~le~-------v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~ 202 (392)
T 2nzl_A 130 SSWATSSIEE-------VAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQ 202 (392)
T ss_dssp CTTCSSCHHH-------HHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTT
T ss_pred cchHHHHHHH-------HHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccc
Confidence 5555556654 22333 6788888744 456677889999999999999883 222
Q ss_pred C-----c------CC----C--C----------CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCE
Q psy9711 61 Y-----F------QK----K--M----------TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENI 113 (198)
Q Consensus 61 y-----~------~~----~--~----------~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i 113 (198)
. . .| . . +++-..+..+.|.+.+++||++=.. .+++...++.+. .+
T Consensus 203 ~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv-------~~~e~A~~a~~a-Ga 274 (392)
T 2nzl_A 203 LRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGI-------LRGDDAREAVKH-GL 274 (392)
T ss_dssp CCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEE-------CCHHHHHHHHHT-TC
T ss_pred cchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEec-------CCHHHHHHHHHc-CC
Confidence 1 0 00 0 0 0111223356677778899998542 467777666654 23
Q ss_pred EEEeeC------------CHHHHHHHHhhcCCCCeEEEe-cC---hhhHHHHhhcCCCeEEecccccc
Q psy9711 114 RGVKDT------------DNIKLANMANQTKDLNFSVFA-GS---AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 114 ~giK~s------------d~~~~~~~~~~~~~~~~~v~~-G~---d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
-+|..+ ++..+.++.+ ..++++.|+. |. ......++.+|++++..|.+.++
T Consensus 275 d~I~vs~~ggr~~~~g~~~~~~l~~v~~-av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 275 NGILVSNHGARQLDGVPATIDVLPEIVE-AVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVW 341 (392)
T ss_dssp CEEEECCGGGTSSTTCCCHHHHHHHHHH-HHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CEEEeCCCCCCcCCCCcChHHHHHHHHH-HcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence 333332 1233334432 2334566663 21 23567888999999998876544
No 137
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=93.58 E-value=1.7 Score=35.33 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC----CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS----PIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~----~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
.++.++...++|+|++++.-|.-...+ ++.. ..|++.|.+.. +.|+++|- .|. ...+..+++.
T Consensus 181 ~~~~~~~~~~aGad~i~i~d~~~~~ls--p~~f~ef~~p~~k~i~~~i~~~~g~~~i~~~----~g~---~~~l~~l~~~ 251 (338)
T 2eja_A 181 VLAYLKEQIKAGADVVQIFDSWVNNLS--LEDYGEYVYPYVNYLISELKDFSDTPVIYFF----RGS---SSFIDLAVDY 251 (338)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTGGGSC--HHHHHHHTHHHHHHHHHHHHHHCCCCEEEEE----SSH---HHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCEEEEecCccccCC--HHHHHHHhHHHHHHHHHHHhhcCCCCEEEEc----CCc---HHHHHHHHHc
Confidence 355666667899999999877533333 5544 44557777665 68977763 232 4567777775
Q ss_pred C-CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChh--------h----HHHHhh-cCC-CeEEecccc-----cchHHH
Q psy9711 111 E-NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAG--------Y----LLSGLL-VGC-AGGINALSA-----VLGGPI 169 (198)
Q Consensus 111 p-~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~--------~----~~~~l~-~G~-~G~is~~~n-----~~P~~~ 169 (198)
+ +++++-.. |+....+.+ +..+..+.|. . ....+. .|. .|+|-+.++ .-|+-+
T Consensus 252 g~d~~~~d~~~dl~~~~~~~------~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en~ 325 (338)
T 2eja_A 252 RADALSVDWSVDIPELFKIY------DKGFQGNLEPAVLYASEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKV 325 (338)
T ss_dssp CCSEEECCTTSCHHHHHHHC------CSEEECCBCGGGGGSCHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHHH
T ss_pred CCCEEEeCCCCCHHHHHHhC------CeEEEECCCHHHhcCCHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHHH
Confidence 4 68888445 887765532 2333333222 1 112233 354 578876664 345777
Q ss_pred HHHHHHHHc
Q psy9711 170 CELYDLAKA 178 (198)
Q Consensus 170 ~~l~~~~~~ 178 (198)
..+++++++
T Consensus 326 ~a~v~~v~~ 334 (338)
T 2eja_A 326 KYLVDLVKS 334 (338)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888887764
No 138
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=93.55 E-value=0.67 Score=41.53 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=70.2
Q ss_pred CHHHH----HHHHHHHHHhc--CCeEEEeC-------CCCcHHHHHHHHHHHHhcCCCEEEEcC----CCC---cCCCCC
Q psy9711 8 TEEEK----LKIISTLRQET--KKTIIAGT-------YCESTRATIDLTQKAAKAGANAALILC----PYY---FQKKMT 67 (198)
Q Consensus 8 t~~Er----~~l~~~~~~~~--~~pvi~gv-------~~~~~~~~i~~a~~a~~~Gad~v~~~~----P~y---~~~~~~ 67 (198)
|.+.| .++++.+++++ +.||.+=+ ++.+.++++++++.+++.|+|.+-+.. |.+ .... .
T Consensus 186 s~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~-~ 264 (671)
T 1ps9_A 186 DYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPV-P 264 (671)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTS-C
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccC-C
Confidence 34566 44555555555 67776622 245788999999999999999998752 111 0111 0
Q ss_pred HHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHH
Q psy9711 68 EDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANM 127 (198)
Q Consensus 68 ~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~ 127 (198)
+....++.+.|.+.+++||+. .|.-.+++...++.+.. ..+++=-. |+....++
T Consensus 265 ~~~~~~~~~~i~~~~~iPvi~------~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~ 323 (671)
T 1ps9_A 265 RGAFSWVTRKLKGHVSLPLVT------TNRINDPQVADDILSRGDADMVSMARPFLADAELLSKA 323 (671)
T ss_dssp TTTTHHHHHHHTTSCSSCEEE------CSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred cchHHHHHHHHHHhcCceEEE------eCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHH
Confidence 222356778888888999986 34334788888877543 45554333 55444444
No 139
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=93.52 E-value=2.3 Score=33.85 Aligned_cols=131 Identities=11% Similarity=0.110 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
.+.++.+.+.+++||+..-.-. ++. ++..|.++|||+|++..+.. + ++++.++++ .+...++.+++=-
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfii-d~~---qv~~A~~~GAD~VlLi~a~l---~--~~~l~~l~~-~a~~lGl~~lvev-- 169 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVV-QPY---QIHEARAHGADMLLLIVAAL---E--QSVLVSMLD-RTESLGMTALVEV-- 169 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCC-SHH---HHHHHHHTTCSEEEEEGGGS---C--HHHHHHHHH-HHHHTTCEEEEEE--
T ss_pred HHHHHHHHHhCCCCEEECcccc-CHH---HHHHHHHcCCCEEEEecccC---C--HHHHHHHHH-HHHHCCCcEEEEc--
Confidence 3456666665699998753222 222 24455579999999975532 2 556555444 4455688776421
Q ss_pred CCcccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEec--Ch--hhHHHHhhcCCCeEEec
Q psy9711 93 FVTNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFAG--SA--GYLLSGLLVGCAGGINA 160 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G--~d--~~~~~~l~~G~~G~is~ 160 (198)
-+.+.+.+..+ -..++|+=.. |+..+.++.. ..++++.++.+ -. +.+......|++|++-|
T Consensus 170 ------~t~ee~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~-~v~~~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 170 ------HTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAP-GLPSSVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp ------SSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGG-GSCTTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ------CCHHHHHHHHHCCCCEEEECCCcccccccCHHHHHHHHH-hCcccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 13455555444 3578887521 5667777763 44445555543 22 34566678999999988
Q ss_pred cc
Q psy9711 161 LS 162 (198)
Q Consensus 161 ~~ 162 (198)
.+
T Consensus 243 sa 244 (272)
T 3qja_A 243 EG 244 (272)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 140
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=93.50 E-value=0.33 Score=40.08 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.++++.+++++ ++++.+-+ ++.+.++++++++..++.|++.+ --|+ .+. -.+.++.+.+++++
T Consensus 171 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P~--~~~-----~~~~~~~l~~~~~i 241 (359)
T 1mdl_A 171 ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI--EEPT--LQH-----DYEGHQRIQSKLNV 241 (359)
T ss_dssp SHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCE--ECCS--CTT-----CHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--ECCC--Chh-----hHHHHHHHHHhCCC
Confidence 3455667888888877 78888755 45578999999999999998854 4453 121 24667888888899
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
||+.= +.-.+++.+.++.+ .-+++.+|-+
T Consensus 242 PI~~d------e~~~~~~~~~~~i~~~~~d~v~ik~~ 272 (359)
T 1mdl_A 242 PVQMG------ENWLGPEEMFKALSIGACRLAMPDAM 272 (359)
T ss_dssp CEEEC------TTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred CEEeC------CCCCCHHHHHHHHHcCCCCEEeecch
Confidence 99873 33456888888874 4689999988
No 141
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=93.49 E-value=1.2 Score=37.16 Aligned_cols=119 Identities=11% Similarity=0.140 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++.+=+ ++-+.++++++++..++.|++.+ --|. .+. + .+.++.|.+++++
T Consensus 176 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~i 246 (383)
T 3i4k_A 176 DPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELF--EQPT--PAD--D---LETLREITRRTNV 246 (383)
T ss_dssp CHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE--ESCS--CTT--C---HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Chh--h---HHHHHHHHhhCCC
Confidence 4566678888888887 68888854 55678999999999999997744 3453 121 2 3557778888899
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
||+.= ..-.+++.+.++.+ .-.++-+|-+ .+....++......-++.+..|
T Consensus 247 PIa~d------E~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~ 302 (383)
T 3i4k_A 247 SVMAD------ESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEAGGLACHGA 302 (383)
T ss_dssp EEEES------TTCSSHHHHHHHHHHTCCSEEEECTTTTTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred CEEec------CccCCHHHHHHHHHcCCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEeC
Confidence 99873 23456888888884 5689999988 4555544432111234566544
No 142
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=93.47 E-value=0.61 Score=37.91 Aligned_cols=52 Identities=6% Similarity=-0.043 Sum_probs=24.0
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEE
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIY 89 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lY 89 (198)
+.+..++.++.+.++|+|.+.+.--. ... +|+++.+.++.+.+.. ++|+-++
T Consensus 155 ~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~l~~H 207 (307)
T 1ydo_A 155 PIEQVIRLSEALFEFGISELSLGDTI-GAA--NPAQVETVLEALLARFPANQIALH 207 (307)
T ss_dssp CHHHHHHHHHHHHHHTCSCEEEECSS-CCC--CHHHHHHHHHHHHTTSCGGGEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCC-CCc--CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 34555555555555555544443221 111 2555555555555544 2444443
No 143
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=93.46 E-value=0.42 Score=37.68 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=46.3
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC----------------CCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQ----------------KKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~----------------~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
.+..+.++.++.++.+.+.|+|.+.+-.|+-.+ ...+.+...+..+++.+.+++|+++
T Consensus 26 ~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~ 99 (262)
T 1rd5_A 26 AGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVL 99 (262)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 577778999999999999999999998887421 1123677778888888888999987
No 144
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Probab=93.38 E-value=0.48 Score=39.29 Aligned_cols=118 Identities=10% Similarity=0.156 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++.+-+ +..+.+++++.++..++.|++. +--|. .+. + .+.++.+.+++++|
T Consensus 171 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~--~~~--~---~~~~~~l~~~~~ip 241 (370)
T 1nu5_A 171 PAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVEL--VEQPV--PRA--N---FGALRRLTEQNGVA 241 (370)
T ss_dssp HHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCE--EECCS--CTT--C---HHHHHHHHHHCSSE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcce--EeCCC--Ccc--c---HHHHHHHHHhCCCC
Confidence 455567788887776 68887754 4557899999999999999884 44553 121 2 45677888888999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|+.=. .-.+++.+.++.+. -+++-+|-+ .+....++......-++.+..|
T Consensus 242 Ia~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~ 296 (370)
T 1nu5_A 242 ILADE------SLSSLSSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGG 296 (370)
T ss_dssp EEEST------TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC
T ss_pred EEeCC------CCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHHHHHHHHHHcCCcEEec
Confidence 88733 23577888888853 689999987 5554444432111234555544
No 145
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=93.31 E-value=0.36 Score=37.95 Aligned_cols=117 Identities=17% Similarity=0.097 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
|..+++.-+..++.|.+.|||.+-+..++-.-.+.+.+.+.+-.+.|.++++ +++|+ . ++. |+.+.+.+.+
T Consensus 90 G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIl-E----t~~-Lt~eei~~a~ 163 (239)
T 3ngj_A 90 GATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVII-E----CCY-LTNEEKVEVC 163 (239)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEEC-C----GGG-SCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEE-e----cCC-CCHHHHHHHH
Confidence 6667777788999999999999999987732111247788888888888875 55544 2 454 7888887776
Q ss_pred c---CCCEEEEeeC-C-------HHHHHHHHhhcCCCCeEE--EecCh--hhHHHHhhcCCC
Q psy9711 109 H---HENIRGVKDT-D-------NIKLANMANQTKDLNFSV--FAGSA--GYLLSGLLVGCA 155 (198)
Q Consensus 109 ~---~p~i~giK~s-d-------~~~~~~~~~~~~~~~~~v--~~G~d--~~~~~~l~~G~~ 155 (198)
+ .-....||-| - +..+..+. +..++++.| -.|.- ......+.+|++
T Consensus 164 ~ia~~aGADfVKTSTGf~~ggAt~~dv~lmr-~~vg~~v~VKasGGIrt~~da~~~i~aGA~ 224 (239)
T 3ngj_A 164 KRCVAAGAEYVKTSTGFGTHGATPEDVKLMK-DTVGDKALVKAAGGIRTFDDAMKMINNGAS 224 (239)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHHHHHHHH-HHHGGGSEEEEESSCCSHHHHHHHHHTTEE
T ss_pred HHHHHHCcCEEECCCCCCCCCCCHHHHHHHH-HhhCCCceEEEeCCCCCHHHHHHHHHhccc
Confidence 4 3478888988 2 23444333 233455544 34433 245677789988
No 146
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=93.20 E-value=1.2 Score=33.79 Aligned_cols=86 Identities=15% Similarity=0.116 Sum_probs=54.1
Q ss_pred HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CC-HHHHHHHHHHHHccCCCCEEE
Q psy9711 13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK--MT-EDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~-~~~i~~y~~~i~~~~~~pi~l 88 (198)
.++++.+.+.. +.++++++. +.++ ++.+.+.|+|.+++.++.|...+ .+ ...-.++.+++.+.+++||+.
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~--t~~e----~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia 180 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIA--TVEE----AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA 180 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECS--SHHH----HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhCCCceEEecCC--CHHH----HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEE
Confidence 45666666655 667766553 3333 45578899999888777653211 00 223356788888888888876
Q ss_pred EeCCCCcccccCHHHHHHHHcC
Q psy9711 89 YNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~~~ 110 (198)
.|---+++.+.++.+.
T Consensus 181 ------~GGI~~~~~~~~~~~~ 196 (223)
T 1y0e_A 181 ------EGNVITPDMYKRVMDL 196 (223)
T ss_dssp ------ESSCCSHHHHHHHHHT
T ss_pred ------ecCCCCHHHHHHHHHc
Confidence 3322278888888754
No 147
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=93.17 E-value=0.46 Score=38.17 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
+.+.-.++++.+.+.+++||++-++. +..+..+.++.++++|+|++.+..
T Consensus 148 ~~~~~~eii~~v~~~~~~pv~vk~~~-~~~~~~~~a~~l~~~G~d~i~v~~ 197 (311)
T 1ep3_A 148 DPEVAAALVKACKAVSKVPLYVKLSP-NVTDIVPIAKAVEAAGADGLTMIN 197 (311)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEECS-CSSCSHHHHHHHHHTTCSEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECC-ChHHHHHHHHHHHHcCCCEEEEeC
Confidence 34445677777776668899886653 233456778899999999999964
No 148
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=93.16 E-value=0.32 Score=39.10 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEE--EcCCCCcC-CC--------CCHHHHHHHHHHHHccCCCCEEE---
Q psy9711 24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAAL--ILCPYYFQ-KK--------MTEDLIYEHFISVADNSPIPVII--- 88 (198)
Q Consensus 24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~--~~~P~y~~-~~--------~~~~~i~~y~~~i~~~~~~pi~l--- 88 (198)
++-||+|..+. +.+.+++.++.++++|++..+ +.-++|.+ |. ..-++-.+.++++++..++|++-
T Consensus 15 ~~~vIAGpc~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~~~te~~ 94 (280)
T 2qkf_A 15 PFVLFGGINVLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVH 94 (280)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCCEEEECC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHHhhhhcceeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCcEEEecC
Confidence 45688886443 678899999999988755431 11122222 10 01255567788888888999875
Q ss_pred --------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 --------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 --------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
|-+|++ ..-..++++++++...-+++|-.
T Consensus 95 d~~~~~~l~~~~d~~kIga~--~~~n~~ll~~~a~~~kPV~lk~G 137 (280)
T 2qkf_A 95 EPHQCQPVAEVCDVIQLPAF--LARQTDLVVAMAKTGNVVNIKKP 137 (280)
T ss_dssp SGGGHHHHHHHCSEEEECGG--GTTBHHHHHHHHHTCCEEEEECC
T ss_pred CHHHHHHHHhhCCEEEECcc--cccCHHHHHHHHcCCCcEEEECC
Confidence 333332 12345588888888888888887
No 149
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=93.09 E-value=0.51 Score=37.82 Aligned_cols=96 Identities=22% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC----CcCC---CCCHHHHHHHHHHHHccCCCCEEEEeCCCCcc
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY----YFQK---KMTEDLIYEHFISVADNSPIPVIIYNNTFVTN 96 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~----y~~~---~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg 96 (198)
+.-++.++.+.. .|+.++++|+|++++..-. +..+ ..|-++++.|-+.|++.++.+.++=|.|. .+
T Consensus 29 ~~i~m~tayDa~------sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pf-gs 101 (275)
T 3vav_A 29 EKIAMLTCYDAS------FAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPF-GT 101 (275)
T ss_dssp CCEEEEECCSHH------HHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCT-TS
T ss_pred CcEEEEeCcCHH------HHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCC-CC
Confidence 334566776643 4566788999999776322 1111 14599999999999999986667789985 23
Q ss_pred cccCHHHH----HHHHcCCCEEEEeeC-C---HHHHHHHH
Q psy9711 97 IDISVDTL----VKLAHHENIRGVKDT-D---NIKLANMA 128 (198)
Q Consensus 97 ~~l~~~~l----~~L~~~p~i~giK~s-d---~~~~~~~~ 128 (198)
+ -+++.. .+|.+. .+.|+|.+ . .+.++.+.
T Consensus 102 Y-~s~~~a~~~a~rl~ka-Ga~aVklEdg~~~~~~i~~l~ 139 (275)
T 3vav_A 102 Y-GTPADAFASAVKLMRA-GAQMVKFEGGEWLAETVRFLV 139 (275)
T ss_dssp C-SSHHHHHHHHHHHHHT-TCSEEEEECCGGGHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHc-CCCEEEECCchhHHHHHHHHH
Confidence 5 566654 456664 89999988 2 34455544
No 150
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=93.09 E-value=0.54 Score=39.50 Aligned_cols=117 Identities=12% Similarity=0.013 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++++ ++++++-+ +..+.++++++++..++.|++.+ --|. .+. -.+.++.|.+++++||
T Consensus 199 ~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--E~P~--~~~-----~~~~~~~l~~~~~iPI 269 (407)
T 2o56_A 199 RLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYY--EEPV--MPL-----NPAQMKQVADKVNIPL 269 (407)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCE--ECSS--CSS-----SHHHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--eCCC--Chh-----hHHHHHHHHHhCCCCE
Confidence 34456777777776 78888765 45578999999999999998743 3443 111 2466788888899999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++......-++.+..+
T Consensus 270 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~g~~~~~h 323 (407)
T 2o56_A 270 AAGE------RIYWRWGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQIH 323 (407)
T ss_dssp EECT------TCCHHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCC
T ss_pred EeCC------CcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeec
Confidence 8733 2336788888884 4689999988 3443333332112234555444
No 151
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=93.00 E-value=2 Score=35.88 Aligned_cols=109 Identities=8% Similarity=-0.015 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHhc-----CCeEEEeCC----------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 8 TEEEKLKIISTLRQET-----KKTIIAGTY----------CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-----~~pvi~gv~----------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
|.+.|.+++..+++++ .-||.+=++ ..+.++++++++.+++.|+|.+-+..+.+..+.. +.
T Consensus 222 slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~-~~--- 297 (379)
T 3aty_A 222 TIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQI-GD--- 297 (379)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCC-CC---
T ss_pred ChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCc-cH---
Confidence 5666766555555544 236666222 2356889999999999999999998765432221 22
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
+ .+.|.+.+++||+. ..|+ +++...++.+.. .+|++=-. |+....++.
T Consensus 298 ~-~~~ir~~~~iPvi~-----~G~i--t~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~ 350 (379)
T 3aty_A 298 V-VAWVRGSYSGVKIS-----NLRY--DFEEADQQIREGKVDAVAFGAKFIANPDLVERAQ 350 (379)
T ss_dssp H-HHHHHTTCCSCEEE-----ESSC--CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred H-HHHHHHHCCCcEEE-----ECCC--CHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHHH
Confidence 4 66777788999886 2233 899998888644 45555444 776666665
No 152
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=92.96 E-value=3.5 Score=34.28 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=74.9
Q ss_pred CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcC--CCCc-----------CC-C-----------------------
Q psy9711 24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILC--PYYF-----------QK-K----------------------- 65 (198)
Q Consensus 24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~--P~y~-----------~~-~----------------------- 65 (198)
..|++.+... .+.+.+.+.++.++++|++++.+.. |... .| +
T Consensus 132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~ 211 (368)
T 2nli_A 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA 211 (368)
T ss_dssp TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence 6778888644 4566778889999999999987763 3210 00 0
Q ss_pred CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHHHhhcCC
Q psy9711 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANMANQTKD 133 (198)
Q Consensus 66 ~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~~~~~~~ 133 (198)
.++.-..+..+.|.+.+++||++=.. .+++...++.+.. +.+|..+ ++..+.++.+ ..+
T Consensus 212 ~d~~~~~~~i~~lr~~~~~PvivK~v-------~~~e~a~~a~~~G-ad~I~vs~~ggr~~~~g~~~~~~l~~v~~-~v~ 282 (368)
T 2nli_A 212 SKQKISPRDIEEIAGHSGLPVFVKGI-------QHPEDADMAIKRG-ASGIWVSNHGARQLYEAPGSFDTLPAIAE-RVN 282 (368)
T ss_dssp BCSBCCHHHHHHHHHHSSSCEEEEEE-------CSHHHHHHHHHTT-CSEEEECCGGGTSCSSCCCHHHHHHHHHH-HHT
T ss_pred cCchhhHHHHHHHHHHcCCCEEEEcC-------CCHHHHHHHHHcC-CCEEEEcCCCcCCCCCCCChHHHHHHHHH-HhC
Confidence 00111122356666667888887532 5667766666542 2222221 2233334432 223
Q ss_pred CCeEEEe-cC---hhhHHHHhhcCCCeEEecccccc
Q psy9711 134 LNFSVFA-GS---AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 134 ~~~~v~~-G~---d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
+++.|+. |. ......++.+|++++..|...++
T Consensus 283 ~~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~ 318 (368)
T 2nli_A 283 KRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLF 318 (368)
T ss_dssp TSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 3455543 31 23567788999999998875443
No 153
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=92.96 E-value=1.2 Score=35.87 Aligned_cols=45 Identities=18% Similarity=0.039 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
+.+..++.++.+.++|++.+.+.--. ... +|.++.+.++.+.+..
T Consensus 148 ~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~ 192 (293)
T 3ewb_X 148 DRAFLIEAVQTAIDAGATVINIPDTV-GYT--NPTEFGQLFQDLRREI 192 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECSS-SCC--CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCC-CCC--CHHHHHHHHHHHHHhc
Confidence 33444455555555555543332221 112 2445555555444443
No 154
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=92.92 E-value=0.65 Score=40.47 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=77.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEEEeCCCCcccccCHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-IPVIIYNNTFVTNIDISVD 102 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~lYn~P~~tg~~l~~~ 102 (198)
+.+|-++++. ..+..+.++.+.++|+|.+.+-... +. .+.+.+..+.+.+..+ +|++.-|. .+.+
T Consensus 244 rl~V~aavg~--~~d~~era~aLveaGvd~I~Id~a~---g~--~~~v~~~i~~i~~~~~~~~vi~g~v-------~t~e 309 (511)
T 3usb_A 244 RLLVGAAVGV--TADAMTRIDALVKASVDAIVLDTAH---GH--SQGVIDKVKEVRAKYPSLNIIAGNV-------ATAE 309 (511)
T ss_dssp CBCCEEEECS--STTHHHHHHHHHHTTCSEEEEECSC---TT--SHHHHHHHHHHHHHCTTSEEEEEEE-------CSHH
T ss_pred ceeeeeeeee--ccchHHHHHHHHhhccceEEecccc---cc--hhhhhhHHHHHHHhCCCceEEeeee-------ccHH
Confidence 4455555553 3456888888899999999997552 33 6778888888888874 89997553 4677
Q ss_pred HHHHHHcCCCEEEEeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEec
Q psy9711 103 TLVKLAHHENIRGVKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINA 160 (198)
Q Consensus 103 ~l~~L~~~p~i~giK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~ 160 (198)
...++.+. .+-++|.+ ++..+.++.+....-++.|+. |. ...+..++.+|++|++.|
T Consensus 310 ~a~~~~~a-Gad~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 310 ATKALIEA-GANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHH-TCSEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHh-CCCEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 77777653 23333321 222222322111112344553 32 345778899999999988
Q ss_pred ccc
Q psy9711 161 LSA 163 (198)
Q Consensus 161 ~~n 163 (198)
..-
T Consensus 389 s~~ 391 (511)
T 3usb_A 389 SMF 391 (511)
T ss_dssp TTT
T ss_pred HHH
Confidence 764
No 155
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=92.92 E-value=0.55 Score=39.27 Aligned_cols=117 Identities=11% Similarity=0.097 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++++ ++++.+-+ +..+.++++++++..++.|++ .+--|. .+. -.+.++.|.+++++||
T Consensus 183 ~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~--~iE~P~--~~~-----~~~~~~~l~~~~~ipI 253 (392)
T 2poz_A 183 ELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDIC--FVEEPC--DPF-----DNGALKVISEQIPLPI 253 (392)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEE--EEECCS--CTT-----CHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCC--Ccc-----cHHHHHHHHhhCCCCE
Confidence 44457788888776 78888755 455789999999999998765 344553 121 2466788888889999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++.+....-++.+..+
T Consensus 254 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~h 307 (392)
T 2poz_A 254 AVGE------RVYTRFGFRKIFELQACGIIQPDIGTAGGLMETKKICAMAEAYNMRVAPH 307 (392)
T ss_dssp EECT------TCCHHHHHHHHHTTTCCSEECCCTTTSSCHHHHHHHHHHHHTTTCEECCC
T ss_pred EecC------CcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEecC
Confidence 8733 2345788888884 4689999988 5554444432112234555544
No 156
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=92.89 E-value=2.3 Score=32.02 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=42.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
+.|++..+.+.+.++..+.++.+.+.|++.+.+..+. ++ . .+..+.+++..+.|+++
T Consensus 6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~---~~--~---~~~i~~i~~~~~~~l~v 62 (212)
T 2v82_A 6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS---PQ--W---EQSIPAIVDAYGDKALI 62 (212)
T ss_dssp SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS---TT--H---HHHHHHHHHHHTTTSEE
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC---hh--H---HHHHHHHHHhCCCCeEE
Confidence 5688888888899999999999999999999886542 22 2 24455666666777776
No 157
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=92.84 E-value=1.1 Score=37.42 Aligned_cols=105 Identities=7% Similarity=-0.058 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHH----hc-CCeEEEeCCCC----------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 8 TEEEKLKIISTLRQ----ET-KKTIIAGTYCE----------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 8 t~~Er~~l~~~~~~----~~-~~pvi~gv~~~----------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
|.+-|.+++..+++ ++ .-||.+=++.. +.++++++++.++++|+|.+-+..+.. . +
T Consensus 198 slenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~---~--~---- 268 (362)
T 4ab4_A 198 SLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSREREA---D--D---- 268 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCC---T--T----
T ss_pred chhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCC---C--H----
Confidence 45666655544444 44 22787755543 256789999999999999999987751 1 2
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
.+.+.|.+.+++||+. .|. ++++...++.+.. .+|++=-. |+....++.
T Consensus 269 ~~~~~ik~~~~iPvi~------~Gg-it~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~~ 322 (362)
T 4ab4_A 269 SIGPLIKEAFGGPYIV------NER-FDKASANAALASGKADAVAFGVPFIANPDLPARLA 322 (362)
T ss_dssp CCHHHHHHHHCSCEEE------ESS-CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHCCCCEEE------eCC-CCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHH
Confidence 3455666667889886 232 3899999888644 45555444 777766665
No 158
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.66 E-value=3.3 Score=33.29 Aligned_cols=188 Identities=11% Similarity=0.082 Sum_probs=109.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCC---C------CcHHH------------------HHHHHHHHHhcCCCEE
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTY---C------ESTRA------------------TIDLTQKAAKAGANAA 54 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~---~------~~~~~------------------~i~~a~~a~~~Gad~v 54 (198)
++...+|.+++.++++...+. ++++|-..+ . .+..+ ..+.++.|.++|++.+
T Consensus 22 ~~~~~~~~e~k~~i~~~L~~~-Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~aG~~~v 100 (302)
T 2ftp_A 22 NEKQPIEVADKIRLVDDLSAA-GLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEV 100 (302)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT-TCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEECCSHHHHHHHHHTTCCEE
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEeCCHHHHHHHHhCCcCEE
Confidence 456788999999999988665 666544321 1 01111 2456678889999999
Q ss_pred EEcCCCCc-----CCCCCHHHHHHHHHHHHccC---CCCEEE-----EeCCCCcccccCHHHHHHHH----cC-CCEEEE
Q psy9711 55 LILCPYYF-----QKKMTEDLIYEHFISVADNS---PIPVII-----YNNTFVTNIDISVDTLVKLA----HH-ENIRGV 116 (198)
Q Consensus 55 ~~~~P~y~-----~~~~~~~~i~~y~~~i~~~~---~~pi~l-----Yn~P~~tg~~l~~~~l~~L~----~~-p~i~gi 116 (198)
++..+... +...+.++.++-.+++.+.. ++.+-. |..|.. + ..+++.+.+++ +. ...+.+
T Consensus 101 ~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~-~-~~~~~~~~~~~~~~~~~G~d~i~l 178 (302)
T 2ftp_A 101 AVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYD-G-DVDPRQVAWVARELQQMGCYEVSL 178 (302)
T ss_dssp EEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTT-B-CCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcC-C-CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 98544421 11123777777777776644 566542 344432 2 45677666665 33 578999
Q ss_pred eeC----CHHHHHHHHhh---cCC-CCeEEEecCh------hhHHHHhhcCCC---eEEe----------cccccchHHH
Q psy9711 117 KDT----DNIKLANMANQ---TKD-LNFSVFAGSA------GYLLSGLLVGCA---GGIN----------ALSAVLGGPI 169 (198)
Q Consensus 117 K~s----d~~~~~~~~~~---~~~-~~~~v~~G~d------~~~~~~l~~G~~---G~is----------~~~n~~P~~~ 169 (198)
+|+ .+..+.++++. ..+ -.+. +-|.+ .....++..|++ +.+. ..+|..-+.+
T Consensus 179 ~DT~G~~~P~~~~~lv~~l~~~~~~~~l~-~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E~l 257 (302)
T 2ftp_A 179 GDTIGVGTAGATRRLIEAVASEVPRERLA-GHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDV 257 (302)
T ss_dssp EESSSCCCHHHHHHHHHHHTTTSCGGGEE-EEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHHHH
T ss_pred eCCCCCcCHHHHHHHHHHHHHhCCCCeEE-EEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHHHH
Confidence 998 66665555432 221 2343 44432 135667888974 4455 3557766777
Q ss_pred HHHHHHHH--c-CCHHHHHHHHHHhhc
Q psy9711 170 CELYDLAK--A-GKWEEAMKLQHRLVK 193 (198)
Q Consensus 170 ~~l~~~~~--~-gd~~~A~~l~~~~~~ 193 (198)
+.+.+... . =|.++-.++.+.+..
T Consensus 258 v~~l~~~g~~~~idl~~l~~~~~~~~~ 284 (302)
T 2ftp_A 258 LYLLNGLEIHTGVDMHALVDAGQRICA 284 (302)
T ss_dssp HHHHHHTTCBCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 66666431 1 256666655555443
No 159
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=92.65 E-value=0.84 Score=38.00 Aligned_cols=105 Identities=4% Similarity=-0.071 Sum_probs=69.0
Q ss_pred CHHHHHH----HHHHHHHhc-CCeEEEeCCCC----------cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 8 TEEEKLK----IISTLRQET-KKTIIAGTYCE----------STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 8 t~~Er~~----l~~~~~~~~-~~pvi~gv~~~----------~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
|.+-|.+ +++.+++++ .-||.+=++.. +.++++++++.++++|+|.+-+..+.+. .
T Consensus 206 slenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~-----~---- 276 (361)
T 3gka_A 206 SIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFGG-----D---- 276 (361)
T ss_dssp SHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCST-----T----
T ss_pred ChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCCC-----H----
Confidence 4555654 444555444 22787755442 2577899999999999999999877621 2
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
.+.+.|.+.+++||+. .|. ++++...++.+.. .+|++=-. |+....++.
T Consensus 277 ~~~~~ik~~~~iPvi~------~Gg-it~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~~ 330 (361)
T 3gka_A 277 AIGQQLKAAFGGPFIV------NEN-FTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFK 330 (361)
T ss_dssp CCHHHHHHHHCSCEEE------ESS-CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHcCCCEEE------eCC-CCHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHH
Confidence 3455666666889886 232 3899999888644 45555443 777666665
No 160
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=92.62 E-value=0.91 Score=38.01 Aligned_cols=119 Identities=7% Similarity=0.068 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHH-ccCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVA-DNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~-~~~~ 83 (198)
+.++-.+.++.+++++ ++++.+=+ ++-+.+++++.++..++.|++.+ --|. .+. + .+.+++|. ++++
T Consensus 177 ~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~~ 247 (389)
T 3ozy_A 177 APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWF--EEPL--SID--D---IEGHRILRAQGTP 247 (389)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEE--ESCS--CTT--C---HHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--c---HHHHHHHHhcCCC
Confidence 4566677888888887 78888754 55678999999999999998755 3454 121 1 34578888 8899
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+||+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++......-++.+..+
T Consensus 248 iPIa~dE------~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h 304 (389)
T 3ozy_A 248 VRIATGE------NLYTRNAFNDYIRNDAIDVLQADASRAGGITEALAISASAASAHLAWNPH 304 (389)
T ss_dssp SEEEECT------TCCHHHHHHHHHHTTCCSEECCCTTTSSCHHHHHHHHHHHHHTTCEECCC
T ss_pred CCEEeCC------CCCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEec
Confidence 9998732 2346778888874 4689999988 4554444432111234555544
No 161
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=92.61 E-value=2.6 Score=32.67 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHhcCC-eEEEeCC------C-C-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQETKK-TIIAGTY------C-E-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIY 72 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~-pvi~gv~------~-~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~ 72 (198)
.++.++..++.+.+.+. ++ ++.++.. + . +.+...+.++.|+++|+..+.+.|... + ++.+.
T Consensus 45 ~~~~~~~~~~~~~~~~~-gl~~~~~h~~~~~~l~s~~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~---~--~~~~~ 118 (270)
T 3aam_A 45 ALSPAEVEAFRALREAS-GGLPAVIHASYLVNLGAEGELWEKSVASLADDLEKAALLGVEYVVVHPGSG---R--PERVK 118 (270)
T ss_dssp CCCHHHHHHHHHHHHHT-TCCCEEEECCTTCCTTCSSTHHHHHHHHHHHHHHHHHHHTCCEEEECCCBS---C--HHHHH
T ss_pred CCCHHHHHHHHHHHHHc-CCceEEEecCcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC---C--HHHHH
Confidence 45677777776666554 66 5544432 1 1 123445667788899999988776654 4 58888
Q ss_pred HHHHHHHcc----CCCCEEEEeCCCCccccc--CHHHHHHHHc-CCCEE
Q psy9711 73 EHFISVADN----SPIPVIIYNNTFVTNIDI--SVDTLVKLAH-HENIR 114 (198)
Q Consensus 73 ~y~~~i~~~----~~~pi~lYn~P~~tg~~l--~~~~l~~L~~-~p~i~ 114 (198)
+.++.+++. .++.+.+=|.|.. +..+ +++.+.+|.+ + |+-
T Consensus 119 ~~l~~l~~~a~~~~gv~l~lEn~~~~-~~~~~~~~~~~~~l~~~v-~vg 165 (270)
T 3aam_A 119 EGALKALRLAGVRSRPVLLVENTAGG-GEKVGARFEELAWLVADT-PLQ 165 (270)
T ss_dssp HHHHHHHHHHTCCSSSEEEEECCCCC-TTBSCCSHHHHHHHHTTS-SCE
T ss_pred HHHHHHHHhhcccCCCEEEEecCCCC-CCccCCCHHHHHHHHHhC-CEE
Confidence 888888765 3688888888643 2333 8999999984 6 443
No 162
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=92.61 E-value=0.74 Score=38.08 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHH-HHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATI-DLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i-~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.++-.+.++.++++. ++++.+-+ ++.+.++++ ++++..++.|++. +--|. .+. + .+.++.+.++++
T Consensus 167 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~--iEqP~--~~~--d---~~~~~~l~~~~~ 237 (369)
T 2p8b_A 167 NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDW--IEQPV--IAD--D---IDAMAHIRSKTD 237 (369)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSC--EECCB--CTT--C---HHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcE--EECCC--Ccc--c---HHHHHHHHHhCC
Confidence 3455667788888877 78887755 445678999 9999999988874 34553 221 2 456778888889
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+||+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++......-++.+..|
T Consensus 238 iPI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~A~~~g~~~~~~ 294 (369)
T 2p8b_A 238 LPLMIDE------GLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVG 294 (369)
T ss_dssp SCEEEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEeCC------CCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHHHHHHHHcCCcEEec
Confidence 9998732 2357888888874 5689999987 4544444332111234555544
No 163
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=92.55 E-value=1.9 Score=35.88 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCC
Q psy9711 7 STEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIP 85 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~p 85 (198)
+|.+|..+.++ .++..+.+.++. ..+..++++.+.++|+|.+.+-.+.- . .+.+.+..+.|-+.. ++|
T Consensus 75 ~s~ee~~~~i~----~~~~~~~~~~g~--~~~~~e~~~~a~~aGvdvI~id~a~G---~--~~~~~e~I~~ir~~~~~~~ 143 (361)
T 3r2g_A 75 MTIEENIQEFK----KCKGPVFVSVGC--TENELQRAEALRDAGADFFCVDVAHA---H--AKYVGKTLKSLRQLLGSRC 143 (361)
T ss_dssp SCHHHHHHHHH----TCCSCCBEEECS--SHHHHHHHHHHHHTTCCEEEEECSCC---S--SHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHh----hcceEEEEEcCC--CHHHHHHHHHHHHcCCCEEEEeCCCC---C--cHhHHHHHHHHHHhcCCCe
Confidence 56666554332 223233333332 36788899999999999777754431 1 344555666666665 689
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-CH--------------HHHHHHHhhcCCCCeEEE-e-cC--hhhH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-DN--------------IKLANMANQTKDLNFSVF-A-GS--AGYL 146 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-d~--------------~~~~~~~~~~~~~~~~v~-~-G~--d~~~ 146 (198)
|+.=| ..+++...++.+. .+-+||.+ .. ..+..+......-+ .|+ . |. ...+
T Consensus 144 Vi~G~-------V~T~e~A~~a~~a-GaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~-PVIAdGGI~~~~di 214 (361)
T 3r2g_A 144 IMAGN-------VATYAGADYLASC-GADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADR-SIVADGGIKTSGDI 214 (361)
T ss_dssp EEEEE-------ECSHHHHHHHHHT-TCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSS-EEEEESCCCSHHHH
T ss_pred EEEcC-------cCCHHHHHHHHHc-CCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCC-CEEEECCCCCHHHH
Confidence 88733 3567777777653 45556644 10 12222221111111 343 3 33 2457
Q ss_pred HHHhhcCCCeEEecccccch
Q psy9711 147 LSGLLVGCAGGINALSAVLG 166 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~n~~P 166 (198)
..++.+|+++++.|..-+.+
T Consensus 215 ~kALa~GAd~V~iGr~f~~t 234 (361)
T 3r2g_A 215 VKALAFGADFVMIGGMLAGS 234 (361)
T ss_dssp HHHHHTTCSEEEESGGGTTB
T ss_pred HHHHHcCCCEEEEChHHhCC
Confidence 78899999999988764433
No 164
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=92.50 E-value=0.46 Score=39.97 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++++ ++++.+-+ +..+.++++++++..++.|++ .+--|. .+. + .+.++.|.+++++||
T Consensus 202 ~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~--~iE~P~--~~~--~---~~~~~~l~~~~~iPI 272 (410)
T 2gl5_A 202 KMGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIF--LYEEPI--HPL--N---SDNMQKVSRSTTIPI 272 (410)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEE--EEECSS--CSS--C---HHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--eEECCC--Chh--h---HHHHHHHHhhCCCCE
Confidence 44457788888876 78888865 455789999999999998765 444554 121 2 466788888899999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++.+....-++.+..+
T Consensus 273 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~gi~~~~h 326 (410)
T 2gl5_A 273 ATGE------RSYTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVH 326 (410)
T ss_dssp EECT------TCCTTHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEECCC
T ss_pred EecC------CcCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeec
Confidence 8733 2346788888884 4689999987 3443333332112234555544
No 165
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=92.47 E-value=1.6 Score=36.90 Aligned_cols=114 Identities=14% Similarity=0.148 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE--
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV-- 116 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi-- 116 (198)
.++++.+.++|+|.+.+-... .. ++.+.+..+.+.+..++||+.-| ..+++...++.+. ...+.+
T Consensus 146 ~e~~~~lveaGvdvIvldta~---G~--~~~~~e~I~~ik~~~~i~Vi~g~-------V~t~e~A~~a~~aGAD~I~vG~ 213 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAH---GH--SLNIIRTLKEIKSKMNIDVIVGN-------VVTEEATKELIENGADGIKVGI 213 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSC---CS--BHHHHHHHHHHHTTCCCEEEEEE-------ECSHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCC---CC--cccHHHHHHHHHhcCCCeEEEee-------cCCHHHHHHHHHcCCCEEEEeC
Confidence 788899999999988874322 12 56677788888887789998743 3567777777754 222222
Q ss_pred --------ee--C----CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccccc
Q psy9711 117 --------KD--T----DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 117 --------K~--s----d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
++ . ++..+.++.......++.|+. |. ...+..++.+|++|++.|...+.
T Consensus 214 g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~ 280 (400)
T 3ffs_A 214 GPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAG 280 (400)
T ss_dssp ---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTT
T ss_pred CCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhc
Confidence 10 0 122233333211123455654 43 24677889999999998876443
No 166
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=92.40 E-value=0.64 Score=38.90 Aligned_cols=104 Identities=11% Similarity=-0.085 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++.+-+ ++-+.+++++.++..++.|++. +--|.- +. -.+.++.|.+++++|
T Consensus 193 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~~--~~-----d~~~~~~l~~~~~iP 263 (392)
T 1tzz_A 193 IEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFW--YEEVGD--PL-----DYALQAALAEFYPGP 263 (392)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSE--EECCSC--TT-----CHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCe--ecCCCC--hh-----hHHHHHHHHhhCCCC
Confidence 455567777777766 68887755 4557889999999988888774 344531 11 246678888888899
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc------CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH------HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~------~p~i~giK~s---d~~~~~~~ 127 (198)
|+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 264 Ia~dE------~~~~~~~~~~~i~~~~~~~~~d~v~ik~~~~GGit~~~~i 308 (392)
T 1tzz_A 264 MATGE------NLFSHQDARNLLRYGGMRPDRDWLQFDCALSYGLCEYQRT 308 (392)
T ss_dssp EEECT------TCCSHHHHHHHHHHSCCCTTTCEECCCTTTTTCHHHHHHH
T ss_pred EEECC------CCCCHHHHHHHHHcCCCccCCcEEEECccccCCHHHHHHH
Confidence 88733 2346777888774 4688888887 45444333
No 167
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=92.39 E-value=0.84 Score=38.30 Aligned_cols=118 Identities=9% Similarity=0.045 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++.+-+ +..+.+++++.++..++.|++. +--|. .+ +-.+.++.|.+++++|
T Consensus 203 ~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~--iEqP~--~~-----~d~~~~~~l~~~~~iP 273 (398)
T 2pp0_A 203 CAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIW--IEEPL--DA-----YDIEGHAQLAAALDTP 273 (398)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSC--EECCS--CT-----TCHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCce--eeCCC--Ch-----hhHHHHHHHHhhCCCC
Confidence 445566777777775 67887754 4557889999999998888874 33443 11 1245667777888899
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++......-++.+..+
T Consensus 274 Ia~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~~~i~~~A~~~gi~~~~h 328 (398)
T 2pp0_A 274 IATGE------MLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPH 328 (398)
T ss_dssp EEECT------TCCSHHHHHHHHHTTCCSEECCCHHHHTSHHHHHHHHHHHHHTTCEECCC
T ss_pred EEecC------CcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEeec
Confidence 88733 2346788888874 4688888887 4544433332111234555544
No 168
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=92.36 E-value=0.69 Score=38.67 Aligned_cols=112 Identities=6% Similarity=-0.008 Sum_probs=70.8
Q ss_pred HHHHHHH----HHHHHHhcC-CeEEEeCCC----------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHH
Q psy9711 9 EEEKLKI----ISTLRQETK-KTIIAGTYC----------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYE 73 (198)
Q Consensus 9 ~~Er~~l----~~~~~~~~~-~pvi~gv~~----------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~ 73 (198)
.+.|.++ ++.++++++ -||.+=++. .+.++++++++.+++.|+|.+-+..+.+.... +...-.+
T Consensus 213 lenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~-~~~~~~~ 291 (376)
T 1icp_A 213 LENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAW-EKIECTE 291 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC-------CCC
T ss_pred HHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCC-CccccHH
Confidence 4666444 455555542 288765542 24668899999999999999999877653211 0001124
Q ss_pred HHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 74 HFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 74 y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
+.+.|.+++++||+. + .| ++++...++.+.. .+|++=-. |+....++.
T Consensus 292 ~~~~vr~~~~iPvi~-~----G~--i~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~ 344 (376)
T 1icp_A 292 SLVPMRKAYKGTFIV-A----GG--YDREDGNRALIEDRADLVAYGRLFISNPDLPKRFE 344 (376)
T ss_dssp CSHHHHHHCCSCEEE-E----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred HHHHHHHHcCCCEEE-e----CC--CCHHHHHHHHHCCCCcEEeecHHHHhCccHHHHHH
Confidence 456777788899886 1 23 3788888888544 45555444 777766665
No 169
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=92.30 E-value=3.1 Score=33.77 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhc---------CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 9 EEEKLKIISTLRQET---------KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~---------~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
.+.-.++++.+.+.+ ++||++=++. .+.++..+.++.++++|+|++.+..-
T Consensus 187 ~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 187 GEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 334457777777765 7899997764 34568899999999999999999854
No 170
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=92.28 E-value=2.9 Score=33.05 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 94 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~ 94 (198)
-++.+.+.+.+||+-==--.+. -++..|...|||+++++.-. .+ ++++.+ +.+.|...++.+++=-
T Consensus 95 ~L~~vr~~v~lPvLrKDFiid~----yQI~eAr~~GADaILLI~a~---L~--~~~l~~-l~~~A~~lGl~~LvEV---- 160 (258)
T 4a29_A 95 TLRKIASSVSIPILMSDFIVKE----SQIDDAYNLGADTVLLIVKI---LT--ERELES-LLEYARSYGMEPLILI---- 160 (258)
T ss_dssp HHHHHHTTCSSCEEEESCCCSH----HHHHHHHHHTCSEEEEEGGG---SC--HHHHHH-HHHHHHHTTCCCEEEE----
T ss_pred HHHHHHHhcCCCEeeccccccH----HHHHHHHHcCCCeeehHHhh---cC--HHHHHH-HHHHHHHHhHHHHHhc----
Confidence 3445554447888653111111 34556677899999998655 33 666555 4456677888776632
Q ss_pred cccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEE--ecChh--hHHHHhhcCCCeEEeccc
Q psy9711 95 TNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVF--AGSAG--YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 95 tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~--~G~d~--~~~~~l~~G~~G~is~~~ 162 (198)
=+.+.+.+-.+ -+.++||-.- |+....++.. ..+++..+. +|..+ ........|++|++-|.+
T Consensus 161 ----h~~~El~rAl~~~a~iIGINNRnL~tf~vdl~~t~~L~~-~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGea 235 (258)
T 4a29_A 161 ----NDENDLDIALRIGARFIGIMSRDFETGEINKENQRKLIS-MIPSNVVKVAKLGISERNEIEELRKLGVNAFLISSS 235 (258)
T ss_dssp ----SSHHHHHHHHHTTCSEEEECSBCTTTCCBCHHHHHHHHT-TSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECHH
T ss_pred ----chHHHHHHHhcCCCcEEEEeCCCccccccCHHHHHHHHh-hCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHH
Confidence 13556666554 5799999532 7788878774 455555444 35432 345566789999998876
Q ss_pred cc-chHHHHHH
Q psy9711 163 AV-LGGPICEL 172 (198)
Q Consensus 163 n~-~P~~~~~l 172 (198)
-+ .|+...++
T Consensus 236 lmr~~d~~~~L 246 (258)
T 4a29_A 236 LMRNPEKIKEL 246 (258)
T ss_dssp HHHCTTHHHHH
T ss_pred HhCCCcHHHHH
Confidence 33 24443333
No 171
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}
Probab=92.27 E-value=0.63 Score=39.52 Aligned_cols=104 Identities=9% Similarity=0.071 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-C
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-I 84 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~ 84 (198)
.++-.+.++.++++. ++++.+-+ ++.+.++++++++..++.|++. +--|. .+ +-.+.++.|.++++ +
T Consensus 212 ~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~--iEqP~--~~-----~d~~~~~~l~~~~~~i 282 (428)
T 3bjs_A 212 ARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGW--LEEPF--AC-----NDFASYREVAKITPLV 282 (428)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSC--EECCS--CT-----TCHHHHHHHTTTCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCE--EECCC--Cc-----cCHHHHHHHHHhCCCC
Confidence 455567788888876 78887755 4557899999999999999884 34443 11 12567788888888 9
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
||+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 283 PIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGitea~~i 324 (428)
T 3bjs_A 283 PIAAGE------NHYTRFEFGQMLDAGAVQVWQPDLSKCGGITEGIRI 324 (428)
T ss_dssp CEEECT------TCCSHHHHHHHHTTCCEEEECCBTTTSSCHHHHHHH
T ss_pred cEEcCC------CcCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHH
Confidence 998733 3356788888884 3578888987 45444333
No 172
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=92.25 E-value=1.9 Score=36.33 Aligned_cols=114 Identities=4% Similarity=0.020 Sum_probs=73.8
Q ss_pred CHHHHHHH----HHHHHHhc-CCeEEEeCCCC----------cHHHHHHHHHHHHhcC------CCEEEEcCCCCcC---
Q psy9711 8 TEEEKLKI----ISTLRQET-KKTIIAGTYCE----------STRATIDLTQKAAKAG------ANAALILCPYYFQ--- 63 (198)
Q Consensus 8 t~~Er~~l----~~~~~~~~-~~pvi~gv~~~----------~~~~~i~~a~~a~~~G------ad~v~~~~P~y~~--- 63 (198)
|.+.|.++ ++.+++++ ..||.+=++.. +.++++++++.+++.| +|.+-+..+.+..
T Consensus 216 slenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~ 295 (402)
T 2hsa_B 216 SLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQ 295 (402)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTT
T ss_pred ChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccC
Confidence 35666554 44444444 34777655432 4578999999999999 9999998775432
Q ss_pred -CC--CCHH-HHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 64 -KK--MTED-LIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 64 -~~--~~~~-~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
+. .+.. .-.++.+.|.+.+++||+. + .| ++++...++.+.. .+|++=-. |+....++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~vk~~~~iPvi~-~----G~--i~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~ 362 (402)
T 2hsa_B 296 TEAGRLGSEEEEARLMRTLRNAYQGTFIC-S----GG--YTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIK 362 (402)
T ss_dssp SSSTTTTHHHHHHHHHHHHHHHCSSCEEE-E----SS--CCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred CccccccCCcchHHHHHHHHHHCCCCEEE-e----CC--CCHHHHHHHHHCCCCceeeecHHHHhCchHHHHHH
Confidence 10 0011 2356677888888999886 2 23 3889999888644 45555443 777776665
No 173
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=92.13 E-value=1.4 Score=36.75 Aligned_cols=82 Identities=10% Similarity=0.006 Sum_probs=62.6
Q ss_pred CCCCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
...|.+|-.+.+..+++.+ +..|..+. +..+.+..++.++.+.++|++.+.+.--. ... +|.++.+.++.+
T Consensus 119 l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~~~~lv~~l 195 (370)
T 3rmj_A 119 LKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIPDTV-GYS--IPYKTEEFFREL 195 (370)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEEECSS-SCC--CHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEEEecCcc-CCc--CHHHHHHHHHHH
Confidence 3567888888877777777 55566664 55678889999999999999987765433 333 499999999999
Q ss_pred HccCC----CCEEEE
Q psy9711 79 ADNSP----IPVIIY 89 (198)
Q Consensus 79 ~~~~~----~pi~lY 89 (198)
.+..+ +|+-++
T Consensus 196 ~~~~~~~~~~~l~~H 210 (370)
T 3rmj_A 196 IAKTPNGGKVVWSAH 210 (370)
T ss_dssp HHHSTTGGGSEEEEE
T ss_pred HHhCCCcCceEEEEE
Confidence 98885 778776
No 174
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=92.10 E-value=0.4 Score=38.87 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=49.1
Q ss_pred HHHHHHhcCCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 16 ISTLRQETKKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 16 ~~~~~~~~~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
++.+++.+++||++-=|. .+.++++++++.+.++|++++.+..-.|..++ +..+.+-++.+..
T Consensus 215 ~~~vv~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~d--p~~~~~al~~ivh 278 (295)
T 3glc_A 215 FERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDH--PVAMMKAVQAVVH 278 (295)
T ss_dssp HHHHHHTCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSS--HHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcC--HHHHHHHHHHHHh
Confidence 344555558898773332 26799999999999999999999988888776 8888888887754
No 175
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=92.08 E-value=4.1 Score=33.89 Aligned_cols=139 Identities=17% Similarity=0.156 Sum_probs=80.3
Q ss_pred HHHHHhc-CCeEEEeCCCC------cHHHHHHHHHHHHhcCCCEEEEcCCCC---cCCC--CCHH-HHHHHHHHHHccCC
Q psy9711 17 STLRQET-KKTIIAGTYCE------STRATIDLTQKAAKAGANAALILCPYY---FQKK--MTED-LIYEHFISVADNSP 83 (198)
Q Consensus 17 ~~~~~~~-~~pvi~gv~~~------~~~~~i~~a~~a~~~Gad~v~~~~P~y---~~~~--~~~~-~i~~y~~~i~~~~~ 83 (198)
+.+.+.+ ..|++++++.. +.+.+.+.++. +++++..+--+.. ..|. .+.. +..+..+.|.+.++
T Consensus 111 ~~vr~~ap~~~~~anlg~~ql~~~~~~~~~~~av~~---~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~ 187 (368)
T 3vkj_A 111 AIVRKVAPTIPIIANLGMPQLVKGYGLKEFQDAIQM---IEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELS 187 (368)
T ss_dssp HHHHHHCSSSCEEEEEEGGGGGTTCCHHHHHHHHHH---TTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCS
T ss_pred HHHHHhCcCcceecCcCeeecCCCCCHHHHHHHHHH---hcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcC
Confidence 4455566 89999987773 33333333333 3677777653221 1111 0011 57888999999999
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHH------------------------------HHHHHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNI------------------------------KLANMA 128 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~------------------------------~~~~~~ 128 (198)
+||++=- .|..++++...++.+. .+.+|..+ +.. .+.++.
T Consensus 188 vPVivK~----vG~g~s~~~A~~l~~a-Gad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~ 262 (368)
T 3vkj_A 188 VPIIVKE----SGNGISMETAKLLYSY-GIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVR 262 (368)
T ss_dssp SCEEEEC----SSSCCCHHHHHHHHHT-TCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHH
T ss_pred CCEEEEe----CCCCCCHHHHHHHHhC-CCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHH
Confidence 9999954 4556788888877754 24444442 111 111222
Q ss_pred hhcCCCCeEEE-ecC---hhhHHHHhhcCCCeEEecccccc
Q psy9711 129 NQTKDLNFSVF-AGS---AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 129 ~~~~~~~~~v~-~G~---d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
+.. +++.|+ +|. ......++.+|++++..+...++
T Consensus 263 -~~~-~~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 263 -YSV-PDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLK 301 (368)
T ss_dssp -HHS-TTCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred -HHc-CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 222 245554 332 23467888999999998875443
No 176
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=92.06 E-value=2.7 Score=32.62 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccccchHHHHHHHH
Q psy9711 122 IKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVLGGPICELYD 174 (198)
Q Consensus 122 ~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~ 174 (198)
....++++. ..++..++.|.. ....-....|.||+.-|.+.+-++-+.++.+
T Consensus 161 ~~~~~~ir~-~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~ 216 (226)
T 1w0m_A 161 VETVGLVSR-HFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIV 216 (226)
T ss_dssp HHHHHHHHH-HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHH
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHH
Confidence 333444433 235566665543 1222335679999999988765544444443
No 177
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=91.95 E-value=0.77 Score=38.64 Aligned_cols=95 Identities=8% Similarity=-0.001 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++++ ++++.+-+ +..+.++++++++..++.|++. +--|. .+ +-.+.++.|.+++++||
T Consensus 194 ~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEeP~--~~-----~d~~~~~~l~~~~~iPI 264 (410)
T 2qq6_A 194 EAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLW--LEEPT--PP-----ENLDALAEVRRSTSTPI 264 (410)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSE--EECCS--CT-----TCHHHHHHHHTTCSSCE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCe--EECCC--Ch-----hhHHHHHHHHhhCCCCE
Confidence 44457778888776 78888765 4557899999999999999874 34453 11 12567788888899999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+.=. .-.+++.+.++.+ .-+++-+|-+
T Consensus 265 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~ 293 (410)
T 2qq6_A 265 CAGE------NVYTRFDFRELFAKRAVDYVMPDVA 293 (410)
T ss_dssp EECT------TCCSHHHHHHHHHTTCCSEECCBHH
T ss_pred EeCC------CcCCHHHHHHHHHcCCCCEEecCcc
Confidence 8733 2347888898884 4689999987
No 178
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=91.92 E-value=3.3 Score=33.61 Aligned_cols=154 Identities=11% Similarity=0.055 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-C----CCcCCC---CCHHHHHHHHHHHHccC
Q psy9711 12 KLKIISTLRQETKKT-IIAGTYCESTRATIDLTQKAAKAGANAALILC-P----YYFQKK---MTEDLIYEHFISVADNS 82 (198)
Q Consensus 12 r~~l~~~~~~~~~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-P----~y~~~~---~~~~~i~~y~~~i~~~~ 82 (198)
+.+-++...+.-+.| ++.++-+..+ ++.++++|++++.+.. - .+..|+ .|-+++..|-+.|++.+
T Consensus 12 ~a~~lr~ll~~~~~~i~~~~a~D~~s------A~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~ 85 (307)
T 3lye_A 12 GAKKLRHLLENTDELIVCPGVYDGLS------ARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLD 85 (307)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECSHHH------HHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhCCCCeEEEecCcCHHH------HHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccC
Confidence 344445554443334 4668877543 5566678999999842 1 111222 35899999999999987
Q ss_pred C--CCEEEEeCCCCcccccCHHH----HHHHHcCCCEEEEeeC--C-H------------------HHHHHHHh--hcCC
Q psy9711 83 P--IPVIIYNNTFVTNIDISVDT----LVKLAHHENIRGVKDT--D-N------------------IKLANMAN--QTKD 133 (198)
Q Consensus 83 ~--~pi~lYn~P~~tg~~l~~~~----l~~L~~~p~i~giK~s--d-~------------------~~~~~~~~--~~~~ 133 (198)
+ +| ++-|.|.-.| +++. ++++.+ -.+.|+|.+ . + .+++.... +..+
T Consensus 86 ~~~~P-viaD~d~Gyg---~~~~v~~~v~~l~~-aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~ 160 (307)
T 3lye_A 86 PFGPP-LIADMDTGYG---GPIMVARTVEHYIR-SGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR 160 (307)
T ss_dssp TTSCC-EEEECTTCSS---SHHHHHHHHHHHHH-TTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCc-EEEECCCCCC---CHHHHHHHHHHHHH-cCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC
Confidence 6 89 5678885433 3433 333433 579999988 1 1 12222221 1136
Q ss_pred CCeEEEecChhhHH-----------HHhhcCCCeEEecccccchHHHHHHHHHHH
Q psy9711 134 LNFSVFAGSAGYLL-----------SGLLVGCAGGINALSAVLGGPICELYDLAK 177 (198)
Q Consensus 134 ~~~~v~~G~d~~~~-----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~~ 177 (198)
++|.|..=.|.... ....+|+|++..-. ---++.+.++.+++.
T Consensus 161 ~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~-~~~~~~~~~i~~~~~ 214 (307)
T 3lye_A 161 SDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEG-FRSKEQAAAAVAALA 214 (307)
T ss_dssp CCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECC-CSCHHHHHHHHHHHT
T ss_pred CCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecC-CCCHHHHHHHHHHcc
Confidence 78887765554321 12568999886432 124567777777653
No 179
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=91.91 E-value=0.73 Score=38.71 Aligned_cols=98 Identities=8% Similarity=-0.043 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHhc--CCeEEEeCC-CC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 7 STEEEKLKIISTLRQET--KKTIIAGTY-CE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~--~~pvi~gv~-~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
.+.++-.+.++.++++. ++++++-+. +- +.++++++++..++.|++.+ -.|. .+ ++ .+.++.|.+++
T Consensus 186 ~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~i--EeP~--~~----~d-~~~~~~l~~~~ 256 (394)
T 3mkc_A 186 WSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFA--EATL--QH----DD-LSGHAKLVENT 256 (394)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEE--ESCS--CT----TC-HHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEE--ECCC--Cc----hh-HHHHHHHHhhC
Confidence 35677778888888887 889988663 44 78999999999999988754 3454 12 11 35678888889
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
++||+.=. .-.+++.+.++.+ .-.++.+|-+
T Consensus 257 ~iPIa~dE------~~~~~~~~~~~l~~~~~d~v~~k~~ 289 (394)
T 3mkc_A 257 RSRICGAE------MSTTRFEAEEWITKGKVHLLQSDYN 289 (394)
T ss_dssp SSCBEECT------TCCHHHHHHHHHHTTCCSEECCCTT
T ss_pred CCCEEeCC------CCCCHHHHHHHHHcCCCCeEecCcc
Confidence 99998732 2345778888884 4589999988
No 180
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=91.89 E-value=0.71 Score=38.74 Aligned_cols=105 Identities=6% Similarity=-0.080 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeCC-CC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGTY-CE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv~-~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.++-.+.++.+++++ ++++++-+. +- +.++++++++..++.|++.+ -.|.- + ++ .+.++.|.++++
T Consensus 182 ~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~i--EeP~~--~----~~-~~~~~~l~~~~~ 252 (394)
T 3mqt_A 182 SDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFI--EACLQ--H----DD-LIGHQKLAAAIN 252 (394)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEE--ESCSC--T----TC-HHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEE--ECCCC--c----cc-HHHHHHHHhhCC
Confidence 4667778888888887 889988663 44 68999999999999998755 34541 2 11 356788888899
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
+||+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++
T Consensus 253 iPIa~dE------~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i 295 (394)
T 3mqt_A 253 TRLCGAE------MSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRI 295 (394)
T ss_dssp SEEEECT------TCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHH
T ss_pred CCEEeCC------CcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHH
Confidence 9998733 2345777888873 5689999988 45544443
No 181
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=91.84 E-value=0.68 Score=38.69 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++ .++++.+++++ ++++.+-+ ++.+.+++++.++..++.|++.+ -.|. .+. -.+.++.+.+++++||
T Consensus 193 ~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~-----d~~~~~~l~~~~~iPI 262 (388)
T 2nql_A 193 GP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFA--EAPV--WTE-----DIAGLEKVSKNTDVPI 262 (388)
T ss_dssp CH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE--ECCS--CTT-----CHHHHHHHHTSCCSCE
T ss_pred HH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE--ECCC--Chh-----hHHHHHHHHhhCCCCE
Confidence 45 78888888877 78888755 45578999999999999998854 4553 121 2467788888889999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC--CHHHHHHH
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT--DNIKLANM 127 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s--d~~~~~~~ 127 (198)
+.=. .-.+++.+.++.+ .-+++.+|-+ .+....++
T Consensus 263 ~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~GGit~~~~i 301 (388)
T 2nql_A 263 AVGE------EWRTHWDMRARIERCRIAIVQPEMGHKGITNFIRI 301 (388)
T ss_dssp EECT------TCCSHHHHHHHHTTSCCSEECCCHHHHCHHHHHHH
T ss_pred EEeC------CcCCHHHHHHHHHcCCCCEEEecCCCCCHHHHHHH
Confidence 8733 3347888998884 4688888877 55444433
No 182
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=91.83 E-value=1.4 Score=36.81 Aligned_cols=106 Identities=9% Similarity=0.096 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-C
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-P 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~ 83 (198)
+.++-.+.++.++++. ++++.+-+ ++.+.++++++++..++.|.+-.++--|. .+. + .+.++.|.+++ +
T Consensus 172 ~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iEqP~--~~~--~---~~~~~~l~~~~~~ 244 (389)
T 2oz8_A 172 DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDPI--LRH--D---HDGLRTLRHAVTW 244 (389)
T ss_dssp SHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEESCB--CTT--C---HHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEeCCC--CCc--C---HHHHHHHHhhCCC
Confidence 3455567888888877 78888755 45578999999999999444434555564 221 1 45677888888 8
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~ 128 (198)
+||+.= +.- +++.+.++.+ .-+++.+| . ...++.++.
T Consensus 245 iPIa~d------E~~-~~~~~~~~i~~~~~d~v~ik-GGit~a~~i~~~A 286 (389)
T 2oz8_A 245 TQINSG------EYL-DLQGKRLLLEAHAADILNVH-GQVTDVMRIGWLA 286 (389)
T ss_dssp SEEEEC------TTC-CHHHHHHHHHTTCCSEEEEC-SCHHHHHHHHHHH
T ss_pred CCEEeC------CCC-CHHHHHHHHHcCCCCEEEEC-cCHHHHHHHHHHH
Confidence 998872 334 7888888874 46899999 7 334444444
No 183
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=91.81 E-value=0.93 Score=39.11 Aligned_cols=114 Identities=15% Similarity=0.194 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 115 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g 115 (198)
.+..+.++.+.++|+|++.+..-. .. .....+..+.+.+.+ ++||++ |...+++...++.+. .+-+
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~---G~--~~~~~e~i~~i~~~~p~~pvi~-------g~~~t~e~a~~l~~~-G~d~ 302 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAH---GH--SRRVIETLEMIKADYPDLPVVA-------GNVATPEGTEALIKA-GADA 302 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC---CS--SHHHHHHHHHHHHHCTTSCEEE-------EEECSHHHHHHHHHT-TCSE
T ss_pred HhHHHHHHHHHHhCCCEEEEEecC---Cc--hHHHHHHHHHHHHHCCCceEEe-------CCcCCHHHHHHHHHc-CCCE
Confidence 556778889999999999985332 12 556778888888888 699987 335678888777764 3555
Q ss_pred EeeC------------------CHHHHHHHHhhcCCCCeEEEe--cC--hhhHHHHhhcCCCeEEecccc
Q psy9711 116 VKDT------------------DNIKLANMANQTKDLNFSVFA--GS--AGYLLSGLLVGCAGGINALSA 163 (198)
Q Consensus 116 iK~s------------------d~~~~~~~~~~~~~~~~~v~~--G~--d~~~~~~l~~G~~G~is~~~n 163 (198)
|+.+ ....+..+.+.....++.|+. |. ......++.+|++++..|.+.
T Consensus 303 I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~ 372 (494)
T 1vrd_A 303 VKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIF 372 (494)
T ss_dssp EEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred EEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 5542 111122222111112455554 43 235778899999999977654
No 184
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=91.80 E-value=4 Score=33.93 Aligned_cols=53 Identities=9% Similarity=0.225 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHh-------cCCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 8 TEEEKLKIISTLRQE-------TKKTIIAGTYCE-STRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 8 t~~Er~~l~~~~~~~-------~~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
+++.-.++++.+.++ .++||++=++.. +.++..+.++.++++|+|++.+..-.
T Consensus 197 ~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt 257 (367)
T 3zwt_A 197 GKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTT 257 (367)
T ss_dssp SHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCB
T ss_pred CHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345556788887764 278999876543 44688999999999999999998654
No 185
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*
Probab=91.78 E-value=1.3 Score=37.03 Aligned_cols=119 Identities=10% Similarity=0.098 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHhc--CCeEE-EeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTII-AGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi-~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.++-.+.++.++++. +++++ +=+ ++-+.+++++.++..++.|++...+--|.- +. + .+.++.|.++++
T Consensus 168 ~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iEqP~~--~~--d---~~~~~~l~~~~~ 240 (391)
T 3gd6_A 168 NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIESPAP--RN--D---FDGLYQLRLKTD 240 (391)
T ss_dssp CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEECCSC--TT--C---HHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceecCCCC--hh--h---HHHHHHHHHHcC
Confidence 4566677888888886 78888 644 556789999999999999874345556641 21 2 456788888899
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+|| +- ...+++.+.++.+ .-.++-+|-+ .+....++......-++.+..|
T Consensus 241 iPI---dE-----~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~ 295 (391)
T 3gd6_A 241 YPI---SE-----HVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLG 295 (391)
T ss_dssp SCE---EE-----ECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCc---CC-----CCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCEEEec
Confidence 998 32 2356888888884 5689999988 4554444432111234556544
No 186
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=91.77 E-value=3.3 Score=31.92 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~gi 116 (198)
.+.++.++.+++.|+|.+.+..+.-.... .....+..+.+.+.+++|+++- |.--+++.+.++.+.. ..++
T Consensus 30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~~--~~~~~~~i~~i~~~~~ipvi~~------ggI~~~~~~~~~~~~G-ad~V 100 (253)
T 1thf_D 30 GDPVELGKFYSEIGIDELVFLDITASVEK--RKTMLELVEKVAEQIDIPFTVG------GGIHDFETASELILRG-ADKV 100 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSSH--HHHHHHHHHHHHTTCCSCEEEE------SSCCSHHHHHHHHHTT-CSEE
T ss_pred cCHHHHHHHHHHcCCCEEEEECCchhhcC--CcccHHHHHHHHHhCCCCEEEe------CCCCCHHHHHHHHHcC-CCEE
Confidence 46788999999999999988865422222 4445667788998889999983 2334677888777642 3333
Q ss_pred eeC-----CHHHHHHHHh
Q psy9711 117 KDT-----DNIKLANMAN 129 (198)
Q Consensus 117 K~s-----d~~~~~~~~~ 129 (198)
=.. ++..+.++.+
T Consensus 101 ~lg~~~l~~p~~~~~~~~ 118 (253)
T 1thf_D 101 SINTAAVENPSLITQIAQ 118 (253)
T ss_dssp EESHHHHHCTHHHHHHHH
T ss_pred EEChHHHhChHHHHHHHH
Confidence 332 5555666553
No 187
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=91.76 E-value=2.7 Score=32.49 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc-cC--CCCE--
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD-NS--PIPV-- 86 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~-~~--~~pi-- 86 (198)
..++++.+.+..++||+++-+-.+.++ ++.+.++|||++++....+.. ++.+.+..+.... .. .+.+
T Consensus 62 ~~~~i~~i~~~~~ipvi~~ggI~~~~~----~~~~~~~Gad~V~lg~~~l~~----p~~~~~~~~~~g~~~i~~~~~~~~ 133 (253)
T 1thf_D 62 MLELVEKVAEQIDIPFTVGGGIHDFET----ASELILRGADKVSINTAAVEN----PSLITQIAQTFGSQAVVVAIDAKR 133 (253)
T ss_dssp HHHHHHHHHTTCCSCEEEESSCCSHHH----HHHHHHTTCSEEEESHHHHHC----THHHHHHHHHHCGGGEEEEEEEEE
T ss_pred cHHHHHHHHHhCCCCEEEeCCCCCHHH----HHHHHHcCCCEEEEChHHHhC----hHHHHHHHHHcCCCcEEEEEEEEc
Confidence 345556666555899999766655543 555667899999987554432 3334344333321 11 1111
Q ss_pred -----EEEeCCCCcccccCH-HHHHHHHcC-CC-EEEE--eeC------CHHHHHHHHhhcCCCCeEEEecCh--hhHHH
Q psy9711 87 -----IIYNNTFVTNIDISV-DTLVKLAHH-EN-IRGV--KDT------DNIKLANMANQTKDLNFSVFAGSA--GYLLS 148 (198)
Q Consensus 87 -----~lYn~P~~tg~~l~~-~~l~~L~~~-p~-i~gi--K~s------d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~ 148 (198)
.++-.-.......++ +.+.++.+. .. |... +-. |+..+.++. +..+-.+..-.|-. +.+..
T Consensus 134 ~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~-~~~~ipvia~GGI~~~~d~~~ 212 (253)
T 1thf_D 134 VDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR-PLTTLPIIASGGAGKMEHFLE 212 (253)
T ss_dssp ETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHG-GGCCSCEEEESCCCSHHHHHH
T ss_pred cCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHH-HhcCCCEEEECCCCCHHHHHH
Confidence 111110000011233 455666554 23 3332 211 566666665 33322333333333 35566
Q ss_pred HhhcCCCeEEeccccc
Q psy9711 149 GLLVGCAGGINALSAV 164 (198)
Q Consensus 149 ~l~~G~~G~is~~~n~ 164 (198)
.+..|++|++.+.+-+
T Consensus 213 ~~~~Gadgv~vGsal~ 228 (253)
T 1thf_D 213 AFLAGADAALAASVFH 228 (253)
T ss_dssp HHHTTCSEEEESHHHH
T ss_pred HHHcCChHHHHHHHHH
Confidence 6789999999887644
No 188
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=91.76 E-value=0.19 Score=39.52 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=44.9
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE--Ee-CCCCcc
Q psy9711 31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII--YN-NTFVTN 96 (198)
Q Consensus 31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l--Yn-~P~~tg 96 (198)
.+.++.+.+.+.++.+.+.|+|++.+.- ....+.+.+.+..+++-+ +++|+++ |+ +|-..|
T Consensus 14 ~gDP~~~~t~~~~~~l~~~GaD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G 77 (240)
T 1viz_A 14 KLDPNKDLPDEQLEILCESGTDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPG 77 (240)
T ss_dssp EECTTSCCCHHHHHHHHTSCCSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSC
T ss_pred eeCCCccccHHHHHHHHHcCCCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccccCC
Confidence 4455566667778889999999999986 122358889999999987 8999996 65 655444
No 189
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=91.73 E-value=2.2 Score=33.73 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=59.6
Q ss_pred EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHccCCCCEEE--E
Q psy9711 28 IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADNSPIPVII--Y 89 (198)
Q Consensus 28 i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~~~~pi~l--Y 89 (198)
++-.|.++.+.+++.++...+.|||.+=+.-||-.+.. .+-+.+++..+++-. .+|+++ |
T Consensus 19 yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~--~~Pivlm~Y 96 (252)
T 3tha_A 19 YTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKT--KKALVFMVY 96 (252)
T ss_dssp EEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCC--SSEEEEECC
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhc--CCCEEEEec
Confidence 44579999999999999999999999999999855422 112334444444432 378877 7
Q ss_pred eCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 90 NNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
-||-. ....+-+.+-++--.+.|+--.
T Consensus 97 ~N~i~---~~G~e~F~~~~~~aGvdG~Iip 123 (252)
T 3tha_A 97 YNLIF---SYGLEKFVKKAKSLGICALIVP 123 (252)
T ss_dssp HHHHH---HHCHHHHHHHHHHTTEEEEECT
T ss_pred cCHHH---HhhHHHHHHHHHHcCCCEEEeC
Confidence 77752 2345666666655677787776
No 190
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=91.61 E-value=2.4 Score=31.97 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccC------HHHHHHHHcCCCE
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDIS------VDTLVKLAHHENI 113 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~------~~~l~~L~~~p~i 113 (198)
.+.++.+.++|||.+-+.+=. ..+.++.+++. . .+.+ +|..+...+. .+.+.+++..|.+
T Consensus 68 ~~~v~~~~~~Gad~vtvh~~~-------g~~~i~~~~~~---~--gv~v--l~~t~~~~~~~~~~~~v~~~~~~a~~~G~ 133 (208)
T 2czd_A 68 RLIARKVFGAGADYVIVHTFV-------GRDSVMAVKEL---G--EIIM--VVEMSHPGALEFINPLTDRFIEVANEIEP 133 (208)
T ss_dssp HHHHHHHHHTTCSEEEEESTT-------CHHHHHHHHTT---S--EEEE--ECCCCSGGGGTTTGGGHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCEEEEeccC-------CHHHHHHHHHh---C--CcEE--EEecCCcchhhHHHHHHHHHHHHHHHhCC
Confidence 456777889999998886421 22334444332 2 2222 3332211111 2334455557899
Q ss_pred EEEeeC--CHHHHHHHHhhcCCCCeEEEec-Chh---hHHHHhhcCCCeEEeccc
Q psy9711 114 RGVKDT--DNIKLANMANQTKDLNFSVFAG-SAG---YLLSGLLVGCAGGINALS 162 (198)
Q Consensus 114 ~giK~s--d~~~~~~~~~~~~~~~~~v~~G-~d~---~~~~~l~~G~~G~is~~~ 162 (198)
.|+|.+ .+.++.++. +..+.++.+..| ... ....++..|+++++.|.+
T Consensus 134 ~G~~~~~~~~~~i~~lr-~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~ 187 (208)
T 2czd_A 134 FGVIAPGTRPERIGYIR-DRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRA 187 (208)
T ss_dssp SEEECCCSSTHHHHHHH-HHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEECHH
T ss_pred cEEEECCCChHHHHHHH-HhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEChH
Confidence 999998 566666655 344555555554 321 456778899999998754
No 191
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=91.60 E-value=2.3 Score=34.96 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhc---CCeEEE-----eC--CCC-c-------HHHHHHHHHHH--HhcCCCEEEEcCCCCc-------C
Q psy9711 11 EKLKIISTLRQET---KKTIIA-----GT--YCE-S-------TRATIDLTQKA--AKAGANAALILCPYYF-------Q 63 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~-----gv--~~~-~-------~~~~i~~a~~a--~~~Gad~v~~~~P~y~-------~ 63 (198)
++.+.++.+.+++ ++|+++ +- +.. + .+-...-+|.+ .+.|+|-+=+--|.=. .
T Consensus 144 ~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~ 223 (332)
T 3iv3_A 144 QKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAE 223 (332)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCS
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhccccc
Confidence 5677888888887 999877 22 122 2 23356777777 5779998888766411 0
Q ss_pred --CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH----cCC-CEEEEeeC
Q psy9711 64 --KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA----HHE-NIRGVKDT 119 (198)
Q Consensus 64 --~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~----~~p-~i~giK~s 119 (198)
.-+|+++..++|+++.+++++|+++=- .|. +.+.+.+.. +.. .+.|+=..
T Consensus 224 ~~~~y~~~ea~~~f~~~~~a~~~P~v~ls----gG~--~~~~fl~~v~~A~~aGa~f~Gv~~G 280 (332)
T 3iv3_A 224 GEVVYSKEEAAQAFREQEASTDLPYIYLS----AGV--SAELFQETLVFAHKAGAKFNGVLCG 280 (332)
T ss_dssp SCCCBCHHHHHHHHHHHHHTCSSCEEEEC----TTC--CHHHHHHHHHHHHHHTCCCCEEEEC
T ss_pred ccccccHHHHHHHHHHHHhcCCCCEEEEC----CCC--CHHHHHHHHHHHHHcCCCcceEEee
Confidence 112489999999999999999987522 232 455554443 122 44566555
No 192
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=91.56 E-value=0.69 Score=37.18 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=73.7
Q ss_pred HHHHHHHhc-CCeEEEeCCCCcH-HHHHHHHHHHHhcCCCEEEEcCCCCcCC-----------CCCHHHHHHHHHHHHcc
Q psy9711 15 IISTLRQET-KKTIIAGTYCEST-RATIDLTQKAAKAGANAALILCPYYFQK-----------KMTEDLIYEHFISVADN 81 (198)
Q Consensus 15 l~~~~~~~~-~~pvi~gv~~~~~-~~~i~~a~~a~~~Gad~v~~~~P~y~~~-----------~~~~~~i~~y~~~i~~~ 81 (198)
+.+.++-.+ ++||++|+...+. ...=...+..+++|+.++ +-.|....- .++-++..+..+. |..
T Consensus 84 ~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~-A~~ 161 (286)
T 2p10_A 84 MAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAE-AHK 161 (286)
T ss_dssp HHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHH-HHH
T ss_pred HHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHH-HHH
Confidence 333333444 8999999866553 344444588889999999 666622111 1224444444433 233
Q ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHc-CC------------CEEEEeeC----C-HHHHHHHHh--hcCCCCeEEEec
Q psy9711 82 SPIPVIIYNNTFVTNIDISVDTLVKLAH-HE------------NIRGVKDT----D-NIKLANMAN--QTKDLNFSVFAG 141 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~p------------~i~giK~s----d-~~~~~~~~~--~~~~~~~~v~~G 141 (198)
.++--+.| ..+++.-+.+++ -| ..+|.+.+ + ++.++++.+ +..+|++.|+++
T Consensus 162 ~gL~Ti~~--------v~~~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~ 233 (286)
T 2p10_A 162 LDLLTTPY--------VFSPEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSH 233 (286)
T ss_dssp TTCEECCE--------ECSHHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEE
T ss_pred CCCeEEEe--------cCCHHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEec
Confidence 45444433 345666666653 23 35555554 3 334444332 235688888876
Q ss_pred C-----hhhHHHHhhc--CCCeEEeccc
Q psy9711 142 S-----AGYLLSGLLV--GCAGGINALS 162 (198)
Q Consensus 142 ~-----d~~~~~~l~~--G~~G~is~~~ 162 (198)
- .+.....+.. |++|++.+.+
T Consensus 234 gGpIstpeDv~~~l~~t~G~~G~~gASs 261 (286)
T 2p10_A 234 GGPIANPEDARFILDSCQGCHGFYGASS 261 (286)
T ss_dssp STTCCSHHHHHHHHHHCTTCCEEEESHH
T ss_pred CCCCCCHHHHHHHHhcCCCccEEEeehh
Confidence 5 2234455666 9999998766
No 193
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Probab=91.53 E-value=3 Score=34.00 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 9 EEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.++-.+.++.+.+.. ++++.+-+ ++-+.++++++++..++.|++...+--|. .+. + .+.++.+.+++++||
T Consensus 166 ~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE~P~--~~~--~---~~~~~~l~~~~~ipi 238 (345)
T 2zad_A 166 LKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPV--RRE--D---IEGLKFVRFHSPFPV 238 (345)
T ss_dssp HHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEECCS--CTT--C---HHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeeeCCC--Ccc--c---HHHHHHHHHhCCCCE
Confidence 444455666666665 67776644 34467888888888888877722344553 111 1 355666777778888
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+.=. .-.+++.+.++.+ .-+++-+|-+
T Consensus 239 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~ 267 (345)
T 2zad_A 239 AADE------SARTKFDVMRLVKEEAVDYVNIKLM 267 (345)
T ss_dssp EEST------TCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred EEeC------CcCCHHHHHHHHHhCCCCEEEEecc
Confidence 7632 2336777777763 4577888766
No 194
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=91.52 E-value=1.2 Score=37.50 Aligned_cols=117 Identities=9% Similarity=0.007 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.++++. ++++++-+ ++-+.++++++++..++.|++.+ --|. .+. + .+.++.|.+++++||
T Consensus 162 ~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~--~~~--d---~~~~~~l~~~~~iPI 232 (405)
T 3rr1_A 162 DAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFI--EEPV--LAE--Q---AETYARLAAHTHLPI 232 (405)
T ss_dssp HHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCE--ECSS--CCS--S---THHHHHHHTTCSSCE
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--c---HHHHHHHHhcCCCCE
Confidence 44467788888877 78888755 45678999999999999987754 3443 111 1 356788888999999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.=. .-.++..+.++.+ .-.++-+|-+ -+....++......-++.+..+
T Consensus 233 a~dE------~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~~~gi~v~~h 286 (405)
T 3rr1_A 233 AAGE------RMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAEAYDVALAPH 286 (405)
T ss_dssp EECT------TCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHHTTTCEECCB
T ss_pred EecC------CcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHHHcCCEEEeC
Confidence 8732 3457788888874 4689999988 3443333332111234555544
No 195
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=91.51 E-value=2.4 Score=32.80 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCCCeEEEecCh---h-hHHHHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711 122 IKLANMANQTKDLNFSVFAGSA---G-YLLSGLLVGCAGGINALSAVLGGPICELYDLA 176 (198)
Q Consensus 122 ~~~~~~~~~~~~~~~~v~~G~d---~-~~~~~l~~G~~G~is~~~n~~P~~~~~l~~~~ 176 (198)
....++++. ..++..++.|.. . ...-....|.||+.-|.+.+-++-+.++.+.+
T Consensus 164 ~~~~~~ir~-~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~~l 221 (225)
T 1hg3_A 164 TNTVELVKK-VNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDL 221 (225)
T ss_dssp HHHHHHHHH-HCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHHHH
Confidence 344444533 235566665543 1 22233467999999998877665555555443
No 196
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=91.50 E-value=1.9 Score=37.09 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 115 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g 115 (198)
....+.++.+.++|+|++.+..- ... .+...+..+.+.+.. ++|++ .|...+.+...++.+.. +.+
T Consensus 232 ~~~~~~a~~l~~~G~d~ivi~~a---~g~--~~~~~~~i~~l~~~~p~~pvi-------~G~v~t~~~a~~~~~~G-ad~ 298 (491)
T 1zfj_A 232 SDTFERAEALFEAGADAIVIDTA---HGH--SAGVLRKIAEIRAHFPNRTLI-------AGNIATAEGARALYDAG-VDV 298 (491)
T ss_dssp TTHHHHHHHHHHHTCSEEEECCS---CTT--CHHHHHHHHHHHHHCSSSCEE-------EEEECSHHHHHHHHHTT-CSE
T ss_pred hhHHHHHHHHHHcCCCeEEEeee---cCc--chhHHHHHHHHHHHCCCCcEe-------CCCccCHHHHHHHHHcC-CCE
Confidence 44577888889999999998752 112 456778888888888 79998 34445677777777532 222
Q ss_pred EeeC------------------CHHHHHHHHhhcCCCCeEEEe-c---ChhhHHHHhhcCCCeEEeccccc
Q psy9711 116 VKDT------------------DNIKLANMANQTKDLNFSVFA-G---SAGYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 116 iK~s------------------d~~~~~~~~~~~~~~~~~v~~-G---~d~~~~~~l~~G~~G~is~~~n~ 164 (198)
++.+ +...+.++.......++.|+. | ....+..++.+|+++++.|.+..
T Consensus 299 I~vg~g~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~ 369 (491)
T 1zfj_A 299 VKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFA 369 (491)
T ss_dssp EEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred EEECccCCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhh
Confidence 2211 223333333111112455554 2 23457788899999999887754
No 197
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=91.48 E-value=0.99 Score=37.26 Aligned_cols=102 Identities=7% Similarity=0.080 Sum_probs=62.6
Q ss_pred CHHHHHH----HHHHHHHhc--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHHH
Q psy9711 8 TEEEKLK----IISTLRQET--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILCPYYFQKK--MTEDLIY 72 (198)
Q Consensus 8 t~~Er~~----l~~~~~~~~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i~ 72 (198)
|.+.|.+ +++.+++++ +.||.+=++ +.+.++++++++.++++ +|.+-+....+.... ..+..-.
T Consensus 188 slenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~ 266 (343)
T 3kru_A 188 SIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQV 266 (343)
T ss_dssp SHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTH
T ss_pred chHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceee
Confidence 4556654 455555555 568877443 34589999999999999 999999644332110 0011224
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEE
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGV 116 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~gi 116 (198)
++.+.|.+.+++||+. .|.--+++...++.+.. .++++
T Consensus 267 ~~~~~ir~~~~iPVi~------~Ggi~t~e~Ae~~l~~G~aD~V~i 306 (343)
T 3kru_A 267 KYAETIKKRCNIKTSA------VGLITTQELAEEILSNERADLVAL 306 (343)
T ss_dssp HHHHHHHHHHTCEEEE------ESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred hHHHHHHHhcCcccce------eeeeeHHHHHHHHHhchhhHHHHH
Confidence 5556666677888876 34334678777776433 34444
No 198
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}
Probab=91.46 E-value=1.2 Score=37.31 Aligned_cols=104 Identities=9% Similarity=-0.005 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCC--cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc-cCC
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCE--STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD-NSP 83 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~--~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~-~~~ 83 (198)
++-.+.++.+++++ ++++.+-+ ++. +.++++++++..++.|++.+ --|. .+. + .+.++.|.+ +++
T Consensus 177 ~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~~ 247 (401)
T 2hzg_A 177 AADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWL--EEPF--DAG--A---LAAHAALAGRGAR 247 (401)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEE--ECCS--CTT--C---HHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Ccc--C---HHHHHHHHhhCCC
Confidence 44567788888877 78888865 445 78999999999999998853 4554 121 2 466778888 889
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHH
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~ 128 (198)
+||+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++.
T Consensus 248 iPI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~ 291 (401)
T 2hzg_A 248 VRIAGGE------AAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVA 291 (401)
T ss_dssp SEEEECT------TCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHH
T ss_pred CCEEecC------CcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHH
Confidence 9998733 3356788888883 5789999988 555444443
No 199
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=91.45 E-value=2.4 Score=35.15 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=44.4
Q ss_pred CeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEc------CCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 25 KTIIAGTYCE-STRATIDLTQKAAKAGANAALIL------CPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 25 ~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~------~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
.-||+|.+.. +.+.+++.++.++++|++++-.. .|+-|+.- .++-++.++++++..++|++-
T Consensus 107 ~~vIAgpcs~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~gl--g~egl~~l~~~~~e~Gl~~~t 175 (350)
T 1vr6_A 107 FTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGL--GEKGLEYLREAADKYGMYVVT 175 (350)
T ss_dssp EEEEEECSBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCC--THHHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEeCCCcCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCC--CHHHHHHHHHHHHHcCCcEEE
Confidence 4478886554 67889999999999999986443 23222221 255667888889999999985
No 200
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=91.43 E-value=0.43 Score=38.62 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=58.7
Q ss_pred CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEE--EcCCCCcC-CC-----C---CHHHHHHHHHHHHccCCCCEEE---
Q psy9711 24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAAL--ILCPYYFQ-KK-----M---TEDLIYEHFISVADNSPIPVII--- 88 (198)
Q Consensus 24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~--~~~P~y~~-~~-----~---~~~~i~~y~~~i~~~~~~pi~l--- 88 (198)
++-||+|..+ .+.+.+++.++.++++|++.+. +.-.+|.+ |. . .-++-.+.++++++..++|++-
T Consensus 18 ~~~vIAGpc~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l~~~~~~~Glp~~te~~ 97 (292)
T 1o60_A 18 PFVLFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVKIITDVH 97 (292)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEECC
T ss_pred ceEEEEecCCccCHHHHHHHHHHHHHHhhhhCEeEEEhhhcccCCCCChHHhhhhhHHHHHHHHHHHHHHcCCcEEEecC
Confidence 4568888643 3678889999999887754321 11222332 11 0 1245566778888888888875
Q ss_pred --------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 --------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 --------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
|-+|+ +..-..++++++++...-+++|-.
T Consensus 98 d~~~~~~l~~~vd~~kIgA--~~~~n~~Ll~~~a~~~kPV~lk~G 140 (292)
T 1o60_A 98 EIYQCQPVADVVDIIQLPA--FLARQTDLVEAMAKTGAVINVKKP 140 (292)
T ss_dssp SGGGHHHHHTTCSEEEECG--GGTTCHHHHHHHHHTTCEEEEECC
T ss_pred CHHHHHHHHhcCCEEEECc--ccccCHHHHHHHHcCCCcEEEeCC
Confidence 22232 112345688888888888888887
No 201
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=91.43 E-value=0.69 Score=36.70 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=49.5
Q ss_pred HHHHHHHHhc-CCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 14 KIISTLRQET-KKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
+.++.+++.+ .+||++ |+...+.+++++.++.+.++|++++.+..-.|..++ +....+-++.+.+
T Consensus 185 e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~d--p~~~~~~l~~~v~ 252 (263)
T 1w8s_A 185 KTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRD--ALKFARALAELVY 252 (263)
T ss_dssp HHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTT--HHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcC--HHHHHHHHHHHHh
Confidence 3345555555 448766 344337999999999999999999999988888776 8888888877764
No 202
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=91.39 E-value=2.1 Score=35.49 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+= -|.- +++ .+.++.|.+++++|
T Consensus 167 ~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE--qP~~------~~~-~~~~~~l~~~~~iP 237 (368)
T 3q45_A 167 KELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCE--EPVS------RNL-YTALPKIRQACRIP 237 (368)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEE--CCBC------GGG-GGGHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEE--CCCC------hhH-HHHHHHHHhhCCCC
Confidence 456677888888877 78888754 556789999999999998876543 3431 222 35577888889999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
|+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++
T Consensus 238 Ia~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i 278 (368)
T 3q45_A 238 IMADE------SCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNI 278 (368)
T ss_dssp EEEST------TCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHH
T ss_pred EEEcC------CcCCHHHHHHHHHcCCCCeEEechhhcCCHHHHHHH
Confidence 98732 2356888888884 4689999988 45444443
No 203
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=91.27 E-value=2.8 Score=34.50 Aligned_cols=107 Identities=11% Similarity=0.157 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++.+=+ ++-+.++++++++..++.+.+-.++--|. .+. + .+.++.+.+++++
T Consensus 167 ~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iEqP~--~~~--d---~~~~~~l~~~~~i 239 (366)
T 1tkk_A 167 DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPV--HKD--D---LAGLKKVTDATDT 239 (366)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEECCS--CTT--C---HHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEECCC--Ccc--c---HHHHHHHHhhCCC
Confidence 3455567777777776 67887755 44578899999999888333334555664 222 2 3556777777889
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
||+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 240 pIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 281 (366)
T 1tkk_A 240 PIMADE------SVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKI 281 (366)
T ss_dssp CEEECT------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred CEEEcC------CCCCHHHHHHHHHhCCCCEEEeehhhhcCHHHHHHH
Confidence 988733 2356778888873 5688999987 45444333
No 204
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=91.04 E-value=1.2 Score=35.43 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCeEEE--eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCC----------------CCHHHHHHHHHHHHcc-CCC
Q psy9711 24 KKTIIA--GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKK----------------MTEDLIYEHFISVADN-SPI 84 (198)
Q Consensus 24 ~~pvi~--gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~----------------~~~~~i~~y~~~i~~~-~~~ 84 (198)
|..++. -.|.++.+.+++.++..++.|||.+-+.-|+-.+.- .+-+.+.+..+++-+. +++
T Consensus 17 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~ 96 (267)
T 3vnd_A 17 KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDM 96 (267)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 544433 468899999999999999999999999988743321 1123445666666655 788
Q ss_pred CEEE--EeCC
Q psy9711 85 PVII--YNNT 92 (198)
Q Consensus 85 pi~l--Yn~P 92 (198)
|+++ |-+|
T Consensus 97 Pivlm~Y~np 106 (267)
T 3vnd_A 97 PIGLLLYANL 106 (267)
T ss_dssp CEEEEECHHH
T ss_pred CEEEEecCcH
Confidence 9877 6555
No 205
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=91.01 E-value=3.8 Score=30.55 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--
Q psy9711 42 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-- 119 (198)
Q Consensus 42 ~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-- 119 (198)
.++.+.+.|+|.+ + .|.+ +.++.++- ...++|++. |. .+++.+.+..+. .+..+|..
T Consensus 75 ~~~~a~~~Gad~i-v-~~~~------~~~~~~~~----~~~g~~vi~-------g~-~t~~e~~~a~~~-Gad~vk~~~~ 133 (205)
T 1wa3_A 75 QCRKAVESGAEFI-V-SPHL------DEEISQFC----KEKGVFYMP-------GV-MTPTELVKAMKL-GHTILKLFPG 133 (205)
T ss_dssp HHHHHHHHTCSEE-E-CSSC------CHHHHHHH----HHHTCEEEC-------EE-CSHHHHHHHHHT-TCCEEEETTH
T ss_pred HHHHHHHcCCCEE-E-cCCC------CHHHHHHH----HHcCCcEEC-------Cc-CCHHHHHHHHHc-CCCEEEEcCc
Confidence 4677788999999 4 4543 23444443 446888874 21 245545544433 34455643
Q ss_pred ---CHHHHHHHHhhcCCCCeEEE--ecCh-hhHHHHhhcCCCeEEeccc
Q psy9711 120 ---DNIKLANMANQTKDLNFSVF--AGSA-GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 120 ---d~~~~~~~~~~~~~~~~~v~--~G~d-~~~~~~l~~G~~G~is~~~ 162 (198)
.+..+.++. ... +++.++ .|-. ..+...+..|++|+..|.+
T Consensus 134 ~~~g~~~~~~l~-~~~-~~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~ 180 (205)
T 1wa3_A 134 EVVGPQFVKAMK-GPF-PNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSA 180 (205)
T ss_dssp HHHHHHHHHHHH-TTC-TTCEEEEBSSCCTTTHHHHHHHTCSCEEECHH
T ss_pred cccCHHHHHHHH-HhC-CCCcEEEcCCCCHHHHHHHHHCCCCEEEECcc
Confidence 234444444 222 244444 3433 4566778899999998865
No 206
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=91.00 E-value=3.7 Score=33.83 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
.++-.+.++.++++. ++++.+=+ ++.+.++++++++.. ++.|+ .+--|.. + .+.++.+.+++++
T Consensus 173 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i---~iE~P~~---~------~~~~~~l~~~~~i 240 (371)
T 2ps2_A 173 PVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF---ALEAPCA---T------WRECISLRRKTDI 240 (371)
T ss_dssp HHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC---EEECCBS---S------HHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC---cCcCCcC---C------HHHHHHHHhhCCC
Confidence 455567777777766 67887755 445788999999998 88876 4455542 2 3567888888899
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
||+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 241 PI~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 282 (371)
T 2ps2_A 241 PIIYDE------LATNEMSIVKILADDAAEGIDLKISKAGGLTRGRRQ 282 (371)
T ss_dssp CEEEST------TCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHHHH
T ss_pred CEEeCC------CcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHHH
Confidence 988733 3356788888863 4689999988 55544443
No 207
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=90.92 E-value=1.7 Score=35.80 Aligned_cols=117 Identities=9% Similarity=0.141 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++ .+--|.- +. + .+.++.|.+++++||
T Consensus 167 ~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~--~iEqP~~--~~--d---~~~~~~l~~~~~iPI 237 (354)
T 3jva_A 167 EADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIE--LVEQPVK--RR--D---LEGLKYVTSQVNTTI 237 (354)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEE--EEECCSC--TT--C---HHHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCCC--hh--h---HHHHHHHHHhCCCCE
Confidence 45566778887776 78888754 455788899999988887644 3445541 21 1 355678888889999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.=. .-.+++.+.++.+ ...++-+|-+ .+....++......-++.+..|
T Consensus 238 a~dE------~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~ 291 (354)
T 3jva_A 238 MADE------SCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIG 291 (354)
T ss_dssp EEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEcC------CcCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCeEEec
Confidence 8732 2456778888873 5689999987 4544444432111234555443
No 208
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=90.91 E-value=2.7 Score=34.83 Aligned_cols=108 Identities=13% Similarity=0.023 Sum_probs=67.5
Q ss_pred CeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEc--------CCCC--cCCC-------------CCHHHHHHHHHHH
Q psy9711 25 KTIIAGTYC---ESTRATIDLTQKAAKAGANAALIL--------CPYY--FQKK-------------MTEDLIYEHFISV 78 (198)
Q Consensus 25 ~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~--------~P~y--~~~~-------------~~~~~i~~y~~~i 78 (198)
.-||+++|. .|.+.+.++++.|+++|||++=.. .|+. +... ....+-.....+.
T Consensus 20 ~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~ 99 (349)
T 2wqp_A 20 PLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEY 99 (349)
T ss_dssp CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHH
Confidence 558887763 478999999999999999999876 6654 3310 0134555667777
Q ss_pred HccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHHhhcCCCCeEEEecCh
Q psy9711 79 ADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVFAGSA 143 (198)
Q Consensus 79 ~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~~~~~~~~~~v~~G~d 143 (198)
|+..+++++-= .++.+.+..|.++ ++-.+|-. |...+..+- ..+..+-+-+|..
T Consensus 100 ~~~~Gi~~~st--------~~d~~svd~l~~~-~v~~~KI~S~~~~n~~LL~~va--~~gkPviLstGma 158 (349)
T 2wqp_A 100 VESKGMIFIST--------LFSRAAALRLQRM-DIPAYKIGSGECNNYPLIKLVA--SFGKPIILSTGMN 158 (349)
T ss_dssp HHHTTCEEEEE--------ECSHHHHHHHHHH-TCSCEEECGGGTTCHHHHHHHH--TTCSCEEEECTTC
T ss_pred HHHhCCeEEEe--------eCCHHHHHHHHhc-CCCEEEECcccccCHHHHHHHH--hcCCeEEEECCCC
Confidence 88888888741 2344455444432 34556665 444444443 2345565666654
No 209
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=90.90 E-value=2.5 Score=32.71 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..++......+.++..+..+.+.+.++|++++.+.. .+.....++.+. ..++|+++
T Consensus 20 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~-------~~~~~~~~~~~~-~~~iPvV~ 91 (291)
T 3l49_A 20 DLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGN-------LDVLNPWLQKIN-DAGIPLFT 91 (291)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSC-------HHHHHHHHHHHH-HTTCCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhhhHHHHHHHH-HCCCcEEE
Confidence 345555555555 7777776666677888888999999999999987542 334445555554 45999999
Q ss_pred EeCCC
Q psy9711 89 YNNTF 93 (198)
Q Consensus 89 Yn~P~ 93 (198)
+|.+.
T Consensus 92 ~~~~~ 96 (291)
T 3l49_A 92 VDTAT 96 (291)
T ss_dssp ESCCC
T ss_pred ecCCC
Confidence 98754
No 210
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=90.88 E-value=0.21 Score=40.67 Aligned_cols=111 Identities=9% Similarity=0.032 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHccCCCC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~~~~p 85 (198)
..+.-.++++.+.+.+++||.+-+.. .+..+..+.++.+++.|+|++.+..-.... .+ ...-.++.+.+.+ ++|
T Consensus 110 ~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~--~~~~~~~i~~i~~--~ip 185 (318)
T 1vhn_A 110 DLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFT--GRAEWKALSVLEK--RIP 185 (318)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTS--SCCCGGGGGGSCC--SSC
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCccccCC--CCcCHHHHHHHHc--CCe
Confidence 44555667777776667888875421 233445599999999999999997432111 01 1011244555555 788
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcC--CCEEEEeeC---CHHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHH--ENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~--p~i~giK~s---d~~~~~~~~ 128 (198)
|+. .|--.+++...++.+. -..|++=-. |+..+.++.
T Consensus 186 Vi~------~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~ 227 (318)
T 1vhn_A 186 TFV------SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIK 227 (318)
T ss_dssp EEE------ESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHH
T ss_pred EEE------ECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHH
Confidence 775 3434578888777752 233433332 555554443
No 211
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=90.87 E-value=2.4 Score=32.65 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CCEEEEeCCCCcccccCHHHHHHHHc-
Q psy9711 34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IPVIIYNNTFVTNIDISVDTLVKLAH- 109 (198)
Q Consensus 34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~pi~lYn~P~~tg~~l~~~~l~~L~~- 109 (198)
.+++.-+.-++.|.+.|||.+-+..++-...+.+.+.+.+-.+++.++++ +|+++ . ++ .++++.+.+.++
T Consensus 68 ~~~~~k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIl-e----t~-~l~~e~i~~a~~i 141 (220)
T 1ub3_A 68 QEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVIL-E----TG-YFSPEEIARLAEA 141 (220)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEEC-C----GG-GSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEE-e----cC-CCCHHHHHHHHHH
Confidence 56777788899999999999999877643211248889999999998874 45554 2 32 257777665554
Q ss_pred --CCCEEEEeeC--------CHHHHHHHHhhcCCCCeE--EEecCh--hhHHHHhhcCCC--eEEec
Q psy9711 110 --HENIRGVKDT--------DNIKLANMANQTKDLNFS--VFAGSA--GYLLSGLLVGCA--GGINA 160 (198)
Q Consensus 110 --~p~i~giK~s--------d~~~~~~~~~~~~~~~~~--v~~G~d--~~~~~~l~~G~~--G~is~ 160 (198)
--..-.||-| +++.+..+. +..+.++. +-.|.- ...+..+.+|++ |.-++
T Consensus 142 a~eaGADfVKTsTGf~~~gat~~dv~~m~-~~vg~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g 207 (220)
T 1ub3_A 142 AIRGGADFLKTSTGFGPRGASLEDVALLV-RVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSG 207 (220)
T ss_dssp HHHHTCSEEECCCSSSSCCCCHHHHHHHH-HHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred HHHhCCCEEEeCCCCCCCCCCHHHHHHHH-HhhCCCCeEEEECCCCCHHHHHHHHHCCCcccchhHH
Confidence 3467778887 223444443 22244444 444433 245666789998 76544
No 212
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Probab=90.68 E-value=1.1 Score=37.92 Aligned_cols=117 Identities=8% Similarity=-0.015 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+= -|.- +. + .+.++.|.+++++||
T Consensus 210 ~~d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~~--~~--d---~~~~~~l~~~~~iPI 280 (424)
T 3v3w_A 210 NYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWME--DAVP--AE--N---QESFKLIRQHTTTPL 280 (424)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE--CCSC--CS--S---TTHHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE--CCCC--hH--h---HHHHHHHHhhCCCCE
Confidence 44567788888887 88998855 456789999999999999987553 4431 11 1 245788888899999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++......-++.+..+
T Consensus 281 a~dE------~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h 334 (424)
T 3v3w_A 281 AVGE------VFNSIHDCRELIQNQWIDYIRTTIVHAGGISQMRRIADFASLFHVRTGFH 334 (424)
T ss_dssp EECT------TCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHHTTTCEEEEC
T ss_pred EEcc------CcCCHHHHHHHHHcCCCCeEeecchhcCCHHHHHHHHHHHHHcCCEEEec
Confidence 8733 2345677888874 4689999988 3444433332111234555443
No 213
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=90.67 E-value=1.7 Score=33.74 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+..=..++++-+.+++ +..++......+.....+..+.+.+.++|++++.+... +.+...++.+. ..++
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~-------~~~~~~~~~~~-~~~i 90 (293)
T 3l6u_A 19 KHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDD-------VYIGSAIEEAK-KAGI 90 (293)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT-------TTTHHHHHHHH-HTTC
T ss_pred CcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh-------HHHHHHHHHHH-HcCC
Confidence 3334455566555555 77777777777888888899999999999999986532 11223344443 4589
Q ss_pred CEEEEeCCC
Q psy9711 85 PVIIYNNTF 93 (198)
Q Consensus 85 pi~lYn~P~ 93 (198)
|++++|.+.
T Consensus 91 PvV~~~~~~ 99 (293)
T 3l6u_A 91 PVFAIDRMI 99 (293)
T ss_dssp CEEEESSCC
T ss_pred CEEEecCCC
Confidence 999998753
No 214
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=90.66 E-value=4.1 Score=30.36 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
.++++.+.+.. +.|++++....++.++ .++.+.++|||++.+.+-. . ++.+.+ +.+.+...++++.+--.
T Consensus 41 ~~~i~~l~~~~~~~~i~~~l~~~di~~~--~~~~a~~~Gad~v~vh~~~----~--~~~~~~-~~~~~~~~g~~~gv~~~ 111 (207)
T 3ajx_A 41 LSVITAVKKAHPDKIVFADMKTMDAGEL--EADIAFKAGADLVTVLGSA----D--DSTIAG-AVKAAQAHNKGVVVDLI 111 (207)
T ss_dssp THHHHHHHHHSTTSEEEEEEEECSCHHH--HHHHHHHTTCSEEEEETTS----C--HHHHHH-HHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHHhCCCCeEEEEEEecCccHH--HHHHHHhCCCCEEEEeccC----C--hHHHHH-HHHHHHHcCCceEEEEe
Confidence 34666666666 7899986654453233 4578889999999875321 1 333333 33334444565533110
Q ss_pred CCCccccc-CHHH-HHHHHcC-CCEEEEeeC--------CH--HHHHHHHhhcCCCCeEEEecCh-hhHHHHhhcCCCeE
Q psy9711 92 TFVTNIDI-SVDT-LVKLAHH-ENIRGVKDT--------DN--IKLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGG 157 (198)
Q Consensus 92 P~~tg~~l-~~~~-l~~L~~~-p~i~giK~s--------d~--~~~~~~~~~~~~~~~~v~~G~d-~~~~~~l~~G~~G~ 157 (198)
.. +++. +..+.+. ...+++..+ ++ .++++... . +..+.+-.|-. +.....+..|++++
T Consensus 112 ------s~~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~-~-~~pi~v~GGI~~~~~~~~~~aGad~v 183 (207)
T 3ajx_A 112 ------GIEDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEK-A-RVPFSVAGGVKVATIPAVQKAGAEVA 183 (207)
T ss_dssp ------TCSSHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTHHHHHHHHH-H-TSCEEEESSCCGGGHHHHHHTTCSEE
T ss_pred ------cCCChHHHHHHHHHhCCCEEEEEecccccccCCCchHHHHHHhhC-C-CCCEEEECCcCHHHHHHHHHcCCCEE
Confidence 11 3333 4444432 344444322 22 33333331 1 23455555654 35667789999999
Q ss_pred Eeccc
Q psy9711 158 INALS 162 (198)
Q Consensus 158 is~~~ 162 (198)
+.|.+
T Consensus 184 vvGsa 188 (207)
T 3ajx_A 184 VAGGA 188 (207)
T ss_dssp EESHH
T ss_pred EEeee
Confidence 98865
No 215
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=90.64 E-value=2.4 Score=33.45 Aligned_cols=75 Identities=7% Similarity=0.100 Sum_probs=38.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHc
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~ 80 (198)
|++...++++|.++++.+++.. .+=++=+--...+..-++.+.+.+.|.. ++++.-.|. .|+ .+++.+.|+...+
T Consensus 92 G~~~~~~~~~~~~ll~~~~~~g-~~d~iDvEl~~~~~~~~l~~~~~~~~~k-vI~S~Hdf~~tP~--~~el~~~~~~~~~ 167 (257)
T 2yr1_A 92 GQPIPLNEAEVRRLIEAICRSG-AIDLVDYELAYGERIADVRRMTEECSVW-LVVSRHYFDGTPR--KETLLADMRQAER 167 (257)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHT-CCSEEEEEGGGTTHHHHHHHHHHHTTCE-EEEEEEESSCCCC--HHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCCEEEEECCCChhHHHHHHHHHhCCCE-EEEEecCCCCCcC--HHHHHHHHHHHHh
Confidence 4555889999999999998752 1111111100011223334444455543 333333332 344 6777777777653
No 216
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=90.63 E-value=1.8 Score=36.79 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++++ ++++++-+ +.-+.++++++++..++.|++.+ --|. .+. =.+.++.|.+++++||
T Consensus 187 ~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~i--EeP~--~~~-----~~~~~~~l~~~~~iPI 257 (433)
T 3rcy_A 187 SLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWY--EEPV--PPD-----NVGAMAQVARAVRIPV 257 (433)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEE--ECCS--CTT-----CHHHHHHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEE--ECCC--Chh-----hHHHHHHHHhccCCCE
Confidence 44556778888776 78888855 45678999999999999987754 3443 111 1456788888999999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
+.= ..-.++..+.++.+ .-.++-+|-+ .+....++......-++.+..+
T Consensus 258 a~d------E~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~kia~lA~~~gv~~~~h 311 (433)
T 3rcy_A 258 ATG------ERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKKVAAMAEVYNAQMAPH 311 (433)
T ss_dssp EEC------TTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHHHHHHHHTTTCEECCC
T ss_pred Eec------CCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEec
Confidence 873 33457888888884 4578888877 3444333332111234555544
No 217
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=90.54 E-value=0.58 Score=39.25 Aligned_cols=95 Identities=7% Similarity=-0.050 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++++ ++++.+-+ +..+.++++++++..++.|++ .+--|. .+. -.+.++.|.+++++||
T Consensus 193 ~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~--~iE~P~--~~~-----d~~~~~~l~~~~~iPI 263 (403)
T 2ox4_A 193 KIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIF--FYEEIN--TPL-----NPRLLKEAKKKIDIPL 263 (403)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEE--EEECCS--CTT-----STHHHHHHHHTCCSCE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCC--EEeCCC--Chh-----hHHHHHHHHHhCCCCE
Confidence 34456777777776 78888765 455789999999999998765 344554 111 1456788888889999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+.=. .-.+++.+.++.+ .-+++-+|-+
T Consensus 264 a~dE------~~~~~~~~~~~i~~~~~d~v~ik~~ 292 (403)
T 2ox4_A 264 ASGE------RIYSRWGFLPFLEDRSIDVIQPDLG 292 (403)
T ss_dssp EECT------TCCHHHHHHHHHHTTCCSEECCCHH
T ss_pred EecC------CcCCHHHHHHHHHcCCCCEEecCcc
Confidence 8733 2345788888884 4689999987
No 218
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=90.50 E-value=3.9 Score=31.42 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEeC----CCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 9 EEEKLKIISTLRQETKKTIIAGT----YCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~~~pvi~gv----~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
.++-.+.++.++++++ |+++-+ +..+.++..+.++.++++|+|++-...
T Consensus 101 ~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~tst 153 (225)
T 1mzh_A 101 YDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTST 153 (225)
T ss_dssp HHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred hHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 3444555777776664 444433 445667788999999999999995444
No 219
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=90.50 E-value=6.1 Score=32.84 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++=.+.++.++++. ++++.+-+ ++-+.++++++++..++.|.+-..+--|.- +. + .+.+++|.+++++|
T Consensus 169 ~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iEeP~~--~~--d---~~~~~~l~~~~~iP 241 (379)
T 3r0u_A 169 FNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVK--YY--D---IKAMAEITKFSNIP 241 (379)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEECCSC--TT--C---HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEECCCC--cc--c---HHHHHHHHhcCCCC
Confidence 455566777887777 67887755 556788899999988884444455556641 21 2 35567788888899
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|..=. .-.+...+.++.+ .-.++-+|-+ .+....++......-++.+..|
T Consensus 242 Ia~dE------~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia~~A~~~gi~~~~~ 296 (379)
T 3r0u_A 242 VVADE------SVFDAKDAERVIDEQACNMINIKLAKTGGILEAQKIKKLADSAGISCMVG 296 (379)
T ss_dssp EEEST------TCSSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEeCC------ccCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 88722 2346777788774 4578888887 4544443332111234555544
No 220
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=90.31 E-value=5.2 Score=30.98 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCe---EEEeC------CCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH-
Q psy9711 6 KSTEEEKLKIISTLRQETKKT---IIAGT------YCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE- 68 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~p---vi~gv------~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~- 68 (198)
.++.++..++-+.+.+. ++. +.++. ++.+ .+...+.++.|+++|+..+.+.+......+ .+
T Consensus 43 ~~~~~~~~~~~~~l~~~-gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~-~~~ 120 (287)
T 2x7v_A 43 LPSDEAATKFKREMKKH-GIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGTG-EEE 120 (287)
T ss_dssp CCCHHHHHHHHHHHHHH-TCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTSC-HHH
T ss_pred CCCHHHHHHHHHHHHHc-CCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCC-HHH
Confidence 45677777777776665 444 33332 2111 234456678889999999887655432222 12
Q ss_pred --HHHHHHHHHHHcc-CCCCEEEEeCCCCcccc--cCHHHHHHHHc-C---CCEEEEeeC
Q psy9711 69 --DLIYEHFISVADN-SPIPVIIYNNTFVTNID--ISVDTLVKLAH-H---ENIRGVKDT 119 (198)
Q Consensus 69 --~~i~~y~~~i~~~-~~~pi~lYn~P~~tg~~--l~~~~l~~L~~-~---p~i~giK~s 119 (198)
+.+.+.++.+++. .++.+.+-|.+.. +.. -+++.+.+|.+ + |++--+=|.
T Consensus 121 ~~~~~~~~l~~l~~~~~gv~l~lEn~~~~-~~~~~~~~~~~~~l~~~~~~~~~vg~~~D~ 179 (287)
T 2x7v_A 121 GIDRIVRGLNEVLNNTEGVVILLENVSQK-GGNIGYKLEQLKKIRDLVDQRDRVAITYDT 179 (287)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEECCCCC-TTEECSSHHHHHHHHHHCSCGGGEEEEEEH
T ss_pred HHHHHHHHHHHHHcccCCCEEEEeCCCCC-CCccCCCHHHHHHHHHhcCCCCCeEEEEEh
Confidence 3456777888766 4788999998643 222 37888888873 4 565444443
No 221
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=90.26 E-value=1.3 Score=37.19 Aligned_cols=96 Identities=14% Similarity=0.003 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|. .+. + .+.++.|.+++++
T Consensus 173 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~i 243 (393)
T 4dwd_A 173 DIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWF--EEPV--QHY--H---VGAMGEVAQRLDI 243 (393)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEE--ECCS--CTT--C---HHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Ccc--c---HHHHHHHHhhCCC
Confidence 4667778888888886 78888754 45678999999999999987654 3453 121 1 3667888888999
Q ss_pred CEEEEeCCCCcccccCHHHHHHHH--cCCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLA--HHENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~--~~p~i~giK~s 119 (198)
||+.=. .-.+++.+.++. . ..++-+|-+
T Consensus 244 PIa~dE------~~~~~~~~~~~i~~~-~d~v~~k~~ 273 (393)
T 4dwd_A 244 TVSAGE------QTYTLQALKDLILSG-VRMVQPDIV 273 (393)
T ss_dssp EEEBCT------TCCSHHHHHHHHHHT-CCEECCCTT
T ss_pred CEEecC------CcCCHHHHHHHHHcC-CCEEEeCcc
Confidence 998632 234677888875 5 788889988
No 222
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=90.20 E-value=0.63 Score=37.16 Aligned_cols=62 Identities=18% Similarity=0.104 Sum_probs=47.9
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC----------------CCCHHHHHHHHHHHHccCCCCEEE--EeC
Q psy9711 30 GTYCESTRATIDLTQKAAKAGANAALILCPYYFQK----------------KMTEDLIYEHFISVADNSPIPVII--YNN 91 (198)
Q Consensus 30 gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~----------------~~~~~~i~~y~~~i~~~~~~pi~l--Yn~ 91 (198)
-.|.++.+.+++.++...+. +|.+.+.-||-.+. ..+-+.+.+..+++-+.+++|+++ |.+
T Consensus 23 ~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n 101 (271)
T 1ujp_A 23 TAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLN 101 (271)
T ss_dssp ETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHH
T ss_pred cCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCc
Confidence 46889999999999999999 99999999985321 112455667778887777899999 655
Q ss_pred C
Q psy9711 92 T 92 (198)
Q Consensus 92 P 92 (198)
|
T Consensus 102 ~ 102 (271)
T 1ujp_A 102 P 102 (271)
T ss_dssp H
T ss_pred H
Confidence 5
No 223
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=90.17 E-value=2.1 Score=34.02 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeCCCC---cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGTYCE---STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~---~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
-.+|.+|-..-.+.+++.+ +.+|++-.... |.+++++.++...++||++|-+-- ++++.+-.+.+.+
T Consensus 58 ~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~kaGa~aVklEg---------g~e~~~~I~al~~ 128 (264)
T 1m3u_A 58 LPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEG---------GEWLVETVQMLTE 128 (264)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHHTTCSEEECCC---------SGGGHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEECC---------cHHHHHHHHHHHH
Confidence 4578899999999998888 66777765443 789999999999999999998852 4456777777765
Q ss_pred cCCCCEEEE
Q psy9711 81 NSPIPVIIY 89 (198)
Q Consensus 81 ~~~~pi~lY 89 (198)
.++|++=+
T Consensus 129 -agipV~gH 136 (264)
T 1m3u_A 129 -RAVPVCGH 136 (264)
T ss_dssp -TTCCEEEE
T ss_pred -CCCCeEee
Confidence 58999843
No 224
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=90.07 E-value=1.6 Score=36.21 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcH-----------------HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 13 LKIISTLRQETKKTIIAGTYCEST-----------------RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~-----------------~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
+++++.+.+. ++|+-+||.+-|+ +.+++.++.+++.|.+-++++... + +....++-|
T Consensus 123 ~~vv~~ak~~-~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~----S-~v~~~i~ay 196 (366)
T 3noy_A 123 REIVEEAKRR-GVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKG----S-DVLQNVRAN 196 (366)
T ss_dssp HHHHHHHHHH-TCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC----S-SHHHHHHHH
T ss_pred HHHHHHHHHc-CCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeec----C-ChHHHHHHH
Confidence 3455555444 9999999765542 556888999999999988876443 2 377788999
Q ss_pred HHHHccCCCCEEEEe
Q psy9711 76 ISVADNSPIPVIIYN 90 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn 90 (198)
+.+++.++.|+-+=-
T Consensus 197 r~la~~~dyPLHlGv 211 (366)
T 3noy_A 197 LIFAERTDVPLHIGI 211 (366)
T ss_dssp HHHHHHCCCCEEECC
T ss_pred HHHHhccCCCEEEcc
Confidence 999999999986643
No 225
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=89.99 E-value=2.1 Score=36.68 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=31.1
Q ss_pred CCe-EEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy9711 24 KKT-IIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYF 62 (198)
Q Consensus 24 ~~p-vi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~ 62 (198)
++| |++=++. .+.++..+.++.++++|+|++.+..-...
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~ 336 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 336 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 468 8887664 34468899999999999999999977653
No 226
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=89.96 E-value=4.5 Score=33.26 Aligned_cols=149 Identities=9% Similarity=0.011 Sum_probs=88.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcC--------CCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQ--------KKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~--------~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.|+++++.+.+.++..+.++.+++.|+|+|-+- .|.... .-.+++-+.+-.+.+.+++++||.+=-.++
T Consensus 57 ~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g 136 (350)
T 3b0p_A 57 EHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG 136 (350)
T ss_dssp GCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC
Confidence 7899999988888999999999999999999887 354211 001366777777888888899998833222
Q ss_pred CcccccC----HHHHHHHHcCCCEEEEeeC-------------------CHHHHHHHHhhcCCCCeEEEe-cC--h-hhH
Q psy9711 94 VTNIDIS----VDTLVKLAHHENIRGVKDT-------------------DNIKLANMANQTKDLNFSVFA-GS--A-GYL 146 (198)
Q Consensus 94 ~tg~~l~----~~~l~~L~~~p~i~giK~s-------------------d~~~~~~~~~~~~~~~~~v~~-G~--d-~~~ 146 (198)
.... .+ .+...++.+. .+.+|..+ ++..+.++. +.. +++.|+. |. + ...
T Consensus 137 ~~~~-~~~~~~~~~a~~l~~a-G~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik-~~~-~~iPVianGgI~s~eda 212 (350)
T 3b0p_A 137 LEGK-ETYRGLAQSVEAMAEA-GVKVFVVHARSALLALSTKANREIPPLRHDWVHRLK-GDF-PQLTFVTNGGIRSLEEA 212 (350)
T ss_dssp BTTC-CCHHHHHHHHHHHHHT-TCCEEEEECSCBC----------CCCCCHHHHHHHH-HHC-TTSEEEEESSCCSHHHH
T ss_pred cCcc-ccHHHHHHHHHHHHHc-CCCEEEEecCchhcccCcccccCCCcccHHHHHHHH-HhC-CCCeEEEECCcCCHHHH
Confidence 2111 12 2333344332 22222221 344444444 333 3455543 32 1 234
Q ss_pred HHHhhcCCCeEEeccccc-chHHHHHHHHHHH
Q psy9711 147 LSGLLVGCAGGINALSAV-LGGPICELYDLAK 177 (198)
Q Consensus 147 ~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~ 177 (198)
...+. |+||++.|.+.+ -|.++.++.+.+.
T Consensus 213 ~~~l~-GaD~V~iGRa~l~~P~l~~~i~~~l~ 243 (350)
T 3b0p_A 213 LFHLK-RVDGVMLGRAVYEDPFVLEEADRRVF 243 (350)
T ss_dssp HHHHT-TSSEEEECHHHHHCGGGGTTHHHHTT
T ss_pred HHHHh-CCCEEEECHHHHhCcHHHHHHHHHhc
Confidence 45565 999999888754 3666555554443
No 227
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=89.86 E-value=1.4 Score=36.32 Aligned_cols=99 Identities=9% Similarity=0.084 Sum_probs=67.0
Q ss_pred HHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.+.++.+++.. ++++.+-+ ++.+.++ +++++..++.|++. +--|. .+. + .+.++.+.+++++||+.=
T Consensus 170 ~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~--iE~P~--~~~--~---~~~~~~l~~~~~ipIa~d 239 (368)
T 1sjd_A 170 VEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGLLL--IEQPL--EEE--D---VLGHAELARRIQTPICLD 239 (368)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCCSE--EECCS--CTT--C---HHHHHHHHTTCSSCEEES
T ss_pred HHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCCCe--EeCCC--Chh--h---HHHHHHHHHhCCCCEEEC
Confidence 45666666666 67777654 4456788 99999998988874 34553 121 1 466788888889999873
Q ss_pred eCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 90 NNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
. .-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 240 E------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 276 (368)
T 1sjd_A 240 E------SIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRV 276 (368)
T ss_dssp T------TCCSHHHHHHHHHTTCCSEEEECTTTTTSHHHHHHH
T ss_pred C------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHH
Confidence 3 2356788888874 4689999988 45444443
No 228
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=89.82 E-value=0.63 Score=38.83 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhc-CCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKA-GANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~-Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.++-.+.++.++++. ++++.+-+ ++.+.+++++.++..++. |++ ++--|. .+. + .+.++.+.++++
T Consensus 166 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~--~iEqP~--~~~--d---~~~~~~l~~~~~ 236 (382)
T 2gdq_A 166 SFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIG--WLEEPL--PFD--Q---PQDYAMLRSRLS 236 (382)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEE--EEECCS--CSS--C---HHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCe--EEECCC--Ccc--c---HHHHHHHHhhCC
Confidence 3455567778887776 78887755 455788999999998887 655 344553 121 2 456778888889
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+||+.=. .-.+++.+.++.+ .-+++-+|-+
T Consensus 237 iPIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~ 268 (382)
T 2gdq_A 237 VPVAGGE------NMKGPAQYVPLLSQRCLDIIQPDVM 268 (382)
T ss_dssp SCEEECT------TCCSHHHHHHHHHTTCCSEECCCTT
T ss_pred CCEEecC------CcCCHHHHHHHHHcCCCCEEecCcc
Confidence 9988733 2346788888874 4688889987
No 229
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=89.78 E-value=6.2 Score=32.73 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.+++++ ++++++=+ ++-+.++++++++..++.|+ ++--|.- + . +.++.+.+++++|
T Consensus 172 ~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i---~iEqP~~---~--~----~~~~~l~~~~~iP 239 (378)
T 3eez_A 172 VERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQPGE---T--L----DDIAAIRPLHSAP 239 (378)
T ss_dssp HHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC---CEECCSS---S--H----HHHHHTGGGCCCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe---EEecCCC---C--H----HHHHHHHhhCCCC
Confidence 556667788887776 78887754 45578899999999988875 3444542 2 2 4568888889999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|+.= +.-.+++.+.++.+ .-.++-+|-+ .+....++......-++.+..|
T Consensus 240 Ia~d------E~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A~~~g~~~~~~ 294 (378)
T 3eez_A 240 VSVD------ECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDIALTHGIDMFVM 294 (378)
T ss_dssp EEEC------TTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEC------CCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHcCCEEEcC
Confidence 8872 23456788888884 4688999987 5554444432111234555543
No 230
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=89.75 E-value=2.2 Score=35.82 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.+++++ ++++++=+ ++-+.++++++++..++.|++.+ --|. .+. + .+.++.|.+++++|
T Consensus 191 ~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EeP~--~~~--~---~~~~~~l~~~~~iP 261 (404)
T 4e5t_A 191 LERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWF--EEPI--PPE--K---PEDMAEVARYTSIP 261 (404)
T ss_dssp HHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEE--ECCS--CTT--C---HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEE--ECCC--Ccc--c---HHHHHHHHhhCCCC
Confidence 345567788888877 78888754 45678999999999999998754 3443 121 1 35678888899999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
|+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++
T Consensus 262 Ia~dE------~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~i 302 (404)
T 4e5t_A 262 VATGE------RLCTKYEFSRVLETGAASILQMNLGRVGGLLEAKKI 302 (404)
T ss_dssp EEECT------TCCHHHHHHHHHHHTCCSEECCCTTTSSCHHHHHHH
T ss_pred EEeCC------CcCCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 98733 2346778888874 4588999988 45544443
No 231
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=89.73 E-value=3.4 Score=34.99 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHhc--------------------CCe-EEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCc
Q psy9711 8 TEEEKLKIISTLRQET--------------------KKT-IIAGTYCE-STRATIDLTQKAAKAGANAALILCPYYF 62 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--------------------~~p-vi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~ 62 (198)
+.+.-.++++.+.++. ++| |++=++.. +.++..+.++.++++|+|++.+..-...
T Consensus 232 ~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~ 308 (415)
T 3i65_A 232 EAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQ 308 (415)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSC
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcc
Confidence 3455567888877751 578 88876654 3457899999999999999999876553
No 232
>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A
Probab=89.66 E-value=2 Score=37.26 Aligned_cols=81 Identities=6% Similarity=-0.086 Sum_probs=53.8
Q ss_pred cCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 4 SFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
...+..+||......+++.+ ++--.+.+++.+.++.+++++.++++|+.++|+-+-. ..+ .-..+.++.+
T Consensus 218 qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa~~~~eM~~Ra~~a~e~G~~~~mvd~~~--G~~-a~~~l~~~~r- 293 (493)
T 1bwv_A 218 QPFMRWRERYLFTMEAVNKASAATGEVKGHYLNVTAATMEEMYARANFAKELGSVIIMIDLVI--GYT-AIQTMAKWAR- 293 (493)
T ss_dssp BTTBCHHHHHHHHHHHHHHHHHHHTSCCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEEGGG--CHH-HHHHHHHHHH-
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhCCcceeeccCCCCCHHHHHHHHHHHHHhCCCeEEEeccc--ChH-HHHHHHHHHh-
Confidence 45567789987555444443 3445679998889999999999999999999886322 222 0233333333
Q ss_pred HHccCCCCEEEEeC
Q psy9711 78 VADNSPIPVIIYNN 91 (198)
Q Consensus 78 i~~~~~~pi~lYn~ 91 (198)
..++|+..+-.
T Consensus 294 ---~~~l~lh~HRA 304 (493)
T 1bwv_A 294 ---DNDMILHLHRA 304 (493)
T ss_dssp ---HTTCEEEEECT
T ss_pred ---hcCcEEEecCC
Confidence 35788777643
No 233
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=89.66 E-value=1.1 Score=37.20 Aligned_cols=97 Identities=6% Similarity=-0.005 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCc-HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCES-TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~-~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
+.++-.+.++.++++. ++++++=+ ++-+ .++++++++..++.|++.+ --|.. +. + .+.++.|.++++
T Consensus 175 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~i--EqP~~--~~--~---~~~~~~l~~~~~ 245 (374)
T 3sjn_A 175 DPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWI--EEPVL--AD--S---LISYEKLSRQVS 245 (374)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEE--ECSSC--TT--C---HHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEE--ECCCC--cc--c---HHHHHHHHhhCC
Confidence 4577778888888886 88988865 4456 8999999999999988754 34531 21 1 356788888899
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+||+.=. .-.+++.+.++.+ .-.++-+|-+
T Consensus 246 iPIa~dE------~~~~~~~~~~~l~~~~~d~v~~k~~ 277 (374)
T 3sjn_A 246 QKIAGGE------SLTTRYEFQEFITKSNADIVQPDIT 277 (374)
T ss_dssp SEEEECT------TCCHHHHHHHHHHHHCCSEECCBTT
T ss_pred CCEEeCC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 9998733 2345778888873 5789999988
No 234
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=89.65 E-value=2.7 Score=32.83 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhc---CCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 12 KLKIISTLRQET---KKTIIA-GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
..++++-+.+++ +..++. ..+..+.++..+..+.+.+.++|++++.+.... .....++.+. ..++|++
T Consensus 19 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-------~~~~~~~~~~-~~~iPvV 90 (305)
T 3g1w_A 19 WKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV-------ELTDTINKAV-DAGIPIV 90 (305)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT-------TTHHHHHHHH-HTTCCEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH-------HHHHHHHHHH-HCCCcEE
Confidence 344555555554 777776 667778888889999999999999999765321 1223344443 3689999
Q ss_pred EEeCCC
Q psy9711 88 IYNNTF 93 (198)
Q Consensus 88 lYn~P~ 93 (198)
++|.+.
T Consensus 91 ~~~~~~ 96 (305)
T 3g1w_A 91 LFDSGA 96 (305)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 998743
No 235
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=89.57 E-value=3.2 Score=33.92 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 10 EEKLKIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
..-.++++.+++.. ..||+.| +. + .+.++.+.++|||++.+.
T Consensus 134 ~~~~~~i~~lr~~~~~~~vi~G~v~--s----~e~A~~a~~aGad~Ivvs 177 (336)
T 1ypf_A 134 NAVINMIQHIKKHLPESFVIAGNVG--T----PEAVRELENAGADATKVG 177 (336)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEC--S----HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCcC--C----HHHHHHHHHcCCCEEEEe
Confidence 44567788888877 6788877 43 2 367888999999999995
No 236
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis}
Probab=89.51 E-value=6.3 Score=32.28 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH----HHHHHHHHccC---CCCEEEEeCCCCcccccCHHHHHHHHcCC-
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLI----YEHFISVADNS---PIPVIIYNNTFVTNIDISVDTLVKLAHHE- 111 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i----~~y~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~~~p- 111 (198)
++.++...++|+|++.+.-|.-... +++.. ..|++.|.+.. +.|++++-. |. ...+..|.+.+
T Consensus 196 ~~~~~~~~~aGad~i~i~D~~~~~l--sp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~----G~---~~~l~~l~~~g~ 266 (359)
T 2inf_A 196 IVYVKAQIKAGAKAIQIFDSWVGAL--NQADYRTYIKPVMNRIFSELAKENVPLIMFGV----GA---SHLAGDWHDLPL 266 (359)
T ss_dssp HHHHHHHHHTTCSEEEEECTTGGGS--CHHHHHHHTHHHHHHHHHHHGGGCSCEEEECT----TC---GGGHHHHHTSSC
T ss_pred HHHHHHHHHhCCCEEEEeCCccccC--CHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcC----Cc---HHHHHHHHHhCC
Confidence 4555666789999999988843333 36554 45567777666 688887642 32 22566677653
Q ss_pred CEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhH------------HHHhhcCC--CeEEecccc-----cchHHHHH
Q psy9711 112 NIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYL------------LSGLLVGC--AGGINALSA-----VLGGPICE 171 (198)
Q Consensus 112 ~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~------------~~~l~~G~--~G~is~~~n-----~~P~~~~~ 171 (198)
+++++-.. |+.... +. +++..+..+.|..+ -..+..|. .|.|-+.++ .-|+-+..
T Consensus 267 d~~~~d~~~d~~~~~----~~-g~~~~l~Gnldp~~l~~t~e~I~~~v~~~l~~~~~~~g~Il~~gcgi~~~~~~enl~a 341 (359)
T 2inf_A 267 DVVGLDWRLGIDEAR----SK-GITKTVQGNLDPSILLAPWEVIEQKTKEILDQGMESDGFIFNLGHGVFPDVSPEVLKK 341 (359)
T ss_dssp SEEECCTTSCHHHHH----HT-TCCSEEECCBCGGGGGSCHHHHHHHHHHHHHHHTTSSCEEBCBSSCCCTTSCHHHHHH
T ss_pred CEEEeCCCCCHHHHH----Hc-CCCEEEEecCChHHhcCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCCCCCcCHHHHHH
Confidence 68887444 765543 23 45555555444311 11122233 478877665 33566677
Q ss_pred HHHHHH
Q psy9711 172 LYDLAK 177 (198)
Q Consensus 172 l~~~~~ 177 (198)
+.++++
T Consensus 342 ~ve~v~ 347 (359)
T 2inf_A 342 LTAFVH 347 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776665
No 237
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*
Probab=89.50 E-value=1 Score=38.14 Aligned_cols=95 Identities=11% Similarity=-0.009 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.++++. ++++++-+ ++-+.++++++++..++.|++.+= -|. .+. + .+.++.|.+++++||
T Consensus 204 ~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~--~~~--d---~~~~~~l~~~~~iPI 274 (418)
T 3r4e_A 204 NYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE--DCT--PAE--N---QEAFRLVRQHTVTPL 274 (418)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE--SCS--CCS--S---GGGGHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE--CCC--Ccc--C---HHHHHHHHhcCCCCE
Confidence 34466788888887 88998865 456789999999999999987553 443 111 1 245778888899999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+.=. .-.+++.+.++.+ .-.++-+|-+
T Consensus 275 a~dE------~~~~~~~~~~~l~~~a~d~v~~k~~ 303 (418)
T 3r4e_A 275 AVGE------IFNTIWDAKDLIQNQLIDYIRATVV 303 (418)
T ss_dssp EECT------TCCSGGGTHHHHHTTCCSEECCCTT
T ss_pred EEcC------CcCCHHHHHHHHHcCCCCeEecCcc
Confidence 8733 2345677888874 4689999988
No 238
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=89.43 E-value=4.2 Score=33.25 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHH----HHHHHHHccC-----CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKKMTEDLIY----EHFISVADNS-----PIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~----~y~~~i~~~~-----~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
++.++...++|+|++++.-|.-...+ ++... .|++.+.+.. ++|++ |.. ..++ ..+..|.+.
T Consensus 196 ~~~~~~~~~aGad~iqi~D~~~~~ls--p~~f~ef~~p~~~~i~~~i~~~~~~~~~i-h~c-~g~~-----~~l~~l~~~ 266 (353)
T 1j93_A 196 AKYIRYQADSGAQAVQIFDSWATELS--PVDFEEFSLPYLKQIVDSVKLTHPNLPLI-LYA-SGSG-----GLLERLPLT 266 (353)
T ss_dssp HHHHHHHHHTTCSEEEEECGGGGGSC--HHHHHHHTHHHHHHHHHHHHHHSTTCCEE-EEC-SSCT-----TTGGGGGGG
T ss_pred HHHHHHHHHhCCCEEEEeCcccccCC--HHHHHHHhHHHHHHHHHHHHHhCCCCCEE-EEC-CChH-----HHHHHHHhc
Confidence 44555666899999999888532233 65544 4556666655 68875 443 2222 234455553
Q ss_pred -CCEEEEeeC-CHHHHHHHHhhcCCCCeEEEecChhhH------------HHHhh-cCCCeEEecccc-----cchHHHH
Q psy9711 111 -ENIRGVKDT-DNIKLANMANQTKDLNFSVFAGSAGYL------------LSGLL-VGCAGGINALSA-----VLGGPIC 170 (198)
Q Consensus 111 -p~i~giK~s-d~~~~~~~~~~~~~~~~~v~~G~d~~~------------~~~l~-~G~~G~is~~~n-----~~P~~~~ 170 (198)
.+++++-.. |+....+.+ +++..+..+.|..+ ...+. .|..|+|-+.++ .-|+-+.
T Consensus 267 g~d~~~~d~~~d~~~~~~~~----g~~~~l~Gnldp~~l~~~~e~i~~~v~~~l~~~~~~g~I~~~g~gi~~~~~~enl~ 342 (353)
T 1j93_A 267 GVDVVSLDWTVDMADGRRRL----GPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGIKVGTPEENFA 342 (353)
T ss_dssp CCSEEECCTTSCHHHHHHHT----CSSSEEECCBCGGGGGSCHHHHHHHHHHHHHHHCSSSEEBCBSSCCCTTCCHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHc----CCCeEEEecCCHHHHcCCHHHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCCHHHHH
Confidence 367777444 777665433 34555554434311 11122 255688876664 3456666
Q ss_pred HHHHHHHc
Q psy9711 171 ELYDLAKA 178 (198)
Q Consensus 171 ~l~~~~~~ 178 (198)
.+.+++++
T Consensus 343 a~ve~v~~ 350 (353)
T 1j93_A 343 HFFEIAKG 350 (353)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 67666653
No 239
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=89.41 E-value=4.6 Score=33.94 Aligned_cols=103 Identities=10% Similarity=0.011 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
+-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+= -|. ..+. + .+.++.|.+++++||+
T Consensus 198 ~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~-~~~~--~---~~~~~~l~~~~~iPIa 269 (410)
T 3dip_A 198 DGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVE--DPI-AKMD--N---IPAVADLRRQTRAPIC 269 (410)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEE--CCB-SCTT--C---HHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEE--CCC-CCcc--c---HHHHHHHHhhCCCCEE
Confidence 4456778888877 78888855 566789999999999999876543 441 1111 1 3567888888999998
Q ss_pred EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
.=. .-.+++.+.++.+ .-.++-+|-+ .+....++
T Consensus 270 ~dE------~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~i 308 (410)
T 3dip_A 270 GGE------NLAGTRRFHEMLCADAIDFVMLDLTWCGGLSEGRKI 308 (410)
T ss_dssp ECT------TCCSHHHHHHHHHTTCCSEEEECTTTSSCHHHHHHH
T ss_pred ecC------CcCCHHHHHHHHHcCCCCeEeecccccCCHHHHHHH
Confidence 832 3456888888874 4689999998 45544443
No 240
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=89.39 E-value=5.7 Score=31.24 Aligned_cols=93 Identities=8% Similarity=0.084 Sum_probs=65.8
Q ss_pred eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc---ccCH
Q psy9711 26 TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI---DISV 101 (198)
Q Consensus 26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~---~l~~ 101 (198)
.|.+-+...+.++.++.++.+.+.|+|.+=+---++...+ +.+.+.+..+.+-+.+ ++|+++-.-+...|- ..+.
T Consensus 21 ~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~-~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~ 99 (257)
T 2yr1_A 21 CICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAID-DQERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNE 99 (257)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTT-CHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCH
T ss_pred EEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccC-cHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCH
Confidence 3566778889999999999999999999999887775543 3567777777777777 799988776555444 4566
Q ss_pred HHHHHHH----cC--CCEEEEeeC
Q psy9711 102 DTLVKLA----HH--ENIRGVKDT 119 (198)
Q Consensus 102 ~~l~~L~----~~--p~i~giK~s 119 (198)
+...+|. +. +..+=+=..
T Consensus 100 ~~~~~ll~~~~~~g~~d~iDvEl~ 123 (257)
T 2yr1_A 100 AEVRRLIEAICRSGAIDLVDYELA 123 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEEGG
T ss_pred HHHHHHHHHHHHcCCCCEEEEECC
Confidence 6544443 32 445555444
No 241
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=89.20 E-value=0.98 Score=38.35 Aligned_cols=115 Identities=9% Similarity=-0.058 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
-.+.++.++++. ++++++-+ ++-+.++++++++..++.|++.+= -|.- +. + .+.++.|.+++++||+.
T Consensus 213 d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--qP~~--~~--d---~~~~~~l~~~~~iPIa~ 283 (425)
T 3vcn_A 213 VPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLE--DSVP--AE--N---QAGFRLIRQHTTTPLAV 283 (425)
T ss_dssp THHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE--CCSC--CS--S---TTHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE--CCCC--hh--h---HHHHHHHHhcCCCCEEe
Confidence 356778888877 88998865 456789999999999999987553 4431 11 1 23478888889999987
Q ss_pred EeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 89 YNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
=. .-.+++.+.++.+ .-.++-+|-+ .+....++......-++.+..+
T Consensus 284 dE------~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~h 335 (425)
T 3vcn_A 284 GE------IFAHVWDAKQLIEEQLIDYLRATVLHAGGITNLKKIAAFADLHHVKTGCH 335 (425)
T ss_dssp CT------TCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHHHHGGGTCEECCC
T ss_pred CC------CcCCHHHHHHHHHcCCCCeEecChhhcCCHHHHHHHHHHHHHcCCEEeec
Confidence 33 2345677888874 4689999988 3444444332111234555443
No 242
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=89.18 E-value=2.7 Score=34.51 Aligned_cols=75 Identities=8% Similarity=-0.103 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCC
Q psy9711 11 EKLKIISTLRQETKKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIP 85 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~p 85 (198)
+-.+.++.+.+. +..+...+ ...+.+..++.++.+.+.|++.+.+.--. ... +++++.+.++.+.+.+ ++|
T Consensus 121 ~~~~~i~~ak~~-G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~p 196 (345)
T 1nvm_A 121 VSKQHIEYARNL-GMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSG-GAM--SMNDIRDRMRAFKAVLKPETQ 196 (345)
T ss_dssp GGHHHHHHHHHH-TCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTT-CCC--CHHHHHHHHHHHHHHSCTTSE
T ss_pred HHHHHHHHHHHC-CCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCc-Ccc--CHHHHHHHHHHHHHhcCCCce
Confidence 344555555544 55555554 34456788999999999999977765432 223 3899999999999888 688
Q ss_pred EEEE
Q psy9711 86 VIIY 89 (198)
Q Consensus 86 i~lY 89 (198)
|-+|
T Consensus 197 i~~H 200 (345)
T 1nvm_A 197 VGMH 200 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 243
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=89.12 E-value=0.93 Score=35.91 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC-CCCCHHHHHHHHHHHHcc---CCCCEEEEeCCCCcccccCHHHHHHH
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQ-KKMTEDLIYEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKL 107 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~-~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~~tg~~l~~~~l~~L 107 (198)
|..+.++++++++.|.+.|.+.+.++|-+... ...+.+.+.++++++-+. .+.|+-|+- ..=+.+.++....|
T Consensus 15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~i~I~~---G~Ev~~~~~~~~~l 91 (262)
T 3qy7_A 15 GAGDSADSIEMARAAVRQGIRTIIATPHHNNGVYKNEPAAVREAADQLNKRLIKEDIPLHVLP---GQEIRIYGEVEQDL 91 (262)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEECCCBSEETTEECCHHHHHHHHHHHHHHHHHTTCCCEEEC---CCEEECCTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEec---CeEEecchhHHHHH
Confidence 55689999999999999999999998765321 111388999999888765 346666543 12234556666655
Q ss_pred H
Q psy9711 108 A 108 (198)
Q Consensus 108 ~ 108 (198)
.
T Consensus 92 ~ 92 (262)
T 3qy7_A 92 A 92 (262)
T ss_dssp H
T ss_pred h
Confidence 5
No 244
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=89.01 E-value=4.6 Score=33.39 Aligned_cols=100 Identities=8% Similarity=0.054 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.+++++ ++++.+-+ ++-+.++++++++..+ .|+ ++--|+. + .+.++.+.+++++|
T Consensus 173 ~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~i---~iEqP~~---d------~~~~~~l~~~~~iP 239 (378)
T 2qdd_A 173 PAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-ARD---WIEQPCQ---T------LDQCAHVARRVANP 239 (378)
T ss_dssp HHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CCC---EEECCSS---S------HHHHHHHHTTCCSC
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CCc---EEEcCCC---C------HHHHHHHHHhCCCC
Confidence 344456666666665 56666644 3345677777777665 554 4444432 1 34566666777777
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
|+.=. .-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 240 I~~dE------~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i 280 (378)
T 2qdd_A 240 IMLDE------CLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQI 280 (378)
T ss_dssp EEECT------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred EEECC------CcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence 77622 2335667777763 4577788777 45443333
No 245
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=88.99 E-value=2.9 Score=32.21 Aligned_cols=103 Identities=13% Similarity=-0.031 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEe-C-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAG-T-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~g-v-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
.++.++..++.+...+. ++.+... . ...+.+...+.++.|+++|+..+.+.|. . +..+...++++..+
T Consensus 57 ~~~~~~~~~~~~~l~~~-gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~p~--------~-~~l~~l~~~a~~~g 126 (257)
T 3lmz_A 57 NSTDEQIRAFHDKCAAH-KVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVGVPN--------Y-ELLPYVDKKVKEYD 126 (257)
T ss_dssp TCCHHHHHHHHHHHHHT-TCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEEEEC--------G-GGHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHc-CCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEecCC--------H-HHHHHHHHHHHHcC
Confidence 35677777777666555 5555432 2 1246777888889999999999987532 2 22344555666678
Q ss_pred CCEEEEeC-CCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 84 IPVIIYNN-TFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 84 ~pi~lYn~-P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+.+.+.|. |..+ ..-+++.+.++.+ .||+--.=|.
T Consensus 127 v~l~lEn~~~~~~-~~~~~~~~~~ll~~~~p~vg~~~D~ 164 (257)
T 3lmz_A 127 FHYAIHLHGPDIK-TYPDATDVWVHTKDLDPRIGMCLDV 164 (257)
T ss_dssp CEEEEECCCTTCS-SSCSHHHHHHHHTTSCTTEEEEEEH
T ss_pred CEEEEecCCCccc-ccCCHHHHHHHHHhCCCCccEEEch
Confidence 99999998 4322 2237778888874 4776555444
No 246
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=88.98 E-value=4.9 Score=35.42 Aligned_cols=113 Identities=12% Similarity=-0.010 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeCCC---------CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGTYC---------ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
+.+|-+.+++.+.+.. ++|+++..+- .+.++++... .+.|++++.+-.- .. ++.+..+.+.
T Consensus 150 ~~~Ea~aa~~a~~~~~~~~Pv~vS~t~~~~g~~~~G~~~~~~~~~l---~~~~~~avG~NC~----~g--p~~~~~~l~~ 220 (566)
T 1q7z_A 150 DILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITF---DELDIDALGINCS----LG--PEEILPIFQE 220 (566)
T ss_dssp CHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTSCCHHHHHHHH---HTSSCSEEEEESS----SC--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEEEcCCCeeCCCCcHHHHHHHh---hccCCCEEEEeCC----CC--HHHHHHHHHH
Confidence 5677788888887764 8999987642 2345555544 4578998887642 22 8999999999
Q ss_pred HHccCCCCEEEEeCCCC-------cccccCHHHHHHHH----c-CCCEEEEeeC-CHHHHHHHHh
Q psy9711 78 VADNSPIPVIIYNNTFV-------TNIDISVDTLVKLA----H-HENIRGVKDT-DNIKLANMAN 129 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~-------tg~~l~~~~l~~L~----~-~p~i~giK~s-d~~~~~~~~~ 129 (198)
+...++.|+++|-|-+. +.++.+|+.+.+.+ + --+|+|=-.. ++.+++++.+
T Consensus 221 l~~~~~~p~~vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~aia~ 285 (566)
T 1q7z_A 221 LSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRK 285 (566)
T ss_dssp HHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHH
T ss_pred HHhcCCCEEEEEcCCCCCcccCCccccCCCHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHH
Confidence 99888999999976322 23456787666544 2 2588888877 8888877653
No 247
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=88.97 E-value=1.8 Score=33.41 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNT 92 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P 92 (198)
++++.+.+ .+.+++.|+. +..| ++.|.+.|+|.+.+-| .. .-+=.+|.+++.... ++|++-
T Consensus 101 ~v~~~ar~-~g~~~i~Gv~--t~~e----~~~A~~~Gad~vk~Fp-----a~--~~gG~~~lk~l~~~~~~ipvva---- 162 (224)
T 1vhc_A 101 KIVKLCQD-LNFPITPGVN--NPMA----IEIALEMGISAVKFFP-----AE--ASGGVKMIKALLGPYAQLQIMP---- 162 (224)
T ss_dssp HHHHHHHH-TTCCEECEEC--SHHH----HHHHHHTTCCEEEETT-----TT--TTTHHHHHHHHHTTTTTCEEEE----
T ss_pred HHHHHHHH-hCCCEEeccC--CHHH----HHHHHHCCCCEEEEee-----Cc--cccCHHHHHHHHhhCCCCeEEE----
Confidence 34444444 3788888854 3444 4567789999999933 11 111258888998877 688864
Q ss_pred CCcccccCHHHHHHHHcCCCEEEEe
Q psy9711 93 FVTNIDISVDTLVKLAHHENIRGVK 117 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~p~i~giK 117 (198)
..| ++++.+.++.+.+++.|+=
T Consensus 163 -iGG--I~~~N~~~~l~agga~~v~ 184 (224)
T 1vhc_A 163 -TGG--IGLHNIRDYLAIPNIVACG 184 (224)
T ss_dssp -BSS--CCTTTHHHHHTSTTBCCEE
T ss_pred -ECC--cCHHHHHHHHhcCCCEEEE
Confidence 234 5667888888776655553
No 248
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=88.95 E-value=7.5 Score=30.91 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=59.8
Q ss_pred CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711 24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 94 (198)
Q Consensus 24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~ 94 (198)
+..||+=+--.|. .+..++++.+++.||+++.+. -|.|+..+ .+ |.+.+.+.+++||+.=++
T Consensus 58 ~~~vIaE~KraSPSkG~i~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs--~~----~L~~ir~~v~lPVl~Kdf--- 128 (272)
T 3tsm_A 58 QFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGA--PE----FLTAARQACSLPALRKDF--- 128 (272)
T ss_dssp CCEEEEEECSEETTTEESCSSCCHHHHHHHHHHTTCSEEEEECCSTTTCCC--HH----HHHHHHHTSSSCEEEESC---
T ss_pred CceEEEEeccCCCCCCccCCCCCHHHHHHHHHHCCCCEEEEeccccccCCC--HH----HHHHHHHhcCCCEEECCc---
Confidence 4678887644432 367899999999999999886 45566554 54 668888889999985442
Q ss_pred cccccCHHHHHHHHcCC-CEEEEeeC--CHHHHHHH
Q psy9711 95 TNIDISVDTLVKLAHHE-NIRGVKDT--DNIKLANM 127 (198)
Q Consensus 95 tg~~l~~~~l~~L~~~p-~i~giK~s--d~~~~~~~ 127 (198)
-+++..+.+..... ..+-+-.+ +...+.++
T Consensus 129 ---i~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l 161 (272)
T 3tsm_A 129 ---LFDPYQVYEARSWGADCILIIMASVDDDLAKEL 161 (272)
T ss_dssp ---CCSTHHHHHHHHTTCSEEEEETTTSCHHHHHHH
T ss_pred ---cCCHHHHHHHHHcCCCEEEEcccccCHHHHHHH
Confidence 34555565555432 44444444 44444443
No 249
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=88.92 E-value=1.4 Score=36.40 Aligned_cols=119 Identities=10% Similarity=0.084 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|.. + ++ .+.++.+.+++++
T Consensus 166 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~~--~----~d-~~~~~~l~~~~~i 236 (356)
T 3ro6_B 166 DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFI--EQPFP--A----GR-TDWLRALPKAIRR 236 (356)
T ss_dssp CHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCE--ECCSC--T----TC-HHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEE--ECCCC--C----Cc-HHHHHHHHhcCCC
Confidence 4556667788888876 78888754 45578999999999999887654 34531 2 11 3556777777889
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc---CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH---HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
||+.= ..-.+++.+.++.+ .-.++-+|-+ .+....++......-++.+..|
T Consensus 237 PIa~d------E~~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~ 293 (356)
T 3ro6_B 237 RIAAD------ESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMWG 293 (356)
T ss_dssp TEEES------TTCCSHHHHHHHHSSSCSCSEEEECHHHHCSHHHHHHHHHHHHHHTCEEEEC
T ss_pred CEEeC------CcCCCHHHHHHHHhcCCcCCEEEEcccccCCHHHHHHHHHHHHHcCCEEEec
Confidence 98873 23456788888885 4688899987 4554444432111234555544
No 250
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=88.69 E-value=7.5 Score=30.56 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=61.8
Q ss_pred CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc--cc
Q psy9711 24 KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--DI 99 (198)
Q Consensus 24 ~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~--~l 99 (198)
+.| |.+-+.+.+.++.++.++.+.+.|+|.|=+---++.... +.+.+.+-...+.+.. ++|+++=.-+..-|- ..
T Consensus 18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~-~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~ 96 (258)
T 4h3d_A 18 GRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVE-NIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLI 96 (258)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTT-CHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCC
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccC-CHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCC
Confidence 445 556777889999999999999999999999887776543 3788888888887776 699998876665443 35
Q ss_pred CHHHHHH
Q psy9711 100 SVDTLVK 106 (198)
Q Consensus 100 ~~~~l~~ 106 (198)
+.+...+
T Consensus 97 ~~~~~~~ 103 (258)
T 4h3d_A 97 SRDYYTT 103 (258)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5554433
No 251
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=88.59 E-value=7.6 Score=30.50 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711 16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t 95 (198)
++.+.+++.+||+.----.++-+ +..+..+|||++++..-. .+ ++++.++++. +...++.+++==
T Consensus 93 L~~ir~~v~lPvLrKDfi~~~~q----i~ea~~~GAD~ilLi~a~---l~--~~~l~~l~~~-a~~lGl~~lvEv----- 157 (251)
T 1i4n_A 93 VRAARNLTCRPILAKDFYIDTVQ----VKLASSVGADAILIIARI---LT--AEQIKEIYEA-AEELGMDSLVEV----- 157 (251)
T ss_dssp HHHHHTTCCSCEEEECCCCSTHH----HHHHHHTTCSEEEEEGGG---SC--HHHHHHHHHH-HHTTTCEEEEEE-----
T ss_pred HHHHHHhCCCCEEEeeCCCCHHH----HHHHHHcCCCEEEEeccc---CC--HHHHHHHHHH-HHHcCCeEEEEe-----
Confidence 44444545899986432222222 344888999999998663 33 6666666655 445688877632
Q ss_pred ccccCHHHHHHHHcC--CCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEeccc
Q psy9711 96 NIDISVDTLVKLAHH--ENIRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 96 g~~l~~~~l~~L~~~--p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~ 162 (198)
-+.+.+.+..+. +.++|+-.. |+....+++. ..+++..+++..+ +........ ++|++-|.+
T Consensus 158 ---~~~eE~~~A~~l~g~~iIGinnr~l~t~~~d~~~~~~l~~-~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~a 232 (251)
T 1i4n_A 158 ---HSREDLEKVFSVIRPKIIGINTRDLDTFEIKKNVLWELLP-LVPDDTVVVAESGIKDPRELKDLRGK-VNAVLVGTS 232 (251)
T ss_dssp ---CSHHHHHHHHTTCCCSEEEEECBCTTTCCBCTTHHHHHGG-GSCTTSEEEEESCCCCGGGHHHHTTT-CSEEEECHH
T ss_pred ---CCHHHHHHHHhcCCCCEEEEeCcccccCCCCHHHHHHHHH-hCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHH
Confidence 145667666655 689999764 6677777774 4455555553322 245566778 999998876
Q ss_pred cc
Q psy9711 163 AV 164 (198)
Q Consensus 163 n~ 164 (198)
-+
T Consensus 233 im 234 (251)
T 1i4n_A 233 IM 234 (251)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 252
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=88.50 E-value=2.7 Score=35.19 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|.- + ++-.+.++.|.+++++
T Consensus 181 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~~--~----~d~~~~~~~l~~~~~i 252 (392)
T 3ddm_A 181 DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWL--EEPLR--A----DRPAAEWAELAQAAPM 252 (392)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEE--ECCSC--T----TSCHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEE--ECCCC--c----cchHHHHHHHHHhcCC
Confidence 4566677888888886 78888855 55678999999999999987754 34541 1 1114667888888999
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
||+.=. .-.+++.+.++.+ .-.++-+|-+
T Consensus 253 PIa~dE------~~~~~~~~~~~i~~~a~d~v~~k~~ 283 (392)
T 3ddm_A 253 PLAGGE------NIAGVAAFETALAARSLRVMQPDLA 283 (392)
T ss_dssp CEEECT------TCCSHHHHHHHHHHTCEEEECCCTT
T ss_pred CEEeCC------CCCCHHHHHHHHHcCCCCEEEeCcc
Confidence 998732 3456888888874 3467777776
No 253
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=88.48 E-value=2.1 Score=32.79 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=49.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD 102 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~ 102 (198)
+++++.|+.+ ..| ++.|.+.|+|.+.+-| .. .-+=.+|.+.+.... ++|++- ..| ++++
T Consensus 109 g~~~i~G~~t--~~e----~~~A~~~Gad~v~~Fp-----a~--~~gG~~~lk~i~~~~~~ipvva-----iGG--I~~~ 168 (214)
T 1wbh_A 109 TIPLIPGIST--VSE----LMLGMDYGLKEFKFFP-----AE--ANGGVKALQAIAGPFSQVRFCP-----TGG--ISPA 168 (214)
T ss_dssp SSCEEEEESS--HHH----HHHHHHTTCCEEEETT-----TT--TTTHHHHHHHHHTTCTTCEEEE-----BSS--CCTT
T ss_pred CCCEEEecCC--HHH----HHHHHHCCCCEEEEec-----Cc--cccCHHHHHHHhhhCCCCeEEE-----ECC--CCHH
Confidence 7888888543 333 4667789999999833 11 111257888998877 688864 234 5567
Q ss_pred HHHHHHcCCCEEEEe
Q psy9711 103 TLVKLAHHENIRGVK 117 (198)
Q Consensus 103 ~l~~L~~~p~i~giK 117 (198)
.+.++.+.+++.|+=
T Consensus 169 n~~~~l~agg~~~v~ 183 (214)
T 1wbh_A 169 NYRDYLALKSVLCIG 183 (214)
T ss_dssp THHHHHTSTTBSCEE
T ss_pred HHHHHHhcCCCeEEE
Confidence 888888776555553
No 254
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=88.40 E-value=3.9 Score=34.51 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+++++ ++++++=+ ++-+.++++++++..++.|++.+ --|. .+ ++ .+.++.|.+++++||
T Consensus 214 ~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~i--EeP~--~~----~d-~~~~~~l~~~~~iPI 284 (412)
T 3stp_A 214 RENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWL--EEPV--IA----DD-VAGYAELNAMNIVPI 284 (412)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS--CT----TC-HHHHHHHHHTCSSCE
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--Cc----cc-HHHHHHHHhCCCCCE
Confidence 44566778888877 78888855 55678999999999999988754 3453 12 11 356688888899999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+.= ..-.++..+.++.+ .-.++-+|-+
T Consensus 285 a~d------E~~~~~~~~~~li~~~a~D~v~ik~~ 313 (412)
T 3stp_A 285 SGG------EHEFSVIGCAELINRKAVSVLQYDTN 313 (412)
T ss_dssp EEC------TTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred EeC------CCCCCHHHHHHHHHcCCCCEEecChh
Confidence 872 33457888888885 4578888887
No 255
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=88.39 E-value=2.2 Score=35.85 Aligned_cols=103 Identities=8% Similarity=0.023 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|.- +. + .+.++.|.+++++||
T Consensus 185 ~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~i--EqP~~--~~----~-~~~~~~l~~~~~iPI 255 (401)
T 3sbf_A 185 DNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFI--EDILP--PN----Q-TEWLDNIRSQSSVSL 255 (401)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCE--ECSSC--TT----C-GGGHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCCC--hh----H-HHHHHHHHhhCCCCE
Confidence 34466778888877 88988855 55678999999999999987754 34431 11 1 245788989999999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++
T Consensus 256 a~dE------~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~ki 295 (401)
T 3sbf_A 256 GLGE------LFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKL 295 (401)
T ss_dssp EECT------TCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHH
T ss_pred EeCC------ccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHH
Confidence 8732 3456888888884 4688999987 45544443
No 256
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=88.37 E-value=2.3 Score=35.22 Aligned_cols=118 Identities=12% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++ .+--|. .+. + .+.++.|.+++++|
T Consensus 171 ~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~--~~~--~---~~~~~~l~~~~~iP 241 (370)
T 1chr_A 171 PQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPV--GRE--N---TQALRRLSDNNRVA 241 (370)
T ss_dssp SHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEE--EEECCS--CTT--C---HHHHHHHHHHSCSE
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCC--EEECCC--Ccc--c---HHHHHHHHhhCCCC
Confidence 455567788888887 68888754 455688999999999998754 344564 121 2 35678888889999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++......-++.+..|
T Consensus 242 ia~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~g~~~~~~ 296 (370)
T 1chr_A 242 IMADE------SLSTLASAFDLARDRSVDVFSLKLCNMGGVSATQKIAAVAEASGIASYGG 296 (370)
T ss_dssp EEESS------SCCSHHHHHHHHTTTSCSEEEECTTTSCSHHHHHHHHHHHHHHTCEEEEC
T ss_pred EEeCC------CcCCHHHHHHHHHcCCCCEEEECccccCCHHHHHHHHHHHHHcCCeEEec
Confidence 98732 2356788888885 4689999988 4555444432111234555544
No 257
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=88.37 E-value=1.7 Score=36.51 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-----------CCCcCCCCCHHHHHHHHHH
Q psy9711 10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-----------PYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-----------P~y~~~~~~~~~i~~y~~~ 77 (198)
+.-.++++.+.+.. ++||++|... + .+.++.+.++|+|++.+.. +.+..+ +-+.+....+
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~-~----~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p---~~~~l~~v~~ 250 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIV-T----KEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVP---QITAICDVYE 250 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEEC-S----HHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCC-c----HHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcc---hHHHHHHHHH
Confidence 45567788888877 8999974222 2 4677888899999999921 111111 3334444455
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+++..++||+. .|---+++.+.+...
T Consensus 251 ~~~~~~ipVia------~GGI~~~~d~~~ala 276 (404)
T 1eep_A 251 ACNNTNICIIA------DGGIRFSGDVVKAIA 276 (404)
T ss_dssp HHTTSSCEEEE------ESCCCSHHHHHHHHH
T ss_pred HHhhcCceEEE------ECCCCCHHHHHHHHH
Confidence 55566788875 333335555555554
No 258
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=88.12 E-value=9.3 Score=32.35 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=84.7
Q ss_pred CCeEEEeCCCCc-----HHHHHHHHHHHHhcCCCEEEEc--CCCCcCC--CCCHHHHHHHHHHHHcc-------------
Q psy9711 24 KKTIIAGTYCES-----TRATIDLTQKAAKAGANAALIL--CPYYFQK--KMTEDLIYEHFISVADN------------- 81 (198)
Q Consensus 24 ~~pvi~gv~~~~-----~~~~i~~a~~a~~~Gad~v~~~--~P~y~~~--~~~~~~i~~y~~~i~~~------------- 81 (198)
+.|+++.++.+. .+|-++.++...+. +|++-+- .|.--.. -.+++.+.+..+.|-++
T Consensus 181 ~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~ 259 (415)
T 3i65_A 181 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDE 259 (415)
T ss_dssp TCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHH
T ss_pred CceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhccccccccc
Confidence 467888888876 68888888888876 8887754 4542111 02467777777777654
Q ss_pred -------CCCC-EEEEeCCCCcccccCHHHHHHHH---cCCCEEEEeeC-------C----------------H----HH
Q psy9711 82 -------SPIP-VIIYNNTFVTNIDISVDTLVKLA---HHENIRGVKDT-------D----------------N----IK 123 (198)
Q Consensus 82 -------~~~p-i~lYn~P~~tg~~l~~~~l~~L~---~~p~i~giK~s-------d----------------~----~~ 123 (198)
.++| |++==.|. ++.+.+.+++ +--.+.||-.+ | . ..
T Consensus 260 ~~~~~~~~~~P~V~VKi~pd-----~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~ 334 (415)
T 3i65_A 260 FLWFNTTKKKPLVFVKLAPD-----LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF 334 (415)
T ss_dssp HHCCSSSSSCCEEEEEECSC-----CCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHH
T ss_pred ccccccCCCCCeEEEEecCC-----CCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHH
Confidence 3689 78766664 3433333333 21233333332 1 1 22
Q ss_pred HHHHHhhcCCCCeEEEec--Ch--hhHHHHhhcCCCeEEecccccc--hHHHHHHHHHH
Q psy9711 124 LANMANQTKDLNFSVFAG--SA--GYLLSGLLVGCAGGINALSAVL--GGPICELYDLA 176 (198)
Q Consensus 124 ~~~~~~~~~~~~~~v~~G--~d--~~~~~~l~~G~~G~is~~~n~~--P~~~~~l~~~~ 176 (198)
+.++. +..++++.|+.. .. ......+..|++++..+.+.+. |.++.++.+.+
T Consensus 335 I~~v~-~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L 392 (415)
T 3i65_A 335 ICEMY-NYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKREL 392 (415)
T ss_dssp HHHHH-HHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHH
T ss_pred HHHHH-HHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHH
Confidence 33333 334445555532 22 2456778899999999988653 77776666544
No 259
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=88.09 E-value=5.7 Score=33.04 Aligned_cols=118 Identities=8% Similarity=0.083 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 9 EEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|. . +++ .+.++.|.+++++||
T Consensus 176 ~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~i--EqP~--~----~~d-~~~~~~l~~~~~iPI 246 (385)
T 3i6e_A 176 HAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFI--EQPV--R----AHH-FELMARLRGLTDVPL 246 (385)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCE--ECCS--C----TTC-HHHHHHHHTTCSSCE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE--ECCC--C----ccc-HHHHHHHHHhCCCCE
Confidence 345566777777777 78888754 44568899999999999887643 3443 1 111 466788888899999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
..=. .-.++..+.++.+ .-.++-+|-+ .+....++......-++.+..|
T Consensus 247 a~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~ 300 (385)
T 3i6e_A 247 LADE------SVYGPEDMVRAAHEGICDGVSIKIMKSGGLTRAQTVARIAAAHGLMAYGG 300 (385)
T ss_dssp EEST------TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEeC------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCEEEeC
Confidence 8732 2356778888874 4688999987 4554444332111234555544
No 260
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=88.09 E-value=1.6 Score=33.47 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
++.++.++.+.+.|+|++.+..+....+. .....+..+.+.+.+++|+++-. .-.+++.+.++.+
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~~~--~~~~~~~i~~i~~~~~ipvi~~g------~i~~~~~~~~~~~ 97 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAPEG--RATFIDSVKRVAEAVSIPVLVGG------GVRSLEDATTLFR 97 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTTT--HHHHHHHHHHHHHHCSSCEEEES------SCCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccccC--CcccHHHHHHHHHhcCCCEEEEC------CCCCHHHHHHHHH
Confidence 46789999999999999998865433333 55567788899988999999743 2345666666665
No 261
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=88.08 E-value=7.2 Score=30.98 Aligned_cols=152 Identities=9% Similarity=-0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEE--EEe
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVI--IYN 90 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~--lYn 90 (198)
+.++.+.+..++|++++..-.+ .+.++.+.++|||++ ..+.-..+. +..+.+.+.. +++++ +.|
T Consensus 68 ~~i~~i~~~~~~Pvi~~~~~~~----~~~~~~~~~aGad~v--~~~~~~~~~-------~~~~~~~~~~~~i~l~~~v~~ 134 (297)
T 2zbt_A 68 KIIKEIMAAVSIPVMAKVRIGH----FVEAMILEAIGVDFI--DESEVLTPA-------DEEHHIDKWKFKVPFVCGARN 134 (297)
T ss_dssp HHHHHHHTTCSSCEEEEEETTC----HHHHHHHHHTTCSEE--EEETTSCCS-------CSSCCCCGGGCSSCEEEEESS
T ss_pred HHHHHHHHhcCCCeEEEeccCC----HHHHHHHHHCCCCEE--eeeCCCChH-------HHHHHHHHhCCCceEEeecCC
Q ss_pred CCCCcccccCHHHHHHHH-cCCCEEEEe---------------------------------------eC-CHHHHHHHHh
Q psy9711 91 NTFVTNIDISVDTLVKLA-HHENIRGVK---------------------------------------DT-DNIKLANMAN 129 (198)
Q Consensus 91 ~P~~tg~~l~~~~l~~L~-~~p~i~giK---------------------------------------~s-d~~~~~~~~~ 129 (198)
++...+.. .-..+++++ .. ++..+.++.
T Consensus 135 ----------~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~- 203 (297)
T 2zbt_A 135 ----------LGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH- 203 (297)
T ss_dssp ----------HHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH-
T ss_pred ----------HHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH-
Q ss_pred hcCCCCeE--EEecC--hhhHHHHhhcCCCeEEecccccch----HHHHHHHHHHHcC-CHHHHHHHHH
Q psy9711 130 QTKDLNFS--VFAGS--AGYLLSGLLVGCAGGINALSAVLG----GPICELYDLAKAG-KWEEAMKLQH 189 (198)
Q Consensus 130 ~~~~~~~~--v~~G~--d~~~~~~l~~G~~G~is~~~n~~P----~~~~~l~~~~~~g-d~~~A~~l~~ 189 (198)
+..+-++. +-.|- .+.+...+..|++|++.|.+-+-. +...++.+.+.+. +.+.+..+.+
T Consensus 204 ~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~i~~~~~~~~~~~~~~ 272 (297)
T 2zbt_A 204 DHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYNDPEVLAEVSE 272 (297)
T ss_dssp HHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred HhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHHHhchHhhhHHHH
No 262
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=88.07 E-value=3.9 Score=34.48 Aligned_cols=104 Identities=15% Similarity=0.107 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|. .+. + .+.++.|.+++++|
T Consensus 184 ~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~--~~~--d---~~~~~~l~~~~~iP 254 (412)
T 4e4u_A 184 LDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWF--EEPV--PPG--Q---EEAIAQVAKHTSIP 254 (412)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEE--ECCS--CSS--C---HHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEE--ECCC--Chh--h---HHHHHHHHhhCCCC
Confidence 345566778888877 78888854 45678999999999999987754 3443 121 1 36678888899999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
|+.=. .-.+++.+.++.+ .-.++-+|-+ .+....++
T Consensus 255 Ia~dE------~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~ki 295 (412)
T 4e4u_A 255 IATGE------RLTTKYEFHKLLQAGGASILQLNVARVGGLLEAKKI 295 (412)
T ss_dssp EEECT------TCCHHHHHHHHHHTTCCSEECCCTTTTTSHHHHHHH
T ss_pred EEecC------ccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHH
Confidence 98733 2346778888874 4588889988 45544443
No 263
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=88.06 E-value=2.3 Score=35.98 Aligned_cols=102 Identities=9% Similarity=0.017 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
+-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|.- +++ .+.++.|.+++++||+
T Consensus 207 ~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~i--EqP~~------~~d-~~~~~~l~~~~~iPIa 277 (422)
T 3tji_A 207 NTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFI--EDILP------PQQ-SAWLEQVRQQSCVPLA 277 (422)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCSC------GGG-GGGHHHHHHHCCCCEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeE--ECCCC------hhh-HHHHHHHHhhCCCCEE
Confidence 4456778888876 88888855 45678999999999999987644 34431 222 3557889899999998
Q ss_pred EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
.=. .-.+++.+.++.+ .-.++-+|-+ .+....++
T Consensus 278 ~dE------~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~ki 316 (422)
T 3tji_A 278 LGE------LFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKL 316 (422)
T ss_dssp ECT------TCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHH
T ss_pred EeC------CcCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHH
Confidence 733 2345667888874 4588889987 45544443
No 264
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=88.05 E-value=7.6 Score=29.87 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHH-HHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRAT-IDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~-i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+++...+..+.+|++=+--.+..++ -..++.+.++|+|.+-+.+ + .. .+.+....+.+ +..+..+++=..-+
T Consensus 55 ~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~-~---~G--~~~l~~~~~~~-~~~g~~v~vLt~~s 127 (228)
T 3m47_A 55 IIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHG-F---PG--ADSVRACLNVA-EEMGREVFLLTEMS 127 (228)
T ss_dssp HHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES-T---TC--HHHHHHHHHHH-HHHTCEEEEECCCC
T ss_pred HHHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEec-c---CC--HHHHHHHHHHH-HhcCCCeEEEEeCC
Confidence 3444443115667665433344544 3356677889999988853 2 12 44455544444 33344454422111
Q ss_pred Cccc-cc-C--HHHHHHHHcCCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEec-Ch---hhHHHHhhcCCCeEEeccc
Q psy9711 94 VTNI-DI-S--VDTLVKLAHHENIRGVKDT--DNIKLANMANQTKDLNFSVFAG-SA---GYLLSGLLVGCAGGINALS 162 (198)
Q Consensus 94 ~tg~-~l-~--~~~l~~L~~~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G-~d---~~~~~~l~~G~~G~is~~~ 162 (198)
..+. .. . .+.+.+++..+.+.|+..+ .+..+.++. +..+++|.++++ .. ... ..+..|++..+.|-+
T Consensus 128 ~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~~~e~~~ir-~~~~~~~~iv~PGI~~~g~~p-~~~~aGad~iVvGr~ 204 (228)
T 3m47_A 128 HPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLR-EIIGQDSFLISPGVGAQGGDP-GETLRFADAIIVGRS 204 (228)
T ss_dssp SGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSCHHHHHHHH-HHHCSSSEEEECC----------CGGGTCSEEEECHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhCCcEEEECCCChHHHHHHH-HhcCCCCEEEecCcCcCCCCH-hHHHcCCCEEEECHH
Confidence 1111 11 1 1334555556788999998 466666655 344565776653 21 123 778899998887743
No 265
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=88.04 E-value=2.2 Score=33.74 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..+++..+..+.+...+..+.+.+.++|++++.|.. .+.....++.+. ..++|+++
T Consensus 18 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~-------~~~~~~~~~~~~-~~giPvV~ 89 (330)
T 3uug_A 18 WIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASID-------GTTLSDVLKQAG-EQGIKVIA 89 (330)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSS-------GGGGHHHHHHHH-HTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCC-------chhHHHHHHHHH-HCCCCEEE
Confidence 344555555554 7777666677788888899999989999999997653 222223444443 46999999
Q ss_pred EeCCC
Q psy9711 89 YNNTF 93 (198)
Q Consensus 89 Yn~P~ 93 (198)
+|.+.
T Consensus 90 ~~~~~ 94 (330)
T 3uug_A 90 YDRLI 94 (330)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98743
No 266
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*
Probab=87.88 E-value=3.3 Score=35.25 Aligned_cols=103 Identities=9% Similarity=0.047 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|.- +++ .+.++.|.+++++||
T Consensus 224 ~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~~------~~d-~~~~~~l~~~~~iPI 294 (440)
T 3t6c_A 224 KSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFL--EDPVA------PEN-TEWLKMLRQQSSTPI 294 (440)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEE--ECSSC------GGG-GGGHHHHHHHCCSCE
T ss_pred HHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEE--ECCCC------hhh-HHHHHHHHhhcCCCE
Confidence 34466788888877 78888855 55678999999999999987654 34431 222 345788888999999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
+.=. .-.+.+.+.++.+ .-.++-+|-+ .+....++
T Consensus 295 a~dE------~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~i 334 (440)
T 3t6c_A 295 AMGE------LFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKI 334 (440)
T ss_dssp EECT------TCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHH
T ss_pred EeCc------ccCCHHHHHHHHHcCCccceeechhhhCCHHHHHHH
Confidence 8732 3456888888884 4688999987 45544443
No 267
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=87.74 E-value=4.7 Score=31.95 Aligned_cols=101 Identities=9% Similarity=0.150 Sum_probs=62.1
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
.+++.+.+.- |+--++|+--...+++++..+.+.+.|+.|+-+.+.+.. ....+++.+...|+.. +..++||+++--
T Consensus 81 ~~~~~~~~~p~r~~~~~~v~p~~~~~a~~eL~~~~~~g~~Gi~~~~~~~~~~~~~~d~~~~~~~~~a-~e~glpv~iH~~ 159 (291)
T 3irs_A 81 DVAAVAKAYPDKFHPVGSIEAATRKEAMAQMQEILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFC-EDNGIPVIMMTG 159 (291)
T ss_dssp HHHHHHHHSTTTEEEEEECCCSSHHHHHHHHHHHHHTTCCCEEECGGGSSSCCCTTCGGGHHHHHHH-HHTTCCEEEECS
T ss_pred HHHHHHHHCCCcEEEEEecCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHH-HHcCCeEEEeCC
Confidence 3444444433 555567776555677777777788999999998743321 1111256666666655 457999999975
Q ss_pred CCCccc--c-cCHHHHHHHH-cCCCEEEE
Q psy9711 92 TFVTNI--D-ISVDTLVKLA-HHENIRGV 116 (198)
Q Consensus 92 P~~tg~--~-l~~~~l~~L~-~~p~i~gi 116 (198)
.. .|. . -.+..+.+++ ++|++..+
T Consensus 160 ~~-~~~~~~~~~p~~~~~v~~~~P~l~iv 187 (291)
T 3irs_A 160 GN-AGPDITYTNPEHIDRVLGDFPDLTVV 187 (291)
T ss_dssp SS-CSSSGGGGCHHHHHHHHHHCTTCCEE
T ss_pred CC-CCCCCccCCHHHHHHHHHHCCCCEEE
Confidence 42 111 1 1355677777 68987544
No 268
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=87.73 E-value=5 Score=31.25 Aligned_cols=107 Identities=11% Similarity=-0.016 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCC--------------------CC-----cHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTY--------------------CE-----STRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~--------------------~~-----~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
.++.++..++.+.+.+. ++.+.+... .. +.+...+.++.|+++|+..+.+.+.+
T Consensus 47 ~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~ 125 (290)
T 3tva_A 47 TRTREHAQAFRAKCDAA-GIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGF 125 (290)
T ss_dssp GCSHHHHHHHHHHHHHT-TCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred cCCHHHHHHHHHHHHHc-CCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 36677777776666555 666544321 00 12445667788889999999987654
Q ss_pred CcCCC-CCHHHHHHHHHHHHc---cCCCCEEEEeCCCCcccccCHHHHHHHHc---CCCEEEEeeC
Q psy9711 61 YFQKK-MTEDLIYEHFISVAD---NSPIPVIIYNNTFVTNIDISVDTLVKLAH---HENIRGVKDT 119 (198)
Q Consensus 61 y~~~~-~~~~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~~l~~~~l~~L~~---~p~i~giK~s 119 (198)
..... ...+.+.+.++.+++ ..++.+.+.|.+. +++.+.+|.+ .|++--.=|.
T Consensus 126 ~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~------~~~~~~~l~~~~~~~~~g~~~D~ 185 (290)
T 3tva_A 126 VPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQE------SADHLLEFIEDVNRPNLGINFDP 185 (290)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCSS------CHHHHHHHHHHHCCTTEEEEECH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCCC------CHHHHHHHHHhcCCCCEEEEecc
Confidence 32111 013455666676665 3478888888752 5777777773 4776554443
No 269
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=87.70 E-value=0.87 Score=36.40 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCc--------HHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 4 SFKSTEEEKLKIISTLRQETKKTIIAGTYCES--------TRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~--------~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
+..|+.++|.++++.+.+. ..|+.-+|.-+ +.+-|++++..-++||+.|++-.
T Consensus 133 ti~l~~~~~~~lI~~a~~~--f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 133 TLPMTNKEKAAYIADFSDE--FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp SSCCCHHHHHHHHHHHTTT--SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred cccCCHHHHHHHHHHHHhh--cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 3578999999999977665 77777666543 47889999999999999999963
No 270
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=87.69 E-value=3.4 Score=31.78 Aligned_cols=81 Identities=17% Similarity=0.024 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH-HHHHHHHHcc---CCCCEEEEeCCCCcccccCHHHHHHHHc-C-
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI-YEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKLAH-H- 110 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i-~~y~~~i~~~---~~~pi~lYn~P~~tg~~l~~~~l~~L~~-~- 110 (198)
+...+.++.|+++|++.+.+.|....... .+.+ .+.++.+++. .++.+.+-|.+......-+++.+.+|.+ +
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~--~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v~ 162 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLNDGTIV--PPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAG 162 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSBCC--CHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCchhH--HHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHhC
Confidence 45567778889999999988654332222 5666 7777777654 4788888887522223346777777773 3
Q ss_pred CCEEEEeeC
Q psy9711 111 ENIRGVKDT 119 (198)
Q Consensus 111 p~i~giK~s 119 (198)
||+--.=|.
T Consensus 163 ~~~g~~~D~ 171 (272)
T 2q02_A 163 SPFKVLLDT 171 (272)
T ss_dssp CCCEEEEEH
T ss_pred cCeEEEEEc
Confidence 665444343
No 271
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=87.67 E-value=0.66 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.092 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhchh
Q psy9711 168 PICELYDLAKAGKWEEAMKLQHRLVKPD 195 (198)
Q Consensus 168 ~~~~l~~~~~~gd~~~A~~l~~~~~~l~ 195 (198)
+=.+||-++.+||++.++.|-.++..++
T Consensus 13 iEQqiyvA~seGd~etv~~Le~QL~~lR 40 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKAKLKGIR 40 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 4467899999999999999998886553
No 272
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=87.61 E-value=4.2 Score=33.79 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
+.++.+++..++||++ |+ .+ .+.++.+.++|+|++.+..
T Consensus 219 ~~i~~lr~~~~~PvivK~v--~~----~e~a~~a~~~Gad~I~vs~ 258 (368)
T 2nli_A 219 RDIEEIAGHSGLPVFVKGI--QH----PEDADMAIKRGASGIWVSN 258 (368)
T ss_dssp HHHHHHHHHSSSCEEEEEE--CS----HHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHcCCCEEEEcC--CC----HHHHHHHHHcCCCEEEEcC
Confidence 3466666666899988 55 22 4567889999999999965
No 273
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=87.60 E-value=11 Score=31.08 Aligned_cols=151 Identities=13% Similarity=0.083 Sum_probs=86.3
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCC----CEEEEcCCCCcCCCCC-----------------HHHHHHHHHHH---
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGA----NAALILCPYYFQKKMT-----------------EDLIYEHFISV--- 78 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Ga----d~v~~~~P~y~~~~~~-----------------~~~i~~y~~~i--- 78 (198)
|.-||+| ++-.+.+.+++.|+..+++|. +.+.++--|++||.-+ -++=+...+.+
T Consensus 50 rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~KPRTs~g~kGL~nDP~ld~s~~i~~GL~~~R~ll~~ 129 (346)
T 3tqk_A 50 RVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEKPRTTIGWKGFINDPDLDNSYNINKGLRLARNLLSD 129 (346)
T ss_dssp SEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSSCSCCCTTTCTTSSSCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccCCCCCcCccccccCCCCCCCccHHHHHHHHHHHHHH
Confidence 6778999 888899999999999998873 5667777777777412 03444554443
Q ss_pred HccCCCCEEEE--eC--CCC----------cccccCHHHHHHHH-cCCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEe
Q psy9711 79 ADNSPIPVIIY--NN--TFV----------TNIDISVDTLVKLA-HHENIRGVKDT---DNIKLANMANQTKDLNFSVFA 140 (198)
Q Consensus 79 ~~~~~~pi~lY--n~--P~~----------tg~~l~~~~l~~L~-~~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~ 140 (198)
.+.+++|++-= |. |.. .-.+..-.+..+++ ....=||+|.. ++.....-+.....+.--+..
T Consensus 130 ~~e~GLpiatE~ld~~~~qyv~dlvs~~aIGARt~enq~hre~asg~s~PVg~Kngt~gti~~ai~Ai~aa~~pH~Fl~~ 209 (346)
T 3tqk_A 130 LTNMGLPCATEFLDVITPQYFAELITWGAIGARTVESQVHRELASGLSASIGFKNATNGDVQVAVDAVKSATYPHHFLST 209 (346)
T ss_dssp HHHTTCCEEEECCSSSGGGGTGGGCSEEEECGGGTTCHHHHHHHTTCSSEEEEECCTTCCSHHHHHHHHHHTSCCEEEEE
T ss_pred HHhcCCCEEEEecCcCCHHHHHHHhheeeeCcccccCHHHHHHhcCCCCceEEeCCCCCchHHHhhHHHHHhCCceEEee
Confidence 25678999732 11 111 01123335667887 68888999998 554433333233344432333
Q ss_pred cChhhHH----------HHhhcCCCeEEecccccchHHHHHHHHHHHc
Q psy9711 141 GSAGYLL----------SGLLVGCAGGINALSAVLGGPICELYDLAKA 178 (198)
Q Consensus 141 G~d~~~~----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~~~ 178 (198)
+.++... .....|+. ...|+-++-+.+..+.+.+
T Consensus 210 ~~~G~~aiv~T~GN~~~HvILRGg~----~gpNY~~~~v~~a~~~l~k 253 (346)
T 3tqk_A 210 TKSGSTAIFATKGNQNGHVILRGGA----SGPNFSKEHVDDCIAKLKK 253 (346)
T ss_dssp CTTSCEEEEECCCCSCEEEEECCCT----TCCCCSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCEEEEecCCC----CCCCCCHHHHHHHHHHHHh
Confidence 3222111 11233432 2367777776666655543
No 274
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=87.58 E-value=0.38 Score=37.48 Aligned_cols=47 Identities=21% Similarity=0.077 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcC
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQ 63 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~ 63 (198)
.++++.+.+..++||+++-+-.+.++ ++.+.+.|||++++....+..
T Consensus 68 ~~~i~~i~~~~~ipvi~~Ggi~~~~~----~~~~l~~Gad~V~ig~~~l~d 114 (247)
T 3tdn_A 68 TEMIRFVRPLTTLPIIASGGAGKMEH----FLEAFLRGADKVSINTAAVEN 114 (247)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHH----HHHHHHTTCSEECCSHHHHHC
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHH----HHHHHHcCCCeeehhhHHhhC
Confidence 35666666655999999766655544 444456799999998766543
No 275
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=87.40 E-value=6.6 Score=32.91 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=65.0
Q ss_pred CeEEE--eCCCC-cHHHHHHHHHHHHhcCCCEEEEc--------CCC---CcCCC-------------CCHHHHHHHHHH
Q psy9711 25 KTIIA--GTYCE-STRATIDLTQKAAKAGANAALIL--------CPY---YFQKK-------------MTEDLIYEHFIS 77 (198)
Q Consensus 25 ~pvi~--gv~~~-~~~~~i~~a~~a~~~Gad~v~~~--------~P~---y~~~~-------------~~~~~i~~y~~~ 77 (198)
+-||+ |+.++ |.+.+.++++.|+++|||+|=.. .|+ |..++ ....+-.....+
T Consensus 29 ~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~ 108 (385)
T 1vli_A 29 VFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLD 108 (385)
T ss_dssp CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHH
T ss_pred cEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHH
Confidence 55788 44343 68999999999999999998764 343 22110 012334455666
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC-----CHHHHHHHHhhcCCCCeEEEecCh
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-----DNIKLANMANQTKDLNFSVFAGSA 143 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s-----d~~~~~~~~~~~~~~~~~v~~G~d 143 (198)
.|+..+++++- ..++.+.+..|.++ ++-.+|-. |...+..+- ..+..+-+-+|..
T Consensus 109 ~~~~~Gi~~~s--------tpfD~~svd~l~~~-~vd~~KIgS~~~~N~pLL~~va--~~gKPViLStGma 168 (385)
T 1vli_A 109 YCREKQVIFLS--------TVCDEGSADLLQST-SPSAFKIASYEINHLPLLKYVA--RLNRPMIFSTAGA 168 (385)
T ss_dssp HHHHTTCEEEC--------BCCSHHHHHHHHTT-CCSCEEECGGGTTCHHHHHHHH--TTCSCEEEECTTC
T ss_pred HHHHcCCcEEE--------ccCCHHHHHHHHhc-CCCEEEECcccccCHHHHHHHH--hcCCeEEEECCCC
Confidence 77777777762 13556666666543 45667776 445555443 2455666667754
No 276
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=87.33 E-value=2.6 Score=33.87 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC--HHHHHHHHHHHHccCCCCEEE
Q psy9711 34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMT--EDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~--~~~i~~y~~~i~~~~~~pi~l 88 (198)
...++..+.++.+.+.|.|++++. .. ..| ++.+.+..+.|-+.+++|+++
T Consensus 50 ~~~~~~~~~~~~~~~sGtDai~VG--S~---~vt~~~~~~~~~v~~ik~~~~lPvil 101 (286)
T 3vk5_A 50 VPVTEAVEKAAELTRLGFAAVLLA--ST---DYESFESHMEPYVAAVKAATPLPVVL 101 (286)
T ss_dssp SCHHHHHHHHHHHHHTTCSCEEEE--CS---CCSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCcHHHHHHHHHHHhcCCCEEEEc--cC---CCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 356788889999999999999998 22 135 788999999999889999999
No 277
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=87.32 E-value=4 Score=31.56 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..+++..+..+.+...+..+...+.++|++++.|.. .. . ..+ .++.+ ...++|+++
T Consensus 16 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~-~--~~~---~~~~~-~~~~iPvV~ 87 (283)
T 2ioy_A 16 FVTLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVD-SD-A--VVT---AIKEA-NSKNIPVIT 87 (283)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS-TT-T--THH---HHHHH-HHTTCCEEE
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCc-hh-h--hHH---HHHHH-HHCCCeEEE
Confidence 445555555544 6777666556677777788888888999999987542 11 1 122 23343 346899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
.|.+
T Consensus 88 ~~~~ 91 (283)
T 2ioy_A 88 IDRS 91 (283)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 9864
No 278
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=87.31 E-value=5.2 Score=34.58 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcC-CCCc-----C--CCCCHHHHHHHHHHHHc
Q psy9711 11 EKLKIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALILC-PYYF-----Q--KKMTEDLIYEHFISVAD 80 (198)
Q Consensus 11 Er~~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~y~-----~--~~~~~~~i~~y~~~i~~ 80 (198)
.-.++++.+.+.. ++||++| +. +.+.++.+.++|+|++.+.. |-.. . ....+..-.....++++
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~------t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~ 355 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVV------TAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYAR 355 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEEC------SHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHhCCCCceEecccc------hHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHh
Confidence 3457788888888 8999985 52 24568888999999998842 2211 0 00114556677888888
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV 116 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi 116 (198)
..++||+. +|---+++.+.+.... -..+++
T Consensus 356 ~~~ipVia------~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 356 RFGVPIIA------DGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp GGTCCEEE------ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred hCCCCEEE------ECCCCCHHHHHHHHHcCCCeeeE
Confidence 88999886 3333355555555443 344444
No 279
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=87.20 E-value=0.8 Score=37.61 Aligned_cols=85 Identities=12% Similarity=0.210 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 14 KIISTLRQETKKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
++++.+.+..++||+ ++.|+-.+.+-+... .++|+|++++..-.+-..+ +....+-|....+. ||
T Consensus 230 ell~~i~~~~~IPVV~VAeGGI~Tpeda~~~---l~~GaDgV~VGsaI~~a~d--P~~aar~l~~ai~~-------~~-- 295 (330)
T 2yzr_A 230 EVLLEVKKLGRLPVVNFAAGGVATPADAALM---MQLGSDGVFVGSGIFKSEN--PLERARAIVEATYN-------YD-- 295 (330)
T ss_dssp HHHHHHHHHTSCSSEEEECSCCCSHHHHHHH---HHTTCSCEEESHHHHTSSC--HHHHHHHHHHHHHT-------TT--
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCHHHHHHH---HHcCcCEEeeHHHHhcCCC--HHHHHHHHHHHHHh-------cC--
Confidence 666666665589987 688888654444333 3459999999988876665 77777777666542 22
Q ss_pred CCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711 93 FVTNIDISVDTLVKLAH-H-ENIRGVKDT 119 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~-~-p~i~giK~s 119 (198)
.|+.+.++.+ + ...+|+-.+
T Consensus 296 -------~~~~~~~~s~~~~~~m~g~~~~ 317 (330)
T 2yzr_A 296 -------KPDIVAEVSKNLGEAMKGIDIT 317 (330)
T ss_dssp -------CHHHHHHHHTTCCCCCCC----
T ss_pred -------CHHHHHHHHhcccccCcCcccc
Confidence 4678888884 5 356666544
No 280
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=87.17 E-value=4.4 Score=30.89 Aligned_cols=73 Identities=8% Similarity=0.053 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhc---CCeEEEeC--CCCcHHHHHHHHHHHHhcC-CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 12 KLKIISTLRQET---KKTIIAGT--YCESTRATIDLTQKAAKAG-ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv--~~~~~~~~i~~a~~a~~~G-ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
..++++-+.+++ +..++... +..+.+...+..+.+.+.+ +|++++.+.... . .+ ..++.+ ...++|
T Consensus 15 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~-~---~~---~~~~~~-~~~~ip 86 (276)
T 3ksm_A 15 WRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAE-D---LT---PSVAQY-RARNIP 86 (276)
T ss_dssp HHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTT-T---TH---HHHHHH-HHTTCC
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHH-H---HH---HHHHHH-HHCCCc
Confidence 344555555554 77776655 4567788888999999999 999999865321 1 22 233444 346999
Q ss_pred EEEEeCC
Q psy9711 86 VIIYNNT 92 (198)
Q Consensus 86 i~lYn~P 92 (198)
++++|.+
T Consensus 87 vV~~~~~ 93 (276)
T 3ksm_A 87 VLVVDSD 93 (276)
T ss_dssp EEEESSC
T ss_pred EEEEecC
Confidence 9999864
No 281
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=87.14 E-value=3.7 Score=34.19 Aligned_cols=90 Identities=21% Similarity=0.141 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHH
Q psy9711 9 EEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVA 79 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~ 79 (198)
.++..+.++.+.+.. ++||++|... +.+.++.+.++|||++.+. -|-....+ ..+-..+.-..+.+
T Consensus 133 ~~~~~~~I~~ik~~~p~v~Vi~G~v~-----t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~v~~~~ 207 (366)
T 4fo4_A 133 SEGVLQRIRETRAAYPHLEIIGGNVA-----TAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVA 207 (366)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEEEEC-----SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCceEeeeeC-----CHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHHHHHHH
Confidence 345667777787777 8899887332 2456777888999999983 12111000 01333444445555
Q ss_pred ccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 80 DNSPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 80 ~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+.+++||+- .|---++..+.+...
T Consensus 208 ~~~~iPVIA------~GGI~~~~di~kala 231 (366)
T 4fo4_A 208 NEYGIPVIA------DGGIRFSGDISKAIA 231 (366)
T ss_dssp GGGTCCEEE------ESCCCSHHHHHHHHH
T ss_pred hhcCCeEEE------eCCCCCHHHHHHHHH
Confidence 667899886 333335555555543
No 282
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=87.11 E-value=4 Score=32.07 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=48.3
Q ss_pred HHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
++++-+.+++ +..++...+..+.....+..+.+.+.++|++++.+..... +...++.+. ..++|+++++
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~-~~~iPvV~~~ 90 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV-------LSNVVKEAK-QEGIKVLAYD 90 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS-------CHHHHHHHH-TTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh-------hHHHHHHHH-HCCCeEEEEC
Confidence 3444444444 7777666666778888889999999999999998764221 123444443 4689999998
Q ss_pred CC
Q psy9711 91 NT 92 (198)
Q Consensus 91 ~P 92 (198)
.+
T Consensus 91 ~~ 92 (313)
T 3m9w_A 91 RM 92 (313)
T ss_dssp SC
T ss_pred Cc
Confidence 74
No 283
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=87.09 E-value=2.7 Score=36.58 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCeEEE-eCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 14 KIISTLRQETKKTIIA-GTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~-gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
+.++.+++..++||++ |+.+ .+.++.+.++|+|++.+..
T Consensus 333 ~~i~~lr~~~~~PvivKgv~~------~e~A~~a~~aGad~I~vs~ 372 (511)
T 1kbi_A 333 KDIEELKKKTKLPIVIKGVQR------TEDVIKAAEIGVSGVVLSN 372 (511)
T ss_dssp HHHHHHHHHCSSCEEEEEECS------HHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHhCCcEEEEeCCC------HHHHHHHHHcCCCEEEEcC
Confidence 3467776666899988 4553 4568889999999999964
No 284
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=87.00 E-value=9.5 Score=32.67 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC-----------CcCCCCCHHHHHHHHHH
Q psy9711 10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY-----------YFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~-----------y~~~~~~~~~i~~y~~~ 77 (198)
....+.++.+.+.. ++||++|-+. +.++ ++.+.++|+|++.+..-. +..| +-..+.....
T Consensus 263 ~~~~e~i~~i~~~~p~~pvi~g~~~-t~e~----a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p---~~~~l~~v~~ 334 (494)
T 1vrd_A 263 RRVIETLEMIKADYPDLPVVAGNVA-TPEG----TEALIKAGADAVKVGVGPGSICTTRVVAGVGVP---QLTAVMECSE 334 (494)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEEC-SHHH----HHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCceEEeCCcC-CHHH----HHHHHHcCCCEEEEcCCCCccccccccCCCCcc---HHHHHHHHHH
Confidence 45567788888877 8999887432 3444 477788999999984311 1112 4444455555
Q ss_pred HHccCCCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 78 i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
.+...++||+. +|---+++.+.+....
T Consensus 335 ~~~~~~ipvia------~GGI~~~~di~kala~ 361 (494)
T 1vrd_A 335 VARKYDVPIIA------DGGIRYSGDIVKALAA 361 (494)
T ss_dssp HHHTTTCCEEE------ESCCCSHHHHHHHHHT
T ss_pred HHhhcCCCEEE------ECCcCCHHHHHHHHHc
Confidence 55556888876 3444466666665544
No 285
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=86.97 E-value=2.2 Score=35.36 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++ .+--|.- +. + .+.++.|.+++++|
T Consensus 180 ~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~--~iEqP~~--~~--d---~~~~~~l~~~~~iP 250 (372)
T 3tj4_A 180 PNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIY--WFEEPLW--YD--D---VTSHARLARNTSIP 250 (372)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEE--EEESCSC--TT--C---HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCC--EEECCCC--ch--h---HHHHHHHHhhcCCC
Confidence 455566677777766 66776644 444677777777777766543 3344531 11 1 35566777777888
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
|+.=. .-.+++.+.++.+ ...++-+|-+
T Consensus 251 Ia~dE------~~~~~~~~~~~i~~~~~d~v~~k~~ 280 (372)
T 3tj4_A 251 IALGE------QLYTVDAFRSFIDAGAVAYVQPDVT 280 (372)
T ss_dssp EEECT------TCCSHHHHHHHHHTTCCSEECCCTT
T ss_pred EEeCC------CccCHHHHHHHHHcCCCCEEEeCcc
Confidence 77632 2345677777763 4577778777
No 286
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=86.90 E-value=4.2 Score=31.62 Aligned_cols=80 Identities=10% Similarity=0.038 Sum_probs=55.7
Q ss_pred EEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc--ccCHH
Q psy9711 27 IIAGTYC-ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--DISVD 102 (198)
Q Consensus 27 vi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~--~l~~~ 102 (198)
|.+-+.+ .+.++.++.++.+.+.|+|.+=+---++...+ .+.+.+-.+.+-+.+ ++|+++-.-+...|- ..+.+
T Consensus 6 Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~--~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~ 83 (238)
T 1sfl_A 6 VVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVT--VDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTND 83 (238)
T ss_dssp EEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCC--HHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHH
T ss_pred EEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCC--HHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHH
Confidence 5556677 78899999999999999999999988876655 777887777777766 799988776554443 46666
Q ss_pred HHHHHH
Q psy9711 103 TLVKLA 108 (198)
Q Consensus 103 ~l~~L~ 108 (198)
...+|.
T Consensus 84 ~~~~ll 89 (238)
T 1sfl_A 84 SYLNLI 89 (238)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 287
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=86.85 E-value=2.2 Score=35.68 Aligned_cols=97 Identities=6% Similarity=0.038 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++++=+ ++-+.+++++.++..++.|++.+ --|. ++ ++ .+.++.|.+++++
T Consensus 201 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~----~d-~~~~~~l~~~~~i 271 (390)
T 3ugv_A 201 DPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWI--EEPV--VY----DN-FDGYAQLRHDLKT 271 (390)
T ss_dssp SHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEE--ECCS--CT----TC-HHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Cc----cc-HHHHHHHHHhcCC
Confidence 3456667788888776 78887754 45578899999999998887643 3443 11 11 3456788888899
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
||..=. .-.++..+.++.+ ...++-+|-+
T Consensus 272 PIa~dE------~~~~~~~~~~~i~~~a~d~v~ik~~ 302 (390)
T 3ugv_A 272 PLMIGE------NFYGPREMHQALQAGACDLVMPDFM 302 (390)
T ss_dssp CEEECT------TCCSHHHHHHHHHTTCCSEECCBHH
T ss_pred CEEeCC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 998733 2356778888874 4678888877
No 288
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Probab=86.85 E-value=5.7 Score=32.98 Aligned_cols=118 Identities=11% Similarity=0.172 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++++=+ ++-+.+++++.++..++.|+.. +--|. ++ ++ .+-++.+.+++++|
T Consensus 177 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~--iEqP~--~~----~d-~~~~~~l~~~~~ip 247 (382)
T 3dgb_A 177 VDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGIDL--IEQPI--SR----NN-RAGMVRLNASSPAP 247 (382)
T ss_dssp HHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTCCC--EECCB--CT----TC-HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCcCe--eeCCC--Cc----cC-HHHHHHHHHhCCCC
Confidence 455566778887776 68888754 5567899999999999987653 33453 12 11 35567788889999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|..=. ...+...+.++.+ .-+++-+|-+ .+....++......-++.+..|
T Consensus 248 Ia~dE------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~A~~~gi~~~~~ 302 (382)
T 3dgb_A 248 IMADE------SIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAIAEAAGIGLYGG 302 (382)
T ss_dssp EEEST------TCSSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHHHHHHTCEEEEC
T ss_pred EEeCC------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCeEeec
Confidence 98733 2346778888874 5689999987 4555444432111234555544
No 289
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=86.79 E-value=3.7 Score=31.90 Aligned_cols=75 Identities=13% Similarity=0.009 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhc---CCeEEEeCCCC--cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 9 EEEKLKIISTLRQET---KKTIIAGTYCE--STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~---~~pvi~gv~~~--~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
..=..++++-+.+++ +..++...... +.....+..+.+.+.++|++++.+....... ...+.+. .+
T Consensus 17 ~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~-------~~~~~~~--~~ 87 (304)
T 3o1i_D 17 DSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYE-------HNLKSWV--GN 87 (304)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSST-------TTHHHHT--TT
T ss_pred CcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHH-------HHHHHHc--CC
Confidence 333455555555555 77776666555 7788888999999999999999865433211 2234443 68
Q ss_pred CCEEEEeCC
Q psy9711 84 IPVIIYNNT 92 (198)
Q Consensus 84 ~pi~lYn~P 92 (198)
+|+++.+.+
T Consensus 88 iPvV~~~~~ 96 (304)
T 3o1i_D 88 TPVFATVNQ 96 (304)
T ss_dssp SCEEECSSC
T ss_pred CCEEEecCC
Confidence 999999653
No 290
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=86.77 E-value=7.1 Score=30.34 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCC--CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYC--ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~--~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
.=..++++-+.+++ +..++..... .+.+...+..+.+.+.++|++++.+..... -+ ..++.+. ..++
T Consensus 16 ~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~----~~---~~~~~~~-~~gi 87 (297)
T 3rot_A 16 PYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA----FS---KSLQRAN-KLNI 87 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST----TH---HHHHHHH-HHTC
T ss_pred chHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH----HH---HHHHHHH-HCCC
Confidence 33445555555555 7777665544 478888899999999999999987653211 12 2334433 3589
Q ss_pred CEEEEeCCC
Q psy9711 85 PVIIYNNTF 93 (198)
Q Consensus 85 pi~lYn~P~ 93 (198)
|++.+|.+.
T Consensus 88 PvV~~~~~~ 96 (297)
T 3rot_A 88 PVIAVDTRP 96 (297)
T ss_dssp CEEEESCCC
T ss_pred CEEEEcCCC
Confidence 999998754
No 291
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=86.69 E-value=1.3 Score=34.55 Aligned_cols=57 Identities=25% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
++++.+.+..++||+++-|-.+.+++.++. ++|||++++..-.+..+. +.+++.++.
T Consensus 190 ~~i~~l~~~~~ipvia~GGI~~~ed~~~~~----~~Gadgv~vgsal~~~~~-~~~~~~~~l 246 (266)
T 2w6r_A 190 EMIRFVRPLTTLPIIASGGAGKMEHFLEAF----LAGADAALAASVFHFREI-DMRELKEYL 246 (266)
T ss_dssp HHHHHHGGGCCSCEEEESCCCSHHHHHHHH----HHTCSEEEESTTTC--------------
T ss_pred HHHHHHHHHcCCCEEEeCCCCCHHHHHHHH----HcCCHHHHccHHHHcCCC-CHHHHHHHH
Confidence 455555554589999987766667666654 369999999988876652 245554443
No 292
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=86.69 E-value=5 Score=35.93 Aligned_cols=110 Identities=9% Similarity=0.101 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHh----c--CCeEEEeCC-------CCcHHHHHHHHHHHHhcCCCEEEEcC---------CCCcCCC
Q psy9711 8 TEEEKLKIISTLRQE----T--KKTIIAGTY-------CESTRATIDLTQKAAKAGANAALILC---------PYYFQKK 65 (198)
Q Consensus 8 t~~Er~~l~~~~~~~----~--~~pvi~gv~-------~~~~~~~i~~a~~a~~~Gad~v~~~~---------P~y~~~~ 65 (198)
|.+-|.+++..++++ + +.||.+=++ +.+.++++++++.+++ |+|.+-+.. |.+..+
T Consensus 202 s~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~- 279 (690)
T 3k30_A 202 SLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPE- 279 (690)
T ss_dssp SHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCT-
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCc-
Confidence 456666555544444 4 567777553 3347899999999998 899887753 223222
Q ss_pred CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 66 ~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
....++.+.|-+.+++||+. .|.--+++...++.+.. ..+++=-. |+....++.
T Consensus 280 ---~~~~~~~~~i~~~~~~pvi~------~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~~ 338 (690)
T 3k30_A 280 ---GRQEEFVAGLKKLTTKPVVG------VGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIR 338 (690)
T ss_dssp ---TTTHHHHTTSGGGCSSCEEE------CSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred ---cccHHHHHHHHHHcCCeEEE------eCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHHH
Confidence 11234556666777999886 34445688887777543 45555443 666665554
No 293
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=86.66 E-value=8.9 Score=29.20 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHH-----------------------HHHHHhcCCCEEEEcCCCCcC
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDL-----------------------TQKAAKAGANAALILCPYYFQ 63 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~-----------------------a~~a~~~Gad~v~~~~P~y~~ 63 (198)
+|-.++++.+.+.. ++.++..-+...+....+. +..+.++|||++++. ...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~--~ser 93 (219)
T 2h6r_A 16 NRGLEIAKIAEKVSEESGITIGVAPQFVDLRMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLIN--HSEK 93 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECCTTTHHHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEES--BTTB
T ss_pred HHHHHHHHHHHhcccccCCcEEEECCHHHHHHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEEC--Cccc
Confidence 56666666554322 4566555555555444331 677889999999993 2211
Q ss_pred CCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEEE------------eeC--C-HHHHHHH
Q psy9711 64 KKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRGV------------KDT--D-NIKLANM 127 (198)
Q Consensus 64 ~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~gi------------K~s--d-~~~~~~~ 127 (198)
. ...+++.++++.. ...++.+++-=.|. +...++.+. +.++|+ |.. | .....+.
T Consensus 94 ~-l~~~e~~~~~~~a-~~~Gl~~iv~v~~~--------~e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ 163 (219)
T 2h6r_A 94 R-MLLADIEAVINKC-KNLGLETIVCTNNI--------NTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRA 163 (219)
T ss_dssp C-CBHHHHHHHHHHH-HHHTCEEEEEESSS--------HHHHHHTTTCCSEEEECCCC--------------CSHHHHHH
T ss_pred c-CCHHHHHHHHHHH-HHCCCeEEEEeCCc--------hHHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHH
Confidence 1 1155666655554 44577555543332 123444433 345554 222 2 4455555
Q ss_pred HhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711 128 ANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSAVLGGPICELYDLA 176 (198)
Q Consensus 128 ~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n~~P~~~~~l~~~~ 176 (198)
+++. .++..+..|.. .........|+||++.|.+.+-++-..++.+.+
T Consensus 164 ir~~-~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l 215 (219)
T 2h6r_A 164 VKEI-NKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIREL 215 (219)
T ss_dssp HHHH-CTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHH
T ss_pred HHhc-cCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHH
Confidence 5433 33566665543 233335678999999998766554444444433
No 294
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=86.61 E-value=1.8 Score=33.48 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.++++.+.+..++||+++-|-.+.++..++. +.|+|++++..-.+..+- +.++..++.+
T Consensus 185 ~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~----~~Gadgv~vgsal~~~~~-~~~~~~~~l~ 243 (252)
T 1ka9_F 185 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAF----QAGAEAALAASVFHFGEI-PIPKLKRYLA 243 (252)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHH----HTTCSEEEESHHHHTTSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH----HCCCHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 4556666665589999976655555554433 579999999987776651 3777777643
No 295
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=86.57 E-value=7.5 Score=29.53 Aligned_cols=77 Identities=12% Similarity=0.185 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+..=..++++-+.+++ +..++......+.+...+..+...+.++|++++.+..... . ..++.+ ...++
T Consensus 13 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~----~----~~~~~~-~~~~i 83 (272)
T 3o74_A 13 ENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE----D----DSYREL-QDKGL 83 (272)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS----C----CHHHHH-HHTTC
T ss_pred cChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc----H----HHHHHH-HHcCC
Confidence 3334455666655555 7777766666678888888999999999999987654211 1 123333 34699
Q ss_pred CEEEEeCCC
Q psy9711 85 PVIIYNNTF 93 (198)
Q Consensus 85 pi~lYn~P~ 93 (198)
|+++.+.+.
T Consensus 84 PvV~~~~~~ 92 (272)
T 3o74_A 84 PVIAIDRRL 92 (272)
T ss_dssp CEEEESSCC
T ss_pred CEEEEccCC
Confidence 999998753
No 296
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=86.55 E-value=2.1 Score=33.08 Aligned_cols=135 Identities=16% Similarity=0.067 Sum_probs=76.1
Q ss_pred HHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
.+++.+.+.. ++|+-++.--++..+ .++.+.++|+|.+.+.. .. .+.+.+..+.+- ..++.+.+==+
T Consensus 52 ~~v~~ir~~~~~~~~~dvhLmv~~p~~---~i~~~~~aGad~itvH~---Ea----~~~~~~~i~~i~-~~G~k~gval~ 120 (228)
T 3ovp_A 52 PVVESLRKQLGQDPFFDMHMMVSKPEQ---WVKPMAVAGANQYTFHL---EA----TENPGALIKDIR-ENGMKVGLAIK 120 (228)
T ss_dssp HHHHHHHHHHCSSSCEEEEEECSCGGG---GHHHHHHHTCSEEEEEG---GG----CSCHHHHHHHHH-HTTCEEEEEEC
T ss_pred HHHHHHHHhhCCCCcEEEEEEeCCHHH---HHHHHHHcCCCEEEEcc---CC----chhHHHHHHHHH-HcCCCEEEEEc
Confidence 3556666652 677777655455554 45667789999998852 11 123444555553 34665666555
Q ss_pred CCCcccccCHHHHHHHHc----------CCCEEEEeeC--CHHHHHHHHhhcCCCCeEEEecCh-hhHHHHhhcCCCeEE
Q psy9711 92 TFVTNIDISVDTLVKLAH----------HENIRGVKDT--DNIKLANMANQTKDLNFSVFAGSA-GYLLSGLLVGCAGGI 158 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~----------~p~i~giK~s--d~~~~~~~~~~~~~~~~~v~~G~d-~~~~~~l~~G~~G~i 158 (198)
|. | +.+.+..+.+ .|.+-|-|.. .+.+++++.+...+-.+.|=.|-. +.......+|+++++
T Consensus 121 p~-t----~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~~~~~~aGAd~~V 195 (228)
T 3ovp_A 121 PG-T----SVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTVHKCAEAGANMIV 195 (228)
T ss_dssp TT-S----CGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTHHHHHHHTCCEEE
T ss_pred CC-C----CHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHHHHHHHcCCCEEE
Confidence 64 2 2334444442 3455555554 456666655321122344445544 356677889999999
Q ss_pred eccccc
Q psy9711 159 NALSAV 164 (198)
Q Consensus 159 s~~~n~ 164 (198)
.|.+-+
T Consensus 196 vGsaIf 201 (228)
T 3ovp_A 196 SGSAIM 201 (228)
T ss_dssp ESHHHH
T ss_pred EeHHHh
Confidence 996533
No 297
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=86.49 E-value=9 Score=29.44 Aligned_cols=75 Identities=7% Similarity=0.053 Sum_probs=50.1
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.++++-+.+++ +..++......+.+...+..+.+.+.++|++++.+.....++ ... +.++.+. ..++|+++.
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-~~~---~~~~~~~-~~~iPvV~~ 105 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQT-PNI---GYYLNLE-KNGIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCC-TTH---HHHHHHH-HTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccC-CcH---HHHHHHH-hcCCCEEEE
Confidence 34455444444 777777666677888888899999999999999875432111 022 3444443 469999999
Q ss_pred eCC
Q psy9711 90 NNT 92 (198)
Q Consensus 90 n~P 92 (198)
+.+
T Consensus 106 ~~~ 108 (298)
T 3tb6_A 106 NAS 108 (298)
T ss_dssp SSC
T ss_pred ecC
Confidence 864
No 298
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=86.47 E-value=7.9 Score=30.98 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEE
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAAL 55 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~ 55 (198)
+.++.+.+..++|++++..... .+.++.+.++|||++.
T Consensus 68 ~~i~~I~~~~~iPv~~k~r~g~----~~~~~~~~a~GAd~V~ 105 (305)
T 2nv1_A 68 TIVEEVMNAVSIPVMAKARIGH----IVEARVLEAMGVDYID 105 (305)
T ss_dssp HHHHHHHHHCSSCEEEEECTTC----HHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhCCCCEEecccccc----hHHHHHHHHCCCCEEE
Confidence 3444445545899987754322 4556677779999997
No 299
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=86.43 E-value=4.1 Score=31.78 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE-eCCCCccc--ccCHH---HHH
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY-NNTFVTNI--DISVD---TLV 105 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY-n~P~~tg~--~l~~~---~l~ 105 (198)
.+...++..++.+.+++.|.+.+..+.|. + ..+..+.+...++ .++++ -.++.||. .+++. .+.
T Consensus 125 ~d~~~~~~~~~~~~~~~~g~~~i~~~a~~----t--~~e~~~~~~~~~~----g~v~~~s~~G~tG~~~~~~~~~~~~i~ 194 (262)
T 1rd5_A 125 PDLPYVAAHSLWSEAKNNNLELVLLTTPA----I--PEDRMKEITKASE----GFVYLVSVNGVTGPRANVNPRVESLIQ 194 (262)
T ss_dssp TTCBTTTHHHHHHHHHHTTCEECEEECTT----S--CHHHHHHHHHHCC----SCEEEECSSCCBCTTSCBCTHHHHHHH
T ss_pred cCCChhhHHHHHHHHHHcCCceEEEECCC----C--CHHHHHHHHhcCC----CeEEEecCCCCCCCCcCCCchHHHHHH
Confidence 34455677788888888999988777764 1 3333333333222 23322 23444665 44443 556
Q ss_pred HHHc---CCCEEEEeeCCHHHHHHHH
Q psy9711 106 KLAH---HENIRGVKDTDNIKLANMA 128 (198)
Q Consensus 106 ~L~~---~p~i~giK~sd~~~~~~~~ 128 (198)
++.+ +|-++|-=-++.+.+.+++
T Consensus 195 ~v~~~~~~pI~vgGGI~~~e~~~~~~ 220 (262)
T 1rd5_A 195 EVKKVTNKPVAVGFGISKPEHVKQIA 220 (262)
T ss_dssp HHHHHCSSCEEEESCCCSHHHHHHHH
T ss_pred HHHhhcCCeEEEECCcCCHHHHHHHH
Confidence 6653 4544433332477777766
No 300
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=86.28 E-value=5.1 Score=31.38 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.++++-+.+++ +..+++.....+.+...+..+...+.++||+++.+... + .++ .++.+.+ ++|+++.
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~---~--~~~---~~~~l~~--~iPvV~i 100 (303)
T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED---F--DDD---MLAAVLE--GVPAVTI 100 (303)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT---C--CHH---HHHHHHT--TSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC---C--cHH---HHHHHhC--CCCEEEE
Confidence 34444444444 67777666666777778888889999999999987642 1 221 4555555 9999999
Q ss_pred eCCC
Q psy9711 90 NNTF 93 (198)
Q Consensus 90 n~P~ 93 (198)
+.+.
T Consensus 101 ~~~~ 104 (303)
T 3kke_A 101 NSRV 104 (303)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 8653
No 301
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=86.26 E-value=13 Score=30.83 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=90.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEE-eCCCCcHHH--HH--------------------HHHHHHHhcCCCEEEEcC
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIA-GTYCESTRA--TI--------------------DLTQKAAKAGANAALILC 58 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~-gv~~~~~~~--~i--------------------~~a~~a~~~Gad~v~~~~ 58 (198)
++...||.+|+.++++...+. ++..|= |....+..+ .+ +-++.|.++|++.+-+.-
T Consensus 17 ~~~~~~~~~~k~~ia~~L~~~-Gv~~IE~g~p~~~~~~~~~~~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~v~i~~ 95 (382)
T 2ztj_A 17 FEKANFSTQDKVEIAKALDEF-GIEYIEVTTPVASPQSRKDAEVLASLGLKAKVVTHIQCRLDAAKVAVETGVQGIDLLF 95 (382)
T ss_dssp STTCCCCHHHHHHHHHHHHHH-TCSEEEECCTTSCHHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEEEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHc-CcCEEEEcCCcCCHHHHHHHHHHHhcCCCcEEEEEcccChhhHHHHHHcCCCEEEEEe
Confidence 456789999999999998776 554432 322222211 11 225667788999877654
Q ss_pred CCC---cC-CCCCHHHHHHHHHHHHccC---C--CCEEEEeCCCCcccccCHHHHHHHH----cCCCEEEEeeC----CH
Q psy9711 59 PYY---FQ-KKMTEDLIYEHFISVADNS---P--IPVIIYNNTFVTNIDISVDTLVKLA----HHENIRGVKDT----DN 121 (198)
Q Consensus 59 P~y---~~-~~~~~~~i~~y~~~i~~~~---~--~pi~lYn~P~~tg~~l~~~~l~~L~----~~p~i~giK~s----d~ 121 (198)
+.. .. ...|.++.++-+++..+.. + +.+.++=. .....+++.+.+++ +....+.+||+ .+
T Consensus 96 ~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~e---d~~~~~~~~~~~~~~~~~~~a~~i~l~DT~G~~~P 172 (382)
T 2ztj_A 96 GTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAE---DTFRSEEQDLLAVYEAVAPYVDRVGLADTVGVATP 172 (382)
T ss_dssp CC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEET---TTTTSCHHHHHHHHHHHGGGCSEEEEEETTSCCCH
T ss_pred ccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEE---eCCCCCHHHHHHHHHHHHHhcCEEEecCCCCCCCH
Confidence 432 11 2234677666666665533 4 54444422 23344555555444 34789999999 66
Q ss_pred HHHHHHHh---hc--CCCCeEEEecChh-----hHHHHhhcCCC---eEEeccc----ccchHHHH
Q psy9711 122 IKLANMAN---QT--KDLNFSVFAGSAG-----YLLSGLLVGCA---GGINALS----AVLGGPIC 170 (198)
Q Consensus 122 ~~~~~~~~---~~--~~~~~~v~~G~d~-----~~~~~l~~G~~---G~is~~~----n~~P~~~~ 170 (198)
..+.++++ +. .+-.+.+=+=+|. ..+.++.+|++ +.++|++ |..-+.++
T Consensus 173 ~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv 238 (382)
T 2ztj_A 173 RQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGERNGITPLGGFL 238 (382)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccccccchhHHHHH
Confidence 66555442 22 2223444332221 34567888975 4455444 55555554
No 302
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=86.25 E-value=2.6 Score=34.08 Aligned_cols=157 Identities=12% Similarity=0.037 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--------CCCCCHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYF--------QKKMTEDLIYE 73 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--------~~~~~~~~i~~ 73 (198)
-.+|.+|....++.+.+.++.||++-. .+.+..++.+.++...++|++++-+---... +.=.++++..+
T Consensus 59 ~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~ 138 (295)
T 1xg4_A 59 GISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVD 138 (295)
T ss_dssp SCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHH
Confidence 358999999999999888888999965 3347899999999999999999998643211 10024788888
Q ss_pred HHHHHHccC-CCCEEEEeCCCCcccccC---HHHHHHHHcC--CCEEEE-eeC--CHHHHHHHHhhcCCCCe-EEEe-cC
Q psy9711 74 HFISVADNS-PIPVIIYNNTFVTNIDIS---VDTLVKLAHH--ENIRGV-KDT--DNIKLANMANQTKDLNF-SVFA-GS 142 (198)
Q Consensus 74 y~~~i~~~~-~~pi~lYn~P~~tg~~l~---~~~l~~L~~~--p~i~gi-K~s--d~~~~~~~~~~~~~~~~-~v~~-G~ 142 (198)
-.+...++. +-++++-= ||..... .+.+.|.... -..-+| =++ +.+.+.++.+...-|-+ .+.. |.
T Consensus 139 ~I~Aa~~a~~~~~~~i~a---Rtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~iP~~~N~~~~g~ 215 (295)
T 1xg4_A 139 RIRAAVDAKTDPDFVIMA---RTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGA 215 (295)
T ss_dssp HHHHHHHHCSSTTSEEEE---EECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHCSCBEEECCSSSS
T ss_pred HHHHHHHhccCCCcEEEE---ecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHcCCCEEEEecccCC
Confidence 888888776 45555532 3432211 2455554421 122222 222 55555555533322322 2222 22
Q ss_pred h-h-hHHHHhhcCCCeEEeccccc
Q psy9711 143 A-G-YLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 143 d-~-~~~~~l~~G~~G~is~~~n~ 164 (198)
. . ..-..-.+|++.++-+.+.+
T Consensus 216 ~p~~~~~eL~~~G~~~v~~~~~~~ 239 (295)
T 1xg4_A 216 TPLFTTDELRSAHVAMALYPLSAF 239 (295)
T ss_dssp SCCCCHHHHHHTTCSEEEESSHHH
T ss_pred CCCCCHHHHHHcCCCEEEEChHHH
Confidence 1 1 23344568999888777644
No 303
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=86.23 E-value=1.9 Score=33.33 Aligned_cols=83 Identities=14% Similarity=0.061 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGV 116 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~gi 116 (198)
.+.++.++.+++.|++.+.+....-.... ...-.+..+.+++.+++|+++ .|.--+++.+.++.+.. .-++
T Consensus 35 ~~~~~~a~~~~~~G~~~i~v~d~~~~~~~--~~~~~~~i~~i~~~~~ipvi~------~Ggi~~~~~~~~~l~~G-ad~V 105 (247)
T 3tdn_A 35 ILLRDWVVEVEKRGAGEILLTSIDRDGTK--SGYDTEMIRFVRPLTTLPIIA------SGGAGKMEHFLEAFLRG-ADKV 105 (247)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEETTTTTCS--SCCCHHHHHHHGGGCCSCEEE------ESCCCSHHHHHHHHHTT-CSEE
T ss_pred CCHHHHHHHHHHcCCCEEEEEecCcccCC--CcccHHHHHHHHHhCCCCEEE------eCCCCCHHHHHHHHHcC-CCee
Confidence 46789999999999999988743211100 111246778999999999987 33344778888877543 4444
Q ss_pred eeC-----CHHHHHHHH
Q psy9711 117 KDT-----DNIKLANMA 128 (198)
Q Consensus 117 K~s-----d~~~~~~~~ 128 (198)
=.. |+..+.++.
T Consensus 106 ~ig~~~l~dp~~~~~~~ 122 (247)
T 3tdn_A 106 SINTAAVENPSLITQIA 122 (247)
T ss_dssp CCSHHHHHCTHHHHHHH
T ss_pred ehhhHHhhChHHHHHHH
Confidence 433 444444444
No 304
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.90A {Pyrococcus horikoshii} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Probab=86.15 E-value=1.5 Score=37.41 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=97.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+..+||......+++.+ + +--.+.+++. .++.+++++.++++|+.++|+-+ .....+ .-..+.++.+
T Consensus 193 ~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiTa~-~~em~~Ra~~a~e~G~~~~mvd~-~~~G~~-a~~~l~~~~r 269 (430)
T 2d69_A 193 SFPFNRFEERVRKLYRVRDRVEAETGETKEYLINITGP-VNIMEKRAEMVANEGGQYVMIDI-VVAGWS-ALQYMREVTE 269 (430)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEECBCCSS-HHHHHHHHHHHHHHTCCEEEEEH-HHHCHH-HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCccEEEeecCCC-HHHHHHHHHHHHHcCCCeEEEEe-eccChH-HHHHHHHHhh
Confidence 345667789987555554444 3 3445688876 99999999999999999999863 222221 1333444443
Q ss_pred HHHccCCCCEEEEeCCC-----CcccccCHHHHHH---HH--c---CCCEEEEeeC-CHHHHHH---HHhh---cCCCCe
Q psy9711 77 SVADNSPIPVIIYNNTF-----VTNIDISVDTLVK---LA--H---HENIRGVKDT-DNIKLAN---MANQ---TKDLNF 136 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~-----~tg~~l~~~~l~~---L~--~---~p~i~giK~s-d~~~~~~---~~~~---~~~~~~ 136 (198)
+ .++|+..+-.-. .....++..++.+ |+ + .|+++| |.. +...... ...+ ...+-+
T Consensus 270 ~----~~l~lh~HrA~hga~~r~~~~Gi~~~Vl~Kl~RLaGaD~ih~gt~~G-Kleg~~~~~~~~~~~~~q~w~~~k~~~ 344 (430)
T 2d69_A 270 D----LGLAIHAHRAMHAAFTRNPRHGITMLALAKAARMIGVDQIHTGTAVG-KMAGNYEEIKRINDFLLSKWEHIRPVF 344 (430)
T ss_dssp H----HTCEEEEECTTTHHHHSCTTSEECHHHHHHHHHHHTCSEEECCCCCS-SSCCCHHHHHHHHHHHHSCCTTCCCCE
T ss_pred c----cCcEEEeccCCccccccCCCCCCcHHHHHHHHHHhCCCcccccCcCC-cccCCHHHHHHHHHHHhCccccCCCCe
Confidence 3 478877764310 0112355655554 44 2 266644 777 5543333 2222 124568
Q ss_pred EEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711 137 SVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK 180 (198)
Q Consensus 137 ~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd 180 (198)
.|.+|.-+ .+...+ ..|-|-++...+.++ | ..+++-++++++|.
T Consensus 345 PV~SGGi~~~~~p~l~~~~G~D~vl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~G~ 400 (430)
T 2d69_A 345 PVASGGLHPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIEGV 400 (430)
T ss_dssp EEEESSCCGGGHHHHHHHHCSCCEEECHHHHHTCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred EeecCCcchhhHHHHHHHhCCcEEEEeCccccCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 88887543 232322 357666554444332 1 46677777777775
No 305
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=86.07 E-value=2 Score=34.08 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.++++.+++..++|||++-|=.+.++ +..+.++|+|+|++..-..-..+ +..+.+.|..-.+
T Consensus 176 ~~lI~~I~e~~~vPVI~eGGI~TPsD----Aa~AmeLGAdgVlVgSAI~~a~d--P~~ma~af~~Av~ 237 (265)
T 1wv2_A 176 PYNLRIILEEAKVPVLVDAGVGTASD----AAIAMELGCEAVLMNTAIAHAKD--PVMMAEAMKHAIV 237 (265)
T ss_dssp HHHHHHHHHHCSSCBEEESCCCSHHH----HHHHHHHTCSEEEESHHHHTSSS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHH----HHHHHHcCCCEEEEChHHhCCCC--HHHHHHHHHHHHH
Confidence 46778888756999999666545544 45677889999999887764444 8888887776443
No 306
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=86.05 E-value=11 Score=29.60 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=79.0
Q ss_pred CCeEEEeCCC-CcHHHHHHHHHHHHhcCCCEEEEc--CCCC-c-CCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccc
Q psy9711 24 KKTIIAGTYC-ESTRATIDLTQKAAKAGANAALIL--CPYY-F-QKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNID 98 (198)
Q Consensus 24 ~~pvi~gv~~-~~~~~~i~~a~~a~~~Gad~v~~~--~P~y-~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~ 98 (198)
+.+++.+... .+.+++++.++.++++|.+.++.+ .|-. . .+. .+++.+..++... -++.++.+..|.
T Consensus 65 ~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e--~~~~~~~a~~~~~-~g~~vi~~~~~~----- 136 (264)
T 1xm3_A 65 KYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPD--PVETLKASEQLLE-EGFIVLPYTSDD----- 136 (264)
T ss_dssp GSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBC--HHHHHHHHHHHHH-TTCCEEEEECSC-----
T ss_pred CCeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEeecCCCcccccc--hHHHHHHHHHHHC-CCeEEEEEcCCC-----
Confidence 6777777654 778899999999999866555321 2211 1 111 4455555444321 267777666552
Q ss_pred cCHHHHHHHHcC--CCEE------EEeeC--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccc-
Q psy9711 99 ISVDTLVKLAHH--ENIR------GVKDT--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVL- 165 (198)
Q Consensus 99 l~~~~l~~L~~~--p~i~------giK~s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~- 165 (198)
++...++.+. .-|+ |.... +...+.++. +..+-.+.+-.|-. +.....+..|++|++.+.+.+-
T Consensus 137 --~~~a~~~~~~gad~v~~~~~~~Gt~~~~~~~~~l~~i~-~~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a 213 (264)
T 1xm3_A 137 --VVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFII-EQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA 213 (264)
T ss_dssp --HHHHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHH-HHCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred --HHHHHHHHHhCCCEEEECCcccCCCCCCCCHHHHHHHH-hcCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 3455555532 2221 22222 444455444 33333344444553 4566778999999998886441
Q ss_pred --h-HHHHHHHHHHHc
Q psy9711 166 --G-GPICELYDLAKA 178 (198)
Q Consensus 166 --P-~~~~~l~~~~~~ 178 (198)
| +...++.+++++
T Consensus 214 ~dp~~~~~~l~~~v~~ 229 (264)
T 1xm3_A 214 DDPVKMARAMKLAVEA 229 (264)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3 344555555544
No 307
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=86.04 E-value=8.7 Score=28.49 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=76.3
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE---
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV--- 86 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi--- 86 (198)
.++++.+.+.. .+|++.+.+. .+....+.+.|++.++.-|..+. .+++.+..........+-+
T Consensus 41 ~~~~~~l~~~~~~~~i~vi~~~~~------~~~~~~~~~~Ga~~~l~kp~~~~-----~~~l~~~i~~~~~~~~~~~~~d 109 (237)
T 3cwo_X 41 IDAIKEIMKIDPNAKIIVCSAMGQ------QAMVIEAIKAGAKDFIVNTAAVE-----NPSLITQIAQTFGSQAVVVAID 109 (237)
T ss_dssp HHHHHHHHHHSSSCCEEEECCSST------HHHHHHHHHTTCCEEEESHHHHH-----CTHHHHHHHHHHTGGGEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEECCCC------HHHHHHHHHCCHHheEeCCcccC-----hHHHHHHHHHHhCCCceEEEee
Confidence 45666665554 4566654443 45667788899999886531111 2333333333332211111
Q ss_pred --------EEEeCCCCcccccCH-HHHHHHHc--CCCE--EEEeeC------CHHHHHHHHhhcCCCCeEEEecCh--hh
Q psy9711 87 --------IIYNNTFVTNIDISV-DTLVKLAH--HENI--RGVKDT------DNIKLANMANQTKDLNFSVFAGSA--GY 145 (198)
Q Consensus 87 --------~lYn~P~~tg~~l~~-~~l~~L~~--~p~i--~giK~s------d~~~~~~~~~~~~~~~~~v~~G~d--~~ 145 (198)
.++..-+.+-...++ +.+.++.. .+.| .++..+ +...+.++. ....-.|...+|.. +.
T Consensus 110 ~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~~~~~i~~~~-~~~~~Pvia~~g~~~~~~ 188 (237)
T 3cwo_X 110 AKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVR-PLTTLPIIASGGAGKMEH 188 (237)
T ss_dssp EEESSSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTCCSCCCHHHHHHHG-GGCCSCEEEESCCCSHHH
T ss_pred ecccCCcEEEEEeCCccccccCHHHHHHHHhhcCCCeEEEEecCCCCccccccHHHHHHHH-HhcCCCEEecCCCCCHHH
Confidence 111111111111233 45566663 3434 343222 334455544 23344555555544 35
Q ss_pred HHHHhhcCCCeEEecccc-cchHHHHHHHHHHHcC
Q psy9711 146 LLSGLLVGCAGGINALSA-VLGGPICELYDLAKAG 179 (198)
Q Consensus 146 ~~~~l~~G~~G~is~~~n-~~P~~~~~l~~~~~~g 179 (198)
+...+..|++|++.|.+- .-|..+.++.+.++++
T Consensus 189 ~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~~~ 223 (237)
T 3cwo_X 189 FLEAFLAGADAALAASVFHFREIDVRELKEYLKKH 223 (237)
T ss_dssp HHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHHTT
T ss_pred HHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHHHC
Confidence 677788999999988764 2333444555555443
No 308
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=85.97 E-value=2 Score=35.07 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=45.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 103 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~ 103 (198)
+++|+.++.+ .+.++.+.+.|+|++.+..+-+...+ .+..-.+...++.+.+++||+. ..|. -+++.
T Consensus 124 g~~v~~~v~s------~~~a~~a~~~GaD~i~v~g~~~GG~~-G~~~~~~ll~~i~~~~~iPvia-----aGGI-~~~~d 190 (326)
T 3bo9_A 124 GTKVIPVVAS------DSLARMVERAGADAVIAEGMESGGHI-GEVTTFVLVNKVSRSVNIPVIA-----AGGI-ADGRG 190 (326)
T ss_dssp TCEEEEEESS------HHHHHHHHHTTCSCEEEECTTSSEEC-CSSCHHHHHHHHHHHCSSCEEE-----ESSC-CSHHH
T ss_pred CCcEEEEcCC------HHHHHHHHHcCCCEEEEECCCCCccC-CCccHHHHHHHHHHHcCCCEEE-----ECCC-CCHHH
Confidence 6777776642 34566788999999999876543221 0112346667777778899887 2332 24666
Q ss_pred HHHHHc
Q psy9711 104 LVKLAH 109 (198)
Q Consensus 104 l~~L~~ 109 (198)
+.+..+
T Consensus 191 v~~al~ 196 (326)
T 3bo9_A 191 MAAAFA 196 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 309
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=85.96 E-value=7.9 Score=30.03 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhc---CC-eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 12 KLKIISTLRQET---KK-TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 12 r~~l~~~~~~~~---~~-pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
..++++-+.+++ +. .++......+.....+..+.+.+.++|++++.+... +.....++.+. ..++|++
T Consensus 17 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~-------~~~~~~~~~~~-~~~iPvV 88 (309)
T 2fvy_A 17 MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP-------AAAGTVIEKAR-GQNVPVV 88 (309)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSG-------GGHHHHHHHHH-TTTCCEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc-------chhHHHHHHHH-HCCCcEE
Confidence 445555555555 65 676655556777778888888889999999976431 11123344443 4689999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
++|.+
T Consensus 89 ~~~~~ 93 (309)
T 2fvy_A 89 FFNKE 93 (309)
T ss_dssp EESSC
T ss_pred EecCC
Confidence 99975
No 310
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=85.95 E-value=2.7 Score=34.90 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|. .+ ++ .+.++.|.+++++|
T Consensus 174 ~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~i--EqP~--~~----~d-~~~~~~l~~~~~ip 244 (377)
T 3my9_A 174 HAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFI--EQPV--PR----RH-LDAMAGFAAALDTP 244 (377)
T ss_dssp HHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCE--ECCS--CT----TC-HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEE--ECCC--Cc----cC-HHHHHHHHHhCCCC
Confidence 455567778888776 78888754 45568899999999999887654 3443 12 11 46677888889999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
|+.=. .-.++..+.++.+ .-.++-+|-+ .+....++
T Consensus 245 Ia~dE------~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~i 285 (377)
T 3my9_A 245 ILADE------SCFDAVDLMEVVRRQAADAISVKIMKCGGLMKAQSL 285 (377)
T ss_dssp EEEST------TCSSHHHHHHHHHHTCCSEEECCHHHHTSHHHHHHH
T ss_pred EEECC------ccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHH
Confidence 98732 3456778888873 4688899887 45544443
No 311
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=85.94 E-value=6.8 Score=32.58 Aligned_cols=97 Identities=9% Similarity=-0.041 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+ --|. ++ ++ .+.++.|.+++++
T Consensus 195 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~i--EeP~--~~----~d-~~~~~~l~~~~~i 265 (383)
T 3toy_A 195 DLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWI--EEPV--PQ----EN-LSGHAAVRERSEI 265 (383)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS--CT----TC-HHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEE--ECCC--Cc----ch-HHHHHHHHhhcCC
Confidence 3556677788888876 78888754 55678999999999999887643 3443 11 11 3456788888999
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
||+.=. .-.++..+.++.+ .-.++-+|-+
T Consensus 266 PIa~dE------~~~~~~~~~~~i~~~a~d~v~ik~~ 296 (383)
T 3toy_A 266 PIQAGE------NWWFPRGFAEAIAAGASDFIMPDLM 296 (383)
T ss_dssp CEEECT------TCCHHHHHHHHHHHTCCSEECCCTT
T ss_pred CEEeCC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 998733 2345677888873 4688889987
No 312
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=85.93 E-value=1.3 Score=36.34 Aligned_cols=79 Identities=13% Similarity=-0.050 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
|.+|-.+.++.+++.+ +..|..|. +..+.+..++.++.+.++|++.+.+. -..... +|.++.+.++.+.+.
T Consensus 116 s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~--~P~~v~~lv~~l~~~ 192 (325)
T 3eeg_A 116 TRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNIP-DTTGYM--LPWQYGERIKYLMDN 192 (325)
T ss_dssp CCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEECC-BSSSCC--CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEec-CccCCc--CHHHHHHHHHHHHHh
Confidence 3444444444444444 55666554 34567778888888888888865543 333333 388888888888887
Q ss_pred CC----CCEEEE
Q psy9711 82 SP----IPVIIY 89 (198)
Q Consensus 82 ~~----~pi~lY 89 (198)
.+ +||-++
T Consensus 193 ~~~~~~~~i~~H 204 (325)
T 3eeg_A 193 VSNIDKAILSAH 204 (325)
T ss_dssp CSCGGGSEEEEC
T ss_pred CCCCCceEEEEE
Confidence 75 677665
No 313
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=85.79 E-value=0.46 Score=38.54 Aligned_cols=58 Identities=19% Similarity=0.091 Sum_probs=39.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-----CCCCcCC-CCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-----CPYYFQK-KMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-----~P~y~~~-~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
+.-|+.-+... ++++.+++.||++++++ .+.|+.- . ...-.++.++|.+++++||+..
T Consensus 21 kggv~~d~~~~------e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~--R~~~~~~i~~i~~~v~iPvl~k 84 (297)
T 4adt_A 21 KGGVIMDVKNV------EQAKIAEKAGAIGVMILENIPSELRNTDGVA--RSVDPLKIEEIRKCISINVLAK 84 (297)
T ss_dssp TTCEEEEESSH------HHHHHHHHHTCSEEEECCCCC-----CCCCC--CCCCHHHHHHHHTTCCSEEEEE
T ss_pred cCCcccCCCcH------HHHHHHHHcCCCEEEEecCCCCcchhcCCcc--cCCCHHHHHHHHHhcCCCEEEe
Confidence 55666666542 77899999999999999 3445542 1 1123467788888889999854
No 314
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=85.79 E-value=3.2 Score=35.50 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=101.3
Q ss_pred CccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
+....+..+||......+++.+ ++--.+.+++. .++.+++++.++++|++.+|+-. +...++ --..+.+++
T Consensus 195 ~~qpf~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiTa~-~~eM~~Ra~~a~e~G~~~~mvd~-~~~G~~-a~~~l~~~~ 271 (444)
T 3kdn_A 195 TSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITAD-LLEMEQRLEVLADLGLKHAMVDV-VITGWG-ALRYIRDLA 271 (444)
T ss_dssp CSCTTSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEH-HHHCHH-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEeecCCC-HHHHHHHHHHHHHcCCCEEEEcc-ccccHH-HHHHHHHhc
Confidence 3455677899988776666665 34446789886 99999999999999999988753 322322 023333333
Q ss_pred HHHHccCCCCEEEEeCC-------CCcccccCHHHHHHHHc--------CCCE-EEEeeC-CHHH---HHHHHhh-----
Q psy9711 76 ISVADNSPIPVIIYNNT-------FVTNIDISVDTLVKLAH--------HENI-RGVKDT-DNIK---LANMANQ----- 130 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn~P-------~~tg~~l~~~~l~~L~~--------~p~i-~giK~s-d~~~---~~~~~~~----- 130 (198)
+ ..++||..+-.- ...| ++.-++.+|.+ .+++ +| |.+ +... +.+.++.
T Consensus 272 ~----~~~l~lh~HrA~~ga~~r~~~hG--i~~~vl~Kl~RLaG~D~ih~gt~g~G-Kleg~~~~~~~~~~~lr~~~~~~ 344 (444)
T 3kdn_A 272 A----DYGLAIHGHRAMHAAFTRNPYHG--ISMFVLAKLYRLIGIDQLHVGTAGAG-KLEGERDITIQNARILRESHYKP 344 (444)
T ss_dssp H----HHTCEEEEECTTTHHHHSCTTSE--ECHHHHHHHHHHHTCSEEECCCTTSS-SBCCCHHHHHHHHHHHHCSEECC
T ss_pred c----ccCeEEEEccCcccccccCCCCC--cCHHHHHHHHHHcCCCeeeccccccC-CcCCCHHHHHHHHHHHHhccccc
Confidence 3 357888777431 1123 45555554442 2555 45 666 4433 3444421
Q ss_pred -------------cCCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC-HHH
Q psy9711 131 -------------TKDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK-WEE 183 (198)
Q Consensus 131 -------------~~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd-~~~ 183 (198)
...+-+.|.+|.-+ .+...+ ..|-|-++...+.++ | ..+++-++++.+|. .++
T Consensus 345 d~~~g~~~~q~w~~~~~~~PV~SGGih~~~~p~l~~~~G~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~G~~l~e 423 (444)
T 3kdn_A 345 DENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDE 423 (444)
T ss_dssp CTTCCSCCCEECTTCCCCEEEEESSCCTTSSHHHHHHHCSSSEEECSHHHHTCTTCHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred ccccCccccCcccCCCCceeccCCCCCHhHHHHHHHHhCCcEEEEcCCcccCCCCChhHHHHHHHHHHHHHHcCCCHHH
Confidence 12355788887553 222222 467666654444432 2 56677788888874 443
No 315
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=85.74 E-value=6.6 Score=30.34 Aligned_cols=76 Identities=7% Similarity=0.054 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+..-..++++-+.+++ +..+++.....+.+...+..+...+.++|++++.+... . . ..++.+ ...++
T Consensus 19 ~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~--~----~~~~~~-~~~~i 88 (291)
T 3egc_A 19 ENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG---E--H----DYLRTE-LPKTF 88 (291)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS---C--C----HHHHHS-SCTTS
T ss_pred cchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC---C--h----HHHHHh-hccCC
Confidence 3334455666665555 77777766666788888888999999999999987654 2 2 233333 45689
Q ss_pred CEEEEeCCC
Q psy9711 85 PVIIYNNTF 93 (198)
Q Consensus 85 pi~lYn~P~ 93 (198)
|+++.+.+.
T Consensus 89 PvV~~~~~~ 97 (291)
T 3egc_A 89 PIVAVNREL 97 (291)
T ss_dssp CEEEESSCC
T ss_pred CEEEEeccc
Confidence 999998754
No 316
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=85.71 E-value=4.8 Score=33.19 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
+-.+.++.+++.. ++++++=+ ++-+.++++++++..++.|++.+ --|. . +++ .+.++.|.+++++||+
T Consensus 170 ~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--EqP~--~----~~d-~~~~~~l~~~~~iPIa 240 (367)
T 3dg3_A 170 LDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFA--EELC--P----ADD-VLSRRRLVGQLDMPFI 240 (367)
T ss_dssp HHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCE--ESCS--C----TTS-HHHHHHHHHHCSSCEE
T ss_pred hHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEE--ECCC--C----ccc-HHHHHHHHHhCCCCEE
Confidence 3455677777776 78887754 45578999999999999887643 3443 1 111 3567888888999998
Q ss_pred EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
.=. .-.+++.+.++.+ .-.++-+|-+
T Consensus 241 ~dE------~~~~~~~~~~~i~~~~~d~v~~k~~ 268 (367)
T 3dg3_A 241 ADE------SVPTPADVTREVLGGSATAISIKTA 268 (367)
T ss_dssp ECT------TCSSHHHHHHHHHHTSCSEEEECHH
T ss_pred ecC------CcCCHHHHHHHHHcCCCCEEEeehh
Confidence 733 3456788888763 4688999887
No 317
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=85.56 E-value=5.5 Score=30.58 Aligned_cols=82 Identities=9% Similarity=0.048 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCC----HHHHHHHHHHHHcc---CCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMT----EDLIYEHFISVADN---SPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~----~~~i~~y~~~i~~~---~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+...+.++.|+++|+..+.+.++.... ..+ -+.+.+.++.+++. .++.+.+-|.+......-+++.+.+|.+
T Consensus 84 ~~~~~~i~~a~~lG~~~v~~~~g~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~ 162 (278)
T 1i60_A 84 TEFKGMMETCKTLGVKYVVAVPLVTEQ-KIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVN 162 (278)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCBCSS-CCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccchhcCHHHHHHHHH
Confidence 445667788889999999886544321 112 23455666666544 4799999998753213346777878773
Q ss_pred ---CCCEEEEeeC
Q psy9711 110 ---HENIRGVKDT 119 (198)
Q Consensus 110 ---~p~i~giK~s 119 (198)
.||+--.=|.
T Consensus 163 ~~~~~~~g~~~D~ 175 (278)
T 1i60_A 163 TVNRDNVGLVLDS 175 (278)
T ss_dssp HHCCTTEEEEEEH
T ss_pred HhCCCCeeEEEEe
Confidence 4676544444
No 318
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=85.55 E-value=1.7 Score=34.85 Aligned_cols=84 Identities=8% Similarity=0.110 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCeEEE-eCCCCc-HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQETKKTIIA-GTYCES-TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~-gv~~~~-~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
++++.+.+..++||++ +-|+-. .+++.+.. ++|+|+||+..-.+-.++ +....+.|....+.-
T Consensus 188 elI~~Ike~~~IPVV~IAnGGI~TpedA~~~l----e~GaDGVmVGrAI~~s~D--P~~~Akafv~Av~~~--------- 252 (291)
T 3o07_A 188 SLLKDVLEKGKLPVVNFAAGGVATPADAALLM----QLGCDGVFVGSGIFKSSN--PVRLATAVVEATTHF--------- 252 (291)
T ss_dssp HHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHH----HTTCSCEEECGGGGGSSC--HHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHccCCCEEEecCCCCCCHHHHHHHH----HhCCCEEEEchHHhCCCC--HHHHHHHHHHHHHhc---------
Confidence 4566665555889864 445553 44443333 679999999988887777 888888888776532
Q ss_pred CCCcccccCHHHHHHHHc-C-CCEEEEeeC
Q psy9711 92 TFVTNIDISVDTLVKLAH-H-ENIRGVKDT 119 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~-~-p~i~giK~s 119 (198)
-+|+.+.++++ + .-.+|+-.+
T Consensus 253 -------~~~~~~~~~s~~l~~~m~g~~~~ 275 (291)
T 3o07_A 253 -------DNPSKLLEVSSDLGELMGGVSIE 275 (291)
T ss_dssp -------TCHHHHHHHHSSCCCC-------
T ss_pred -------cCHHHHHHHHhcccccccCcchh
Confidence 34778888884 4 456666554
No 319
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=85.49 E-value=5.2 Score=31.09 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
.=..++++-+.+++ +..++..-+ .+.++..+..+.+.+.|+|++++.|.. .+.....++.+. ..++|+
T Consensus 15 ~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~-------~~~~~~~~~~~~-~~~iPv 85 (306)
T 8abp_A 15 PWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPD-------PKLGSAIVAKAR-GYDMKV 85 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSC-------GGGHHHHHHHHH-HTTCEE
T ss_pred hHHHHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCC-------chhhHHHHHHHH-HCCCcE
Confidence 33445555555554 666555434 478888889999999999999998653 222223344443 468999
Q ss_pred EEEeC
Q psy9711 87 IIYNN 91 (198)
Q Consensus 87 ~lYn~ 91 (198)
+++|.
T Consensus 86 V~~~~ 90 (306)
T 8abp_A 86 IAVDD 90 (306)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 99995
No 320
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=85.48 E-value=6.4 Score=32.44 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=49.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--CCCCCH--------HHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYF--QKKMTE--------DLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--~~~~~~--------~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+++|++.+. + .+.++.+.+.|+|++.+..|.+. ..+..+ ....+..+++.+.+++||+.
T Consensus 145 g~~v~~~v~--t----~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPVia----- 213 (369)
T 3bw2_A 145 GTLTLVTAT--T----PEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVA----- 213 (369)
T ss_dssp TCEEEEEES--S----HHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEE-----
T ss_pred CCeEEEECC--C----HHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEE-----
Confidence 456665553 2 34567888999999999766431 000000 23467778888888999886
Q ss_pred CcccccCHHHHHHHHcC-CCEEEE
Q psy9711 94 VTNIDISVDTLVKLAHH-ENIRGV 116 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~-p~i~gi 116 (198)
.|---+++.+.++.+. ...+.+
T Consensus 214 -aGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 214 -AGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp -ESSCCSHHHHHHHHHTTCSEEEE
T ss_pred -ECCCCCHHHHHHHHHcCCCEEEE
Confidence 3322377888777754 344443
No 321
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Probab=85.47 E-value=15 Score=30.71 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
-.+.++.+++++ ++++++=+ ++-+.++++++++..++.|++.+= . |.. + . +.++.|.+++++||+.
T Consensus 199 ~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-~-P~~---d--~----~~~~~l~~~~~iPIa~ 267 (409)
T 3go2_A 199 LRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVE-I-DSY---S--P----QGLAYVRNHSPHPISS 267 (409)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEE-C-CCS---C--H----HHHHHHHHTCSSCEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEE-e-CcC---C--H----HHHHHHHhhCCCCEEe
Confidence 356777887776 88888855 456789999999999999988766 2 321 2 3 3468888889999987
Q ss_pred EeCCCCcccccCHHHHHHHHc--CCCEEEEeeC--CHHHHHH
Q psy9711 89 YNNTFVTNIDISVDTLVKLAH--HENIRGVKDT--DNIKLAN 126 (198)
Q Consensus 89 Yn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s--d~~~~~~ 126 (198)
=. .-.+++.+.++.+ .-.++-+|-+ -+....+
T Consensus 268 dE------~~~~~~~~~~~i~~~~~d~v~~k~~~GGit~~~~ 303 (409)
T 3go2_A 268 CE------TLFGIREFKPFFDANAVDVAIVDTIWNGVWQSMK 303 (409)
T ss_dssp CT------TCCHHHHHHHHHHTTCCSEEEECHHHHCHHHHHH
T ss_pred CC------CcCCHHHHHHHHHhCCCCEEEeCCCCCCHHHHHH
Confidence 33 2346788888874 3578888887 4444333
No 322
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=85.47 E-value=3.3 Score=39.04 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC---------------CCCc--------CC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC---------------PYYF--------QK 64 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~---------------P~y~--------~~ 64 (198)
+.+.-.++++.+.+..++||++=+.. +..+..+.++.++++|+|++.+.. |... ..
T Consensus 687 ~~~~~~~iv~~v~~~~~~Pv~vK~~~-~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~ 765 (1025)
T 1gte_A 687 DPELVRNICRWVRQAVQIPFFAKLTP-NVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGV 765 (1025)
T ss_dssp CHHHHHHHHHHHHHHCSSCEEEEECS-CSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEE
T ss_pred CHHHHHHHHHHHHHhhCCceEEEeCC-ChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCC
Confidence 45556677887776668999986654 445788999999999999999942 1100 00
Q ss_pred CCCHH---HHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 65 KMTED---LIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 65 ~~~~~---~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
+ .+. --.++.+++.+++ ++||+. .|---+.+...+...
T Consensus 766 s-g~~~~~~~~~~v~~v~~~~~~ipvi~------~GGI~s~~da~~~l~ 807 (1025)
T 1gte_A 766 S-GTAIRPIALRAVTTIARALPGFPILA------TGGIDSAESGLQFLH 807 (1025)
T ss_dssp E-SGGGHHHHHHHHHHHHHHSTTCCEEE------ESSCCSHHHHHHHHH
T ss_pred C-cccchhHHHHHHHHHHHHcCCCCEEE------ecCcCCHHHHHHHHH
Confidence 0 011 1146778888888 799886 344446666666554
No 323
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=85.45 E-value=10 Score=28.83 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEE----
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVI---- 87 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~---- 87 (198)
++++.+.+..++|++++-+-.+.++ ++.+.++|||++++....... ++.+.+..+.+-+.. .+.+-
T Consensus 64 ~~i~~i~~~~~ipv~v~ggi~~~~~----~~~~l~~Gad~V~lg~~~l~~----p~~~~~~~~~~g~~~~~~ld~~~~~~ 135 (244)
T 2y88_A 64 ELLAEVVGKLDVQVELSGGIRDDES----LAAALATGCARVNVGTAALEN----PQWCARVIGEHGDQVAVGLDVQIIDG 135 (244)
T ss_dssp HHHHHHHHHCSSEEEEESSCCSHHH----HHHHHHTTCSEEEECHHHHHC----HHHHHHHHHHHGGGEEEEEEEEEETT
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHH----HHHHHHcCCCEEEECchHhhC----hHHHHHHHHHcCCCEEEEEeccccCC
Confidence 5566666656999999866655443 666667899999987544321 444555555443222 11111
Q ss_pred ---EEeCCCCcccccCHHHHHHHHcC-CCEEEEee--------C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhc
Q psy9711 88 ---IYNNTFVTNIDISVDTLVKLAHH-ENIRGVKD--------T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLV 152 (198)
Q Consensus 88 ---lYn~P~~tg~~l~~~~l~~L~~~-p~i~giK~--------s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~ 152 (198)
++-.-......-+.+.+.++.+. ...+.+=. . |+..+.++. +..+-.+..-.|-. +.+...+..
T Consensus 136 ~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~-~~~~ipvia~GGI~~~~d~~~~~~~ 214 (244)
T 2y88_A 136 EHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVA-DRTDAPVIASGGVSSLDDLRAIATL 214 (244)
T ss_dssp EEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHH-TTCSSCEEEESCCCSHHHHHHHHTT
T ss_pred CCEEEECCccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHH-HhCCCCEEEECCCCCHHHHHHHHhh
Confidence 11100000011124555566554 23333311 1 666776665 32222232223333 345666777
Q ss_pred ---CCCeEEeccccc
Q psy9711 153 ---GCAGGINALSAV 164 (198)
Q Consensus 153 ---G~~G~is~~~n~ 164 (198)
|++|++.|.+-+
T Consensus 215 ~~~Gad~v~vG~al~ 229 (244)
T 2y88_A 215 THRGVEGAIVGKALY 229 (244)
T ss_dssp GGGTEEEEEECHHHH
T ss_pred ccCCCCEEEEcHHHH
Confidence 999999887643
No 324
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}
Probab=85.41 E-value=7.5 Score=32.22 Aligned_cols=118 Identities=10% Similarity=0.110 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
.++-.+.++.+++.. ++++++=+ ++-+.+++++.++..++.|+. .+--|. ++ ++ .+-++.+.+++++|
T Consensus 176 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~--~~----~d-~~~~~~l~~~~~ip 246 (381)
T 3fcp_A 176 LATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVD--LIEQPV--SA----HD-NAALVRLSQQIETA 246 (381)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCS--EEECCB--CT----TC-HHHHHHHHHHSSSE
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCcc--ceeCCC--Cc----cc-HHHHHHHHHhCCCC
Confidence 455667788888877 68888754 556789999999999998765 334553 12 11 34567788888999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
|..=. ...+...+.++.+ ..+++-+|-+ .+....++......-++.+..|
T Consensus 247 Ia~dE------~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~ 301 (381)
T 3fcp_A 247 ILADE------AVATAYDGYQLAQQGFTGAYALKIAKAGGPNSVLALARVAQAAGIGLYGG 301 (381)
T ss_dssp EEEST------TCCSHHHHHHHHHTTCCSEEEECHHHHTSTTHHHHHHHHHHHHTCEEEEC
T ss_pred EEECC------CcCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCceecC
Confidence 98732 2346777888874 4688999987 3444433332111234555544
No 325
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=85.30 E-value=4.3 Score=34.47 Aligned_cols=81 Identities=9% Similarity=-0.019 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHhc---CCeEEEeC---CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 7 STEEEKLKIISTLRQET---KKTIIAGT---YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~---~~pvi~gv---~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.|.+|-.+.+..+++.+ +..|..+. ...+.+..++.++.+.++|++.+.+.-- .... +|.++.+.++.+.+
T Consensus 144 ~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~DT-vG~~--~P~~v~~lv~~l~~ 220 (423)
T 3ivs_A 144 KDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIADT-VGCA--TPRQVYDLIRTLRG 220 (423)
T ss_dssp ---CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEEET-TSCC--CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccCCc-cCcC--CHHHHHHHHHHHHh
Confidence 34455555555555555 66666554 2345688899999999999997665433 3333 39999999999998
Q ss_pred cCCCCEEEEe
Q psy9711 81 NSPIPVIIYN 90 (198)
Q Consensus 81 ~~~~pi~lYn 90 (198)
..++||-++-
T Consensus 221 ~~~~~i~~H~ 230 (423)
T 3ivs_A 221 VVSCDIECHF 230 (423)
T ss_dssp HCSSEEEEEE
T ss_pred hcCCeEEEEE
Confidence 8888887663
No 326
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=85.30 E-value=3.6 Score=31.65 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
=..++++.+.+++ +..++...+..+.+...+..+...+.++|++++.++. .. . ... ..+.+. ..++|++
T Consensus 15 f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-~~-~--~~~---~~~~~~-~~~iPvV 86 (271)
T 2dri_A 15 FFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD-SD-A--VGN---AVKMAN-QANIPVI 86 (271)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSS-TT-T--THH---HHHHHH-HTTCCEE
T ss_pred HHHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-hH-H--HHH---HHHHHH-HCCCcEE
Confidence 3445565555555 6676665555666666777788888899999986543 11 1 122 233333 4589999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.|.+
T Consensus 87 ~i~~~ 91 (271)
T 2dri_A 87 TLDRQ 91 (271)
T ss_dssp EESSC
T ss_pred EecCC
Confidence 99874
No 327
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=85.25 E-value=11 Score=28.99 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHhcCCe---EEEeC------CCCc-------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH--
Q psy9711 7 STEEEKLKIISTLRQETKKT---IIAGT------YCES-------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE-- 68 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~p---vi~gv------~~~~-------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~-- 68 (198)
++.++..++-+.+.+. ++. +.++. ++.+ .+...+.++.|+++|+..+.+.+...... .+.
T Consensus 44 ~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~-~~~~~ 121 (285)
T 1qtw_A 44 LTTQTIDEFKAACEKY-HYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQ-ISEED 121 (285)
T ss_dssp CCHHHHHHHHHHHHHT-TCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTT-SCHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCC-CCHHH
Confidence 6677777777776655 444 32221 1111 23345567888999999998876544322 013
Q ss_pred --HHHHHHHHHHHcc-CCCCEEEEeCCCCcc-cccCHHHHHHHHc-C---CCEEEEeeC
Q psy9711 69 --DLIYEHFISVADN-SPIPVIIYNNTFVTN-IDISVDTLVKLAH-H---ENIRGVKDT 119 (198)
Q Consensus 69 --~~i~~y~~~i~~~-~~~pi~lYn~P~~tg-~~l~~~~l~~L~~-~---p~i~giK~s 119 (198)
+.+.+.++.+++. .++.+.+-|.+.... ..-+++.+.+|.+ + ||+--+=|.
T Consensus 122 ~~~~~~~~l~~l~a~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~~~g~~~D~ 180 (285)
T 1qtw_A 122 CLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDT 180 (285)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSHHHHHHHHHHCSCGGGEEEEEEH
T ss_pred HHHHHHHHHHHHHhccCCCEEEEecCCCCCCcccCCHHHHHHHHHhhcCccceEEEEEh
Confidence 2355667777654 478888988864321 1237788888873 5 665544444
No 328
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=85.10 E-value=6.6 Score=31.24 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
-..++++-+.+++ +..++...+..+.+...+..+...+.++|++++.+.. .+ .+. +...++..++|++
T Consensus 77 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~~--~~~----~~~~~~~~~iPvV 147 (338)
T 3dbi_A 77 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF---LS--VDE----IDDIIDAHSQPIM 147 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSS---SC--HHH----HHHHHHHCSSCEE
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCC---CC--hHH----HHHHHHcCCCCEE
Confidence 3445555555555 7777776677777888888888889999999997643 22 333 3345566789999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.|.+
T Consensus 148 ~~~~~ 152 (338)
T 3dbi_A 148 VLNRR 152 (338)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99864
No 329
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=85.09 E-value=6.6 Score=30.10 Aligned_cols=74 Identities=5% Similarity=0.008 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+..-..++++.+.+++ +..++......+.+...+..+...+.++|++++.+... ...++.+. ..++
T Consensus 18 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----------~~~~~~l~-~~~i 86 (276)
T 3jy6_A 18 DDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN----------PQTVQEIL-HQQM 86 (276)
T ss_dssp TSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC----------HHHHHHHH-TTSS
T ss_pred CchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc----------HHHHHHHH-HCCC
Confidence 3344556666665555 77777766667777778888889899999999986542 23444443 4689
Q ss_pred CEEEEeCC
Q psy9711 85 PVIIYNNT 92 (198)
Q Consensus 85 pi~lYn~P 92 (198)
|+++.+.+
T Consensus 87 PvV~i~~~ 94 (276)
T 3jy6_A 87 PVVSVDRE 94 (276)
T ss_dssp CEEEESCC
T ss_pred CEEEEecc
Confidence 99999874
No 330
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Probab=85.07 E-value=15 Score=30.58 Aligned_cols=103 Identities=8% Similarity=-0.008 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 8 TEEEKLKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
+.++-.+.++.+++.. ++++++=+ ++-+.++++++++..++.|+..+ --|. + + .+.++.|.+++++|
T Consensus 195 ~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~i--EqP~-------~-d-~~~~~~l~~~~~iP 263 (398)
T 4dye_A 195 DCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYL--EDPC-------V-G-IEGMAQVKAKVRIP 263 (398)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEE--ECCS-------S-H-HHHHHHHHHHCCSC
T ss_pred CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEE--cCCC-------C-C-HHHHHHHHhhCCCC
Confidence 4556667777777777 78888754 45578999999999998876533 3332 2 2 46678888889999
Q ss_pred EEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
|..=.. -.+...+.++.+ ...++-+|-+ .+....++
T Consensus 264 Ia~dE~------~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~i 304 (398)
T 4dye_A 264 LCTNMC------VVRFEDFAPAMRLNAVDVIHGDVYKWGGIAATKAL 304 (398)
T ss_dssp EEESSS------CCSGGGHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred EEeCCc------CCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHH
Confidence 887332 245667777774 4688899987 45444443
No 331
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=84.97 E-value=14 Score=29.98 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhc--CCeEEEeCCCCcH------------------------------HHHHHHHHHHHhcCCCEEEEcC
Q psy9711 11 EKLKIISTLRQET--KKTIIAGTYCEST------------------------------RATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 11 Er~~l~~~~~~~~--~~pvi~gv~~~~~------------------------------~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
...+.++.+.+.. ++|++..++++=| +..++.++...++|+|++++.-
T Consensus 132 ~v~eai~~l~~~l~~~~pligf~g~P~Tla~~l~~~~~~~~~~~~~pe~~~~ll~~i~~~~~~~~~~qi~aGad~i~i~D 211 (348)
T 4ay7_A 132 VVLEAIKIIREKVGPDVPIVGGMEGPVTVASDLVSVKSFMKWSIKKTDLLEQALDIATEASIIYANAMVEAGADVIAIAD 211 (348)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEECHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCeeEEEeccchHHHHHhcccchHHHHHHHHChHhHHHHHHHHHHHHHHHHHHHHhcCCCcceeec
Confidence 3455666666666 8999888776422 3335566666789999999987
Q ss_pred CCCcCCCCCHHHHHH----HHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC-CEEEEeeC--CHHHHHHHH
Q psy9711 59 PYYFQKKMTEDLIYE----HFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE-NIRGVKDT--DNIKLANMA 128 (198)
Q Consensus 59 P~y~~~~~~~~~i~~----y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p-~i~giK~s--d~~~~~~~~ 128 (198)
+.-...-++++...+ |+++|.+..+-+.++ ++.+. ....+..+++.+ +++++=.+ +.....+.+
T Consensus 212 ~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~ii-h~~g~-----~~~~l~~~~~~g~d~i~~d~~~~~~~~~k~~~ 282 (348)
T 4ay7_A 212 PVASPDLMSPDSFRQFLKSRLQKFASSVNSVTVL-HICGN-----VNPILSDMADCGFEGLSVEEKIGSAKKGKEVI 282 (348)
T ss_dssp GGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEEEE-ECCSC-----CHHHHHHHHTSCCSEEECCGGGCCHHHHHHHH
T ss_pred cccccccCCHHHHHHHhhHHHHHHHhhccCCcEE-EecCC-----cHHHHHHHHHhccccccccchhhHHHHHHHHh
Confidence 754321123666554 568899888643333 44332 134677788764 67777555 455544433
No 332
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=84.96 E-value=1.3 Score=34.64 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 31 TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 31 v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
.++++.+.+.+.++.+.+.|+|++.+.- ....+.+.+.+..+++-+ +++|+++
T Consensus 14 ~gDP~~~~t~~~~~~l~~~GaD~IelG~----S~g~t~~~~~~~v~~ir~-~~~Pivl 66 (234)
T 2f6u_A 14 KLDPDRTNTDEIIKAVADSGTDAVMISG----TQNVTYEKARTLIEKVSQ-YGLPIVV 66 (234)
T ss_dssp EECTTSCCCHHHHHHHHTTTCSEEEECC----CTTCCHHHHHHHHHHHTT-SCCCEEE
T ss_pred eeCCCccccHHHHHHHHHcCCCEEEECC----CCCCCHHHHHHHHHHhcC-CCCCEEE
Confidence 4455555666678888999999999986 122358999999999987 8899886
No 333
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=84.85 E-value=11 Score=30.40 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=91.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc--CCCCcC--------CCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL--CPYYFQ--------KKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~--~P~y~~--------~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+.|+++++.+.+.++..+.++.++++ +|+|-+- .|.... .-..++-+.+-.+.+.++++.||.+=-.++
T Consensus 58 ~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G 136 (318)
T 1vhn_A 58 ERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLG 136 (318)
T ss_dssp CTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 88999999888889999999999999 9999885 454210 001367777888888888899998865543
Q ss_pred CcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHHHhhcCCCCeEEE-ecC--h-hhHHHHhh-cCCCe
Q psy9711 94 VTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANMANQTKDLNFSVF-AGS--A-GYLLSGLL-VGCAG 156 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~~~~~~~~~~~v~-~G~--d-~~~~~~l~-~G~~G 156 (198)
.+..+ +.+...++.+.+ +.+|=.+ ++. .+.+... ++.|+ +|. + ......+. .|++|
T Consensus 137 ~~~~~-~~~~a~~l~~~G-~d~i~v~g~~~~~~~~~~~~~~----~i~~i~~-~ipVi~~GgI~s~~da~~~l~~~gad~ 209 (318)
T 1vhn_A 137 WEKNE-VEEIYRILVEEG-VDEVFIHTRTVVQSFTGRAEWK----ALSVLEK-RIPTFVSGDIFTPEDAKRALEESGCDG 209 (318)
T ss_dssp SSSCC-HHHHHHHHHHTT-CCEEEEESSCTTTTTSSCCCGG----GGGGSCC-SSCEEEESSCCSHHHHHHHHHHHCCSE
T ss_pred CChHH-HHHHHHHHHHhC-CCEEEEcCCCccccCCCCcCHH----HHHHHHc-CCeEEEECCcCCHHHHHHHHHcCCCCE
Confidence 22111 124455554432 2222111 222 2222222 44444 342 1 23456666 69999
Q ss_pred EEeccccc-chHHHHHHHHHHHcC
Q psy9711 157 GINALSAV-LGGPICELYDLAKAG 179 (198)
Q Consensus 157 ~is~~~n~-~P~~~~~l~~~~~~g 179 (198)
++.|-+.+ -|.++.++.+.+..|
T Consensus 210 V~iGR~~l~~P~l~~~~~~~~~~g 233 (318)
T 1vhn_A 210 LLVARGAIGRPWIFKQIKDFLRSG 233 (318)
T ss_dssp EEESGGGTTCTTHHHHHHHHHHHS
T ss_pred EEECHHHHhCcchHHHHHHHHhCC
Confidence 99998755 377777777766544
No 334
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=84.70 E-value=2.5 Score=35.09 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
.++.+++..++||++-.. .+ .+.++.+.++|+|++.+...
T Consensus 208 ~i~~lr~~~~~PvivK~v-~~----~e~A~~a~~~GaD~I~vsn~ 247 (352)
T 3sgz_A 208 DLSLLQSITRLPIILKGI-LT----KEDAELAMKHNVQGIVVSNH 247 (352)
T ss_dssp HHHHHHHHCCSCEEEEEE-CS----HHHHHHHHHTTCSEEEECCG
T ss_pred HHHHHHHhcCCCEEEEec-Cc----HHHHHHHHHcCCCEEEEeCC
Confidence 355555555899877422 23 45688899999999999864
No 335
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=84.66 E-value=6.8 Score=30.21 Aligned_cols=73 Identities=12% Similarity=-0.024 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..++......+.+...+..+...+.++|++++.+.... . ... .++.+. ..++|+++
T Consensus 17 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~--~~~---~~~~~~-~~~iPvV~ 88 (290)
T 2fn9_A 17 FVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDAD--G--SIA---NVKRAK-EAGIPVFC 88 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTT--T--THH---HHHHHH-HTTCCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH--H--HHH---HHHHHH-HCCCeEEE
Confidence 344555555444 666666555566777778888888889999998754311 1 122 233333 46899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 89 ~~~~ 92 (290)
T 2fn9_A 89 VDRG 92 (290)
T ss_dssp ESSC
T ss_pred EecC
Confidence 9864
No 336
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=84.64 E-value=8.6 Score=30.58 Aligned_cols=104 Identities=7% Similarity=0.011 Sum_probs=71.3
Q ss_pred CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCccc--cc
Q psy9711 24 KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNI--DI 99 (198)
Q Consensus 24 ~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~--~l 99 (198)
+.| +.+-+...+.++.++.++.+.+.|+|.+=+---++..++ ..+.+.+..+.+-+.+ ++|+++-.-+..-|- ..
T Consensus 38 g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~-~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~ 116 (276)
T 3o1n_A 38 GAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVT-TAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQAL 116 (276)
T ss_dssp SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTT-CHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCC
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccC-cHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCC
Confidence 344 455778889999999999999999999999887776554 2477888888888777 799988776544443 45
Q ss_pred CHHHHHHHH----cC--CCEEEEeeC-CHHHHHHHH
Q psy9711 100 SVDTLVKLA----HH--ENIRGVKDT-DNIKLANMA 128 (198)
Q Consensus 100 ~~~~l~~L~----~~--p~i~giK~s-d~~~~~~~~ 128 (198)
+.+...+|. +. +..+=|=.. +-..+.+++
T Consensus 117 ~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~ 152 (276)
T 3o1n_A 117 TTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATV 152 (276)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHH
Confidence 665444443 33 445555444 444455554
No 337
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=84.64 E-value=4.7 Score=30.88 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH-HHHccCC
Q psy9711 8 TEEEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI-SVADNSP 83 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~-~i~~~~~ 83 (198)
+..-..++++.+.+++ +..+++.....+.....+..+.+.+.++|++++.+ .+ ++ . ++ .+ ...+
T Consensus 19 ~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~-----~~--~~-~---~~~~l-~~~~ 86 (277)
T 3e61_A 19 SNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA-----FN--EN-I---IENTL-TDHH 86 (277)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG-----GG--HH-H---HHHHH-HHC-
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-----CC--hH-H---HHHHH-HcCC
Confidence 3344455666665555 77777766666788888889999999999999976 11 32 2 33 33 3459
Q ss_pred CCEEEEeCCC
Q psy9711 84 IPVIIYNNTF 93 (198)
Q Consensus 84 ~pi~lYn~P~ 93 (198)
+|+++++.+.
T Consensus 87 iPvV~~~~~~ 96 (277)
T 3e61_A 87 IPFVFIDRIN 96 (277)
T ss_dssp CCEEEGGGCC
T ss_pred CCEEEEeccC
Confidence 9999998754
No 338
>4f0h_A Ribulose bisphosphate carboxylase large chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_A 4f0m_A 1bwv_A* 1iwa_A 1bxn_A
Probab=84.61 E-value=3.6 Score=35.66 Aligned_cols=167 Identities=10% Similarity=-0.002 Sum_probs=95.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+..+||......+++.+ ++-..+.+.+.+.++.+++++.+.++|+.++|+- +.- ..+ .....+
T Consensus 217 ~Qpf~p~~eRv~~v~eai~rA~~eTGe~K~~~~NiTa~~~~eM~~Ra~~a~e~G~~~vmvd-~~~-G~~-----a~~~La 289 (493)
T 4f0h_A 217 SQPFMRWRERYLFVMEAVNKAAAATGEVKGHYLNVTAATMEEMYARAQLAKELGSVIIMID-LVI-GYT-----AIQTMA 289 (493)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE-GGG-CHH-----HHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhHCCcceEEeecCCCCHHHHHHHHHHHHhcCCCeEEEe-ccc-ccc-----hhHHHH
Confidence 445677889988777666665 3445678998889999999999999999999875 222 221 122333
Q ss_pred HHHccCCCCEEEEeCCCCcc-------cccCHHHHH---HHH--c---CCCEEEEeeC-CHHH---HHHHHhhc------
Q psy9711 77 SVADNSPIPVIIYNNTFVTN-------IDISVDTLV---KLA--H---HENIRGVKDT-DNIK---LANMANQT------ 131 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~---~L~--~---~p~i~giK~s-d~~~---~~~~~~~~------ 131 (198)
..++..++||..+-. ..| ..++..++. ||+ + .++++| |.+ |... +...++..
T Consensus 290 ~~~r~~~l~LH~HRA--ghga~sr~~~hGis~~Vl~Kl~RLaGaD~iH~gT~~G-Klegd~~~~~~~~d~l~~~~~~~d~ 366 (493)
T 4f0h_A 290 KWARDNDMILHLHRA--GNSTYSRQKNHGMNFRVICKWMRMAGVDHIHAGTVVG-KLEGDPIITRGFYKTLLLPKLERNL 366 (493)
T ss_dssp HHHHHHTCEEEEECT--TTHHHHSSSSSEECHHHHHHHHHHHTCSEEECCCSSS-TTCCCHHHHHHHHHHHHCSEECCBT
T ss_pred HHHHHcCceEEeccC--ccccccCCCCCCCCHHHHHHHHHHcCCCeeeecCcCC-cccCCHHHHHHHHHHhhhhhcccch
Confidence 334444787765532 211 234555554 554 2 255544 666 5433 33333210
Q ss_pred ------------CCCCeEEEecChh-hHHHHh--hcCCCeEEecccccc--h-------HHHHHHHHHHHcC
Q psy9711 132 ------------KDLNFSVFAGSAG-YLLSGL--LVGCAGGINALSAVL--G-------GPICELYDLAKAG 179 (198)
Q Consensus 132 ------------~~~~~~v~~G~d~-~~~~~l--~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~g 179 (198)
..+-+.|.+|.-+ ...+.+ ..|-|-++...+.++ | ..+++-|+++.+|
T Consensus 367 ~~g~~~~q~w~~~k~~~PV~SGGih~g~~p~l~~~~G~D~vl~~GGGi~GHP~G~aAGa~A~RqA~eA~~~~ 438 (493)
T 4f0h_A 367 QEGLFFDMDWASLRKVMPVASGGIHAGQMHQLIHYLGEDVVLQFGGGTIGHPDGIQSGATANRVALEAMILA 438 (493)
T ss_dssp TTTBCSCEECTTCCCCEEEECSSCCGGGHHHHHHHHCSSCEEEESHHHHTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCcccCCCCceEecCCCCCHHHHHHHHHHhCCcEEEEcCCcccCCCCcccchHHHHHHHHHHHHHh
Confidence 1355778776543 233332 467765554333332 2 4566667777653
No 339
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=84.56 E-value=13 Score=29.35 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=95.9
Q ss_pred CCeEEEeC-CCCcHHHHHHHHHHHHh-c-CCCEEEE---cCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCccc
Q psy9711 24 KKTIIAGT-YCESTRATIDLTQKAAK-A-GANAALI---LCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNI 97 (198)
Q Consensus 24 ~~pvi~gv-~~~~~~~~i~~a~~a~~-~-Gad~v~~---~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~ 97 (198)
++.++-.+ |+.+.+|+++.+|.|.+ + |-+.+=+ .-+.|..|. ..+.++--+.+.+ -+..++.|-.+
T Consensus 73 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~~llpD--~~~tv~aa~~L~~-~Gf~Vlpy~~d----- 144 (265)
T 1wv2_A 73 RYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPN--VVETLKAAEQLVK-DGFDVMVYTSD----- 144 (265)
T ss_dssp TSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBC--HHHHHHHHHHHHT-TTCEEEEEECS-----
T ss_pred CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCccccCcC--HHHHHHHHHHHHH-CCCEEEEEeCC-----
Confidence 67787765 66678999999999999 6 5554433 245566666 8888888888874 57888877765
Q ss_pred ccCHHHHHHHHcC-CCEEEE-------eeC--CHHHHHHHHhhcCCCCeEEEec----ChhhHHHHhhcCCCeEEecccc
Q psy9711 98 DISVDTLVKLAHH-ENIRGV-------KDT--DNIKLANMANQTKDLNFSVFAG----SAGYLLSGLLVGCAGGINALSA 163 (198)
Q Consensus 98 ~l~~~~l~~L~~~-p~i~gi-------K~s--d~~~~~~~~~~~~~~~~~v~~G----~d~~~~~~l~~G~~G~is~~~n 163 (198)
++.+-++|.+. +.++-- -.+ |+..+..+.. . .++.|+.+ ..+....++.+|++|++.+++-
T Consensus 145 --d~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e-~--~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI 219 (265)
T 1wv2_A 145 --DPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILE-E--AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAI 219 (265)
T ss_dssp --CHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHH-H--CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred --CHHHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHh-c--CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 36777888764 444422 111 6666666553 2 33444432 2246778899999999999875
Q ss_pred cc---hH-HHHHHHHHHHcCCH
Q psy9711 164 VL---GG-PICELYDLAKAGKW 181 (198)
Q Consensus 164 ~~---P~-~~~~l~~~~~~gd~ 181 (198)
.- |. ...++.+++++|+.
T Consensus 220 ~~a~dP~~ma~af~~Av~aGr~ 241 (265)
T 1wv2_A 220 AHAKDPVMMAEAMKHAIVAGRL 241 (265)
T ss_dssp HTSSSHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHH
Confidence 54 54 34555566666653
No 340
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=84.54 E-value=4.5 Score=34.42 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=98.4
Q ss_pred CccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 2 SNSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
+....+..+||......+++.+ + +--.+.++ .+.++.+++++.++++|++++|+- ++...+ .. .
T Consensus 201 ~~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiT-~~~~em~~Ra~~a~e~G~~~~mvd-~~~~G~----~a----~ 270 (432)
T 3nwr_A 201 ANPAHAPLAERVRAVMSEVRRYRERSGRPVMVAFNIT-DDLDAMRRHAELVEREGGSCVMAS-INWCGF----SA----I 270 (432)
T ss_dssp SSCTTSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC-SCHHHHHHHHHHHHHTTCCEEEEE-HHHHCH----HH----H
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhCCcceEEeecC-CCHHHHHHHHHHHHHcCCCEEEEe-ccCCCH----HH----H
Confidence 3455677899988766666555 3 34467888 689999999999999999998875 332232 22 2
Q ss_pred HHHHccCCCCEEEEeCCCCcc-------cccCHHHHHHHHcC--------CCEEEEeeC--CHH--H-HHHHHhhc--CC
Q psy9711 76 ISVADNSPIPVIIYNNTFVTN-------IDISVDTLVKLAHH--------ENIRGVKDT--DNI--K-LANMANQT--KD 133 (198)
Q Consensus 76 ~~i~~~~~~pi~lYn~P~~tg-------~~l~~~~l~~L~~~--------p~i~giK~s--d~~--~-~~~~~~~~--~~ 133 (198)
+.+++..++||.++-. ..| ..++..++.+|.++ |+++| |.. +.. . +...+... ..
T Consensus 271 ~~l~r~~~~~lh~HrA--~hga~~r~~~~Gi~~~vl~Kl~RlaG~D~ih~gt~~G-K~~e~~~~~~~~~~~~~~~~~~~k 347 (432)
T 3nwr_A 271 QSLRRTTPLVLHAHRN--GYGMMSRDPALGMSFQAYQTLWRLSGVDHMHVHGLAG-KFAQSDAEVIESARDCATPLAAGC 347 (432)
T ss_dssp HHHHHHCCSEEEEECT--TTTTTTSSTTEEECHHHHHHHHHTBTCSEEEEECTTC-SSSCCHHHHHHHHHHHHSCSSTTC
T ss_pred HHHHhcCCceEEECcC--cccccccCCCCCcCHHHHHHHHHHcCCCeeecCCCcC-CcCCCcHHHHHHHHHHhCchhcCC
Confidence 3444456788777643 222 23555566666532 44544 664 222 1 22222111 12
Q ss_pred C--CeEEEecChh--hHHHHh-hcC-CCeEEecccccc---------hHHHHHHHHHHHcCC-HHHH
Q psy9711 134 L--NFSVFAGSAG--YLLSGL-LVG-CAGGINALSAVL---------GGPICELYDLAKAGK-WEEA 184 (198)
Q Consensus 134 ~--~~~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~---------P~~~~~l~~~~~~gd-~~~A 184 (198)
+ -|.|.+|.-. .+...+ ..| -|-++...+.++ ...+++-|+++.+|. .+++
T Consensus 348 ~~~v~PV~SGGih~~~~p~l~~~~G~~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~G~~l~e~ 414 (432)
T 3nwr_A 348 DDAVLPAFSSGQWAGTVQATFDAVRSTDLLFMSGGGILAHPDGPAAGVTSVRQAWAAVQAGTPLPVY 414 (432)
T ss_dssp CCCCEEEECSSCSGGGHHHHHHHHSSSCSEEECSHHHHTCTTCHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCceEeeecCCCCHHHHHHHHHHhCCCcEEEEcCCccccCCCChHHHHHHHHHHHHHHHcCCCHHHH
Confidence 3 3888887654 233322 467 365554444333 256677788888874 4443
No 341
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Probab=84.36 E-value=5.5 Score=31.97 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=40.6
Q ss_pred eCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 30 GTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 30 gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
++--...+++++..+++.+.|+.++.+.+- +.....+++.+...|+.+. ..++||+++-..
T Consensus 120 ~l~~~~~~~a~~el~~~~~~g~~Gv~l~~~-~~~~~l~d~~~~p~~~~~~-e~~lpv~iH~~~ 180 (334)
T 2hbv_A 120 QVPLQDLDLACKEASRAVAAGHLGIQIGNH-LGDKDLDDATLEAFLTHCA-NEDIPILVHPWD 180 (334)
T ss_dssp CCCTTSHHHHHHHHHHHHHHTCCCEEEESC-BTTBCTTSHHHHHHHHHHH-HTTCCEEEECCS
T ss_pred ecCccCHHHHHHHHHHHHHcCCeEEEECCC-CCCCCCCcHHHHHHHHHHH-HCCCEEEECCCC
Confidence 343334467788888777889999977653 3221123677777777665 579999998753
No 342
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Probab=84.35 E-value=4.8 Score=33.72 Aligned_cols=94 Identities=12% Similarity=0.027 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
+-.+.++.++++. ++++++=+ ++-+.++++++++..++.|++.+= -|.- +. + .+.++.|.+++++||+
T Consensus 195 ~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE--eP~~--~~--~---~~~~~~l~~~~~iPIa 265 (400)
T 4dxk_A 195 SALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHE--DPIK--MD--S---LSSLTRYAAVSPAPIS 265 (400)
T ss_dssp HHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCSEEE--CCBC--TT--S---GGGHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCEEE--cCCC--cc--c---HHHHHHHHHhCCCCEE
Confidence 3456777787776 78888855 566789999999999999876544 3431 11 1 2457888888999998
Q ss_pred EEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 88 IYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 88 lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
.=. .-.++..+.++.+ .-.++-+|-+
T Consensus 266 ~dE------~~~~~~~~~~~l~~~a~d~v~~d~~ 293 (400)
T 4dxk_A 266 ASE------TLGSRWAFRDLLETGAAGVVMLDIS 293 (400)
T ss_dssp ECT------TCCHHHHHHHHHHTTCCCEEEECTT
T ss_pred ecC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 732 2346778888874 4589999998
No 343
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=84.35 E-value=11 Score=29.71 Aligned_cols=111 Identities=9% Similarity=-0.027 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHhcCC-eEEEeCC------CCc--------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH---
Q psy9711 7 STEEEKLKIISTLRQETKK-TIIAGTY------CES--------TRATIDLTQKAAKAGANAALILCPYYFQKKMTE--- 68 (198)
Q Consensus 7 Lt~~Er~~l~~~~~~~~~~-pvi~gv~------~~~--------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~--- 68 (198)
++.++..++-+.+.+. ++ ++.++.. +.+ .+...+.++.|+++|+..+.+.|......+ .+
T Consensus 50 ~~~~~~~~~~~~l~~~-gl~~~~~h~~~~~nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~-~~~~~ 127 (303)
T 3aal_A 50 IEELNIEAGRQHMQAH-GIEEIVVHAPYIINIGNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAG-VEAGL 127 (303)
T ss_dssp SGGGCHHHHHHHHHHT-TCCEEEEECCTTCCTTCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSC-HHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCceEEEeccccccCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCC-HHHHH
Confidence 3455555555555444 66 4554432 112 233445567888999999888665443222 12
Q ss_pred HHHHHHHHHHHccC-CCCEEEEeCCCCccccc-CHHHHHHHHc-C---CCEEEEeeC
Q psy9711 69 DLIYEHFISVADNS-PIPVIIYNNTFVTNIDI-SVDTLVKLAH-H---ENIRGVKDT 119 (198)
Q Consensus 69 ~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l-~~~~l~~L~~-~---p~i~giK~s 119 (198)
+.+.+.++.+++.. ++.+.+-|.|....... +++.+.+|.+ + |++--+=|.
T Consensus 128 ~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~~t~~~~~~li~~v~~~~~vg~~lD~ 184 (303)
T 3aal_A 128 RQIIRGLNEVLTREQNVQIALETMAGKGSECGRTFEELAYIIDGVAYNDKLSVCFDT 184 (303)
T ss_dssp HHHHHHHHHHCCSSCSCEEEEECCCCCTTEECSSHHHHHHHHHHCTTGGGEEEEEEH
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCCCccCCCHHHHHHHHHhcCCCCCEEEEEEc
Confidence 34456667776554 78888888874322222 8888888873 3 565555554
No 344
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=84.32 E-value=11 Score=28.74 Aligned_cols=135 Identities=18% Similarity=0.115 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
++++.+.+..+.|+.+++--++.. +.++.+.++|+|++.+..-. + ++.+.+..+.+- ..++.+++-=+|.
T Consensus 54 ~~~~~lr~~~~~~~~v~lmv~d~~---~~i~~~~~agad~v~vH~~~----~--~~~~~~~~~~i~-~~g~~igv~~~p~ 123 (228)
T 1h1y_A 54 PVIQSLRKHTKAYLDCHLMVTNPS---DYVEPLAKAGASGFTFHIEV----S--RDNWQELIQSIK-AKGMRPGVSLRPG 123 (228)
T ss_dssp HHHHHHHTTCCSEEEEEEESSCGG---GGHHHHHHHTCSEEEEEGGG----C--TTTHHHHHHHHH-HTTCEEEEEECTT
T ss_pred HHHHHHHhhcCCcEEEEEEecCHH---HHHHHHHHcCCCEEEECCCC----c--ccHHHHHHHHHH-HcCCCEEEEEeCC
Confidence 445555444456777666545543 35666677899999886321 1 211134445553 3466666544553
Q ss_pred CcccccCHHHHHHHHc---CCCEEEE--------eeC----CHHHHHHHHhhcC-CCCeEEEecCh-hhHHHHhhcCCCe
Q psy9711 94 VTNIDISVDTLVKLAH---HENIRGV--------KDT----DNIKLANMANQTK-DLNFSVFAGSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~---~p~i~gi--------K~s----d~~~~~~~~~~~~-~~~~~v~~G~d-~~~~~~l~~G~~G 156 (198)
| +.+.+..+.+ ....+++ +.. ...++.++. +.. +-.+.+-.|-. +........|+|+
T Consensus 124 -t----~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~-~~~~~~pi~v~GGI~~~ni~~~~~aGaD~ 197 (228)
T 1h1y_A 124 -T----PVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALR-KKYPSLDIEVDGGLGPSTIDVAASAGANC 197 (228)
T ss_dssp -S----CGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHH-HHCTTSEEEEESSCSTTTHHHHHHHTCCE
T ss_pred -C----CHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHH-HhcCCCCEEEECCcCHHHHHHHHHcCCCE
Confidence 1 2344555554 3445544 222 234555544 333 23344445554 3455667789999
Q ss_pred EEeccccc
Q psy9711 157 GINALSAV 164 (198)
Q Consensus 157 ~is~~~n~ 164 (198)
++.|.+-+
T Consensus 198 vvvGsai~ 205 (228)
T 1h1y_A 198 IVAGSSIF 205 (228)
T ss_dssp EEESHHHH
T ss_pred EEECHHHH
Confidence 99997633
No 345
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=84.30 E-value=3.3 Score=35.11 Aligned_cols=89 Identities=11% Similarity=0.012 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHHHHh-cCCCEEEEcCCCC----cC-CCCCHHHHHHHHHHHHccC--CCCEEEEeCCCCcccccCHHHHH
Q psy9711 34 ESTRATIDLTQKAAK-AGANAALILCPYY----FQ-KKMTEDLIYEHFISVADNS--PIPVIIYNNTFVTNIDISVDTLV 105 (198)
Q Consensus 34 ~~~~~~i~~a~~a~~-~Gad~v~~~~P~y----~~-~~~~~~~i~~y~~~i~~~~--~~pi~lYn~P~~tg~~l~~~~l~ 105 (198)
.+.++++++++..++ +|+|.+-+....+ +. +...+..-..+.+.|.+.+ ++||+. .|.-.+++...
T Consensus 261 ~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~------~GgI~t~e~Ae 334 (419)
T 3l5a_A 261 YTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIA------SGGINSPESAL 334 (419)
T ss_dssp ECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEE------CSSCCSHHHHH
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEE------ECCCCCHHHHH
Confidence 468999999999999 9999999987653 11 1000100112334444444 589886 45455788888
Q ss_pred HHHcCCCEEEEeeC---CHHHHHHHH
Q psy9711 106 KLAHHENIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 106 ~L~~~p~i~giK~s---d~~~~~~~~ 128 (198)
++.+.-..|++=-. |+....++.
T Consensus 335 ~~L~~aDlVaiGR~~IanPdlv~ki~ 360 (419)
T 3l5a_A 335 DALQHADMVGMSSPFVTEPDFVHKLA 360 (419)
T ss_dssp HHGGGCSEEEESTHHHHCTTHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHCcHHHHHHH
Confidence 87743445554333 777777765
No 346
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=84.30 E-value=13 Score=28.88 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCC--------CCc-------HHHHHHHHHHHHhcCCCEEEE-cCCCC---cCCCC
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTY--------CES-------TRATIDLTQKAAKAGANAALI-LCPYY---FQKKM 66 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~--------~~~-------~~~~i~~a~~a~~~Gad~v~~-~~P~y---~~~~~ 66 (198)
.++.++..++-+.+.+. ++.+.++.+ +.+ .+...+.++.|+++|+..+.+ ..|.+ +....
T Consensus 43 ~~~~~~~~~~~~~l~~~-gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~ 121 (294)
T 3vni_A 43 FYSDIQINELKACAHGN-GITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTI 121 (294)
T ss_dssp GCCHHHHHHHHHHHHHT-TCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCC
T ss_pred CcCHHHHHHHHHHHHHc-CCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCC
Confidence 45777777777766655 666655322 111 234456678888999999874 33322 11111
Q ss_pred CH----HHHHHHHHHHHc---cCCCCEEEEeCCCCccc-ccCHHHHHHHHc---CCCEEEEeeC
Q psy9711 67 TE----DLIYEHFISVAD---NSPIPVIIYNNTFVTNI-DISVDTLVKLAH---HENIRGVKDT 119 (198)
Q Consensus 67 ~~----~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~-~l~~~~l~~L~~---~p~i~giK~s 119 (198)
+. +.+.+.++.+++ ..++.+.+-|.+...+. .-+++.+.+|.+ .||+--.=|.
T Consensus 122 ~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~ 185 (294)
T 3vni_A 122 DKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFENYLINTAQEGVDFVKQVDHNNVKVMLDT 185 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTCSSCCSHHHHHHHHHHHCCTTEEEEEEH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHHHHHHHcCCCCEEEEEEh
Confidence 12 345556666665 44789999997643222 236777777773 4676555554
No 347
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=84.15 E-value=12 Score=28.67 Aligned_cols=119 Identities=19% Similarity=0.113 Sum_probs=71.0
Q ss_pred CCeEEEeCCCCc------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcc-
Q psy9711 24 KKTIIAGTYCES------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN- 96 (198)
Q Consensus 24 ~~pvi~gv~~~~------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg- 96 (198)
+-.+|+.+-+.. ..+..++++.+++.|+.++.+. + . ++.+++.+.+++||+--+.....+
T Consensus 17 ~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~-------~--~----~~i~~ir~~v~~Pvig~~k~~~~~~ 83 (229)
T 3q58_A 17 NGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIE-------G--I----ENLRTVRPHLSVPIIGIIKRDLTGS 83 (229)
T ss_dssp HCCEEEECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEEEE-------S--H----HHHHHHGGGCCSCEEEECBCCCSSC
T ss_pred cCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEEEC-------C--H----HHHHHHHHhcCCCEEEEEeecCCCC
Confidence 445666555544 7889999999999999999872 2 3 567899999999987333221112
Q ss_pred -cccC--HHHHHHHHcC-CCEEEEeeC------CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEE
Q psy9711 97 -IDIS--VDTLVKLAHH-ENIRGVKDT------DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGI 158 (198)
Q Consensus 97 -~~l~--~~~l~~L~~~-p~i~giK~s------d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~i 158 (198)
..++ .+.+.++.+. -.++-+=-+ .+..+.+..++ .+..++.... +....+...|++.+.
T Consensus 84 ~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~---~g~~v~~~v~t~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 84 PVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRL---HGLLAMADCSTVNEGISCHQKGIEFIG 154 (229)
T ss_dssp CCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH---TTCEEEEECSSHHHHHHHHHTTCSEEE
T ss_pred ceEeCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHH---CCCEEEEecCCHHHHHHHHhCCCCEEE
Confidence 2233 3566666643 344443222 33444444422 2455554433 345566788998774
No 348
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=84.03 E-value=12 Score=28.49 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe---
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN--- 90 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn--- 90 (198)
++++.+.+..++|++++-+-.+.++ ++.+.++|||++.+...... + ++.+.+..+..-+...+.+=..+
T Consensus 65 ~~i~~i~~~~~ipv~v~ggI~~~~~----~~~~l~~Gad~V~lg~~~l~--~--p~~~~~~~~~~g~~~~~~l~~~~g~v 136 (244)
T 1vzw_A 65 ALIAEVAQAMDIKVELSGGIRDDDT----LAAALATGCTRVNLGTAALE--T--PEWVAKVIAEHGDKIAVGLDVRGTTL 136 (244)
T ss_dssp HHHHHHHHHCSSEEEEESSCCSHHH----HHHHHHTTCSEEEECHHHHH--C--HHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred HHHHHHHHhcCCcEEEECCcCCHHH----HHHHHHcCCCEEEECchHhh--C--HHHHHHHHHHcCCcEEEEEEccCCEE
Confidence 4566666655999999866555443 56666789999998754332 1 44454555444322211111110
Q ss_pred -CCCCc-ccccCHHHHHHHHcC--CCEE--EEee-----C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhc---C
Q psy9711 91 -NTFVT-NIDISVDTLVKLAHH--ENIR--GVKD-----T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLV---G 153 (198)
Q Consensus 91 -~P~~t-g~~l~~~~l~~L~~~--p~i~--giK~-----s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~---G 153 (198)
.-.+. ...-+.+...++.+. ..|. +++- . |+..+.++.+ ..+-.+..-.|-. +.+...+.. |
T Consensus 137 ~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~-~~~ipvia~GGI~~~~d~~~~~~~~~~G 215 (244)
T 1vzw_A 137 RGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCA-ATDRPVVASGGVSSLDDLRAIAGLVPAG 215 (244)
T ss_dssp CCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHH-TCSSCEEEESCCCSHHHHHHHHTTGGGT
T ss_pred EEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHH-hcCCCEEEECCCCCHHHHHHHHhhccCC
Confidence 00011 011123444555543 3332 2221 1 5667776653 3333333333433 356667778 9
Q ss_pred CCeEEeccccc
Q psy9711 154 CAGGINALSAV 164 (198)
Q Consensus 154 ~~G~is~~~n~ 164 (198)
++|++.|.+-+
T Consensus 216 adgv~vG~al~ 226 (244)
T 1vzw_A 216 VEGAIVGKALY 226 (244)
T ss_dssp EEEEEECHHHH
T ss_pred CceeeeeHHHH
Confidence 99999887633
No 349
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=84.00 E-value=7.3 Score=29.82 Aligned_cols=117 Identities=13% Similarity=0.120 Sum_probs=70.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE---EeCCCCcccccCHHHHHHHH
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII---YNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l---Yn~P~~tg~~l~~~~l~~L~ 108 (198)
|.+.+..-...++.|.+.|+|.+-+..+.....+...+.+.+-.+++.++++ |+.+ ++.| .++.+.+.+++
T Consensus 65 g~~~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~-----~l~~~~~~~~a 138 (225)
T 1mzh_A 65 GLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVIVETP-----YLNEEEIKKAV 138 (225)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEECCGG-----GCCHHHHHHHH
T ss_pred CccchhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEEEeCC-----CCCHHHHHHHH
Confidence 3344565667788999999999987665543211136777777888988887 6543 3333 25665555554
Q ss_pred c---CCCEEEEeeC--------CHHHHHHHHhhcCCCCeEEE-ec-Ch--hhHHHHhhcCCC
Q psy9711 109 H---HENIRGVKDT--------DNIKLANMANQTKDLNFSVF-AG-SA--GYLLSGLLVGCA 155 (198)
Q Consensus 109 ~---~p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~-~G-~d--~~~~~~l~~G~~ 155 (198)
+ --.+-++|-+ ++..+..+. +..++++.|. +| .. ......+..|++
T Consensus 139 ~~a~eaGad~I~tstg~~~gga~~~~i~~v~-~~v~~~ipVia~GGI~t~~da~~~l~aGA~ 199 (225)
T 1mzh_A 139 EICIEAGADFIKTSTGFAPRGTTLEEVRLIK-SSAKGRIKVKASGGIRDLETAISMIEAGAD 199 (225)
T ss_dssp HHHHHHTCSEEECCCSCSSSCCCHHHHHHHH-HHHTTSSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred HHHHHhCCCEEEECCCCCCCCCCHHHHHHHH-HHhCCCCcEEEECCCCCHHHHHHHHHhCch
Confidence 3 3356677755 334455444 3334455554 23 22 245666788999
No 350
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Probab=83.88 E-value=5.2 Score=33.88 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CC
Q psy9711 9 EEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PI 84 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~ 84 (198)
.++-.+.++.++++. ++++.+-+ ++.+.++++++++..++.|++. +--|.. +. + .+.++.|.+++ ++
T Consensus 225 ~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~--iEqP~~--~~--d---~~~~~~l~~~~~~i 295 (441)
T 2hxt_A 225 VQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAW--IEEPTS--PD--D---VLGHAAIRQGITPV 295 (441)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSC--EECCSC--TT--C---HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCe--eeCCCC--HH--H---HHHHHHHHhhCCCC
Confidence 344556677777766 67887754 4556788899998888888774 334431 11 1 34566676666 68
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
||+.=. .-.+++.+.++.+ .-+++-+|-+
T Consensus 296 PIa~dE------~~~~~~~~~~~i~~~~~d~v~ik~~ 326 (441)
T 2hxt_A 296 PVSTGE------HTQNRVVFKQLLQAGAVDLIQIDAA 326 (441)
T ss_dssp CEEECT------TCCSHHHHHHHHHHTCCSEECCCTT
T ss_pred CEEEeC------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 887633 2446778888863 4688888887
No 351
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=83.82 E-value=6.1 Score=30.40 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHH--HHHHHHHHccC-CCCEEEE
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLI--YEHFISVADNS-PIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i--~~y~~~i~~~~-~~pi~lY 89 (198)
.++++...+. +++++.|+.+ ...+..|.+.|+|.+.+ .. .+.+ .+|.+.+.... ++|++-
T Consensus 109 ~~v~~~~~~~-g~~~i~G~~t------~~e~~~A~~~Gad~vk~-------FP--a~~~~G~~~lk~i~~~~~~ipvva- 171 (225)
T 1mxs_A 109 EDILEAGVDS-EIPLLPGIST------PSEIMMGYALGYRRFKL-------FP--AEISGGVAAIKAFGGPFGDIRFCP- 171 (225)
T ss_dssp HHHHHHHHHC-SSCEECEECS------HHHHHHHHTTTCCEEEE-------TT--HHHHTHHHHHHHHHTTTTTCEEEE-
T ss_pred HHHHHHHHHh-CCCEEEeeCC------HHHHHHHHHCCCCEEEE-------cc--CccccCHHHHHHHHhhCCCCeEEE-
Q ss_pred eCCCCcccccCHHHHHHHHcCCCEEEE
Q psy9711 90 NNTFVTNIDISVDTLVKLAHHENIRGV 116 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~~p~i~gi 116 (198)
+| .++++.+.++.+.+++.|+
T Consensus 172 -----iG-GI~~~N~~~~l~~~Ga~~v 192 (225)
T 1mxs_A 172 -----TG-GVNPANVRNYMALPNVMCV 192 (225)
T ss_dssp -----BS-SCCTTTHHHHHHSTTBCCE
T ss_pred -----EC-CCCHHHHHHHHhccCCEEE
No 352
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=83.78 E-value=15 Score=29.41 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCeEEEeCCC----CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC---CC
Q psy9711 16 ISTLRQET---KKTIIAGTYC----ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP---IP 85 (198)
Q Consensus 16 ~~~~~~~~---~~pvi~gv~~----~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~---~p 85 (198)
++.+.+.. +++|..-++. ..++.-+.-++.|.+.|||.+-+..++-...+.+.+.+.+-.+.|.++++ +.
T Consensus 98 V~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lK 177 (288)
T 3oa3_A 98 VSRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILK 177 (288)
T ss_dssp HHHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCce
Q ss_pred EEEEeCCCCcccccCHHHHHHHHcC---CCEEEEeeC-----------CHHHHHHHHhh--cCCCCeEEEecChh--hHH
Q psy9711 86 VIIYNNTFVTNIDISVDTLVKLAHH---ENIRGVKDT-----------DNIKLANMANQ--TKDLNFSVFAGSAG--YLL 147 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l~~L~~~---p~i~giK~s-----------d~~~~~~~~~~--~~~~~~~v~~G~d~--~~~ 147 (198)
+|+ -++ .++.+.+.+.+++ -..-.||-| |...+++.+ + ..+-++..-.|.-. ...
T Consensus 178 VIl-----Et~-~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~~v-~~~g~~v~VKAAGGIrt~edAl 250 (288)
T 3oa3_A 178 VIL-----ETS-QLTADEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSAVC-DSLQSETRVKASGGIRTIEDCV 250 (288)
T ss_dssp EEC-----CGG-GCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHH-HHSSSCCEEEEESSCCSHHHHH
T ss_pred EEE-----ECC-CCCHHHHHHHHHHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHHHH-HHhCCCceEEEeCCCCCHHHHH
Q ss_pred HHhhcCCC--eEEec
Q psy9711 148 SGLLVGCA--GGINA 160 (198)
Q Consensus 148 ~~l~~G~~--G~is~ 160 (198)
..+.+|++ |.-++
T Consensus 251 ~mi~aGA~RiGtS~g 265 (288)
T 3oa3_A 251 KMVRAGAERLGASAG 265 (288)
T ss_dssp HHHHTTCSEEEESCH
T ss_pred HHHHcCCceeehhhH
No 353
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=83.77 E-value=9.7 Score=29.24 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhc---CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 9 EEEKLKIISTLRQET---KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 9 ~~Er~~l~~~~~~~~---~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
..=..++++-+.+++ +.. ++...+..+.+...+..+...+.++|++++.++... . +...++
T Consensus 22 ~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------------~-~~~~~i 86 (277)
T 3hs3_A 22 NRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFTIP--------------P-NFHLNT 86 (277)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCCCC--------------T-TCCCSS
T ss_pred ChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchHHH--------------H-HHhCCC
Confidence 334455566555555 777 777777778888888889999999999999983211 1 235689
Q ss_pred CEEEEeCC
Q psy9711 85 PVIIYNNT 92 (198)
Q Consensus 85 pi~lYn~P 92 (198)
|+++.|.+
T Consensus 87 PvV~~~~~ 94 (277)
T 3hs3_A 87 PLVMYDSA 94 (277)
T ss_dssp CEEEESCC
T ss_pred CEEEEccc
Confidence 99999875
No 354
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=83.75 E-value=11 Score=28.82 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
-..++++-+.+++ +..++......+.+...+..+...+.++|++++.+... .+.+.+.. .+..++|++
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~------~~~~~~~l---~~~~~iPvV 91 (289)
T 1dbq_A 21 YFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY------PEPLLAML---EEYRHIPMV 91 (289)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCC------CHHHHHHH---HHTTTSCEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccC------CHHHHHHH---HhccCCCEE
Confidence 3445555555554 67776665666777778888888889999999976431 23333333 233689999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
++|.+
T Consensus 92 ~~~~~ 96 (289)
T 1dbq_A 92 VMDWG 96 (289)
T ss_dssp EEECS
T ss_pred EEccC
Confidence 99874
No 355
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=83.74 E-value=16 Score=29.50 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=51.2
Q ss_pred CeEEEe-CCCCcHHHHHHHHHHHHhc----CCCEEEEcCCCCcC-C-----C---CCHHHHHHHHHHHHccCCCCEEE--
Q psy9711 25 KTIIAG-TYCESTRATIDLTQKAAKA----GANAALILCPYYFQ-K-----K---MTEDLIYEHFISVADNSPIPVII-- 88 (198)
Q Consensus 25 ~pvi~g-v~~~~~~~~i~~a~~a~~~----Gad~v~~~~P~y~~-~-----~---~~~~~i~~y~~~i~~~~~~pi~l-- 88 (198)
.-||+| ++-.|.+.+++.|++.+++ |...++- ++|.| | + ..-++=++..+++++..++|++-
T Consensus 42 l~vIaGPCsies~e~~~~~A~~lk~~~~~~~~~~v~k--~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev 119 (298)
T 3fs2_A 42 LALIAGPCQMETRDHAFEMAGRLKEMTDKLGIGLVYK--SSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLTDI 119 (298)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEE--CBCCCCC---------CCHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred eEEEEeCCcCCCHHHHHHHHHHHHHHHHHcCCcEEEE--cccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 457777 5556777778888777765 3444433 33332 1 0 11245566777777777777763
Q ss_pred ---------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 ---------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 ---------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
|-+|+ +..-..++++++++...-+++|-.
T Consensus 120 ~D~~~v~~l~~~vd~lkIgA--~~~~n~~LLr~va~~gkPVilK~G 163 (298)
T 3fs2_A 120 HTEEQCAAVAPVVDVLQIPA--FLCRQTDLLIAAARTGRVVNVKKG 163 (298)
T ss_dssp CSHHHHHHHTTTCSEEEECG--GGTTCHHHHHHHHHTTSEEEEECC
T ss_pred CCHHHHHHHHhhCCEEEECc--cccCCHHHHHHHHccCCcEEEeCC
Confidence 12222 112234466666666666777765
No 356
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=83.73 E-value=16 Score=29.64 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 12 KLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAG--ANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
..++++.+.+. +.|+.+.++. ..+.++.++.+.+.| ++.+.+-... .. +....+..+.+.+.++.|+++
T Consensus 83 ~~~~i~~~~~~-g~~v~v~~g~--~~~~~~~a~~~~~~g~~~~~i~i~~~~---G~--~~~~~~~i~~lr~~~~~~~vi- 153 (336)
T 1ypf_A 83 RISFIRDMQSR-GLIASISVGV--KEDEYEFVQQLAAEHLTPEYITIDIAH---GH--SNAVINMIQHIKKHLPESFVI- 153 (336)
T ss_dssp HHHHHHHHHHT-TCCCEEEECC--SHHHHHHHHHHHHTTCCCSEEEEECSS---CC--SHHHHHHHHHHHHHCTTSEEE-
T ss_pred HHHHHHHHHhc-CCeEEEeCCC--CHHHHHHHHHHHhcCCCCCEEEEECCC---CC--cHHHHHHHHHHHHhCCCCEEE-
Confidence 34444444332 6677666543 355678889999999 8988764321 12 666778888888888756555
Q ss_pred eCCCCcccccCHHHHHHHHcCCCEEEEeeC-------C-------------HHHHHHHHhhcCCCCeEEEe--cC--hhh
Q psy9711 90 NNTFVTNIDISVDTLVKLAHHENIRGVKDT-------D-------------NIKLANMANQTKDLNFSVFA--GS--AGY 145 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~~p~i~giK~s-------d-------------~~~~~~~~~~~~~~~~~v~~--G~--d~~ 145 (198)
.|...+++...++.+. .+-+|..+ + ...+.++. +.. ++.|+. |. ...
T Consensus 154 -----~G~v~s~e~A~~a~~a-Gad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~-~~~--~ipVIa~GGI~~g~D 224 (336)
T 1ypf_A 154 -----AGNVGTPEAVRELENA-GADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCA-KAA--SKPIIADGGIRTNGD 224 (336)
T ss_dssp -----EEEECSHHHHHHHHHH-TCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHH-HTC--SSCEEEESCCCSTHH
T ss_pred -----ECCcCCHHHHHHHHHc-CCCEEEEecCCCceeecccccCcCCchhHHHHHHHHH-HHc--CCcEEEeCCCCCHHH
Confidence 2334577877777653 23333332 0 12223333 222 455554 32 235
Q ss_pred HHHHhhcCCCeEEeccccc
Q psy9711 146 LLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 146 ~~~~l~~G~~G~is~~~n~ 164 (198)
...++.+|++++..|.+.+
T Consensus 225 v~kalalGAdaV~iGr~~l 243 (336)
T 1ypf_A 225 VAKSIRFGATMVMIGSLFA 243 (336)
T ss_dssp HHHHHHTTCSEEEESGGGT
T ss_pred HHHHHHcCCCEEEeChhhh
Confidence 7788999999999998866
No 357
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=83.65 E-value=3.6 Score=33.29 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCC-CCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQK-KMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~-~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
+++.+.+. ++||+..+.+ .+.++.+.+.|+|++.+..+..... ...+..-.+.++++.+.+++||+.
T Consensus 110 ~~~~l~~~-gi~vi~~v~t------~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPvia----- 177 (328)
T 2gjl_A 110 HIAEFRRH-GVKVIHKCTA------VRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIA----- 177 (328)
T ss_dssp HHHHHHHT-TCEEEEEESS------HHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEE-----
T ss_pred HHHHHHHc-CCCEEeeCCC------HHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEE-----
Confidence 34444333 7788776642 3446678899999999976543211 100112346778888888999987
Q ss_pred CcccccCHHHHHHHHc
Q psy9711 94 VTNIDISVDTLVKLAH 109 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~ 109 (198)
..|. -+++.+.+..+
T Consensus 178 aGGI-~~~~~v~~al~ 192 (328)
T 2gjl_A 178 SGGF-ADGRGLVAALA 192 (328)
T ss_dssp ESSC-CSHHHHHHHHH
T ss_pred ECCC-CCHHHHHHHHH
Confidence 2232 25666665543
No 358
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=83.59 E-value=4.3 Score=31.55 Aligned_cols=79 Identities=9% Similarity=0.052 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNT 92 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P 92 (198)
++++.+.+. ++|++.|+.+ . .-+..|.++|+|.+-+.| . + .-+=.+|.+++.... ++|++-
T Consensus 118 ~vi~~~~~~-gi~~ipGv~T--p----tEi~~A~~~Gad~vK~FP-a----~--~~gG~~~lkal~~p~p~ip~~p---- 179 (232)
T 4e38_A 118 NTVRACQEI-GIDIVPGVNN--P----STVEAALEMGLTTLKFFP-A----E--ASGGISMVKSLVGPYGDIRLMP---- 179 (232)
T ss_dssp HHHHHHHHH-TCEEECEECS--H----HHHHHHHHTTCCEEEECS-T----T--TTTHHHHHHHHHTTCTTCEEEE----
T ss_pred HHHHHHHHc-CCCEEcCCCC--H----HHHHHHHHcCCCEEEECc-C----c--cccCHHHHHHHHHHhcCCCeee----
Confidence 444444443 8999999873 3 345566889999998743 2 1 111238889988766 588873
Q ss_pred CCcccccCHHHHHHHHcCCCE
Q psy9711 93 FVTNIDISVDTLVKLAHHENI 113 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~~p~i 113 (198)
..|+ +++.+.+..+.+++
T Consensus 180 -tGGI--~~~n~~~~l~aGa~ 197 (232)
T 4e38_A 180 -TGGI--TPSNIDNYLAIPQV 197 (232)
T ss_dssp -BSSC--CTTTHHHHHTSTTB
T ss_pred -EcCC--CHHHHHHHHHCCCe
Confidence 2344 56777777766654
No 359
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=83.54 E-value=9.5 Score=29.31 Aligned_cols=73 Identities=5% Similarity=0.054 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
=..++++-+.+++ +..+++..+..+.+...+..+.+.+.++|++++.++.. + + ..++.+ ...++|++
T Consensus 27 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~---~--~----~~~~~l-~~~~iPvV 96 (292)
T 3k4h_A 27 FFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRE---N--D----RIIQYL-HEQNFPFV 96 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBT---T--C----HHHHHH-HHTTCCEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC---C--h----HHHHHH-HHCCCCEE
Confidence 3455666555555 77777776666667778888888899999999976542 1 2 233333 34689999
Q ss_pred EEeCCC
Q psy9711 88 IYNNTF 93 (198)
Q Consensus 88 lYn~P~ 93 (198)
+.|.+.
T Consensus 97 ~~~~~~ 102 (292)
T 3k4h_A 97 LIGKPY 102 (292)
T ss_dssp EESCCS
T ss_pred EECCCC
Confidence 998753
No 360
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=83.52 E-value=13 Score=28.25 Aligned_cols=117 Identities=9% Similarity=-0.011 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcC-CCEEE-
Q psy9711 39 TIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHH-ENIRG- 115 (198)
Q Consensus 39 ~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~-p~i~g- 115 (198)
..+.++.+.++|+|.+.+..-.-..+. .+.+.+..+.+.+.. ++++++ +. -+++...+..+. ...+|
T Consensus 90 ~~~~i~~~~~~Gad~V~l~~~~~~~~~--~~~~~~~i~~i~~~~~~~~v~~-~~-------~t~~ea~~a~~~Gad~i~~ 159 (234)
T 1yxy_A 90 TMTEVDQLAALNIAVIAMDCTKRDRHD--GLDIASFIRQVKEKYPNQLLMA-DI-------STFDEGLVAHQAGIDFVGT 159 (234)
T ss_dssp SHHHHHHHHTTTCSEEEEECCSSCCTT--CCCHHHHHHHHHHHCTTCEEEE-EC-------SSHHHHHHHHHTTCSEEEC
T ss_pred hHHHHHHHHHcCCCEEEEcccccCCCC--CccHHHHHHHHHHhCCCCeEEE-eC-------CCHHHHHHHHHcCCCEEee
Confidence 456778889999999987643322221 112334444444444 566554 32 133444444332 23332
Q ss_pred ----E----ee-C--CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEEecccccchH
Q psy9711 116 ----V----KD-T--DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGINALSAVLGG 167 (198)
Q Consensus 116 ----i----K~-s--d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~is~~~n~~P~ 167 (198)
+ |. . ++..+.++. +. +-.+..-.|-. +.+...+..|++|++.|.+-+-|+
T Consensus 160 ~v~g~~~~~~~~~~~~~~~i~~~~-~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~p~ 222 (234)
T 1yxy_A 160 TLSGYTPYSRQEAGPDVALIEALC-KA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPK 222 (234)
T ss_dssp TTTTSSTTSCCSSSCCHHHHHHHH-HT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHCHH
T ss_pred eccccCCCCcCCCCCCHHHHHHHH-hC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhChH
Confidence 1 21 1 556666665 32 33343334543 356677889999999998755453
No 361
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=83.52 E-value=7 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=12.8
Q ss_pred eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711 26 TIIAGTYCESTRATIDLTQKAAKAGANAALI 56 (198)
Q Consensus 26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~ 56 (198)
|||.-++-.+.++....++.+.++|||.|=.
T Consensus 122 kvIlet~~l~~e~i~~a~~ia~eaGADfVKT 152 (220)
T 1ub3_A 122 KVILETGYFSPEEIARLAEAAIRGGADFLKT 152 (220)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred eEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 3444333333344344444444444444433
No 362
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=83.50 E-value=2.7 Score=33.16 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
.++.+.+..++||+++-|=.+.++ ++.+.++|||++++..-.+...+ +.+..+-|.
T Consensus 169 ~l~~i~~~~~iPviv~gGI~t~ed----a~~~~~~GAdgViVGSAi~~a~d--p~~~~~~l~ 224 (264)
T 1xm3_A 169 NLSFIIEQAKVPVIVDAGIGSPKD----AAYAMELGADGVLLNTAVSGADD--PVKMARAMK 224 (264)
T ss_dssp HHHHHHHHCSSCBEEESCCCSHHH----HHHHHHTTCSEEEESHHHHTSSS--HHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEeCCCCHHH----HHHHHHcCCCEEEEcHHHhCCCC--HHHHHHHHH
Confidence 556666544999998766544555 44556789999999987655444 544444443
No 363
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=83.45 E-value=18 Score=29.88 Aligned_cols=130 Identities=14% Similarity=0.145 Sum_probs=72.2
Q ss_pred CCeEEEeCCCC-cHHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHH----------------------------
Q psy9711 24 KKTIIAGTYCE-STRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIY---------------------------- 72 (198)
Q Consensus 24 ~~pvi~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~---------------------------- 72 (198)
+.|.+.+..-. +-+.+.++.++|+++|+.++++.- |....- +.++.
T Consensus 121 ~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R---~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 197 (352)
T 3sgz_A 121 EGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNR---RRDKRNQLNLEANILKAALRALKEEKPTQSVPV 197 (352)
T ss_dssp TCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCC---HHHHHHHHHSCHHHHTTCC--------------
T ss_pred CccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcc---hhhhhcCCCCCcccchhhhcccccccccchhhh
Confidence 35556654332 345567888999999999999983 432110 11111
Q ss_pred ---------HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHHHhhc
Q psy9711 73 ---------EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANMANQT 131 (198)
Q Consensus 73 ---------~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~~~~~ 131 (198)
+..+.|.+.+++||++=.. .+++...++.+. .+-||..+ +...+.++.+ .
T Consensus 198 ~~~d~~~~w~~i~~lr~~~~~PvivK~v-------~~~e~A~~a~~~-GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~-a 268 (352)
T 3sgz_A 198 LFPKASFCWNDLSLLQSITRLPIILKGI-------LTKEDAELAMKH-NVQGIVVSNHGGRQLDEVSASIDALREVVA-A 268 (352)
T ss_dssp -CCCTTCCHHHHHHHHHHCCSCEEEEEE-------CSHHHHHHHHHT-TCSEEEECCGGGTSSCSSCCHHHHHHHHHH-H
T ss_pred hccCCCCCHHHHHHHHHhcCCCEEEEec-------CcHHHHHHHHHc-CCCEEEEeCCCCCccCCCccHHHHHHHHHH-H
Confidence 2344555566788877553 345555544432 23333332 1223333332 2
Q ss_pred CCCCeEEEe-c-C--hhhHHHHhhcCCCeEEecccccc
Q psy9711 132 KDLNFSVFA-G-S--AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 132 ~~~~~~v~~-G-~--d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
.++++.|+. | . ......++.+|++++..|.+.++
T Consensus 269 v~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~ 306 (352)
T 3sgz_A 269 VKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW 306 (352)
T ss_dssp HTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred hCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 334566553 2 1 23567888999999999886554
No 364
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=83.44 E-value=6.8 Score=31.00 Aligned_cols=122 Identities=17% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC-C--CEEEEeCCCCcccccCHHHHHHHH
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP-I--PVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~-~--pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
|..+++.-+.-++.|.+.|||.+-+..++-...+.+.+.+.+-.+.|.++++ . .+|+. |+ .|+.+.+.+.+
T Consensus 106 G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlE-----t~-~Lt~eei~~A~ 179 (260)
T 3r12_A 106 GANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIE-----TC-YLDTEEKIAAC 179 (260)
T ss_dssp CCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECC-----GG-GCCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEe-----CC-CCCHHHHHHHH
Confidence 5556677788899999999999999988743211247888888888888874 3 33442 22 56777776655
Q ss_pred c---CCCEEEEeeC-C-------HHHHHHHHhhcCCCCeEE--EecCh--hhHHHHhhcCCC--eEEec
Q psy9711 109 H---HENIRGVKDT-D-------NIKLANMANQTKDLNFSV--FAGSA--GYLLSGLLVGCA--GGINA 160 (198)
Q Consensus 109 ~---~p~i~giK~s-d-------~~~~~~~~~~~~~~~~~v--~~G~d--~~~~~~l~~G~~--G~is~ 160 (198)
+ --..-.||-| - ++.+.-+. +..++++.| -.|.- ......+.+|++ |.-++
T Consensus 180 ~ia~eaGADfVKTSTGf~~~GAT~edV~lm~-~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS~g 247 (260)
T 3r12_A 180 VISKLAGAHFVKTSTGFGTGGATAEDVHLMK-WIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSG 247 (260)
T ss_dssp HHHHHTTCSEEECCCSSSSCCCCHHHHHHHH-HHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred HHHHHhCcCEEEcCCCCCCCCCCHHHHHHHH-HHhCCCceEEEeCCCCCHHHHHHHHHcCCceeecchH
Confidence 4 3578889988 2 23333333 333455554 44433 245677889999 65444
No 365
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=83.28 E-value=4.7 Score=31.74 Aligned_cols=62 Identities=10% Similarity=-0.078 Sum_probs=46.1
Q ss_pred HHHHHHHHHhc----CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC--CcCCCCCHHHHHHHHH
Q psy9711 13 LKIISTLRQET----KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY--YFQKKMTEDLIYEHFI 76 (198)
Q Consensus 13 ~~l~~~~~~~~----~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~--y~~~~~~~~~i~~y~~ 76 (198)
.++++.+.+.+ ++|||++=+-.+.++..++.+.. .|++++++..-. |..+..+-+++.+|-+
T Consensus 190 ~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~--~G~~gvivg~al~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 190 ELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELS--HGKVDLTFGSSLDIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp HHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHH--TTCEEEECCTTBGGGTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhc--CCCCEEEeeCCHHHcCCCCCCHHHHHHHHH
Confidence 46777788888 89999987777788877766542 299999999884 5443134888888765
No 366
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=83.18 E-value=14 Score=28.46 Aligned_cols=30 Identities=17% Similarity=-0.078 Sum_probs=20.9
Q ss_pred CeEEEecChh-hHHHHhhcCCCeEEeccccc
Q psy9711 135 NFSVFAGSAG-YLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 135 ~~~v~~G~d~-~~~~~l~~G~~G~is~~~n~ 164 (198)
.+.|-.|-.. .......+|++.++.|.+-+
T Consensus 175 ~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf 205 (227)
T 1tqx_A 175 NIQVDGGLNIETTEISASHGANIIVAGTSIF 205 (227)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCEEEESHHHH
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEEeHHHh
Confidence 4555566543 55667789999999997633
No 367
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=83.16 E-value=16 Score=29.25 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=30.2
Q ss_pred CeEEEe-CCCCcHHHHHHHHHHHHhc----CCCEEEEcCCCCcC-C-----C---CCHHHHHHHHHHHHccCCCCEE
Q psy9711 25 KTIIAG-TYCESTRATIDLTQKAAKA----GANAALILCPYYFQ-K-----K---MTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 25 ~pvi~g-v~~~~~~~~i~~a~~a~~~----Gad~v~~~~P~y~~-~-----~---~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
.-||+| ++-.|.+.+++.|++.+++ |...++- ++|.| | + ..-++-++..+++++..++|++
T Consensus 18 ~~vIaGPCsie~~~~~~e~A~~lk~~~~~~~~~~v~k--~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~ 92 (288)
T 3tml_A 18 FFLIAGTCVVESEQMTIDTAGRLKEICEKLNVPFIYK--SSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVL 92 (288)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHHHHHHTCCEEEE--CBC--------------CHHHHHHHHHHHHHHHCCCEE
T ss_pred eEEEEeCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEe--cccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEE
Confidence 456666 3334566666666666654 6665543 22222 1 0 0123444556666665566655
No 368
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=83.16 E-value=2.5 Score=35.24 Aligned_cols=93 Identities=5% Similarity=0.074 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc-----
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN----- 81 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~----- 81 (198)
++-.+.++.+++.+ ++++++-+ +..+.++++++++..++.|++ ++--|.- . + .+.++.|.++
T Consensus 185 ~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~--~iE~P~~---~--d---~~~~~~l~~~l~~~g 254 (392)
T 3p3b_A 185 KRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLY--WLEEAFH---E--D---EALYEDLKEWLGQRG 254 (392)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEE--EEECSSS---C--C---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC--EEecCCc---c--c---HHHHHHHHHhhccCC
Confidence 34456777777766 78888755 455789999999998887765 4445542 1 2 3456677777
Q ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 82 SPIPVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
+++||+.=. ..+++.+.++.+ .-+++.+|-+
T Consensus 255 ~~iPIa~dE-------~~~~~~~~~~i~~~~~d~v~ik~~ 287 (392)
T 3p3b_A 255 QNVLIADGE-------GLASPHLIEWATRGRVDVLQYDII 287 (392)
T ss_dssp CCCEEEECC-------SSCCTTHHHHHHTTSCCEECCBTT
T ss_pred CCccEEecC-------CCCHHHHHHHHHcCCCCEEEeCcc
Confidence 889998743 234556777773 4688888887
No 369
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=83.00 E-value=11 Score=29.09 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCH---HHHHHHHHHHHc---cCCCCEEEEeCCCCcccccCHHHHHHHHc-
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTE---DLIYEHFISVAD---NSPIPVIIYNNTFVTNIDISVDTLVKLAH- 109 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~---~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~~l~~~~l~~L~~- 109 (198)
+...+.++.|+++|+..+.+.+........++ +.+.+.++.+++ ..++.+.+.|.|.. ..-+++.+.+|.+
T Consensus 84 ~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~--~~~~~~~~~~l~~~ 161 (286)
T 3dx5_A 84 EKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLETHPNT--LTDTLPSTLELLGE 161 (286)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTS--TTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCCc--CcCCHHHHHHHHHh
Confidence 34455778888999999988765432211113 344555666654 45899999998753 2236777777773
Q ss_pred --CCCEEEEeeC
Q psy9711 110 --HENIRGVKDT 119 (198)
Q Consensus 110 --~p~i~giK~s 119 (198)
.||+--.=|.
T Consensus 162 ~~~~~vg~~~D~ 173 (286)
T 3dx5_A 162 VDHPNLKINLDF 173 (286)
T ss_dssp HCCTTEEEEEEH
T ss_pred cCCCCeEEEecc
Confidence 4776555554
No 370
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=82.96 E-value=14 Score=28.39 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCc------HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcc-
Q psy9711 24 KKTIIAGTYCES------TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTN- 96 (198)
Q Consensus 24 ~~pvi~gv~~~~------~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg- 96 (198)
+-.+|+.+-+.. ..+..++++.+++.|+.++.+. + . ++.+++.+.+++||+=-+.....|
T Consensus 17 ~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~-------~--~----~~i~~ir~~v~~Pvig~~k~d~~~~ 83 (232)
T 3igs_A 17 SGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE-------G--I----DNLRMTRSLVSVPIIGIIKRDLDES 83 (232)
T ss_dssp HCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE-------S--H----HHHHHHHTTCCSCEEEECBCCCSSC
T ss_pred cCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC-------C--H----HHHHHHHHhcCCCEEEEEeecCCCc
Confidence 345666555544 7889999999999999998872 2 3 567899999999986323221122
Q ss_pred -ccc--CHHHHHHHHcC-CCEEEEee-----C-CHHHHHHHHhhcCCCCeEEEecCh--hhHHHHhhcCCCeEE
Q psy9711 97 -IDI--SVDTLVKLAHH-ENIRGVKD-----T-DNIKLANMANQTKDLNFSVFAGSA--GYLLSGLLVGCAGGI 158 (198)
Q Consensus 97 -~~l--~~~~l~~L~~~-p~i~giK~-----s-d~~~~~~~~~~~~~~~~~v~~G~d--~~~~~~l~~G~~G~i 158 (198)
..+ +.+.+.++.+. -.++-+=- . .+..+.+..++ .+..++.... +....+...|++.+.
T Consensus 84 ~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~---~g~~v~~~v~t~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 84 PVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHH---HHLLTMADCSSVDDGLACQRLGADIIG 154 (232)
T ss_dssp CCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHH---TTCEEEEECCSHHHHHHHHHTTCSEEE
T ss_pred ceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHH---CCCEEEEeCCCHHHHHHHHhCCCCEEE
Confidence 223 33566666643 24443322 1 33444443422 2444554332 345566778988664
No 371
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}
Probab=82.84 E-value=3.1 Score=35.24 Aligned_cols=91 Identities=9% Similarity=0.019 Sum_probs=65.9
Q ss_pred HHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+.++.+++++ ++++++=+ ++-+.++++++++..++.|++.+ --|.- +. + .+.++.|.+++++||+.=.
T Consensus 216 e~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~i--EeP~~--~~--d---~~~~~~l~~~~~iPIa~dE 286 (426)
T 4e4f_A 216 KLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWM--EDPTP--AE--N---QACFRLIRQHTVTPIAVGE 286 (426)
T ss_dssp HHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEE--ECCSC--CS--S---GGGGHHHHTTCCSCEEECT
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE--ECCCC--hH--H---HHHHHHHHhcCCCCEEeCC
Confidence 5677777777 88988855 55678999999999999988755 34431 11 1 3456888889999998733
Q ss_pred CCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 91 NTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 91 ~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
.-.+++.+.++.+ .-.++-+|-+
T Consensus 287 ------~~~~~~~~~~~i~~ga~d~v~~k~~ 311 (426)
T 4e4f_A 287 ------VFNSIWDCKQLIEEQLIDYIRTTIT 311 (426)
T ss_dssp ------TCCSGGGTHHHHHTTCCSEECCCTT
T ss_pred ------CcCCHHHHHHHHHcCCCCEEEeCcc
Confidence 2345667778774 4578889987
No 372
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=82.73 E-value=5.2 Score=34.58 Aligned_cols=112 Identities=13% Similarity=0.118 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEE
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRG 115 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~g 115 (198)
.+..+.++.+.++|+|.+.+-... .. ++...+..+.+.+.+ ++||+.-+. .+.+...++.+.. +-+
T Consensus 254 ~~~~~~a~~~~~aG~d~v~i~~~~---G~--~~~~~~~i~~i~~~~~~~pvi~~~v-------~t~~~a~~l~~aG-ad~ 320 (514)
T 1jcn_A 254 EDDKYRLDLLTQAGVDVIVLDSSQ---GN--SVYQIAMVHYIKQKYPHLQVIGGNV-------VTAAQAKNLIDAG-VDG 320 (514)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC---CC--SHHHHHHHHHHHHHCTTCEEEEEEE-------CSHHHHHHHHHHT-CSE
T ss_pred hhhHHHHHHHHHcCCCEEEeeccC---Cc--chhHHHHHHHHHHhCCCCceEeccc-------chHHHHHHHHHcC-CCE
Confidence 346788888999999999985432 11 445566777777777 799987442 5677777776532 233
Q ss_pred EeeC---------------------CHHHHHHHHhhcCCCCeEEEe--cCh--hhHHHHhhcCCCeEEeccccc
Q psy9711 116 VKDT---------------------DNIKLANMANQTKDLNFSVFA--GSA--GYLLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 116 iK~s---------------------d~~~~~~~~~~~~~~~~~v~~--G~d--~~~~~~l~~G~~G~is~~~n~ 164 (198)
|+.+ ....+.++. +.. ++.|+. |.. .....++.+|++++..|.+.+
T Consensus 321 I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~-~~~--~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l 391 (514)
T 1jcn_A 321 LRVGMGCGSICITQEVMACGRPQGTAVYKVAEYA-RRF--GVPIIADGGIQTVGHVVKALALGASTVMMGSLLA 391 (514)
T ss_dssp EEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHH-GGG--TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred EEECCCCCcccccccccCCCccchhHHHHHHHHH-hhC--CCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHH
Confidence 3221 112233333 222 344543 432 357788999999999887644
No 373
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=82.66 E-value=3.7 Score=33.28 Aligned_cols=149 Identities=10% Similarity=0.031 Sum_probs=87.6
Q ss_pred HHHHHHhcCCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC--C---CCcCCC---CCHHHHHHHHHHHHccC-CCC
Q psy9711 16 ISTLRQETKKT-IIAGTYCESTRATIDLTQKAAKAGANAALILC--P---YYFQKK---MTEDLIYEHFISVADNS-PIP 85 (198)
Q Consensus 16 ~~~~~~~~~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~--P---~y~~~~---~~~~~i~~y~~~i~~~~-~~p 85 (198)
++...+.-+.+ ++.++-+..+ ++.++++|++++.+.. - .+..|+ .|-+++..|-+.|++.+ ++|
T Consensus 9 Lr~ll~~~~~~i~~~~a~D~~s------A~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~P 82 (302)
T 3fa4_A 9 LRRALENPDSFIVAPGVYDGLS------ARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTP 82 (302)
T ss_dssp HHHHHHSTTCCEEEEEECSHHH------HHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSC
T ss_pred HHHHHhCCCCeEEEecCcCHHH------HHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCC
Confidence 33343332444 4668876543 5566778999999842 1 112222 35899999999999986 899
Q ss_pred EEEEeCCCCcccccCHHHH----HHHHcCCCEEEEeeC--C-H------------------HHHHHHHhh--cCCCCeEE
Q psy9711 86 VIIYNNTFVTNIDISVDTL----VKLAHHENIRGVKDT--D-N------------------IKLANMANQ--TKDLNFSV 138 (198)
Q Consensus 86 i~lYn~P~~tg~~l~~~~l----~~L~~~p~i~giK~s--d-~------------------~~~~~~~~~--~~~~~~~v 138 (198)
++-|.|.-.| +++.+ +++.+ -.+.|+|.+ . + .+++..... ..+++|.|
T Consensus 83 -viaD~d~Gyg---~~~~v~~tv~~l~~-aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I 157 (302)
T 3fa4_A 83 -VIADADTGYG---GPIMVARTTEQYSR-SGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVV 157 (302)
T ss_dssp -EEEECTTTTS---SHHHHHHHHHHHHH-TTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred -EEEECCCCCC---CHHHHHHHHHHHHH-cCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 5678885433 34333 33333 589999988 1 1 122222211 12578888
Q ss_pred EecChhhHH-----------HHhhcCCCeEEecccccchHHHHHHHHHH
Q psy9711 139 FAGSAGYLL-----------SGLLVGCAGGINALSAVLGGPICELYDLA 176 (198)
Q Consensus 139 ~~G~d~~~~-----------~~l~~G~~G~is~~~n~~P~~~~~l~~~~ 176 (198)
..=.|.... ....+|+|++..-. ---++.+.++.+.+
T Consensus 158 ~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g-~~~~~ei~~~~~~~ 205 (302)
T 3fa4_A 158 IARTDSLQTHGYEESVARLRAARDAGADVGFLEG-ITSREMARQVIQDL 205 (302)
T ss_dssp EEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETT-CCCHHHHHHHHHHT
T ss_pred EEEecccccCCHHHHHHHHHHHHHcCCCEEeecC-CCCHHHHHHHHHHh
Confidence 765554321 23567999885422 12456666776665
No 374
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=82.55 E-value=15 Score=29.82 Aligned_cols=43 Identities=26% Similarity=0.106 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCeEEE-eCCC-CcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 12 KLKIISTLRQETKKTIIA-GTYC-ESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~-gv~~-~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
..++++.+++..++||++ +++. .+ .+.++.+.++|+|++.+..
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~----~~~a~~a~~~Gad~I~v~~ 210 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKLYEAGAAAVDIGG 210 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCC----HHHHHHHHHcCCCEEEEcC
Confidence 356677776666899887 3322 23 4567888999999999974
No 375
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}
Probab=82.37 E-value=8.7 Score=32.12 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=69.8
Q ss_pred HHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.+.++.++++. ++++++=+ ++-+.++ +++++..++.|++.+ --|. .+ ++ .+.++.|.+++++||..=
T Consensus 192 ~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i~~i--EqP~--~~----~d-~~~~~~l~~~~~iPIa~d 261 (400)
T 3mwc_A 192 VEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKCLFH--EQPL--HY----EA-LLDLKELGERIETPICLD 261 (400)
T ss_dssp HHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCCSCE--ESCS--CT----TC-HHHHHHHHHHSSSCEEES
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCCCEE--eCCC--Ch----hh-HHHHHHHHhhCCCCEEEe
Confidence 34566666665 67777754 3345666 888888888886643 3443 12 11 456778888889999873
Q ss_pred eCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHHHhhcCCCCeEEEec
Q psy9711 90 NNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANMANQTKDLNFSVFAG 141 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~~~~~~~~~~~v~~G 141 (198)
. .-.+...+.++.+ ...++-+|-+ .+....++......-++.+..|
T Consensus 262 E------~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~A~~~gi~~~~~ 312 (400)
T 3mwc_A 262 E------SLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAIKIYKIATDNGIKLWGG 312 (400)
T ss_dssp T------TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEC
T ss_pred C------CcCCHHHHHHHHhcCCCCEEEEcchhhCCHHHHHHHHHHHHHcCCEEEec
Confidence 2 2346778888884 4688889887 4544444432111234566655
No 376
>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris}
Probab=82.34 E-value=4.8 Score=33.69 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=82.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCeE-EEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKTI-IAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~pv-i~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+..+||......+++.+ +..+ .+.+++ +.++.+++++.++++|+.++|+- ++...+ .-.+
T Consensus 171 ~qpf~p~~eR~~~~~eai~ra~~eTGe~k~y~~NiTa-~~~em~~ra~~a~e~G~~~~mvd-~~~~G~--------~a~~ 240 (378)
T 3qfw_A 171 DQAFSPFAERAAAVGKAVREANAARGGRTLYAPNISG-TLDDMRRQLGVIRDEGIGAVLVA-PMIVGV--------SNFH 240 (378)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHTCCCEEECBCCS-SHHHHHHHHHHHHHHTCCEEEEC-HHHHCH--------HHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhCCccEEEeecCC-CHHHHHHHHHHHHHcCCCEEEEe-ccccCH--------HHHH
Confidence 345677889987666555555 3344 557776 69999999999999999999985 322222 2234
Q ss_pred HHHccC-CCCEEEEeCCCCcc-cccCH----HHHHHHHcC-----CCEEEEeeC-CHHHHHHH---Hhh---cCCCCeEE
Q psy9711 77 SVADNS-PIPVIIYNNTFVTN-IDISV----DTLVKLAHH-----ENIRGVKDT-DNIKLANM---ANQ---TKDLNFSV 138 (198)
Q Consensus 77 ~i~~~~-~~pi~lYn~P~~tg-~~l~~----~~l~~L~~~-----p~i~giK~s-d~~~~~~~---~~~---~~~~~~~v 138 (198)
.+++.. ++|+..+-. ..| ..++. ..+.||+-. |++.| |.+ +.+..... ..+ ...+-+.|
T Consensus 241 ~l~r~~p~~~lh~HrA--~~gahGi~~~~vl~Kl~RLaG~D~ih~gt~~G-k~~~~~~~~~~~~~~~~q~w~~~~~~~PV 317 (378)
T 3qfw_A 241 AIVKEAAGLVVVAHPA--MAGAAKIAAPLLLGRLFRLFGADATVFPNYGG-RFAYSTASCLALAQAARDPFGKLNACIPT 317 (378)
T ss_dssp HHHTTCTTCEEEECCT--TC---CBCHHHHHTHHHHHHTCSEEEEECCC---CCCCHHHHHHHHHHHHSCCTTCCCCEEE
T ss_pred HHHHhCCCCEEEeCcC--chhhccCcHHHHHHHHHHHhCCCcceeCCccC-CcCCCHHHHHHHHHHhcCcccCCCCeEEe
Confidence 555666 677666543 222 34552 345566622 44444 777 54433222 212 12456888
Q ss_pred EecChh-hHHHH-h-hcCCCeEEecccccc
Q psy9711 139 FAGSAG-YLLSG-L-LVGCAGGINALSAVL 165 (198)
Q Consensus 139 ~~G~d~-~~~~~-l-~~G~~G~is~~~n~~ 165 (198)
.+|.-. ...+. + ..|-|-++...+.++
T Consensus 318 ~SGGih~~~~p~l~~~~G~Dvvl~~GGG~~ 347 (378)
T 3qfw_A 318 PAGGIMLQRVNELLRFYGQDVMLLIGGSLL 347 (378)
T ss_dssp EESSCCGGGHHHHHHHHCSSCEEEC-----
T ss_pred ecCCCCHHHHHHHHHHhCCcEEEecCcccc
Confidence 887543 22232 2 357665554444443
No 377
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=82.30 E-value=11 Score=31.79 Aligned_cols=89 Identities=17% Similarity=0.153 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC-CCC---cC----CCCCHHHHHHHHHHHHccC
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC-PYY---FQ----KKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~-P~y---~~----~~~~~~~i~~y~~~i~~~~ 82 (198)
...++++.+.+..++||++|... +.+.++.+.++|||++.+.. |-. .+ ....+-..+....+.++..
T Consensus 171 ~~~e~I~~ik~~~~i~Vi~g~V~-----t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~ 245 (400)
T 3ffs_A 171 NIIRTLKEIKSKMNIDVIVGNVV-----TEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKF 245 (400)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEC-----SHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhcCCCeEEEeecC-----CHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhc
Confidence 33556666655448899875221 24566788899999999831 110 00 0001333333333444456
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
++||+- .|---+++.+.+....
T Consensus 246 ~IPVIA------~GGI~~~~di~kalal 267 (400)
T 3ffs_A 246 GIPIIA------DGGIRYSGDIGKALAV 267 (400)
T ss_dssp TCCEEE------ESCCCSHHHHHHHHTT
T ss_pred CCCEEe------cCCCCCHHHHHHHHHc
Confidence 889875 3433456666665543
No 378
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=82.03 E-value=3.6 Score=32.73 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=43.6
Q ss_pred HHHHHHHHHhc-C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 13 LKIISTLRQET-K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 13 ~~l~~~~~~~~-~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
.++++.+++.. + +|||++.|=.+.++ +..+.++|+|+|++..-..-..+ +..+.+-|..-.+
T Consensus 165 ~~~L~~i~~~~~~~vPVI~~GGI~tpsD----Aa~AmeLGAdgVlVgSAI~~a~d--P~~ma~af~~Av~ 228 (268)
T 2htm_A 165 RALLELFAREKASLPPVVVDAGLGLPSH----AAEVMELGLDAVLVNTAIAEAQD--PPAMAEAFRLAVE 228 (268)
T ss_dssp HHHHHHHHHTTTTSSCBEEESCCCSHHH----HHHHHHTTCCEEEESHHHHTSSS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCCCHHH----HHHHHHcCCCEEEEChHHhCCCC--HHHHHHHHHHHHH
Confidence 44577777744 7 99999766555554 45677899999999887664444 7777777766433
No 379
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=82.03 E-value=7.4 Score=28.17 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=54.0
Q ss_pred HHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHH-c-CCCEEEEeeC---CH---HHHHHHHhhcCCCCeEEEecChh
Q psy9711 73 EHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLA-H-HENIRGVKDT---DN---IKLANMANQTKDLNFSVFAGSAG 144 (198)
Q Consensus 73 ~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~-~-~p~i~giK~s---d~---~~~~~~~~~~~~~~~~v~~G~d~ 144 (198)
.+...+.+..+.-++. .|.+.+++.+.+.+ + .|.++|+=-+ .. ..+.+.+++...+++.|+.|.-.
T Consensus 36 ~~va~~l~~~G~eVi~------lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 36 KVVARALRDAGFEVVY------TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp HHHHHHHHHTTCEEEC------CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHHHHHCCCEEEE------CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4555566666666553 45678998888777 3 6899999776 22 33333343322235666655321
Q ss_pred ---hHHHHhhcCCCeEEeccccc--chHHHHHHHH
Q psy9711 145 ---YLLSGLLVGCAGGINALSAV--LGGPICELYD 174 (198)
Q Consensus 145 ---~~~~~l~~G~~G~is~~~n~--~P~~~~~l~~ 174 (198)
........|+++++..-++. ..+.+.++++
T Consensus 110 ~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 110 PIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp CHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHH
T ss_pred chhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHH
Confidence 12223478999877544432 3344444443
No 380
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=81.84 E-value=15 Score=28.26 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..+++.....+.+...+..+...+.++|++++.++. .+ .+ . ++.+. ..++|+++
T Consensus 31 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~~--~~-~---~~~l~-~~~iPvV~ 100 (289)
T 2fep_A 31 YSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGN---IT--DE-H---VAEFK-RSPVPIVL 100 (289)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSC---CC--HH-H---HHHHH-HSSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---CC--HH-H---HHHHH-hcCCCEEE
Confidence 445555555554 6666665555667777788888888999999998653 12 32 2 33333 46899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 101 ~~~~ 104 (289)
T 2fep_A 101 AASV 104 (289)
T ss_dssp ESCC
T ss_pred Eccc
Confidence 9874
No 381
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=81.83 E-value=3.6 Score=30.72 Aligned_cols=59 Identities=24% Similarity=0.216 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
+.++.+.+..+.|+++.-+..+.++..+.. +.|+|++++..-.|..+- +.+++.++.+.
T Consensus 164 ~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~----~~G~~~~~vg~a~~~~~~-~~~~~~~~l~~ 222 (237)
T 3cwo_X 164 EMIRFVRPLTTLPIIASGGAGKMEHFLEAF----LAGADAALAASVFHFREI-DVRELKEYLKK 222 (237)
T ss_dssp HHHHHHGGGCCSCEEEESCCCSHHHHHHHH----HHTCSEEEESHHHHTTSS-CHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEecCCCCCHHHHHHHH----HcCcHHHhhhHHHHcCCC-CHHHHHHHHHH
Confidence 344444444489999887776666666543 469999999988876653 48888777653
No 382
>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: c.1.14.1 d.58.9.1 PDB: 3axk_A* 3axm_A* 1rlc_L* 4rub_A* 3rub_L 1ej7_L 1aa1_L* 1aus_L 1rbo_L* 1rco_L* 1rcx_L* 1rxo_L* 1gk8_A* 1ir2_A* 1uzd_A* 1uzh_A* 2v69_A* 1uwa_A* 2v63_A* 2v67_A* ...
Probab=81.78 E-value=5.5 Score=34.38 Aligned_cols=114 Identities=9% Similarity=-0.015 Sum_probs=66.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+-.+||......+++.+ ++--.+.+++.+.++.+++++.++++|+.++|+-. +...++ .-..+.++.+
T Consensus 208 ~qpf~p~~eR~~~v~eai~rA~~eTGe~k~~~~NiTa~~~~eM~~Ra~~a~e~G~~~~mvd~-~~~G~~-a~~~l~~~~r 285 (477)
T 1wdd_A 208 SQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDY-LTGGFT-ANTSLAHYCR 285 (477)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEH-HHHCHH-HHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecCcCCCCHHHHHHHHHHHHHhCCCeEEEec-cccCcH-HHHHHHHhhc
Confidence 345567789987554444443 34446789988899999999999999999998862 221221 0223333333
Q ss_pred HHHccCCCCEEEEeCCC-----CcccccCHHHHHH---HH--c---CCCEEEEeeC-CHHH
Q psy9711 77 SVADNSPIPVIIYNNTF-----VTNIDISVDTLVK---LA--H---HENIRGVKDT-DNIK 123 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~-----~tg~~l~~~~l~~---L~--~---~p~i~giK~s-d~~~ 123 (198)
..++||..+-.-. .....++..++.+ |+ + .++++| |.. +...
T Consensus 286 ----~~~l~lh~HRAghga~~r~~~~Gis~~Vl~Kl~RLaGaD~ih~gt~~G-Kleg~~~~ 341 (477)
T 1wdd_A 286 ----DNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHAGTVVG-KLEGEREM 341 (477)
T ss_dssp ----HHTCEEEEECTTHHHHHSCSSSEECHHHHHHHHHHHCCSEEECCCSSS-SBCCCHHH
T ss_pred ----cCCeEEEecCCCcccccCCCCCCCcHHHHHHHHHHcCCCccccCCcCC-ccCCCHHH
Confidence 3478877764300 0112355555554 44 2 256644 777 5443
No 383
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=81.73 E-value=5.3 Score=33.29 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
.++++.+++..++||+++- .. +.+.++.+.++|+|++.+.
T Consensus 214 ~~~i~~i~~~~~~Pv~vkg-v~----t~e~a~~a~~aGad~I~vs 253 (380)
T 1p4c_A 214 WEALRWLRDLWPHKLLVKG-LL----SAEDADRCIAEGADGVILS 253 (380)
T ss_dssp HHHHHHHHHHCCSEEEEEE-EC----CHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEe-cC----cHHHHHHHHHcCCCEEEEc
Confidence 4677777776699998752 12 2456888999999999994
No 384
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=81.73 E-value=9.6 Score=32.73 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
+.+..++.++.+.++|||.+.+.-- .... +|.++.+.++.+.+..++||-++
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I~l~DT-~G~~--~P~~v~~lv~~l~~~~~~~i~~H 207 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSIALKDM-AGIL--TPYAAEELVSTLKKQVDVELHLH 207 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEET-TSCC--CHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCC-CCCc--CHHHHHHHHHHHHHhcCCeEEEE
Confidence 5788899999999999997766432 2333 38999999999988888898877
No 385
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=81.71 E-value=8.9 Score=30.36 Aligned_cols=75 Identities=7% Similarity=-0.211 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcC--CCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 10 EEKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAG--ANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 10 ~Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~G--ad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
.-..++++-+.+++ +..++......+.+...+..+.+.+.+ +|++++.+.. .+.....++.+. ..++
T Consensus 18 ~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~-------~~~~~~~~~~~~-~~~i 89 (332)
T 2rjo_A 18 PYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND-------SADARVIVEACS-KAGA 89 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS-------HHHHHHHHHHHH-HHTC
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC-------HHHHHHHHHHHH-HCCC
Confidence 33445555555555 666666555566777777888888888 9999987542 333334455543 3589
Q ss_pred CEEEEeCC
Q psy9711 85 PVIIYNNT 92 (198)
Q Consensus 85 pi~lYn~P 92 (198)
|+++.+.+
T Consensus 90 PvV~~~~~ 97 (332)
T 2rjo_A 90 YVTTIWNK 97 (332)
T ss_dssp EEEEESCC
T ss_pred eEEEECCC
Confidence 99999864
No 386
>2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A*
Probab=81.67 E-value=6.6 Score=31.11 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=41.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCc-----CCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKA-AKAGANAALILCPYYF-----QKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~-----~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
|.--++++.-...+++++..+++ ++.|+.++-+.+.++. ....+++.+...|+. ++..++||+++-.
T Consensus 94 r~~~~~~v~p~~~~~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~lpv~iH~~ 166 (327)
T 2dvt_A 94 RFLAFAALPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGE-VEKLDVPFYLHPR 166 (327)
T ss_dssp TEEEEECCCTTSHHHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHH-HHHHTCCEEEECC
T ss_pred ceEEEeecCcCCHHHHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHH-HHHcCCeEEECCC
Confidence 44334566555566678878777 4679999976554431 111224555555555 4467999999853
No 387
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=81.65 E-value=24 Score=30.14 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=79.5
Q ss_pred HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCc
Q psy9711 16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVT 95 (198)
Q Consensus 16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~t 95 (198)
++.+.+++.+||+.----.++- +...+..+|||++++..-. .+ ++++.++++.. ...++.+++==.
T Consensus 100 L~~vr~~v~lPvLrKDFI~d~~----Qi~ea~~~GAD~ILLi~a~---l~--~~~l~~l~~~a-~~lgm~~LvEvh---- 165 (452)
T 1pii_A 100 LPIVSQIAPQPILCKDFIIDPY----QIYLARYYQADACLLMLSV---LD--DDQYRQLAAVA-HSLEMGVLTEVS---- 165 (452)
T ss_dssp HHHHHHHCCSCEEEESCCCSHH----HHHHHHHTTCSEEEEETTT---CC--HHHHHHHHHHH-HHTTCEEEEEEC----
T ss_pred HHHHHHhcCCCeEEEeccCCHH----HHHHHHHcCCCEEEEEccc---CC--HHHHHHHHHHH-HHcCCeEEEEeC----
Confidence 4445555589998643222333 3444888999999999764 33 66666666554 456887776321
Q ss_pred ccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCCCeEEEecCh----hhHHHHhhcCCCeEEecccc
Q psy9711 96 NIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDLNFSVFAGSA----GYLLSGLLVGCAGGINALSA 163 (198)
Q Consensus 96 g~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~~~~v~~G~d----~~~~~~l~~G~~G~is~~~n 163 (198)
+.+.+.+-.+ -+.++|+=.. |+....++.. ..+++..+.+... +........ ++|++-|.+-
T Consensus 166 ----~~eE~~~A~~lga~iIGinnr~L~t~~~dl~~~~~L~~-~ip~~~~vIaEsGI~t~edv~~~~~~-a~avLVGeal 239 (452)
T 1pii_A 166 ----NEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAP-KLGHNVTVISESGINTYAQVRELSHF-ANGFLIGSAL 239 (452)
T ss_dssp ----SHHHHHHHHHTTCSEEEEESEETTTTEECTHHHHHHHH-HHCTTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHH
T ss_pred ----CHHHHHHHHHCCCCEEEEeCCCCCCCCCCHHHHHHHHH-hCCCCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHH
Confidence 3455655544 4678888653 6777777663 3344444543322 234555677 8999888775
Q ss_pred cch
Q psy9711 164 VLG 166 (198)
Q Consensus 164 ~~P 166 (198)
+-+
T Consensus 240 mr~ 242 (452)
T 1pii_A 240 MAH 242 (452)
T ss_dssp HTC
T ss_pred cCC
Confidence 543
No 388
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=81.60 E-value=12 Score=29.11 Aligned_cols=73 Identities=7% Similarity=0.064 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
=..++++-+.+++ +..+++.....+.+...+..+...+.++|++++.++.. + + + .++.+ ...++|++
T Consensus 41 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~--~-~---~~~~l-~~~~iPvV 110 (305)
T 3huu_A 41 FNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLK---D--D-P---IEHLL-NEFKVPYL 110 (305)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBT---T--C-H---HHHHH-HHTTCCEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcC---C--c-H---HHHHH-HHcCCCEE
Confidence 3455666665555 78888777766677778888888899999999986542 1 2 2 23333 34689999
Q ss_pred EEeCCC
Q psy9711 88 IYNNTF 93 (198)
Q Consensus 88 lYn~P~ 93 (198)
+.+.+.
T Consensus 111 ~i~~~~ 116 (305)
T 3huu_A 111 IVGKSL 116 (305)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998754
No 389
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=81.59 E-value=19 Score=29.49 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 10 EEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 10 ~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
....+.++.+.+.. ++||++|... + .+.++.+.++|+|++.+.
T Consensus 146 ~~~~~~i~~lr~~~~~~~vi~g~v~-t----~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 146 EHFVEFVKDVRKRFPQHTIMAGNVV-T----GEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEC-S----HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCC-C----HHHHHHHHHhCCCEEEEC
Confidence 34566777777777 8999986432 2 456788899999999775
No 390
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=81.59 E-value=14 Score=28.46 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhc---CCeEE-EeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 12 KLKIISTLRQET---KKTII-AGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi-~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
..++++-+.+++ +..++ ......+.+...+..+.+.+.|+|++++.+. . .+......+.+. ..++|++
T Consensus 19 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~-----~--~~~~~~~~~~~~-~~~ipvV 90 (303)
T 3d02_A 19 FNRMGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPN-----D--ANVLEPVFKKAR-DAGIVVL 90 (303)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS-----C--HHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC-----C--hHHHHHHHHHHH-HCCCeEE
Confidence 344555554444 66664 3445567777788888888889999998754 1 444444455443 4689999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
.++.+
T Consensus 91 ~~~~~ 95 (303)
T 3d02_A 91 TNESP 95 (303)
T ss_dssp EESCT
T ss_pred EEecC
Confidence 99875
No 391
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=81.59 E-value=4.5 Score=32.83 Aligned_cols=65 Identities=9% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHhcCCeEEE-eCCCC-cHHHHHHHHHHHHh-cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 16 ISTLRQETKKTIIA-GTYCE-STRATIDLTQKAAK-AGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 16 ~~~~~~~~~~pvi~-gv~~~-~~~~~i~~a~~a~~-~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
++.+++.+.+||++ |-... +.++.+++.+.+.+ .|+.++.+---.|.++..++..+.+-...|..
T Consensus 229 f~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~iVH 296 (307)
T 3fok_A 229 MERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAARLVH 296 (307)
T ss_dssp HHHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCCCCHHHHHHHHHHHHH
Confidence 35666666888755 44433 57899999999999 79999999988888544348888888777765
No 392
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=81.54 E-value=4.9 Score=33.91 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEeCCCC-----cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 8 TEEEKLKIISTLRQETKKTIIAGTYCE-----STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~~~pvi~gv~~~-----~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
+..|-+.+++.+.+. ++||++.++-. +-....+.+..+.+.|++++.+-.- .. ++.+..+.+.+.+.+
T Consensus 163 ~~~Eakaa~~a~~~~-~lPv~iS~T~~~~G~l~G~~~~~~~~~l~~~~~~avGvNC~----~g--P~~~~~~l~~l~~~~ 235 (406)
T 1lt8_A 163 HVEEAVWAVETLIAS-GKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASIIGVNCH----FD--PTISLKTVKLMKEGL 235 (406)
T ss_dssp CHHHHHHHHHHHGGG-TSCEEEEECCBTTBCTTCCCHHHHHHHHHTTTCSEEEEESS----SC--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCcEEEEEEECCCCCcCCCcHHHHHHHhhcCCCCEEEecCC----CC--HHHHHHHHHHHHHhh
Confidence 456666676555443 78998875431 1122334444555678998888651 23 888999998888654
Q ss_pred -----CCCEEEEeCCCC---------cc-----cccCHH-----HHHHHH----c-CCCEEEEeeC-CHHHHHHHH
Q psy9711 83 -----PIPVIIYNNTFV---------TN-----IDISVD-----TLVKLA----H-HENIRGVKDT-DNIKLANMA 128 (198)
Q Consensus 83 -----~~pi~lYn~P~~---------tg-----~~l~~~-----~l~~L~----~-~p~i~giK~s-d~~~~~~~~ 128 (198)
+.|+++|-|-+. ++ +.++++ .+.+.+ + --+|+|=-.. ++..++.+.
T Consensus 236 ~~~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga~iIGGCCGTtPeHI~aia 311 (406)
T 1lt8_A 236 EAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIA 311 (406)
T ss_dssp HTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEECCCTTCCHHHHHHHH
T ss_pred hhcCCCccEEEecCCCCCCcCCcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHH
Confidence 789999987421 00 122332 234443 2 2478887777 888877665
No 393
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=81.53 E-value=1.5 Score=35.70 Aligned_cols=73 Identities=16% Similarity=0.008 Sum_probs=45.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 103 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~ 103 (198)
++||++.+. +.+.++.+.+.|+|++.+..+.....+ .+..-.+..+++.+.+++||+. .|---+++.
T Consensus 110 g~~v~~~v~------~~~~a~~~~~~GaD~i~v~g~~~GG~~-g~~~~~~ll~~i~~~~~iPVia------aGGI~~~~~ 176 (332)
T 2z6i_A 110 GIIVIPVVP------SVALAKRMEKIGADAVIAEGMEAGGHI-GKLTTMTLVRQVATAISIPVIA------AGGIADGEG 176 (332)
T ss_dssp TCEEEEEES------SHHHHHHHHHTTCSCEEEECTTSSEEC-CSSCHHHHHHHHHHHCSSCEEE------ESSCCSHHH
T ss_pred CCeEEEEeC------CHHHHHHHHHcCCCEEEEECCCCCCCC-CCccHHHHHHHHHHhcCCCEEE------ECCCCCHHH
Confidence 677776663 244577888999999999765211100 0112346778888888999887 232224677
Q ss_pred HHHHHc
Q psy9711 104 LVKLAH 109 (198)
Q Consensus 104 l~~L~~ 109 (198)
+.+..+
T Consensus 177 ~~~al~ 182 (332)
T 2z6i_A 177 AAAGFM 182 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766554
No 394
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=81.52 E-value=5.1 Score=31.43 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=45.3
Q ss_pred CCeEEEeCCCCcH-------HHHHHHHHHHHhcCCCEEEEc-CCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 24 KKTIIAGTYCEST-------RATIDLTQKAAKAGANAALIL-CPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 24 ~~pvi~gv~~~~~-------~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+.+||+-+-..|. .+..++++.+++.||+++.+. -+.|+..+ . ++.+.+.+++++||..-+
T Consensus 45 ~~~~IaE~k~aSPskg~i~~~~p~~~A~~~~~~GA~~isvlt~~~~f~G~--~----~~l~~i~~~v~lPvl~kd 113 (254)
T 1vc4_A 45 GLSVIAEVKRQSPSEGLIREVDPVEAALAYARGGARAVSVLTEPHRFGGS--L----LDLKRVREAVDLPLLRKD 113 (254)
T ss_dssp SCEEEEEECSCCTTTCCCCSCCHHHHHHHHHHTTCSEEEEECCCSSSCCC--H----HHHHHHHHHCCSCEEEES
T ss_pred CCcEEeeecCCCcCCCcCCCCCHHHHHHHHHHcCCCEEEEecchhhhccC--H----HHHHHHHHhcCCCEEECC
Confidence 5788987643222 356899999999999999996 45566544 4 477888888999987644
No 395
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=81.46 E-value=16 Score=30.21 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILC 58 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~ 58 (198)
+.++.+++..++||+++... + .+.++.+.++|+|++.+.+
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~-~----~e~a~~a~~~Gad~I~vs~ 254 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVI-T----AEDARLAVQHGAAGIIVSN 254 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCC-S----HHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHhCCCEEEEecC-C----HHHHHHHHHcCCCEEEECC
Confidence 34555665559999984332 2 3567888999999999954
No 396
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=81.39 E-value=13 Score=28.82 Aligned_cols=72 Identities=7% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
=..++++-+.+++ +..++......+.+...+..+...+.++||+++.++.. + + .. .+.+ ...++|++
T Consensus 26 f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~---~--~-~~---~~~l-~~~~iPvV 95 (295)
T 3hcw_A 26 FYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKE---N--D-PI---KQML-IDESMPFI 95 (295)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCT---T--C-HH---HHHH-HHTTCCEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCccc---C--h-HH---HHHH-HhCCCCEE
Confidence 3455666665555 77777776666677777888888899999999986532 1 2 22 2333 35689999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.+.+
T Consensus 96 ~i~~~ 100 (295)
T 3hcw_A 96 VIGKP 100 (295)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99864
No 397
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=81.06 E-value=20 Score=28.73 Aligned_cols=30 Identities=30% Similarity=0.235 Sum_probs=16.5
Q ss_pred HHhhcCCCeEEec------------ccccchHHHHHHHHHHH
Q psy9711 148 SGLLVGCAGGINA------------LSAVLGGPICELYDLAK 177 (198)
Q Consensus 148 ~~l~~G~~G~is~------------~~n~~P~~~~~l~~~~~ 177 (198)
.++.+|++|.+-- -..+-|+.+.+|.+.++
T Consensus 229 AAvA~GA~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~ 270 (285)
T 3sz8_A 229 AGIAVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMK 270 (285)
T ss_dssp HHHHHCCSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHH
T ss_pred HHHHhCCCEEEEEeccChhccCCchhhccCHHHHHHHHHHHH
Confidence 4566777776521 12345666666665554
No 398
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=81.02 E-value=15 Score=28.12 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.++++-+.+++ +..++......+.+...+..+...+.++|++++.++. .+ .+ . ++.+.+..++|+++.
T Consensus 37 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~---~~--~~-~---~~~l~~~~~iPvV~~ 107 (296)
T 3brq_A 37 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRF---LS--VD-E---IDDIIDAHSQPIMVL 107 (296)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSS---SC--HH-H---HHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCC---CC--hH-H---HHHHHhcCCCCEEEE
Confidence 34454444444 6677666666677777788888888899999998653 12 32 2 233332268999999
Q ss_pred eCC
Q psy9711 90 NNT 92 (198)
Q Consensus 90 n~P 92 (198)
+.+
T Consensus 108 ~~~ 110 (296)
T 3brq_A 108 NRR 110 (296)
T ss_dssp SCC
T ss_pred ccc
Confidence 864
No 399
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=80.83 E-value=14 Score=28.65 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=46.0
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.++++.+.+++ +..+++..+..+.+...+..+...+.++|++++.+..... .++.+ +.+ ...++|+++.
T Consensus 18 ~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~----~~~~~---~~~-~~~~iPvV~~ 89 (306)
T 2vk2_A 18 AAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG----WEPVL---KEA-KDAEIPVFLL 89 (306)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS----CHHHH---HHH-HHTTCCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh----HHHHH---HHH-HHCCCCEEEe
Confidence 34444444444 7777666566677777788888888899999987643211 12232 333 2468999999
Q ss_pred eCC
Q psy9711 90 NNT 92 (198)
Q Consensus 90 n~P 92 (198)
+.+
T Consensus 90 ~~~ 92 (306)
T 2vk2_A 90 DRS 92 (306)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 400
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=80.71 E-value=6.5 Score=30.25 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCC--CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTY--CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~--~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
=..++++-+.+++ +..++.... ..+.++..+..+.+.+.++|++++.++... .+...++.+ ...++|
T Consensus 21 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-------~~~~~~~~~-~~~~iP 92 (289)
T 3brs_A 21 FWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYE-------KTYDAAKEI-KDAGIK 92 (289)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTT-------TTHHHHTTT-GGGTCE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChH-------HhHHHHHHH-HHCCCc
Confidence 3445555555554 777766544 456777778888888899999999765321 111233333 346899
Q ss_pred EEEEeCC
Q psy9711 86 VIIYNNT 92 (198)
Q Consensus 86 i~lYn~P 92 (198)
++++|.+
T Consensus 93 vV~~~~~ 99 (289)
T 3brs_A 93 LIVIDSG 99 (289)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999874
No 401
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=80.51 E-value=13 Score=29.21 Aligned_cols=72 Identities=7% Similarity=-0.012 Sum_probs=46.4
Q ss_pred HHHHHHHHHhc---CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 13 LKIISTLRQET---KKTIIAG-TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
.++.+-+.+++ +..+++. .+..+.....+.++.+.+.|+|++++.|..... -... .+. +...++|++.
T Consensus 19 ~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~----~~~~---~~~-a~~~gipvV~ 90 (316)
T 1tjy_A 19 TSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG----LCPA---LKR-AMQRGVKILT 90 (316)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST----THHH---HHH-HHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH----HHHH---HHH-HHHCcCEEEE
Confidence 33444444433 7777664 456677888888888889999999987643211 1222 333 2346899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
+|.+
T Consensus 91 ~d~~ 94 (316)
T 1tjy_A 91 WDSD 94 (316)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 9874
No 402
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=80.15 E-value=24 Score=29.11 Aligned_cols=133 Identities=17% Similarity=0.269 Sum_probs=77.4
Q ss_pred CCeEEEeCC-CCcHHHHHHHHHHHHhcCCCEEEEcC--CCC----------------------cC-------CC------
Q psy9711 24 KKTIIAGTY-CESTRATIDLTQKAAKAGANAALILC--PYY----------------------FQ-------KK------ 65 (198)
Q Consensus 24 ~~pvi~gv~-~~~~~~~i~~a~~a~~~Gad~v~~~~--P~y----------------------~~-------~~------ 65 (198)
..|.+.+.. ..+.+.+.+.++.+++.|++++.+.. |.. .. ..
T Consensus 122 ~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~ 201 (370)
T 1gox_A 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLS 201 (370)
T ss_dssp CCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HH
T ss_pred CCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHH
Confidence 345666643 33556678899999999999988863 332 00 00
Q ss_pred ------CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC------------CHHHHHHH
Q psy9711 66 ------MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT------------DNIKLANM 127 (198)
Q Consensus 66 ------~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s------------d~~~~~~~ 127 (198)
.++.-..+..+.+.+.+++|+++=.. .+++...++.+. .+.+|+.+ ++..+.++
T Consensus 202 ~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~-------~~~e~a~~a~~~-Gad~I~vs~~ggr~~~~~~~~~~~l~~v 273 (370)
T 1gox_A 202 SYVAGQIDRSLSWKDVAWLQTITSLPILVKGV-------ITAEDARLAVQH-GAAGIIVSNHGARQLDYVPATIMALEEV 273 (370)
T ss_dssp HHHHHTBCTTCCHHHHHHHHHHCCSCEEEECC-------CSHHHHHHHHHT-TCSEEEECCGGGTSSTTCCCHHHHHHHH
T ss_pred HHHHhhcCccchHHHHHHHHHHhCCCEEEEec-------CCHHHHHHHHHc-CCCEEEECCCCCccCCCcccHHHHHHHH
Confidence 00111124467777778999987332 556777666654 34455543 12223444
Q ss_pred HhhcCCCCeEEEe-c-C--hhhHHHHhhcCCCeEEecccccc
Q psy9711 128 ANQTKDLNFSVFA-G-S--AGYLLSGLLVGCAGGINALSAVL 165 (198)
Q Consensus 128 ~~~~~~~~~~v~~-G-~--d~~~~~~l~~G~~G~is~~~n~~ 165 (198)
. +..++++.|+. | . ......++.+|++++..|.+.++
T Consensus 274 ~-~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 274 V-KAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVF 314 (370)
T ss_dssp H-HHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred H-HHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHH
Confidence 3 23334555543 3 2 23567788899999998876443
No 403
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A
Probab=80.00 E-value=16 Score=30.38 Aligned_cols=92 Identities=17% Similarity=0.123 Sum_probs=64.0
Q ss_pred HHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.+.++.++++. ++++++=+ ++-+.++++++++..++.|+.. +--|.- + ++ .+.++.+.+++++||..=
T Consensus 186 ~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~--iEeP~~--~----~d-~~~~~~l~~~~~iPIa~d 256 (388)
T 3tcs_A 186 EEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFCH--FEEPCP--Y----WE-LAQTKQVTDALDIDVTGG 256 (388)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCCE--EECCSC--T----TC-HHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCeE--EECCCC--c----cC-HHHHHHHHHhcCCCEEcC
Confidence 35677777776 78888755 5567899999999999988763 344531 1 11 345678888899998773
Q ss_pred eCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 90 NNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 90 n~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
. ...+...+.++.+ .-.++-+|-+
T Consensus 257 E------~~~~~~~~~~~i~~~a~d~v~~d~~ 282 (388)
T 3tcs_A 257 E------QDCDLPTWQRMIDMRAVDIVQPDIL 282 (388)
T ss_dssp T------TCCCHHHHHHHHHHTCCSEECCCHH
T ss_pred C------ccCCHHHHHHHHHcCCCCEEEeCcc
Confidence 2 2356778888874 4578888876
No 404
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=79.98 E-value=7.9 Score=31.55 Aligned_cols=157 Identities=10% Similarity=0.035 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc--------CCCCCHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYYF--------QKKMTEDLIYE 73 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~--------~~~~~~~~i~~ 73 (198)
-.+|.+|....++.+.+.+ ++||++=. |-.+..++.+.++...++|++++.+---.+. +.-.++++..+
T Consensus 81 ~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~ 160 (318)
T 1zlp_A 81 GLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHAL 160 (318)
T ss_dssp SCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHH
Confidence 4689999999999999999 99999943 3237899999999999999999998643321 11124788888
Q ss_pred HHHHHHccCC-CCEEEEeCCCCcccccC---HHHHHHHH---cCCCEEEEeeC--CHHHHHHHHhhcCCCCe-EEEe-cC
Q psy9711 74 HFISVADNSP-IPVIIYNNTFVTNIDIS---VDTLVKLA---HHENIRGVKDT--DNIKLANMANQTKDLNF-SVFA-GS 142 (198)
Q Consensus 74 y~~~i~~~~~-~pi~lYn~P~~tg~~l~---~~~l~~L~---~~p~i~giK~s--d~~~~~~~~~~~~~~~~-~v~~-G~ 142 (198)
..+.+.++.. -++++-= ||-.... .+.+.|.. +-.--.-+=++ +.+.+.++.+...-|-+ .+.. |.
T Consensus 161 rI~Aa~~A~~~~~~~I~A---Rtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~l~~P~lan~~~~g~ 237 (318)
T 1zlp_A 161 KIAAAREAIGDSDFFLVA---RTDARAPHGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEGGK 237 (318)
T ss_dssp HHHHHHHHHTTSCCEEEE---EECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHSCSEEEEEECTTSS
T ss_pred HHHHHHHhcccCCcEEEE---eeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHhcCCCEEEEeccCCC
Confidence 8888887653 3444432 3321111 24555554 22211111223 55666665533222211 1222 22
Q ss_pred hh-h-HHHHhhcCCCeEEeccccc
Q psy9711 143 AG-Y-LLSGLLVGCAGGINALSAV 164 (198)
Q Consensus 143 d~-~-~~~~l~~G~~G~is~~~n~ 164 (198)
.. . .-..-.+|..=++-+.+.+
T Consensus 238 ~~~~~~~eL~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 238 TPLHTPEEFKEMGFHLIAHSLTAV 261 (318)
T ss_dssp SCCCCHHHHHHHTCCEEEECSHHH
T ss_pred CCCCCHHHHHHcCCeEEEEchHHH
Confidence 11 1 2334467888666665533
No 405
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=79.95 E-value=11 Score=30.05 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeCCC---CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHc
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGTYC---ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~---~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~ 80 (198)
-.+|.+|-..-.+.+++.+ +.||++-.-. .+.+++++.++...+.||++|-+--- .+..+..+.|.+
T Consensus 70 ~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklEdg---------~~~~~~i~~l~~ 140 (275)
T 3vav_A 70 LPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGG---------EWLAETVRFLVE 140 (275)
T ss_dssp TTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEECC---------GGGHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc---------hhHHHHHHHHHH
Confidence 3588999999999999888 7999996532 57899999999998899999998632 234455556654
Q ss_pred cCCCCEEEE
Q psy9711 81 NSPIPVIIY 89 (198)
Q Consensus 81 ~~~~pi~lY 89 (198)
.++|++-+
T Consensus 141 -~GIpv~gH 148 (275)
T 3vav_A 141 -RAVPVCAH 148 (275)
T ss_dssp -TTCCEEEE
T ss_pred -CCCCEEEe
Confidence 68999975
No 406
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=79.86 E-value=18 Score=28.18 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhc---CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 12 KLKIISTLRQET---KKTIIAG-TYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
..++++-+.+++ +..++.. .+..+.....+..+.+.+.++|++++.+.... .+....+.+. ..++|++
T Consensus 15 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~-------~~~~~~~~~~-~~~iPvV 86 (313)
T 2h3h_A 15 WSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPT-------AVIPTIKKAL-EMGIPVV 86 (313)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTT-------TTHHHHHHHH-HTTCCEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChH-------HHHHHHHHHH-HCCCeEE
Confidence 344454444444 6676654 34556777788888888899999998765321 1122333433 4689999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
.++.+
T Consensus 87 ~~~~~ 91 (313)
T 2h3h_A 87 TLDTD 91 (313)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 99864
No 407
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=79.72 E-value=7.8 Score=33.40 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCC---------cCCCCCHHHHHHHHHHHHc
Q psy9711 12 KLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYY---------FQKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 12 r~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y---------~~~~~~~~~i~~y~~~i~~ 80 (198)
-.+.++.+.+.. ++||++|-.. + .+.++.+.++|||++.+. .|-- .... +-..+.-..+.++
T Consensus 257 ~~~~v~~i~~~~p~~~Vi~g~v~-t----~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p--~~~~l~~v~~~~~ 329 (490)
T 4avf_A 257 VIERVRWVKQTFPDVQVIGGNIA-T----AEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVP--QISAIANVAAALE 329 (490)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEC-S----HHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCceEEEeeeC-c----HHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCcc--HHHHHHHHHHHhc
Confidence 346677777766 7899987322 1 255788999999999983 1111 1111 3333333344444
Q ss_pred cCCCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 81 NSPIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 81 ~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
..++||+. ..|. -+++.+.+..
T Consensus 330 ~~~iPVIa-----~GGI-~~~~di~kal 351 (490)
T 4avf_A 330 GTGVPLIA-----DGGI-RFSGDLAKAM 351 (490)
T ss_dssp TTTCCEEE-----ESCC-CSHHHHHHHH
T ss_pred cCCCcEEE-----eCCC-CCHHHHHHHH
Confidence 56789885 2333 3555555444
No 408
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*
Probab=79.64 E-value=10 Score=30.09 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=56.3
Q ss_pred CCCCHHHHHHH-----HHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 5 FKSTEEEKLKI-----ISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 5 ~~Lt~~Er~~l-----~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
..+|.+||.+. .+...+.. +-+++++.--.+.++++++++..... ++.+=+..+.|...+ ++++++.++
T Consensus 2 ~~~~~~~r~~~~~~~~~~~l~~~m~~k~~~LiVALD~~~~~~al~l~~~l~~~-v~~~KvG~~l~~~~G--~~~~v~~L~ 78 (267)
T 3gdm_A 2 SKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPK-ICLLKTHVDILTDFS--MEGTVKPLK 78 (267)
T ss_dssp -CCCHHHHHHHCSCHHHHHHHHHHHHHTCCEEEECCCSCHHHHHHHHHHHGGG-CSEEEECGGGCSSCC--TTTTHHHHH
T ss_pred CcCCHHHHHhccCChHHHHHHHHHHhhCCCEEEEeCcCCHHHHHHHHHHhCCc-CcEEEECHHHHHhcC--HHHHHHHHH
Confidence 46788888652 23333322 67899998878899999999988654 788888899998766 664666666
Q ss_pred HHHccCCCCEEE
Q psy9711 77 SVADNSPIPVII 88 (198)
Q Consensus 77 ~i~~~~~~pi~l 88 (198)
++++..+.+|++
T Consensus 79 ~l~~~~g~~Ifl 90 (267)
T 3gdm_A 79 ALSAKYNFLLFE 90 (267)
T ss_dssp HHHHHHTCEEEE
T ss_pred HHHhhcCCeEEE
Confidence 665444566553
No 409
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=79.56 E-value=12 Score=29.77 Aligned_cols=73 Identities=7% Similarity=0.021 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHh--cCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAK--AGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~--~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
..++++-+.+++ +..+++..+..+.....+.++.+.+ .++|++++.+.. .. .+ ...+. +...++|+
T Consensus 19 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~---~~--~~---~~~~~-~~~~giPv 89 (350)
T 3h75_A 19 WVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ---YV--AP---QILRL-SQGSGIKL 89 (350)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS---SH--HH---HHHHH-HTTSCCEE
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch---hh--HH---HHHHH-HHhCCCcE
Confidence 445555555555 7777776666778888888888888 599999997521 11 22 23333 34579999
Q ss_pred EEEeCCC
Q psy9711 87 IIYNNTF 93 (198)
Q Consensus 87 ~lYn~P~ 93 (198)
+++|.+.
T Consensus 90 V~~~~~~ 96 (350)
T 3h75_A 90 FIVNSPL 96 (350)
T ss_dssp EEEESCC
T ss_pred EEEcCCC
Confidence 9999754
No 410
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=79.28 E-value=22 Score=28.15 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=57.7
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC---EEEEcCCCCcC-CC--------CCHHHHHHHHHHHHccCCCCEEE--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN---AALILCPYYFQ-KK--------MTEDLIYEHFISVADNSPIPVII-- 88 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad---~v~~~~P~y~~-~~--------~~~~~i~~y~~~i~~~~~~pi~l-- 88 (198)
+.-||+| ++-.+.+.+++.|++.+++|.+ -..+.--+|.+ |- ..-++-++.++++++..++|++-
T Consensus 3 ~l~viaGPCsie~~~~~~~~A~~l~~~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~l~~~~~e~Glp~~te~ 82 (267)
T 2nwr_A 3 KFLVIAGPNAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDI 82 (267)
T ss_dssp CEEEEEECSBCSCHHHHHHHHHHHHHHHHHCTTEEEEEECBSCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred CcEEEEcCCCcCCHHHHHHHHHHHHHHHHhhcCccEEEeeccccCCCCCCCCCcCccHHHHHHHHHHHHHhcCCeEEEec
Confidence 3457777 5666788889989888887532 22233322222 11 11245556677888888888875
Q ss_pred ---------------EeCCCCcccccCHHHHHHHHcCCCEEEEeeC
Q psy9711 89 ---------------YNNTFVTNIDISVDTLVKLAHHENIRGVKDT 119 (198)
Q Consensus 89 ---------------Yn~P~~tg~~l~~~~l~~L~~~p~i~giK~s 119 (198)
+-+|++ ..-..++++++++...-+++|-.
T Consensus 83 ~d~~~~~~l~~~vd~~~IgA~--~~rn~~ll~~~a~~~~PV~lK~G 126 (267)
T 2nwr_A 83 HESWQAEPVAEVADIIQIPAF--LCRQTDLLLAAAKTGRAVNVKKG 126 (267)
T ss_dssp SSGGGHHHHHTTCSEEEECGG--GTTCHHHHHHHHTTTSEEEEECC
T ss_pred CCHHhHHHHHhcCCEEEECcc--cccCHHHHHHHHcCCCcEEEeCC
Confidence 222321 12345678888888888889887
No 411
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=79.09 E-value=3.5 Score=34.19 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCC-------CCCHHHHHHHHHHHHccC
Q psy9711 11 EKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQK-------KMTEDLIYEHFISVADNS 82 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~-------~~~~~~i~~y~~~i~~~~ 82 (198)
...+.++.+.+..++||++|... +.+.++.+.++|+|++.+. .|-.... ...+-..+....++++.+
T Consensus 132 ~~~~~i~~i~~~~~~~Vivg~v~-----t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~ 206 (361)
T 3khj_A 132 NIIRTLKEIKSKMNIDVIVGNVV-----TEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKF 206 (361)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEEC-----SHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEccCC-----CHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhc
Confidence 34456666655558999984332 2455788889999999984 1211100 001333444444445556
Q ss_pred CCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 83 PIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 83 ~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
++||+- .|---+++.+.+..
T Consensus 207 ~iPVIA------~GGI~~~~di~kal 226 (361)
T 3khj_A 207 GIPIIA------DGGIRYSGDIGKAL 226 (361)
T ss_dssp TCCEEE------ESCCCSHHHHHHHH
T ss_pred CCeEEE------ECCCCCHHHHHHHH
Confidence 899885 33223555555444
No 412
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=79.07 E-value=6.6 Score=33.37 Aligned_cols=167 Identities=18% Similarity=0.141 Sum_probs=96.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----CCe-EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----KKT-IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~~p-vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+..+||......+++.+ +.. -.+.++ .+.++.+++++.++++|+.++|+- +....++ -.+
T Consensus 194 ~qpf~p~~eRv~~v~eai~ra~~eTGe~k~y~~NiT-~~~~em~~Ra~~a~e~G~~~~mvd-~~~~G~~--------a~~ 263 (425)
T 2zvi_A 194 ETGLAPFETRIAEGKQILKETYEQTGHKTLYAVNLT-GRTADLKDKARRAAELGADALLFN-VFAYGLD--------VMQ 263 (425)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC-SCGGGHHHHHHHHHHTTCSEEEEC-GGGTCHH--------HHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhCCcceeeCcCC-CCHHHHHHHHHHHHHhCCCeEEEe-eeccChH--------HHH
Confidence 445677899987555554443 334 456888 469999999999999999998875 3322221 123
Q ss_pred HHHcc--CCCCEEEEeCCC-----CcccccCHHHH-HHH---H--c---CCCEEEEeeC-CHHHH---HHHHhh--cCCC
Q psy9711 77 SVADN--SPIPVIIYNNTF-----VTNIDISVDTL-VKL---A--H---HENIRGVKDT-DNIKL---ANMANQ--TKDL 134 (198)
Q Consensus 77 ~i~~~--~~~pi~lYn~P~-----~tg~~l~~~~l-~~L---~--~---~p~i~giK~s-d~~~~---~~~~~~--~~~~ 134 (198)
.+++. .++||..+-.-. .....++..++ .+| + + .++++| |.. +.... .+.+++ ...+
T Consensus 264 ~l~~~~~~~l~lh~HrA~hga~~r~~~~Gi~~~Vll~Kl~RLaGaD~ih~gt~~G-Kl~~~~~~~~~~~~~l~~~~~~k~ 342 (425)
T 2zvi_A 264 GLAEDPEIPVPIMAHPAVSGAFTSSPFYGFSHALLLGKLNRYCGADFSLFPSPYG-SVALPRADALAIHEECVREDAFNQ 342 (425)
T ss_dssp HHHHCTTCCSCEEECCTTGGGGTSCSSSEECHHHHTTHHHHHTTCSEEEECCSSS-SSCCCHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHhCcCCCEEEeccCCcccccCCCCCCCcHHHHHhHHHHHhCCCccccCCcCC-CcCCCHHHHHHHHHHhcCCCCCCC
Confidence 33333 477877664310 01123666665 544 4 2 255544 766 54433 333322 1234
Q ss_pred CeEEEecChh--hHHHHh-hcCCCeEEecccccch---------HHHHHHHHHHHcCC
Q psy9711 135 NFSVFAGSAG--YLLSGL-LVGCAGGINALSAVLG---------GPICELYDLAKAGK 180 (198)
Q Consensus 135 ~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~P---------~~~~~l~~~~~~gd 180 (198)
-+.|.+|.-. .+...+ ..|-|-++...+.++- ..+++-++++.+|.
T Consensus 343 v~PV~SGGih~~~~p~l~~~~G~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~g~ 400 (425)
T 2zvi_A 343 TFAVPSAGIHPGMVPLLMRDFGIDHIINAGGGVHGHPNGAQGGGRAFRAIIDAVLEAQ 400 (425)
T ss_dssp CEEEECSSCCGGGHHHHHHHHTTSBEEECGGGGGGSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEeecCCcchhhHHHHHHHhCCceEEEcCccccCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 5778877543 232322 4687766655554432 46777788888885
No 413
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=78.80 E-value=3.6 Score=32.28 Aligned_cols=133 Identities=16% Similarity=0.117 Sum_probs=76.5
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 14 KIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
.+++.+.+.. ++|+-++.--.+.++ .++.+.++|||.+.+..=. .+.+.+..+.+ +..++-+.+==+|
T Consensus 75 ~~v~~lr~~~p~~~ldvHLmv~~p~~---~i~~~~~aGAd~itvH~Ea-------~~~~~~~i~~i-r~~G~k~Gvalnp 143 (246)
T 3inp_A 75 MVLKALRDYGITAGMDVHLMVKPVDA---LIESFAKAGATSIVFHPEA-------SEHIDRSLQLI-KSFGIQAGLALNP 143 (246)
T ss_dssp HHHHHHHHHTCCSCEEEEEECSSCHH---HHHHHHHHTCSEEEECGGG-------CSCHHHHHHHH-HTTTSEEEEEECT
T ss_pred HHHHHHHHhCCCCeEEEEEeeCCHHH---HHHHHHHcCCCEEEEcccc-------chhHHHHHHHH-HHcCCeEEEEecC
Confidence 5667777777 788888765555554 5666788999998886211 12344444544 3456655555566
Q ss_pred CCcccccCHHHHHHHHc----------CCCEEEEeeC--CHHHHHHHHh--hcCCCCe--EEEecCh-hhHHHHhhcCCC
Q psy9711 93 FVTNIDISVDTLVKLAH----------HENIRGVKDT--DNIKLANMAN--QTKDLNF--SVFAGSA-GYLLSGLLVGCA 155 (198)
Q Consensus 93 ~~tg~~l~~~~l~~L~~----------~p~i~giK~s--d~~~~~~~~~--~~~~~~~--~v~~G~d-~~~~~~l~~G~~ 155 (198)
. |. .+.+..+.+ .|.+-|-|.- .+.+++++.+ ...+.++ .|=.|-. +.......+|++
T Consensus 144 ~-Tp----~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD 218 (246)
T 3inp_A 144 A-TG----IDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVN 218 (246)
T ss_dssp T-CC----SGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCC
T ss_pred C-CC----HHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCC
Confidence 4 22 233333332 3666666655 3455554432 1123344 4444544 356677899999
Q ss_pred eEEeccc
Q psy9711 156 GGINALS 162 (198)
Q Consensus 156 G~is~~~ 162 (198)
.++.|.+
T Consensus 219 ~~V~GSa 225 (246)
T 3inp_A 219 AFVAGSA 225 (246)
T ss_dssp EEEESHH
T ss_pred EEEEehH
Confidence 9999965
No 414
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=78.80 E-value=24 Score=28.36 Aligned_cols=188 Identities=11% Similarity=0.139 Sum_probs=107.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEE-e--CCC------CcHHHH------------------HHHHHHHHhcCCCEE
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIA-G--TYC------ESTRAT------------------IDLTQKAAKAGANAA 54 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~-g--v~~------~~~~~~------------------i~~a~~a~~~Gad~v 54 (198)
++...+|.+|+.++++...+. +++.|= | ++. .+.++. .+-++.+.++|++.+
T Consensus 20 ~~~~~~~~e~k~~i~~~L~~~-Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~~~~~i~~a~~~g~~~v 98 (307)
T 1ydo_A 20 NEPVWIATEDKITWINQLSRT-GLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAALVPNQRGLENALEGGINEA 98 (307)
T ss_dssp GSSSCCCHHHHHHHHHHHHTT-TCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEECCSHHHHHHHHHHTCSEE
T ss_pred CCCCCCCHHHHHHHHHHHHHc-CCCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEEEEeCCHHhHHHHHhCCcCEE
Confidence 456789999999999988765 443321 2 111 012221 334577788899998
Q ss_pred EEcCCCC-----cCCCCCHHHHHHHHHHHHccC---CCCEEE-----EeCCCCcccccCHHHHHHHH----c-CCCEEEE
Q psy9711 55 LILCPYY-----FQKKMTEDLIYEHFISVADNS---PIPVII-----YNNTFVTNIDISVDTLVKLA----H-HENIRGV 116 (198)
Q Consensus 55 ~~~~P~y-----~~~~~~~~~i~~y~~~i~~~~---~~pi~l-----Yn~P~~tg~~l~~~~l~~L~----~-~p~i~gi 116 (198)
-+..+.. .....|.++.++-++++.+.. ++.+.. |..|..+ ..+++.+.+++ + -...+.+
T Consensus 99 ~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~Ga~~i~l 176 (307)
T 1ydo_A 99 CVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEK--DVPIEQVIRLSEALFEFGISELSL 176 (307)
T ss_dssp EEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTB--CCCHHHHHHHHHHHHHHTCSCEEE
T ss_pred EEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCC--CCCHHHHHHHHHHHHhcCCCEEEE
Confidence 8875543 123345777777776666543 566643 3334322 35677666665 3 2679999
Q ss_pred eeC----CHHHHHHHHh---hcCC-CCeEEEecChh------hHHHHhhcCCC---eEEe----------cccccchHHH
Q psy9711 117 KDT----DNIKLANMAN---QTKD-LNFSVFAGSAG------YLLSGLLVGCA---GGIN----------ALSAVLGGPI 169 (198)
Q Consensus 117 K~s----d~~~~~~~~~---~~~~-~~~~v~~G~d~------~~~~~l~~G~~---G~is----------~~~n~~P~~~ 169 (198)
+|+ .+..+.++++ +..+ -.+.+= +.+. ..+.++..|++ +.+. ..+|..-+.+
T Consensus 177 ~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H-~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~graGN~~~E~l 255 (307)
T 1ydo_A 177 GDTIGAANPAQVETVLEALLARFPANQIALH-FHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDI 255 (307)
T ss_dssp ECSSCCCCHHHHHHHHHHHHTTSCGGGEEEE-CBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEECBCBHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHHHhCCCCeEEEE-ECCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCCCChhHHHH
Confidence 999 6766665553 2221 234433 3332 34566788874 4454 3457766777
Q ss_pred HHHHHHHH--c-CCHHHHHHHHHHhhc
Q psy9711 170 CELYDLAK--A-GKWEEAMKLQHRLVK 193 (198)
Q Consensus 170 ~~l~~~~~--~-gd~~~A~~l~~~~~~ 193 (198)
+.+.+... . -|.++-.++.+.+..
T Consensus 256 v~~L~~~g~~t~idl~~L~~~~~~v~~ 282 (307)
T 1ydo_A 256 VYMLEQMDIKTNVKLEKLLSAAKWIEE 282 (307)
T ss_dssp HHHHHHTTCBCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 66665431 1 256666666555543
No 415
>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris}
Probab=78.75 E-value=7 Score=33.47 Aligned_cols=167 Identities=17% Similarity=0.153 Sum_probs=96.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+..+||......+++.+ + +--.+.+. .+.++.+++++.++++|+.++|+- ++...++ -.+
T Consensus 225 ~qpf~p~~eR~~~v~eai~ra~~eTGe~k~y~~NiT-~~~~eM~~Ra~~a~e~G~~~vmvd-~~~~G~~--------a~~ 294 (452)
T 2qyg_A 225 DVDWCPLAERAALLGDACRRASAETGVPKIYLANIT-DEVDRLTELHDVAVANGAGALLIN-AMPVGLS--------AVR 294 (452)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC-CCTTHHHHHHHHHHHTTCCEEEEE-HHHHCHH--------HHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhCCcceecCcCC-CCHHHHHHHHHHHHHhCCCeEEEe-ccccChH--------HHH
Confidence 345677899987554444443 3 44466888 489999999999999999998885 3322221 234
Q ss_pred HHHccCCCCEEEEeCCC-----CcccccCHHHHHHHHc--------CCCEEEEeeC-CHHHHH---HHHhh---cCCCCe
Q psy9711 77 SVADNSPIPVIIYNNTF-----VTNIDISVDTLVKLAH--------HENIRGVKDT-DNIKLA---NMANQ---TKDLNF 136 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~-----~tg~~l~~~~l~~L~~--------~p~i~giK~s-d~~~~~---~~~~~---~~~~~~ 136 (198)
.+++..++||..+-.-. .....++..++.+|.+ .++++| |.. +..... +.++. ...+-+
T Consensus 295 ~la~~~~l~lh~HrA~hga~~r~~~~Gi~~~vl~Kl~RLaGaD~ih~gt~~G-Kleg~~~~~~~~~~~lr~~~~~~k~v~ 373 (452)
T 2qyg_A 295 MLRKHATVPLIAHFPFIAAFSRLANYGIHSRVMTRLQRLAGFDVVIMPGFGP-RMMTPEHEVLDCIRACLEPMGPIKPCL 373 (452)
T ss_dssp HHHTTCCSCEEEECTTHHHHHSCTTSEECHHHHHHHHHHHTCSEEEECCSSG-GGCCCHHHHHHHHHHHHSCBTTBCCCE
T ss_pred HHHhcCCCeEEEccCcceeccCCCCCCCcHHHHHHHHHHcCCCeeecCCcCC-CcCCCHHHHHHHHHHHHhhhcCCCCCC
Confidence 45555678887774300 0112355666655542 155544 766 544333 33322 123558
Q ss_pred EEEecChh--hHHHHh-hcC-CCeEEecccccch---------HHHHHHHHHHHcCC
Q psy9711 137 SVFAGSAG--YLLSGL-LVG-CAGGINALSAVLG---------GPICELYDLAKAGK 180 (198)
Q Consensus 137 ~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~P---------~~~~~l~~~~~~gd 180 (198)
.|.+|.-. .+...+ ..| -|-++...+.++- ..+++-|+++.+|.
T Consensus 374 PV~SGGih~~~~p~l~~~~G~~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~G~ 430 (452)
T 2qyg_A 374 PVPGGSDSAATLENVYRKVGSADFGFVPGRGVFGHPMGPAAGATSIRQAWDAIAAGI 430 (452)
T ss_dssp EEECSSCCTTTHHHHHHHHCSSCCEECCSTTTTTCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccccchhhHHHHHHHhCCCCeEEEeCccccCCCCChHHHHHHHHHHHHHHHcCC
Confidence 88887433 232222 357 5555444333331 46777788888885
No 416
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=78.74 E-value=18 Score=28.61 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..++......+.+...+..+...+.++|++++.++.. .+...+. +.+..++|+++
T Consensus 73 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~------~~~~~~~---l~~~~~iPvV~ 143 (340)
T 1qpz_A 73 FAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEY------PEPLLAM---LEEYRHIPMVV 143 (340)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCC------CHHHHHH---HHTTTTSCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCC------ChHHHHH---HHhhCCCCEEE
Confidence 345555555554 66776665666777777788888889999999976431 2233333 33336899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
.|.+
T Consensus 144 ~~~~ 147 (340)
T 1qpz_A 144 MDWG 147 (340)
T ss_dssp EEES
T ss_pred Eecc
Confidence 9863
No 417
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=78.70 E-value=12 Score=33.65 Aligned_cols=114 Identities=10% Similarity=-0.005 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHh----c--CCeEEEeCC--------CCc-HHHHHHHHHHHHhcCCCEEEEcCCC---Cc---CCC-
Q psy9711 8 TEEEKLKIISTLRQE----T--KKTIIAGTY--------CES-TRATIDLTQKAAKAGANAALILCPY---YF---QKK- 65 (198)
Q Consensus 8 t~~Er~~l~~~~~~~----~--~~pvi~gv~--------~~~-~~~~i~~a~~a~~~Gad~v~~~~P~---y~---~~~- 65 (198)
|.+-|.+++..++++ + +.||.+=++ +.+ .+++++.++.+++ |+|.+-+..-. |. .+.
T Consensus 194 s~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~ 272 (729)
T 1o94_A 194 SLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSR 272 (729)
T ss_dssp SHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTT
T ss_pred CHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCcc
Confidence 456666555544444 4 678877553 233 4689999999988 79987554321 10 000
Q ss_pred CCHHH-HHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CEEEEeeC---CHHHHHHHH
Q psy9711 66 MTEDL-IYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NIRGVKDT---DNIKLANMA 128 (198)
Q Consensus 66 ~~~~~-i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i~giK~s---d~~~~~~~~ 128 (198)
..++. ...+.+.|.+.+++||+. .|.--+++...++.+.. ..+++=-. |+....++.
T Consensus 273 ~~~~~~~~~~~~~i~~~~~~pvi~------~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~ 335 (729)
T 1o94_A 273 FYQQGHTIPWVKLVKQVSKKPVLG------VGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 335 (729)
T ss_dssp TCCTTTTHHHHHHHHTTCSSCEEC------CSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHH
T ss_pred ccCccccHHHHHHHHHHCCCEEEE------eCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHHH
Confidence 00111 245666777788999885 34344677777777433 44444332 555444443
No 418
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=78.66 E-value=11 Score=32.63 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc-CCCCcCCC-------CCHHHHHHHHHHHHcc
Q psy9711 11 EKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALIL-CPYYFQKK-------MTEDLIYEHFISVADN 81 (198)
Q Consensus 11 Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~-~P~y~~~~-------~~~~~i~~y~~~i~~~ 81 (198)
...++++.+.+.. ++||++|-.. + .+.++.+.++|||++.+. .|--...+ ..+-..+.-..+.++.
T Consensus 258 ~~~~~i~~ir~~~p~~~Vi~g~v~-t----~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~ 332 (496)
T 4fxs_A 258 GVLQRIRETRAAYPHLEIIGGNVA-T----AEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANE 332 (496)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEEC-S----HHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHCCCceEEEcccC-c----HHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhcc
Confidence 3456777777777 8899886322 1 245788889999999985 23221110 0133333333444445
Q ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 82 SPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 82 ~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
.++||+. ..|. -+++.+.+...
T Consensus 333 ~~iPVIa-----~GGI-~~~~di~kala 354 (496)
T 4fxs_A 333 YGIPVIA-----DGGI-RFSGDISKAIA 354 (496)
T ss_dssp GTCCEEE-----ESCC-CSHHHHHHHHH
T ss_pred CCCeEEE-----eCCC-CCHHHHHHHHH
Confidence 6899886 2343 35555555443
No 419
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579}
Probab=78.31 E-value=6.3 Score=33.35 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=95.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+..+||......+++.+ + +--.+.+++. +++.+++++.++++|+.++|+- ++...++ -.+
T Consensus 181 ~q~f~p~~eRv~~v~eai~rA~~eTGe~k~y~~NiTa~-~~em~~ra~~a~e~G~~~~mvd-~~~~G~~--------a~~ 250 (414)
T 3fk4_A 181 ENALTPLTKRIVSGKEVLQSVYETYGHKTLYAVNLTGR-TFDLKENAKRAVQAGADILLFN-VFAYGLD--------VLQ 250 (414)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCSC-GGGHHHHHHHHHHHTCSEEEEC-HHHHCHH--------HHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhhCCcceEEeEcCCC-HHHHHHHHHHHHHcCCCEEEEc-ccccChH--------HHH
Confidence 445677899988766666655 3 3346788885 6999999999999999998875 3322222 233
Q ss_pred HHHcc--CCCCEEEEeCCCCcc-------cccCHHH----HHHHH--cC---CCEEEEeeC-CH---HHHHHHHhhc---
Q psy9711 77 SVADN--SPIPVIIYNNTFVTN-------IDISVDT----LVKLA--HH---ENIRGVKDT-DN---IKLANMANQT--- 131 (198)
Q Consensus 77 ~i~~~--~~~pi~lYn~P~~tg-------~~l~~~~----l~~L~--~~---p~i~giK~s-d~---~~~~~~~~~~--- 131 (198)
.+++. .++||..+-. ..| ..++..+ +.||+ ++ |+++| |.. +. ..+....++.
T Consensus 251 ~l~r~~~~~~~lh~HrA--~~ga~~r~~~~Gi~~~vll~Kl~RlaG~D~ih~gt~~G-K~~~~~~~~~~~~~~~~q~w~~ 327 (414)
T 3fk4_A 251 SLAEDDEIPVPIMAHPA--VSGAYSASKLYGVSSPLLLGKLLRYAGADFSLFPSPYG-SVALEKEEALAISKYLTEDDAS 327 (414)
T ss_dssp HHHHCTTSCSCEEECCT--TTHHHHSCSSSSBCHHHHHTHHHHHHTCSEEEEECCC-------CHHHHHHHHHHHSCCTT
T ss_pred HHHhcCCCCceEEeccC--cccccccCCCCCccHHHHHHHHHHhhCCCccccCCccC-CcCCCHHHHHHHHHHHcCcccc
Confidence 44444 4788777633 221 2344544 45666 31 55544 555 32 2233333221
Q ss_pred CCCCeEEEecChh--hHHHHh-hcCCCeEEecccccc--h-------HHHHHHHHHHHcCC
Q psy9711 132 KDLNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVL--G-------GPICELYDLAKAGK 180 (198)
Q Consensus 132 ~~~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~--P-------~~~~~l~~~~~~gd 180 (198)
..+-+.|.+|.-+ .+...+ ..|-|-++...+.++ | ..+++-|+++.+|.
T Consensus 328 ~~~~~PV~SGGih~~~~p~~~~~~G~D~vl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~g~ 388 (414)
T 3fk4_A 328 FKKSFSVPSAGIHPGFVPFIVRDFGKDVVINAGGGIHGHPNGAQGGGKAFRTAIDATLQNK 388 (414)
T ss_dssp SCCCEEEEESSCCGGGHHHHHHHHCSSBEEECGGGGGGSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCceeecCCCCCHhHHHHHHHHhCCcEEEEcCCcccCCCCChHHHHHHHHHHHHHHhcCC
Confidence 2356888887654 233332 468776665555553 2 56677788888774
No 420
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=78.30 E-value=5 Score=31.14 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 42 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 42 ~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
..+.+.+.|+|++++.-- .+.+.+.+.+..+.|-+ +++|++++
T Consensus 23 ~~~~~~~~GtD~i~vGGs----~gvt~~~~~~~v~~ik~-~~~Pvvlf 65 (228)
T 3vzx_A 23 QLEILCESGTDAVIIGGS----DGVTEDNVLRMMSKVRR-FLVPCVLE 65 (228)
T ss_dssp HHHHHHTSSCSEEEECCC----SCCCHHHHHHHHHHHTT-SSSCEEEE
T ss_pred HHHHHHHcCCCEEEECCc----CCCCHHHHHHHHHHhhc-cCCCEEEe
Confidence 344457899999999862 22359999999999988 99999986
No 421
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=78.09 E-value=21 Score=27.46 Aligned_cols=72 Identities=10% Similarity=0.210 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..++......+.....+..+...+.++|++++.++.. + .+ ..++.+ ...++|+++
T Consensus 35 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~---~--~~---~~~~~~-~~~~iPvV~ 105 (293)
T 2iks_A 35 YTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP---P--EH---PFYQRW-ANDPFPIVA 105 (293)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC---T--TC---HHHHTT-TTSSSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---C--cH---HHHHHH-HhCCCCEEE
Confidence 445555555554 66666655555677777788888888999999976532 1 21 123333 346899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
.|.+
T Consensus 106 ~~~~ 109 (293)
T 2iks_A 106 LDRA 109 (293)
T ss_dssp EESC
T ss_pred ECCc
Confidence 9864
No 422
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=78.08 E-value=17 Score=28.08 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCC---cHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHc
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCE---STRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~---~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~ 80 (198)
..++++|.++++.+.+. +.+=++=+--. ..+..-++.+.+.+.|.. ++++.-.|. .|+ .+++.+.|+...+
T Consensus 79 ~~~~~~~~~ll~~~~~~-~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~k-vI~S~Hdf~~tp~--~~el~~~~~~~~~ 153 (238)
T 1sfl_A 79 QFTNDSYLNLISDLANI-NGIDMIDIEWQADIDIEKHQRIITHLQQYNKE-VIISHHNFESTPP--LDELQFIFFKMQK 153 (238)
T ss_dssp CCCHHHHHHHHHHGGGC-TTCCEEEEECCTTSCHHHHHHHHHHHHHTTCE-EEEEEEESSCCCC--HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh-CCCCEEEEEccCCCChHHHHHHHHHHHhcCCE-EEEEecCCCCCcC--HHHHHHHHHHHHH
Confidence 67899999999888754 11112222111 122223344444455544 333333332 344 6788888877654
No 423
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=77.84 E-value=18 Score=27.80 Aligned_cols=71 Identities=4% Similarity=-0.031 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEE
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVI 87 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~ 87 (198)
=..++++-+.+++ +..+++.....+.+...+..+...+.++|++++.++.. .++. ++.+. .++|++
T Consensus 22 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~------~~~~---~~~l~--~~iPvV 90 (285)
T 3c3k_A 22 FCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALS------ELPE---LQNII--GAFPWV 90 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGG------GHHH---HHHHH--TTSSEE
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC------ChHH---HHHHh--cCCCEE
Confidence 3445555555554 66666655555666677778888888999999976432 2222 33443 689999
Q ss_pred EEeCC
Q psy9711 88 IYNNT 92 (198)
Q Consensus 88 lYn~P 92 (198)
+.|.+
T Consensus 91 ~~~~~ 95 (285)
T 3c3k_A 91 QCAEY 95 (285)
T ss_dssp EESSC
T ss_pred EEccc
Confidence 99864
No 424
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=77.80 E-value=11 Score=29.05 Aligned_cols=74 Identities=4% Similarity=-0.081 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhc---CCeEEEeC--CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCC
Q psy9711 11 EKLKIISTLRQET---KKTIIAGT--YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIP 85 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv--~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~p 85 (198)
=..++++-+.+++ +..++... +..+.+...+..+...+.++|++++.++.. . . ..+. ++.+. ..++|
T Consensus 15 f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~-~-~--~~~~---~~~~~-~~~iP 86 (288)
T 1gud_A 15 FWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSS-V-N--LVMP---VARAW-KKGIY 86 (288)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSS-S-T--THHH---HHHHH-HTTCE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCh-H-H--HHHH---HHHHH-HCCCe
Confidence 3445555555554 66666554 555677777778888888999999976531 1 1 1222 33333 36899
Q ss_pred EEEEeCC
Q psy9711 86 VIIYNNT 92 (198)
Q Consensus 86 i~lYn~P 92 (198)
+++.|.+
T Consensus 87 vV~~~~~ 93 (288)
T 1gud_A 87 LVNLDEK 93 (288)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999874
No 425
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=77.69 E-value=17 Score=28.75 Aligned_cols=68 Identities=10% Similarity=0.101 Sum_probs=46.6
Q ss_pred HHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
++++-+.+++ +..+++..+..+.+...+..+...+.++||+++.++.. + + . ..+. +...++|+++.+
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~---~--~-~---~~~~-l~~~~iPvV~~~ 148 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH---A--E-P---FERI-LSQHALPVVYMM 148 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC---C--T-T---HHHH-HHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC---C--H-H---HHHH-HhcCCCCEEEEe
Confidence 3444444444 77777777777788888888988999999999987532 1 2 1 2222 345689999987
Q ss_pred C
Q psy9711 91 N 91 (198)
Q Consensus 91 ~ 91 (198)
.
T Consensus 149 ~ 149 (339)
T 3h5o_A 149 D 149 (339)
T ss_dssp S
T ss_pred e
Confidence 5
No 426
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Probab=77.67 E-value=7.6 Score=32.84 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=95.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-----C-CeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET-----K-KTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~-----~-~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+-.+||......+++.+ + +--.+.++ .+.++.+++++.++++|+.++|+- ++...++ . .+
T Consensus 180 ~qpf~p~~eR~~~v~eai~ra~~eTGe~k~~~~NiT-~~~~em~~Ra~~a~e~G~~~~mvd-~~~~G~~----a----~~ 249 (413)
T 2oem_A 180 DSELLPFEKRITEGKAALQEVYEQTGKRTLYAVNLT-GKTFALKDKAKRAAELGADVLLFN-VFAYGLD----V----LQ 249 (413)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHSCCCEEEEECC-SCGGGHHHHHHHHHHTTCSEEEEC-GGGSCHH----H----HH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCcceeeCcCC-CCHHHHHHHHHHHHHhCCCeEEEe-eeccChH----H----HH
Confidence 445677899987554444443 3 44466888 499999999999999999998885 3332222 1 23
Q ss_pred HHHcc--CCCCEEEEeCCC-----CcccccCHHHH----HHHH--c---CCCEEEEeeC-CHHHH---HHHHhhc---CC
Q psy9711 77 SVADN--SPIPVIIYNNTF-----VTNIDISVDTL----VKLA--H---HENIRGVKDT-DNIKL---ANMANQT---KD 133 (198)
Q Consensus 77 ~i~~~--~~~pi~lYn~P~-----~tg~~l~~~~l----~~L~--~---~p~i~giK~s-d~~~~---~~~~~~~---~~ 133 (198)
.+++. .++|+..+-.-. .....++..++ .||+ + .++++| |.. +.... .+.++.. ..
T Consensus 250 ~l~~~~~~~~~lh~HrA~hg~~~r~~~~Gi~~~vll~Kl~Rl~G~D~ih~gt~~G-K~~g~~~~~~~~~~~~~~~w~~~~ 328 (413)
T 2oem_A 250 ALREDEEIAVPIMAHPAFSGAVTPSEFYGVAPSLWLGKLLRLAGADFVLFPSPYG-SVALEREQALGIARALTDDQEPFA 328 (413)
T ss_dssp HHHHCTTTCCCEEECCTTGGGTSSCSSSSBCHHHHTTHHHHHHTCSEEEEECSSS-SSCCCHHHHHHHHHHHHCTTSSSC
T ss_pred HHHhhccCCceEEeccccceeeccCCCCCcchHHHHHHHHHHcCCCeeecCCcCC-CcCCCHHHHHHHHHHHhccccCCC
Confidence 33443 577776664310 01123555555 4555 2 145544 666 54433 3333221 24
Q ss_pred CCeEEEecChh--hHHHHh-hcCCCeEEecccccch---------HHHHHHHHHHHcCC
Q psy9711 134 LNFSVFAGSAG--YLLSGL-LVGCAGGINALSAVLG---------GPICELYDLAKAGK 180 (198)
Q Consensus 134 ~~~~v~~G~d~--~~~~~l-~~G~~G~is~~~n~~P---------~~~~~l~~~~~~gd 180 (198)
+-+.|.+|.-+ .+...+ ..|-|-++...+.++- ..+++-++++.+|.
T Consensus 329 ~~~PV~SGGih~~~~p~~~~~~G~D~vl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~g~ 387 (413)
T 2oem_A 329 RAFPVPSAGIHPGLVPLIIRDFGLDTIVNAGGGIHGHPDGAIGGGRAFRAAIDAVLAGR 387 (413)
T ss_dssp CCEEEEESSCCGGGHHHHHHHHCSSSEEEESHHHHTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCCCccCcchhhHHHHHHHhCCceEEEeCccccCCCCchHHHHHHHHHHHHHHHcCC
Confidence 56888887543 232322 4676665544444431 46677788887774
No 427
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=77.36 E-value=16 Score=28.06 Aligned_cols=72 Identities=8% Similarity=0.091 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHH---HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATID---LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~---~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
=..++++-+.+++ +..+++.....+.+...+ ..+...+.++|++++.++.. .++. ++.+. ..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~---~~~l~-~~~i 91 (290)
T 2rgy_A 22 YYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDL------HDED---LDELH-RMHP 91 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSS------CHHH---HHHHH-HHCS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCC------CHHH---HHHHh-hcCC
Confidence 3445555555554 666666555445555555 67777788999999976532 2222 33333 3589
Q ss_pred CEEEEeCC
Q psy9711 85 PVIIYNNT 92 (198)
Q Consensus 85 pi~lYn~P 92 (198)
|+++.|.+
T Consensus 92 PvV~~~~~ 99 (290)
T 2rgy_A 92 KMVFLNRA 99 (290)
T ss_dssp SEEEESSC
T ss_pred CEEEEccc
Confidence 99999874
No 428
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=77.28 E-value=3.6 Score=31.84 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHc---cCCCCEEEE
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVAD---NSPIPVIIY 89 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~---~~~~pi~lY 89 (198)
|..+.+++.++++.|.+.|.+.+.+++-... .+..+.+.+..|++.+-+ ....+|-|+
T Consensus 19 g~~~~e~~~e~i~~A~~~Gi~~i~~TdH~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~ 80 (247)
T 2wje_A 19 GPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFLQVREIAKEVASDLVIA 80 (247)
T ss_dssp SCSSHHHHHHHHHHHHHTTEEEEECCCEEBTTTBCCCHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 4556789999999999999999998864321 111237889999988865 333455443
No 429
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=77.27 E-value=3.8 Score=31.49 Aligned_cols=62 Identities=8% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHH-HhcC-CCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKA-AKAG-ANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a-~~~G-ad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
.++++.+.+.+++||+++-|-.+.+++.++.+.. +..| +|++++..-.|..+- +.+++.+|+
T Consensus 177 ~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~-~~~~~~~~~ 240 (241)
T 1qo2_A 177 FSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGIL-TVEVMKRYA 240 (241)
T ss_dssp HHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSS-CHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCC-CHHHHHHHh
Confidence 3455556555599999976655566666654431 1238 999999987775542 477777764
No 430
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=77.25 E-value=26 Score=28.03 Aligned_cols=142 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcH---------HHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHHHHHHHHHccC
Q psy9711 14 KIISTLRQETKKTIIAGTYCEST---------RATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNS 82 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~---------~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~~y~~~i~~~~ 82 (198)
.+++.+++...+||.+=+-...- +...+.++.++++|+|++++.. |-..-.. +..+.+.+..
T Consensus 79 g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~-------~~~~~Li~~a 151 (287)
T 3iwp_A 79 GVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDK-------ELCMSLMAIC 151 (287)
T ss_dssp HHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCH-------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCH-------HHHHHHHHHc
Q ss_pred -CCCEEEEeCCCCcccccCHHHHHHHHcCCCEEEEeeC--------CHHHHHHHHhhcCCCCeEEEecCh---hhHHHHh
Q psy9711 83 -PIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT--------DNIKLANMANQTKDLNFSVFAGSA---GYLLSGL 150 (198)
Q Consensus 83 -~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i~giK~s--------d~~~~~~~~~~~~~~~~~v~~G~d---~~~~~~l 150 (198)
++|+.++..-..+.. +.+.+..|.++ .+.-|=-| ....+++++ +..+.++.|+.|.. ..+...+
T Consensus 152 ~~l~vTFHRAFD~~~d--~~~Ale~Li~l-GvdrILTSG~~~~a~~Gl~~Lk~Lv-~~a~~rI~ImaGGGV~~~Ni~~l~ 227 (287)
T 3iwp_A 152 RPLPVTFHRAFDMVHD--PMAALETLLTL-GFERVLTSGCDSSALEGLPLIKRLI-EQAKGRIVVMPGGGITDRNLQRIL 227 (287)
T ss_dssp TTSCEEECGGGGGCSC--HHHHHHHHHHH-TCSEEEECTTSSSTTTTHHHHHHHH-HHHTTSSEEEECTTCCTTTHHHHH
T ss_pred CCCcEEEECchhccCC--HHHHHHHHHHc-CCCEEECCCCCCChHHhHHHHHHHH-HHhCCCCEEEECCCcCHHHHHHHH
Q ss_pred h-cCCCeEEecccccch
Q psy9711 151 L-VGCAGGINALSAVLG 166 (198)
Q Consensus 151 ~-~G~~G~is~~~n~~P 166 (198)
. .|++-+-++.....|
T Consensus 228 ~~tG~~~~H~S~~~~~~ 244 (287)
T 3iwp_A 228 EGSGATEFHCSARSTRD 244 (287)
T ss_dssp HHHCCSEEEECCEEEEC
T ss_pred HhhCCCEEeECcCcccC
No 431
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=77.08 E-value=7.4 Score=28.91 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=38.4
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD 102 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~ 102 (198)
++|+++|+.+ .. .++.+.++|+|.+-+.| . +..-.++.+++.+.. ++|++. ..|.+ ++
T Consensus 104 g~~vi~g~~t--~~----e~~~a~~~Gad~vk~~~------~--~~~g~~~~~~l~~~~~~~pvia-----~GGI~--~~ 162 (205)
T 1wa3_A 104 GVFYMPGVMT--PT----ELVKAMKLGHTILKLFP------G--EVVGPQFVKAMKGPFPNVKFVP-----TGGVN--LD 162 (205)
T ss_dssp TCEEECEECS--HH----HHHHHHHTTCCEEEETT------H--HHHHHHHHHHHHTTCTTCEEEE-----BSSCC--TT
T ss_pred CCcEECCcCC--HH----HHHHHHHcCCCEEEEcC------c--cccCHHHHHHHHHhCCCCcEEE-----cCCCC--HH
Confidence 6777776643 22 25567788888776543 1 222346777777766 577765 33443 45
Q ss_pred HHHHHHc
Q psy9711 103 TLVKLAH 109 (198)
Q Consensus 103 ~l~~L~~ 109 (198)
.+.++.+
T Consensus 163 ~~~~~~~ 169 (205)
T 1wa3_A 163 NVCEWFK 169 (205)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 432
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=76.76 E-value=2 Score=34.93 Aligned_cols=96 Identities=11% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCC
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSP 83 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~ 83 (198)
.+|+..+-+++++.+.+.. .+|- +...+.+.+....+.|++.+...++-..|.-.+.. ...+..+.+.+++..+
T Consensus 8 ~~~~~n~~~~ll~~A~~~~yAV~A---fNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~--g~~~~~~~~~~A~~~~ 82 (306)
T 3pm6_A 8 PSLKSNRALPLLTFARTHSFAIPA---ICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYA--DSLLVRTAASACRAAS 82 (306)
T ss_dssp --CTTCSSHHHHHHHHHTTCCEEE---EECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHH--TTHHHHHHHHHHHHCS
T ss_pred CCCCccHHHHHHHHHHHCCcEEEE---EeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhc--cHHHHHHHHHHHHHCC
Confidence 4567777788888887764 4443 34456777778888899999998887777533322 3357788889999999
Q ss_pred CCEEEEeCCCCcccccCHHHHHHHHcC
Q psy9711 84 IPVIIYNNTFVTNIDISVDTLVKLAHH 110 (198)
Q Consensus 84 ~pi~lYn~P~~tg~~l~~~~l~~L~~~ 110 (198)
+||.|+-.-. -+.+.+.+..+.
T Consensus 83 VPVaLHlDHg-----~~~e~i~~ai~~ 104 (306)
T 3pm6_A 83 VPITLHLDHA-----QDPEIIKRAADL 104 (306)
T ss_dssp SCEEEEEEEE-----CCHHHHHHHHHT
T ss_pred CCEEEEcCCC-----CCHHHHHHHHHh
Confidence 9999987532 235666666554
No 433
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=76.73 E-value=2.5 Score=33.07 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CCeEEE
Q psy9711 6 KSTEEEKLKIISTLRQET---KKTIIA 29 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~~pvi~ 29 (198)
+|+.+|+.++++.+.+.+ ++|+|+
T Consensus 75 ~l~~~~~~~~a~~l~~l~~~~~~~liI 101 (243)
T 3o63_A 75 PLQARDELAACEILADAAHRYGALFAV 101 (243)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 478888888777777666 666655
No 434
>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}
Probab=76.71 E-value=28 Score=28.12 Aligned_cols=90 Identities=19% Similarity=0.183 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhc---CCeEEEe--C---------CCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCCHHHHHH
Q psy9711 12 KLKIISTLRQET---KKTIIAG--T---------YCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMTEDLIYE 73 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~g--v---------~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~~~~i~~ 73 (198)
..+-+..+++++ ++|+++= + ...+.+-...-++.+.++|+| -+=+-.| +
T Consensus 161 ~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~~y~-------------e 227 (307)
T 3fok_A 161 TLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLPVV-------------E 227 (307)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEEECC-------------T
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEeCCc-------------H
Confidence 333344444444 8998773 1 124567777788899999999 5555222 1
Q ss_pred HHHHHHccCCCCEEEEeCCCCccccc--CHHHHHHHHc---CCCEEEEeeC
Q psy9711 74 HFISVADNSPIPVIIYNNTFVTNIDI--SVDTLVKLAH---HENIRGVKDT 119 (198)
Q Consensus 74 y~~~i~~~~~~pi~lYn~P~~tg~~l--~~~~l~~L~~---~p~i~giK~s 119 (198)
-|++|.+++++|+++= .|-.. ..+++..+.+ +++..|+=..
T Consensus 228 ~f~~Vv~a~~vPVVia-----GG~k~~~~~e~L~~v~~A~~~aGa~Gv~vG 273 (307)
T 3fok_A 228 EMERVMESTTMPTLLL-----GGEGGNDPDATFASWEHALTLPGVRGLTVG 273 (307)
T ss_dssp THHHHGGGCSSCEEEE-----CCSCC--CHHHHHHHHHHTTSTTEEEEEEC
T ss_pred HHHHHHHhCCCCEEEe-----CCCCCCCHHHHHHHHHHHHHhCCCeEEeec
Confidence 2799999999999994 33333 3466666653 3789998776
No 435
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Probab=76.66 E-value=7 Score=30.64 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHH-hcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 34 ESTRATIDLTQKAA-KAGANAALILCPYYF-QKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 34 ~~~~~~i~~a~~a~-~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
...+++++..+++. +.|+.++.+.+.+.. .++ ++.+...|+. ++..++||+++-.
T Consensus 100 ~~~~~~~~el~~~~~~~g~~gi~~~~~~~~~~~~--~~~~~~~~~~-a~~~~lpv~iH~~ 156 (307)
T 2f6k_A 100 PYELDAVKTVQQALDQDGALGVTVPTNSRGLYFG--SPVLERVYQE-LDARQAIVALHPN 156 (307)
T ss_dssp TCHHHHHHHHHHHHHTSCCSEEEEESEETTEETT--CGGGHHHHHH-HHTTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHhccCCcEEEEeccCCCCCCC--cHhHHHHHHH-HHHcCCeEEECCC
Confidence 44577888887765 579999966554321 233 4555555555 4567999999865
No 436
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=76.63 E-value=8.7 Score=29.68 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Q psy9711 11 EKLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY 60 (198)
Q Consensus 11 Er~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~ 60 (198)
+-.+-++.+++++ .+|||.-++-.+.++....++.+.++|||.+=-..-+
T Consensus 99 ~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf 151 (226)
T 1vcv_A 99 EVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGF 151 (226)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSC
T ss_pred HHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3344444555554 3566777666666666666777777777766655433
No 437
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=76.59 E-value=4.3 Score=30.29 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred eEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC--CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHH
Q psy9711 26 TIIAGTYCESTRATIDLTQKAAKAGANAALILC--PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDT 103 (198)
Q Consensus 26 pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~--P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~ 103 (198)
.++.|++..+..+ ++.+.+.|+|.+++.+ |...++. ....-.++++.+.+.+++|++. ..|.+ ++.
T Consensus 108 ~~~~~v~~~t~~e----~~~~~~~g~d~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~pvia-----~GGI~--~~n 175 (215)
T 1xi3_A 108 NLIIGASVYSLEE----ALEAEKKGADYLGAGSVFPTKTKED-ARVIGLEGLRKIVESVKIPVVA-----IGGIN--KDN 175 (215)
T ss_dssp TSEEEEEESSHHH----HHHHHHHTCSEEEEECSSCC----C-CCCCHHHHHHHHHHHCSSCEEE-----ESSCC--TTT
T ss_pred CCEEEEecCCHHH----HHHHHhcCCCEEEEcCCccCCCCCC-CCCcCHHHHHHHHHhCCCCEEE-----ECCcC--HHH
Q ss_pred HHHHHcC-CCEEEE
Q psy9711 104 LVKLAHH-ENIRGV 116 (198)
Q Consensus 104 l~~L~~~-p~i~gi 116 (198)
+.++.+. +..+.+
T Consensus 176 v~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 176 AREVLKTGVDGIAV 189 (215)
T ss_dssp HHHHHTTTCSEEEE
T ss_pred HHHHHHcCCCEEEE
No 438
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=76.45 E-value=9.2 Score=28.81 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCEEEEcCCCCcCCCC--CHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHc
Q psy9711 42 LTQKAAKAGANAALILCPYYFQKKM--TEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAH 109 (198)
Q Consensus 42 ~a~~a~~~Gad~v~~~~P~y~~~~~--~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 109 (198)
.++.+.+.|+|.+++.+ .|...+. .+..-.++++.+.+..++|++. ..|. +++.+.++.+
T Consensus 122 ~~~~a~~~gaD~i~~~~-~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia-----~GGI--~~~nv~~~~~ 183 (221)
T 1yad_A 122 EAVQAEKEDADYVLFGH-VFETDCKKGLEGRGVSLLSDIKQRISIPVIA-----IGGM--TPDRLRDVKQ 183 (221)
T ss_dssp HHHHHHHTTCSEEEEEC-CC----------CHHHHHHHHHHHCCSCEEE-----ESSC--CGGGHHHHHH
T ss_pred HHHHHHhCCCCEEEECC-ccccCCCCCCCCCCHHHHHHHHHhCCCCEEE-----ECCC--CHHHHHHHHH
Confidence 34566677888777754 2221110 0011134555555555666654 2232 5556655554
No 439
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A
Probab=76.30 E-value=7 Score=33.30 Aligned_cols=167 Identities=17% Similarity=0.165 Sum_probs=94.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhc------CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHH
Q psy9711 3 NSFKSTEEEKLKIISTLRQET------KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFI 76 (198)
Q Consensus 3 E~~~Lt~~Er~~l~~~~~~~~------~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~ 76 (198)
....+..+||......+++.+ ++--.+.++ .+.++.+++++.++++|+.++|+- ++...++ -.+
T Consensus 205 ~qpf~p~~eR~~~v~eai~~a~~eTGe~k~~~~NiT-~~~~em~~Ra~~a~e~G~~~~mvd-~~~~G~~--------a~~ 274 (435)
T 1ykw_A 205 DVTWSSIEERAAHLGKARRKAEAETGEPKIYLANIT-DEVDSLMEKHDVAVRNGANALLIN-ALPVGLS--------AVR 274 (435)
T ss_dssp SBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECC-CCGGGHHHHHHHHHHHTCCEEEEE-HHHHCHH--------HHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCcceeecccC-CCHHHHHHHHHHHHHcCCCEEEEe-ccccChH--------HHH
Confidence 345667789987554444443 344466888 489999999999999999998885 3322221 123
Q ss_pred HHHccCCCCEEEEeCCC-----CcccccCHHHHHHHHc-----C---CCEEEEeeC-CHHHHH---HHHhh---cCCCCe
Q psy9711 77 SVADNSPIPVIIYNNTF-----VTNIDISVDTLVKLAH-----H---ENIRGVKDT-DNIKLA---NMANQ---TKDLNF 136 (198)
Q Consensus 77 ~i~~~~~~pi~lYn~P~-----~tg~~l~~~~l~~L~~-----~---p~i~giK~s-d~~~~~---~~~~~---~~~~~~ 136 (198)
.+++..++||..+-.-. .....++..++.+|.+ + +.++| |.. +..... +.++. ...+-+
T Consensus 275 ~l~~~~~l~lh~HrA~hg~~~r~~~~Gi~~~vl~Kl~RlaG~D~ih~gt~~G-Kleg~~~~~~~~~~~l~~~~~~~~~v~ 353 (435)
T 1ykw_A 275 MLSNYTQVPLIGHFPFIASFSRMEKYGIHSKVMTKLQRLAGLDAVIMPGFGD-RVMTPEEEVLENVIECTKPMGRIKPCL 353 (435)
T ss_dssp HHHHHCSSCEEEECTTTHHHHCSTTSEECHHHHHHHHHHHTCSEEEEECSST-TSSSCHHHHHHHHHHHHSCCTTCCCCE
T ss_pred HHHhcCCCeEEEccCcceeccCCCCCCcCHHHHHHHHHHcCCCeeecCCcCC-ccCCCHHHHHHHHHHHhhhhhcCCCCC
Confidence 33444788888774310 0112355666555542 1 45543 666 544333 33322 123568
Q ss_pred EEEecChh--hHHHHh-hcC-CCeEEecccccc---------hHHHHHHHHHHHcCC
Q psy9711 137 SVFAGSAG--YLLSGL-LVG-CAGGINALSAVL---------GGPICELYDLAKAGK 180 (198)
Q Consensus 137 ~v~~G~d~--~~~~~l-~~G-~~G~is~~~n~~---------P~~~~~l~~~~~~gd 180 (198)
.|.+|.-+ .+...+ ..| -|-++...+.++ ...+++-|+++.+|.
T Consensus 354 PV~SGGih~~~~p~l~~~~G~~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~g~ 410 (435)
T 1ykw_A 354 PVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAIEQGI 410 (435)
T ss_dssp EEEECSBCTTTHHHHHHHHCSSCSEECBSSSSSSCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCccccchhhHHHHHHHhCCCCeEEEeCCcccCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 88887543 232222 357 554443333332 146777788888875
No 440
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=76.14 E-value=32 Score=28.53 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=65.3
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCCH-----------------HHHHHHHHHHH--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMTE-----------------DLIYEHFISVA-- 79 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~~-----------------~~i~~y~~~i~-- 79 (198)
|.-||+| ++-.+.+.+++.|+..++++.. -.+++--||+||--|. ++=++..+.+.
T Consensus 68 rllvIaGPCSIed~e~aleyA~~Lk~~~~~~~d~l~iVmR~yfeKPRTs~GwKGli~dP~ld~Sf~g~~GL~i~r~ll~~ 147 (370)
T 1of8_A 68 RVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVN 147 (370)
T ss_dssp SEEEEEECSCCCCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSSSSCCCTTTCTTSSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccccCCccccccccCCCcCCCcCHHHHHHHHHHHHHH
Confidence 5668888 6777888999999888877655 4555566667763223 55667766665
Q ss_pred -ccCCCCEEEE--e---------------CCCCcccccCHHHHHHHH-cCCCEEEEeeC---CHHHHHH
Q psy9711 80 -DNSPIPVIIY--N---------------NTFVTNIDISVDTLVKLA-HHENIRGVKDT---DNIKLAN 126 (198)
Q Consensus 80 -~~~~~pi~lY--n---------------~P~~tg~~l~~~~l~~L~-~~p~i~giK~s---d~~~~~~ 126 (198)
..+++|+.-= + +|.++ ..-.++.+++ ....-||+|.. ++.....
T Consensus 148 v~e~GlPvaTEvld~~~~qyv~Dllsw~aIGARt---~esq~hre~Asgl~~PVg~Kngt~g~i~~~~~ 213 (370)
T 1of8_A 148 LTNIGLPIGSEMLDTISPQYLADLVSFGAIGART---TESQLHRELASGLSFPVGFKNGTDGTLNVAVD 213 (370)
T ss_dssp HHTTTCCEEEECCSSSTHHHHGGGCSEEEECTTT---TTCHHHHHHHHTCSSCEEEECCTTSCSHHHHH
T ss_pred HHHcCCceEEeecCcccHHHHHHHHhhccccCcc---cccHHHHHHHhcCCCeEEEcCCCCCCHHHHHH
Confidence 5789999631 1 12221 1124566777 68999999999 4554433
No 441
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=76.11 E-value=8.4 Score=29.98 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 42 LTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 42 ~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.++.+.+.|+|++++.-- ...+.+.+.+..+.|-+ +++|++++
T Consensus 28 ~l~~~~~~GtDaI~vGgs----~gvt~~~~~~~v~~ik~-~~~Piil~ 70 (235)
T 3w01_A 28 DLDAICMSQTDAIMIGGT----DDVTEDNVIHLMSKIRR-YPLPLVLE 70 (235)
T ss_dssp HHHHHHTSSCSEEEECCS----SCCCHHHHHHHHHHHTT-SCSCEEEE
T ss_pred HHHHHHHcCCCEEEECCc----CCcCHHHHHHHHHHhcC-cCCCEEEe
Confidence 334467899999999862 21359999999999988 89999875
No 442
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=76.03 E-value=12 Score=28.74 Aligned_cols=137 Identities=15% Similarity=0.067 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCC
Q psy9711 14 KIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~ 93 (198)
++++.+.+.++.|+.++.-.++.+ +..+.+.++|||++.+..=.. + .+...+..+.+- ..++-+.+-=+|.
T Consensus 52 ~~v~~lr~~~~~~~~vhlmv~dp~---~~i~~~~~aGadgv~vh~e~~--~---~~~~~~~~~~i~-~~g~~~gv~~~p~ 122 (230)
T 1tqj_A 52 LIVDAIRPLTKKTLDVHLMIVEPE---KYVEDFAKAGADIISVHVEHN--A---SPHLHRTLCQIR-ELGKKAGAVLNPS 122 (230)
T ss_dssp HHHHHHGGGCCSEEEEEEESSSGG---GTHHHHHHHTCSEEEEECSTT--T---CTTHHHHHHHHH-HTTCEEEEEECTT
T ss_pred HHHHHHHhhcCCcEEEEEEccCHH---HHHHHHHHcCCCEEEECcccc--c---chhHHHHHHHHH-HcCCcEEEEEeCC
Confidence 566666555466777665444543 356778889999998863200 1 123445555553 3454444433554
Q ss_pred CcccccCHHHHHHHHc----------CCCEEEEeeC--CHHHHHHHHhhc--C--CCCeEEEecCh-hhHHHHhhcCCCe
Q psy9711 94 VTNIDISVDTLVKLAH----------HENIRGVKDT--DNIKLANMANQT--K--DLNFSVFAGSA-GYLLSGLLVGCAG 156 (198)
Q Consensus 94 ~tg~~l~~~~l~~L~~----------~p~i~giK~s--d~~~~~~~~~~~--~--~~~~~v~~G~d-~~~~~~l~~G~~G 156 (198)
.. .+.+..+.+ +|..-|-|.. ...+++++.+.. . +..+.+-.|-. +........|++|
T Consensus 123 t~-----~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~ 197 (230)
T 1tqj_A 123 TP-----LDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANA 197 (230)
T ss_dssp CC-----GGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCE
T ss_pred Cc-----HHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCE
Confidence 21 223333332 2333343332 345555544211 1 23444455543 3455667789999
Q ss_pred EEeccccc
Q psy9711 157 GINALSAV 164 (198)
Q Consensus 157 ~is~~~n~ 164 (198)
++.|.+-+
T Consensus 198 vvvGSai~ 205 (230)
T 1tqj_A 198 IVAGSAVF 205 (230)
T ss_dssp EEESHHHH
T ss_pred EEECHHHH
Confidence 99997633
No 443
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=75.97 E-value=10 Score=33.28 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC----CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCCCE
Q psy9711 38 ATIDLTQKAAKAGANAALILCPY----YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENI 113 (198)
Q Consensus 38 ~~i~~a~~a~~~Gad~v~~~~P~----y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p~i 113 (198)
++++.++.++++|++.+++..-. +..+ + .+.+++|.+++++||+. +|---+++.+.++.+.-++
T Consensus 453 ~~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~---d---~~li~~l~~~~~iPVIa------sGGi~s~~d~~~~~~~~G~ 520 (555)
T 1jvn_A 453 GVWELTRACEALGAGEILLNCIDKDGSNSGY---D---LELIEHVKDAVKIPVIA------SSGAGVPEHFEEAFLKTRA 520 (555)
T ss_dssp EHHHHHHHHHHTTCCEEEECCGGGTTTCSCC---C---HHHHHHHHHHCSSCEEE------CSCCCSHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCCC---C---HHHHHHHHHhCCccEEE------ECCCCCHHHHHHHHHhcCC
Confidence 47899999999999999875422 1222 2 45678888889999876 4656689999998863355
Q ss_pred EEEeeC
Q psy9711 114 RGVKDT 119 (198)
Q Consensus 114 ~giK~s 119 (198)
.|+=-.
T Consensus 521 ~gvivg 526 (555)
T 1jvn_A 521 DACLGA 526 (555)
T ss_dssp SEEEES
T ss_pred hHHHHH
Confidence 555443
No 444
>2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens}
Probab=75.85 E-value=8.3 Score=30.85 Aligned_cols=66 Identities=3% Similarity=0.018 Sum_probs=42.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHH-hcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAA-KAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~-~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
|..-++++--...+++++..+++. +.|+.|+-+.+- +.....+++.+...|+.+. ..++||+++-.
T Consensus 110 r~~~~~~l~~~~~~~a~~el~~~~~~~g~~Gv~l~~~-~~~~~l~d~~~~~~~~~~~-e~~lpv~iH~~ 176 (336)
T 2wm1_A 110 RFVGLGTLPMQAPELAVKEMERCVKELGFPGVQIGTH-VNEWDLNAQELFPVYAAAE-RLKCSLFVHPW 176 (336)
T ss_dssp TEEEEECCCTTSHHHHHHHHHHHHHTSCCSEEEEESE-ETTEETTCGGGHHHHHHHH-HHTCEEEEECC
T ss_pred ceeEEEeCCCcCHHHHHHHHHHHHHccCCeEEEECCc-CCCCCCCCccHHHHHHHHH-HcCCEEEECCC
Confidence 343344555445567788777776 679999977543 2221112566677776665 46999999865
No 445
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=75.85 E-value=6.6 Score=31.86 Aligned_cols=64 Identities=9% Similarity=0.041 Sum_probs=41.9
Q ss_pred HHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHcc
Q psy9711 14 KIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADN 81 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~ 81 (198)
+.+..+.+.+ ++|||+.=|=.+..++.+.. .+|||+|++..|+.+.....++++.++++.+.+.
T Consensus 245 ~~l~~v~~~~~~ipvia~GGI~~~~d~~kal----~~GAd~V~igr~~l~~~~~G~~gv~~~~~~l~~e 309 (332)
T 1vcf_A 245 RAILEVREVLPHLPLVASGGVYTGTDGAKAL----ALGADLLAVARPLLRPALEGAERVAAWIGDYLEE 309 (332)
T ss_dssp HHHHHHHHHCSSSCEEEESSCCSHHHHHHHH----HHTCSEEEECGGGHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEECCCCCHHHHHHHH----HhCCChHhhhHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4456666677 89998754444566665544 3599999999998753311377777777666543
No 446
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=75.57 E-value=27 Score=27.62 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=46.9
Q ss_pred HHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 13 LKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 13 ~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.++++-+.+++ +..+++.....+.+...+..+...+.++|++++.++. .+ + .. .+.+ ...++|+++.
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~---~~--~-~~---~~~l-~~~~iPvV~i 153 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLE---HS--E-AA---RAML-DAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSC---CC--H-HH---HHHH-HHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCC---CC--H-HH---HHHH-HhCCCCEEEE
Confidence 44555555555 7777777777778888888888889999999998643 22 3 22 2333 3568999998
Q ss_pred e
Q psy9711 90 N 90 (198)
Q Consensus 90 n 90 (198)
+
T Consensus 154 ~ 154 (344)
T 3kjx_A 154 M 154 (344)
T ss_dssp E
T ss_pred e
Confidence 4
No 447
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=75.55 E-value=15 Score=29.37 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcC----------------CCCcCCCCCHHHHH
Q psy9711 11 EKLKIISTLRQET--KKTIIAGTYCESTRATIDLTQKAAKAGANAALILC----------------PYYFQKKMTEDLIY 72 (198)
Q Consensus 11 Er~~l~~~~~~~~--~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~----------------P~y~~~~~~~~~i~ 72 (198)
.|.++++...+.. +.|||.+..+... -|+.+++.|+|-+++.. || ... .+-+.
T Consensus 12 ~r~~il~~l~~~i~~~~~iig~gaGtGl-----sAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpy--gna--N~iv~ 82 (286)
T 2p10_A 12 TRSELVDRFQKKIRAGEPIIGGGAGTGL-----SAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAY--GNA--NQIVV 82 (286)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEESSHH-----HHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTE--EEH--HHHHH
T ss_pred CHHHHHHHHHHHHhcCCceEEEecccch-----hhHHHHhCCCCEEEEeccchhhhcCccchhhhccc--cCH--HHHHH
Confidence 4666777777666 7777653333232 36778889999999864 22 222 78888
Q ss_pred HHHHHHHccC-CCCEEEEeCCCCcccccCHHHHHHHH
Q psy9711 73 EHFISVADNS-PIPVIIYNNTFVTNIDISVDTLVKLA 108 (198)
Q Consensus 73 ~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~ 108 (198)
++-++|.-.+ ++||+-.=.+.-.+..+ ...+.+|.
T Consensus 83 e~~~evlp~v~~iPV~Agv~~~DP~~~~-g~~Le~lk 118 (286)
T 2p10_A 83 DMAREVLPVVRHTPVLAGVNGTDPFMVM-STFLRELK 118 (286)
T ss_dssp HHHHHHGGGCSSSCEEEEECTTCTTCCH-HHHHHHHH
T ss_pred HHHHhhhccCCCCCEEEEECCcCCCcCH-HHHHHHHH
Confidence 9999999888 79999985544333332 23334444
No 448
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=75.43 E-value=28 Score=27.48 Aligned_cols=190 Identities=12% Similarity=0.060 Sum_probs=106.9
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCeEEEeCC---CC------cHHHH------------------HHHHHHHHhcCCCEE
Q psy9711 2 SNSFKSTEEEKLKIISTLRQETKKTIIAGTY---CE------STRAT------------------IDLTQKAAKAGANAA 54 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~~~~~~~~~pvi~gv~---~~------~~~~~------------------i~~a~~a~~~Gad~v 54 (198)
++...+|.+++.++++...+. ++|+|-..+ .. +..+. .+.++.+.++|++.+
T Consensus 18 ~~~~~~~~e~k~~i~~~L~~~-Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~n~~~i~~a~~~G~~~V 96 (295)
T 1ydn_A 18 NEKRFVPTADKIALINRLSDC-GYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVPNMKGYEAAAAAHADEI 96 (295)
T ss_dssp TSSSCCCHHHHHHHHHHHTTT-TCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECSSHHHHHHHHHTTCSEE
T ss_pred CCCCCcCHHHHHHHHHHHHHc-CcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHCCCCEE
Confidence 456678888888888888654 666544322 11 12222 334577888999999
Q ss_pred EEcCCCC---c--CCCCCHHHHHHHHHHHHcc---CCCCEEEE-----eCCCCcccccCHHHHHHHHc----C-CCEEEE
Q psy9711 55 LILCPYY---F--QKKMTEDLIYEHFISVADN---SPIPVIIY-----NNTFVTNIDISVDTLVKLAH----H-ENIRGV 116 (198)
Q Consensus 55 ~~~~P~y---~--~~~~~~~~i~~y~~~i~~~---~~~pi~lY-----n~P~~tg~~l~~~~l~~L~~----~-p~i~gi 116 (198)
++..+.. . +...+.++.++-.+++.+. .++++-.| ..|. +...+++.+.++++ . ...+.+
T Consensus 97 ~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~--~~~~~~~~~~~~~~~~~~~G~d~i~l 174 (295)
T 1ydn_A 97 AVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPY--DGPVTPQAVASVTEQLFSLGCHEVSL 174 (295)
T ss_dssp EEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETT--TEECCHHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCc--CCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 8875442 0 0112477788777776654 36777533 2232 23456776666653 3 578999
Q ss_pred eeC----CHHHHHHHHh---hcCC-CCeEEEecCh------hhHHHHhhcCCC---eEEec----------ccccchHHH
Q psy9711 117 KDT----DNIKLANMAN---QTKD-LNFSVFAGSA------GYLLSGLLVGCA---GGINA----------LSAVLGGPI 169 (198)
Q Consensus 117 K~s----d~~~~~~~~~---~~~~-~~~~v~~G~d------~~~~~~l~~G~~---G~is~----------~~n~~P~~~ 169 (198)
+|+ .+..+.++++ +..+ -.+.+ -+.+ .....++..|++ +.+.| .+|..-+.+
T Consensus 175 ~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~-H~Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~l 253 (295)
T 1ydn_A 175 GDTIGRGTPDTVAAMLDAVLAIAPAHSLAG-HYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAV 253 (295)
T ss_dssp EETTSCCCHHHHHHHHHHHHTTSCGGGEEE-EEBCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHHHhCCCCeEEE-EECCCcchHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHHH
Confidence 998 5655555442 2232 23543 3322 134566778864 33322 467766776
Q ss_pred HHHHHHHH--cC-CHHHHHHHHHHhhchh
Q psy9711 170 CELYDLAK--AG-KWEEAMKLQHRLVKPD 195 (198)
Q Consensus 170 ~~l~~~~~--~g-d~~~A~~l~~~~~~l~ 195 (198)
+...+... .| |.++-.++-+.+.+++
T Consensus 254 v~~l~~~g~~~~id~~~l~~~~~~~~~~~ 282 (295)
T 1ydn_A 254 VEMLHEMGFETGLDLDRLRSAGLFTQALR 282 (295)
T ss_dssp HHHHHHTTCBCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHHH
Confidence 66655331 12 5666666655554443
No 449
>3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus}
Probab=75.34 E-value=9 Score=31.46 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=42.0
Q ss_pred EeCCCCcHHHHHHHHHHH-HhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 29 AGTYCESTRATIDLTQKA-AKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 29 ~gv~~~~~~~~i~~a~~a-~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+.+.-...+++++.++++ .+.|+.++.+.++.-... .+++.+...|+.+.+ .++||+++-.
T Consensus 133 a~v~~~~~~~a~~El~r~~~~~G~~Gv~l~~~~~~~~-~~d~~~~p~~~~~~e-~g~pV~iH~g 194 (357)
T 3nur_A 133 ATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGF-LDQDKYDIIFKTAEN-LDVPIYLHPA 194 (357)
T ss_dssp BCCCTTSHHHHHHHHHHHHHTTCCCCEEEESCBTTBC-TTSGGGHHHHHHHHH-HTCCEEEECC
T ss_pred EeCCCCCHHHHHHHHHHHHhhcCceEEEeCCCCCCCC-CCCccHHHHHHHHHh-cCCeEEEecC
Confidence 333333457788888886 579999999986432111 236778888887764 5999999864
No 450
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=75.17 E-value=11 Score=30.45 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcC----CCCcCCCCCHHHHHHHH---HHHHccCCCCEEEE
Q psy9711 36 TRATIDLTQKAAKAGANAALILC----PYYFQKKMTEDLIYEHF---ISVADNSPIPVIIY 89 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~----P~y~~~~~~~~~i~~y~---~~i~~~~~~pi~lY 89 (198)
.++++++++...+.|||-+=+.. |....-+ .++++.+.. +.|.+.+++||.+-
T Consensus 62 ~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~-~~eE~~RvvpvI~~l~~~~~vpiSID 121 (297)
T 1tx2_A 62 VDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVS-VEEEIKRVVPMIQAVSKEVKLPISID 121 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC----CCCCC-HHHHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCC-HHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 58899999999999999999984 4333222 266666555 77777778998764
No 451
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=75.14 E-value=18 Score=28.71 Aligned_cols=72 Identities=4% Similarity=-0.024 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHH-HHHHHHHhcCCCEEEEcCCCCc-CCCCCHHHHHHHHHHHHc
Q psy9711 5 FKSTEEEKLKIISTLRQETKKTIIAGTYCESTRATI-DLTQKAAKAGANAALILCPYYF-QKKMTEDLIYEHFISVAD 80 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i-~~a~~a~~~Gad~v~~~~P~y~-~~~~~~~~i~~y~~~i~~ 80 (198)
+.+++++|.++++.+++. +.+=++=+--...++.+ ++.+.|.+.|..- +++.-.|. .|+ .+++.+.|+...+
T Consensus 114 ~~~~~~~~~~ll~~~l~~-g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kv-I~S~Hdf~~tP~--~~el~~~~~~~~~ 187 (276)
T 3o1n_A 114 QALTTGQYIDLNRAAVDS-GLVDMIDLELFTGDDEVKATVGYAHQHNVAV-IMSNHDFHKTPA--AEEIVQRLRKMQE 187 (276)
T ss_dssp BCCCHHHHHHHHHHHHHH-TCCSEEEEEGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCC--HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhc-CCCCEEEEECcCCHHHHHHHHHHHHhCCCEE-EEEeecCCCCcC--HHHHHHHHHHHHH
Confidence 358899999999998876 21212222111223333 3334455556543 33322232 344 7788888877754
No 452
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=75.02 E-value=8 Score=30.95 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeCCCC----cHHHHHHHHHHHHh
Q psy9711 6 KSTEEEKLKIISTLRQET-KKTIIAGTYCE----STRATIDLTQKAAK 48 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~----~~~~~i~~a~~a~~ 48 (198)
++..+.-+++++..++.. ..-++.|..+. +.+|-.+.++.+.+
T Consensus 24 ~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~ 71 (297)
T 3flu_A 24 SIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVK 71 (297)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHH
Confidence 445555555555555543 33334444333 23444444444443
No 453
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=74.97 E-value=9.1 Score=30.76 Aligned_cols=54 Identities=11% Similarity=0.042 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII 88 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l 88 (198)
+.+...+++++..+.|+|++++..-.-..+++|.+|-.+..+.+.+.+ ++||+.
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 90 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIA 90 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 344445555555555555555543332222233555555555555443 255543
No 454
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=74.86 E-value=8.4 Score=31.82 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC---CcC-CCC-----CHHHHHHH
Q psy9711 5 FKSTEEEKLKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPY---YFQ-KKM-----TEDLIYEH 74 (198)
Q Consensus 5 ~~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~---y~~-~~~-----~~~~i~~y 74 (198)
+-.|.++-+++++.+.+.. .+|- +...+++.+....+.|++.+...++-..|. |.. ... ....+..+
T Consensus 2 p~~~~~~~~~ll~~A~~~~yAV~A---fNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~ 78 (349)
T 3elf_A 2 PIATPEVYAEMLGQAKQNSYAFPA---INCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEF 78 (349)
T ss_dssp CBCCHHHHHHHHHHHHHTTCCEEE---EECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHcCceEEE---EeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHH
Confidence 4578889999999998875 5554 344467777777888899998888877764 211 100 02456778
Q ss_pred HHHHHccCCCCEEEEeCCC
Q psy9711 75 FISVADNSPIPVIIYNNTF 93 (198)
Q Consensus 75 ~~~i~~~~~~pi~lYn~P~ 93 (198)
.+.+++..++||.|+-.-.
T Consensus 79 v~~~A~~~~VPVaLHlDHg 97 (349)
T 3elf_A 79 THVIAAKYPVNVALHTDHC 97 (349)
T ss_dssp HHHHHTTSSSCEEEEECCC
T ss_pred HHHHHHHCCCCEEEECCCC
Confidence 8999999999999997643
No 455
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=74.79 E-value=11 Score=29.19 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCc----CCCCCH---HHHHHHHHHHHc---cCCCCEEEEeCCCCccc-ccCHHHHH
Q psy9711 37 RATIDLTQKAAKAGANAALILCPYYF----QKKMTE---DLIYEHFISVAD---NSPIPVIIYNNTFVTNI-DISVDTLV 105 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~P~y~----~~~~~~---~~i~~y~~~i~~---~~~~pi~lYn~P~~tg~-~l~~~~l~ 105 (198)
+...+.++.|+++|+..+.+.+.+.. .|+ ++ +.+.+.++.+++ ..++.+.+.|.+...+. .-+++.+.
T Consensus 104 ~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~ 182 (287)
T 3kws_A 104 DTMKEIIAAAGELGSTGVIIVPAFNGQVPALPH-TMETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRKECFYLRQVADAA 182 (287)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCS-SHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTTCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccCcccCCHHHHH
Confidence 34456778889999999888654321 112 12 334555555554 45899999987532222 23677777
Q ss_pred HHHc---CCCEEEEeeC
Q psy9711 106 KLAH---HENIRGVKDT 119 (198)
Q Consensus 106 ~L~~---~p~i~giK~s 119 (198)
+|.+ .||+--.=|.
T Consensus 183 ~ll~~v~~~~vg~~~D~ 199 (287)
T 3kws_A 183 SLCRDINNPGVRCMGDF 199 (287)
T ss_dssp HHHHHHCCTTEEEEEEH
T ss_pred HHHHHcCCCCeeEEeeh
Confidence 7773 4786555554
No 456
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Probab=74.71 E-value=14 Score=30.28 Aligned_cols=98 Identities=7% Similarity=0.018 Sum_probs=63.0
Q ss_pred HHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+.++.+.++. ++++.+=+ ++-+.++ +++++..++.|++.+ --|. .+. + .+.++.|.+++++||+.=..
T Consensus 178 ~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~ipIa~dE~ 247 (375)
T 1r0m_A 178 QPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDLTYI--EQPL--AWD--D---LVDHAELARRIRTPLCLDES 247 (375)
T ss_dssp HHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCCSCE--ECCS--CTT--C---SHHHHHHHHHCSSCEEESTT
T ss_pred HHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCCcEE--ECCC--Ccc--c---HHHHHHHHHhCCCCEEecCc
Confidence 4456665555 67777654 3346677 888888888776644 3443 111 1 34567788888899887332
Q ss_pred CCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 92 TFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 248 ------~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 282 (375)
T 1r0m_A 248 ------VASASDARKALALGAGGVINLKVARVGGHAESRRV 282 (375)
T ss_dssp ------CCSHHHHHHHHHHTSCSEEEECTTTTTSHHHHHHH
T ss_pred ------cCCHHHHHHHHHhCCCCEEEECcchhcCHHHHHHH
Confidence 346788888873 4689999988 45444443
No 457
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=74.70 E-value=22 Score=27.89 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCC--CCHHHH-HHHHHHHHccCCCCEEEEeCC
Q psy9711 40 IDLTQKAAKAGANAALILCPYYFQKK--MTEDLI-YEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 40 i~~a~~a~~~Gad~v~~~~P~y~~~~--~~~~~i-~~y~~~i~~~~~~pi~lYn~P 92 (198)
-+.++.|.+.|||.++.--|+++++. .+.++. .+-.+.+. +-++.++-+|.|
T Consensus 49 ~~vi~eAi~~gadlIitHHP~~f~~~~~~~~~~~~~~~i~~li-~~~I~lya~Ht~ 103 (267)
T 2fyw_A 49 EETVAEAIEKGVDLIIVKHAPIFRPIKDLLASRPQNQIYIDLI-KHDIAVYVSHTN 103 (267)
T ss_dssp HHHHHHHHHTTCSEEEESSCSCCSCCCCCCTTSHHHHHHHHHH-HTTCEEEECSHH
T ss_pred HHHHHHHHHCCCCEEEECCccccCCccccccCchHHHHHHHHH-HCCCeEEEeecc
Confidence 44456777899999999999988653 112222 22233333 347888888764
No 458
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A
Probab=74.65 E-value=16 Score=27.87 Aligned_cols=69 Identities=10% Similarity=0.065 Sum_probs=47.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHH
Q psy9711 27 IIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVD 102 (198)
Q Consensus 27 vi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~ 102 (198)
|.+-+...+.++.++.++. .|+|.+=+---++..++ .+.+.+..+.+-+. ++|+++-.-+...|-. +.+
T Consensus 3 icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~l~~~~--~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~-~~~ 71 (219)
T 2egz_A 3 IAVPLDDTNFSENLKKAKE---KGADIVELRVDQFSDTS--LNYVKEKLEEVHSQ-GLKTILTIRSPEEGGR-EVK 71 (219)
T ss_dssp EEEEECSTTHHHHHHHHHH---HTCSEEEEEGGGCSCCC--HHHHHHHHHHHHHT-TCEEEEECCCGGGTCC-CCT
T ss_pred EEEEeCCCCHHHHHHHHHH---cCCCEEEEEeccccccC--HHHHHHHHHHHHhc-CCcEEEEEeehhccCC-CHH
Confidence 4556667788888777665 49999999888776665 66566666666554 7999887766555443 444
No 459
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=74.63 E-value=7.5 Score=31.56 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEcC----CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 37 RATIDLTQKAAKAGANAALILC----PYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 37 ~~~i~~a~~a~~~Gad~v~~~~----P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+.++++++...+.|||.+-+-. |-...-+ .++..+..+.|.+.+++||.|++.
T Consensus 74 ~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs--~eee~~vV~~v~~~~~vplsI~DT 130 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRS--GAELAEVCKAVADAIDVPLMIIGC 130 (310)
T ss_dssp TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCC--HHHHHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCC--HHHHHHHHHHHHHhCCceEEEECC
Confidence 3678888899999999999886 4433333 888888999999999999999664
No 460
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=74.62 E-value=14 Score=29.64 Aligned_cols=101 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred cCCCCHHHHHHHHHHHHHhc---CCeEEEeCCCC------------cHHHHHHHHHHHHhcCCCEEEEc---CCCCcCCC
Q psy9711 4 SFKSTEEEKLKIISTLRQET---KKTIIAGTYCE------------STRATIDLTQKAAKAGANAALIL---CPYYFQKK 65 (198)
Q Consensus 4 ~~~Lt~~Er~~l~~~~~~~~---~~pvi~gv~~~------------~~~~~i~~a~~a~~~Gad~v~~~---~P~y~~~~ 65 (198)
+..++.+|-.++.+.+++.+ ++.|=+=+|.. ...+--+-.+++++.|+|.+-+. .--.++..
T Consensus 111 gS~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~ 190 (288)
T 3q94_A 111 ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGE 190 (288)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCC
Q ss_pred CCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC
Q psy9711 66 MTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE 111 (198)
Q Consensus 66 ~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p 111 (198)
+.==++-.++|.+.+++|+++ ..|..++.+.+++..+..
T Consensus 191 --p~Ld~~~L~~I~~~v~vpLVl-----HGgSG~~~e~i~~ai~~G 229 (288)
T 3q94_A 191 --PNLGFAEMEQVRDFTGVPLVL-----HGGTGIPTADIEKAISLG 229 (288)
T ss_dssp --CCCCHHHHHHHHHHHCSCEEE-----CCCTTCCHHHHHHHHHTT
T ss_pred --CccCHHHHHHHHHhcCCCEEE-----eCCCCCCHHHHHHHHHcC
No 461
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=74.62 E-value=26 Score=26.74 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=79.8
Q ss_pred HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
.+.++...+.. ++-+-+|+ .-+ -+.++.|.++|||++.+ |. . +.++.+.-+ ..+.|+++
T Consensus 56 ~~~i~~l~~~~~~l~vgaGt--vl~---~d~~~~A~~aGAd~v~~--p~----~--d~~v~~~ar----~~g~~~i~--- 115 (224)
T 1vhc_A 56 ADAIRLLRANRPDFLIAAGT--VLT---AEQVVLAKSSGADFVVT--PG----L--NPKIVKLCQ----DLNFPITP--- 115 (224)
T ss_dssp HHHHHHHHHHCTTCEEEEES--CCS---HHHHHHHHHHTCSEEEC--SS----C--CHHHHHHHH----HTTCCEEC---
T ss_pred HHHHHHHHHhCcCcEEeeCc--Eee---HHHHHHHHHCCCCEEEE--CC----C--CHHHHHHHH----HhCCCEEe---
Confidence 44555555554 44444444 222 27778888999999942 32 2 455555333 35677765
Q ss_pred CCCcccccCHHHHHHHHcC-CCEEEEeeC-C----HHHHHHHHhhcCCCCeEE--EecCh-hhHHHHhhc-CCCeEEecc
Q psy9711 92 TFVTNIDISVDTLVKLAHH-ENIRGVKDT-D----NIKLANMANQTKDLNFSV--FAGSA-GYLLSGLLV-GCAGGINAL 161 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~~-p~i~giK~s-d----~~~~~~~~~~~~~~~~~v--~~G~d-~~~~~~l~~-G~~G~is~~ 161 (198)
| ..+++.+.+..+. ...+++ .. . +..+.++. ... +++.+ ..|-+ +.+...+.. |++|+. .
T Consensus 116 ----G-v~t~~e~~~A~~~Gad~vk~-Fpa~~~gG~~~lk~l~-~~~-~~ipvvaiGGI~~~N~~~~l~agga~~v~--g 185 (224)
T 1vhc_A 116 ----G-VNNPMAIEIALEMGISAVKF-FPAEASGGVKMIKALL-GPY-AQLQIMPTGGIGLHNIRDYLAIPNIVACG--G 185 (224)
T ss_dssp ----E-ECSHHHHHHHHHTTCCEEEE-TTTTTTTHHHHHHHHH-TTT-TTCEEEEBSSCCTTTHHHHHTSTTBCCEE--E
T ss_pred ----c-cCCHHHHHHHHHCCCCEEEE-eeCccccCHHHHHHHH-hhC-CCCeEEEECCcCHHHHHHHHhcCCCEEEE--E
Confidence 3 2356555554443 466666 43 2 34444443 323 34444 44554 456777888 666555 4
Q ss_pred cccchHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q psy9711 162 SAVLGGPICELYDLAKAGKWEEAMKLQHRLVK 193 (198)
Q Consensus 162 ~n~~P~~~~~l~~~~~~gd~~~A~~l~~~~~~ 193 (198)
+.+++... ..+|||++..+.-+.+..
T Consensus 186 S~i~~~~~------i~~~~~~~i~~~a~~~~~ 211 (224)
T 1vhc_A 186 SWFVEKKL------IQSNNWDEIGRLVREVID 211 (224)
T ss_dssp CGGGCHHH------HHTTCHHHHHHHHHHHHH
T ss_pred chhcCcch------hccCCHHHHHHHHHHHHH
Confidence 55665432 256888877666555443
No 462
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=74.58 E-value=29 Score=27.21 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=41.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
+..+++.....+.....+..+...+.++|++++.++. .+.+...++.+. ..++|+++++.+
T Consensus 36 g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~-------~~~~~~~~~~~~-~~~iPvV~~~~~ 96 (325)
T 2x7x_A 36 GVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANE-------AAPMTPIVEEAY-QKGIPVILVDRK 96 (325)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSS-------HHHHHHHHHHHH-HTTCCEEEESSC
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------HHHHHHHHHHHH-HCCCeEEEeCCC
Confidence 4566665555667777788888888899999987542 333334444443 468999999864
No 463
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=74.56 E-value=3 Score=31.52 Aligned_cols=42 Identities=2% Similarity=0.035 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 6 KSTEEEKLKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
.++.++..++++.+.+..++++++. +..+.|.+.|+|++.+.
T Consensus 36 ~~~~~~~~~~i~~l~~~~~~~livn----------d~~~~A~~~gadgvhl~ 77 (210)
T 3ceu_A 36 ETPAMYSERLLTLIPEKYHRRIVTH----------EHFYLKEEFNLMGIHLN 77 (210)
T ss_dssp SCCHHHHHHHHHHSCGGGGGGEEES----------SCTTHHHHTTCSEEECC
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEe----------CCHHHHHHcCCCEEEEC
Confidence 3667777776655433327777763 12256667888888764
No 464
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=74.45 E-value=34 Score=27.99 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=14.8
Q ss_pred HHHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHH
Q psy9711 13 LKIISTLRQET-KKTIIAGT-YCESTRATIDLTQKA 46 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a 46 (198)
.+.++.+++.. +.++++=+ ++-+.+++++.++..
T Consensus 175 ~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L 210 (365)
T 3ik4_A 175 LARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAAC 210 (365)
T ss_dssp HHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33444444444 44444432 233445555555554
No 465
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=74.31 E-value=13 Score=32.24 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=27.2
Q ss_pred HHHHHHHHHhc-CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE
Q psy9711 13 LKIISTLRQET-KKTIIAGTYCESTRATIDLTQKAAKAGANAALI 56 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~ 56 (198)
.++++.+.+.. ++||++|-.. +.+.++.+.++|+|++.+
T Consensus 285 ~~~i~~i~~~~~~~~vi~g~v~-----t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 285 IDKVKEVRAKYPSLNIIAGNVA-----TAEATKALIEAGANVVKV 324 (511)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEC-----SHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHhCCCceEEeeeec-----cHHHHHHHHHhCCCEEEE
Confidence 34666666655 6888875322 345578888999999997
No 466
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=74.28 E-value=4.8 Score=33.48 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 12 KLKIISTLRQETKKTIIAG-TYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 12 r~~l~~~~~~~~~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
..+.++.+++..++||++- +|..-+ .+.++.+.++|+|++.+..-
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s---~~~A~~l~~aGad~I~V~g~ 220 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGIS---METAKLLYSYGIKNFDTSGQ 220 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCC---HHHHHHHHHTTCCEEECCCB
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCC---HHHHHHHHhCCCCEEEEeCC
Confidence 4567777776669999983 543322 45688899999999998754
No 467
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=74.25 E-value=10 Score=32.05 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=64.6
Q ss_pred CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEc------------C---CCCcCCCCCH--HHHHH------------
Q psy9711 24 KKTIIAGT-YCESTRATIDLTQKAAKAGANAALIL------------C---PYYFQKKMTE--DLIYE------------ 73 (198)
Q Consensus 24 ~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~------------~---P~y~~~~~~~--~~i~~------------ 73 (198)
++-++.|+ |+..+...++..+...++|+..+-+. . |.+...+ + .++++
T Consensus 151 kia~llgiEg~~~i~~dl~~L~~~y~lGvR~~tLthn~~N~~adg~~~~~~~~~~GLT--~~G~~vV~eMnrlGmivDlS 228 (417)
T 2rag_A 151 KKFAFVSMENSWPVGEDLSLVETFYKEGLRMAGPVHFRNNQLADSSTDPKGKIWNGYS--PLGLRWLAEANRLGIVIDVS 228 (417)
T ss_dssp CEEEEEEEECCGGGTTCTHHHHHHHHTTEEEEESCCSSCCSSBCBSSCTTCCSSSSBC--HHHHHHHHHHHHHTCEEBCT
T ss_pred CEEEEEEeechhhhcCCHHHHHHHHHcCCeEEEccccCCCccccccCCCCCCCCCCCC--HhHHHHHHHHHHcCCEEECC
Confidence 56678887 66677778899999999998877765 1 2222332 3 33333
Q ss_pred -----HHHHHHccCCCCEEEEeCCCC----cccccCHHHHHHHHcCCCEEEEe
Q psy9711 74 -----HFISVADNSPIPVIIYNNTFV----TNIDISVDTLVKLAHHENIRGVK 117 (198)
Q Consensus 74 -----y~~~i~~~~~~pi~lYn~P~~----tg~~l~~~~l~~L~~~p~i~giK 117 (198)
-|.++.+.+..||+.-|.-.+ ...+++.+.++.|++...|+|+=
T Consensus 229 H~s~~t~~dvl~~s~~PvIaSHSnaral~~hpRNl~De~l~~la~~GGvigv~ 281 (417)
T 2rag_A 229 HASDDVVDQSVALSKAPIIASHSGPKAVYDHPRNLDDARLKKIADAGGAICIN 281 (417)
T ss_dssp TBCHHHHHHHHHHCSSCCEEEEEEETTTSCCTTEECHHHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHHhcCCCeEEecCchHhhCCCCCCCCHHHHHHHHHcCCEEEEE
Confidence 346667788899987654211 23489999999999999999983
No 468
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=74.17 E-value=24 Score=27.83 Aligned_cols=71 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..+++.....+.+...+..+...+.++|++++.++. .+ ++ . ++.+. ..++|+++
T Consensus 78 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~---~~--~~-~---~~~l~-~~~iPvV~ 147 (332)
T 2o20_A 78 FAAITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSS---LD--EK-I---RTSLK-NSRTPVVL 147 (332)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSC---CC--HH-H---HHHHH-HHCCCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCC---CC--HH-H---HHHHH-hCCCCEEE
Confidence 344555555544 6677666666667777777888888899999998653 12 32 2 33333 45899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
.|.+
T Consensus 148 ~~~~ 151 (332)
T 2o20_A 148 VGTI 151 (332)
T ss_dssp ESCC
T ss_pred Eccc
Confidence 9864
No 469
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}
Probab=74.16 E-value=12 Score=30.56 Aligned_cols=98 Identities=9% Similarity=0.089 Sum_probs=62.0
Q ss_pred HHHHHHHHhc-CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 14 KIISTLRQET-KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 14 ~l~~~~~~~~-~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+.++.+.+.. ++++.+-+ ++-+.++ +++++..++.|++.+ --|. .+. + .+.++.+.+++++||+.=.
T Consensus 171 ~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i--EqP~--~~~--d---~~~~~~l~~~~~ipIa~dE- 239 (369)
T 2zc8_A 171 EVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRLDYI--EQPL--AYD--D---LLDHAKLQRELSTPICLDE- 239 (369)
T ss_dssp HHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCCSCE--ECCS--CTT--C---SHHHHHHHHHCSSCEEEST-
T ss_pred HHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCCcEE--ECCC--Ccc--c---HHHHHHHHhhCCCCEEEcC-
Confidence 4456665555 67777755 3346677 888888888776633 3443 111 1 3456777778889987633
Q ss_pred CCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 92 TFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 92 P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
.-.+++.+.++.+ .-+++-+|-+ .+....++
T Consensus 240 -----~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 275 (369)
T 2zc8_A 240 -----SLTGAEKARKAIELGAGRVFNVKPARLGGHGESLRV 275 (369)
T ss_dssp -----TCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred -----ccCCHHHHHHHHHhCCCCEEEEchhhhCCHHHHHHH
Confidence 2346778888873 4689999987 45444333
No 470
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=74.11 E-value=8 Score=30.91 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC--CCCEEE
Q psy9711 34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS--PIPVII 88 (198)
Q Consensus 34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~--~~pi~l 88 (198)
-+.+...+++++..+.|+|++++..-.-..+++|.+|-.+..+.+.+.+ ++||+.
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 77 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVT 77 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 3445555666666666666666554332222223666666666655554 255554
No 471
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=73.91 E-value=29 Score=26.97 Aligned_cols=127 Identities=11% Similarity=0.062 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCC
Q psy9711 15 IISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFV 94 (198)
Q Consensus 15 l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~ 94 (198)
-++.+.+.+++||+.+-.-.+.. ++..|.++|||+|++..-... +++.++++ .+...++.+++--.
T Consensus 97 ~l~~i~~~v~lPvl~kdfI~d~~----qi~~a~~~GAD~VlL~~~~l~------~~l~~l~~-~a~~lGl~~lvev~--- 162 (254)
T 1vc4_A 97 DLKRVREAVDLPLLRKDFVVDPF----MLEEARAFGASAALLIVALLG------ELTGAYLE-EARRLGLEALVEVH--- 162 (254)
T ss_dssp HHHHHHHHCCSCEEEESCCCSHH----HHHHHHHTTCSEEEEEHHHHG------GGHHHHHH-HHHHHTCEEEEEEC---
T ss_pred HHHHHHHhcCCCEEECCcCCCHH----HHHHHHHcCCCEEEECccchH------HHHHHHHH-HHHHCCCeEEEEEC---
Confidence 34444444599998865544443 345577899999999754322 22222222 22234665553211
Q ss_pred cccccCHHHHHHHHc-CCCEEEEeeC-------CHHHHHHHHhhcCCC---CeEEE--ecCh--hhHHHHhhcCCCeEEe
Q psy9711 95 TNIDISVDTLVKLAH-HENIRGVKDT-------DNIKLANMANQTKDL---NFSVF--AGSA--GYLLSGLLVGCAGGIN 159 (198)
Q Consensus 95 tg~~l~~~~l~~L~~-~p~i~giK~s-------d~~~~~~~~~~~~~~---~~~v~--~G~d--~~~~~~l~~G~~G~is 159 (198)
+.+.+.+..+ -+.++|+..- |+..+.++... .++ ++.++ +|-. +.+..... |++|++-
T Consensus 163 -----~~~E~~~a~~~gad~IGvn~~~l~~~~~dl~~~~~L~~~-i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 163 -----TERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRL-ARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp -----SHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHHHH-HHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred -----CHHHHHHHHHcCCCEEEEccccCcCCCCCHHHHHHHHHh-CccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 2233444443 4688898552 66666665532 221 33333 3433 24555567 9999998
Q ss_pred ccc
Q psy9711 160 ALS 162 (198)
Q Consensus 160 ~~~ 162 (198)
|.+
T Consensus 236 GsA 238 (254)
T 1vc4_A 236 GTS 238 (254)
T ss_dssp CHH
T ss_pred eHH
Confidence 875
No 472
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=73.86 E-value=8.5 Score=29.35 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC--CcCCCCCHHHHHHHHHHHHccCCCCEEEEeCCCCcccccCHHHHHHHHcCC--CE
Q psy9711 38 ATIDLTQKAAKAGANAALILCPY--YFQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHE--NI 113 (198)
Q Consensus 38 ~~i~~a~~a~~~Gad~v~~~~P~--y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~p--~i 113 (198)
+.++.++.+++.|++.+.+.+-. ..... . -.+.++.+.+.+++||+. .|---+++.+.++.+.. ++
T Consensus 150 ~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g--~--~~~~~~~l~~~~~ipvia------~GGI~~~~d~~~~~~~~~~Ga 219 (244)
T 2y88_A 150 DLWDVLERLDSEGCSRFVVTDITKDGTLGG--P--NLDLLAGVADRTDAPVIA------SGGVSSLDDLRAIATLTHRGV 219 (244)
T ss_dssp EHHHHHHHHHHTTCCCEEEEETTTTTTTSC--C--CHHHHHHHHTTCSSCEEE------ESCCCSHHHHHHHHTTGGGTE
T ss_pred CHHHHHHHHHhCCCCEEEEEecCCccccCC--C--CHHHHHHHHHhCCCCEEE------ECCCCCHHHHHHHHhhccCCC
Confidence 45677777777788877765411 11011 1 134556666666777665 23233457777776542 55
Q ss_pred EEEeeC
Q psy9711 114 RGVKDT 119 (198)
Q Consensus 114 ~giK~s 119 (198)
.|+=-.
T Consensus 220 d~v~vG 225 (244)
T 2y88_A 220 EGAIVG 225 (244)
T ss_dssp EEEEEC
T ss_pred CEEEEc
Confidence 555443
No 473
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=73.82 E-value=8 Score=33.91 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHH
Q psy9711 13 LKIISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHF 75 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~ 75 (198)
.++++.+.+.+++|||+.=+-.+.++..++.+. .|++++++..-.|..+ .+-+++.+|.
T Consensus 485 ~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~---~G~~gvivg~a~~~~~-~~~~e~~~~l 543 (555)
T 1jvn_A 485 LELIEHVKDAVKIPVIASSGAGVPEHFEEAFLK---TRADACLGAGMFHRGE-FTVNDVKEYL 543 (555)
T ss_dssp HHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHH---SCCSEEEESHHHHTTS-CCHHHHHHHH
T ss_pred HHHHHHHHHhCCccEEEECCCCCHHHHHHHHHh---cCChHHHHHHHHHcCC-CCHHHHHHHH
Confidence 456667766669999997666677776665543 6999999998776654 2477777764
No 474
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=73.80 E-value=13 Score=28.01 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEEEeCCCCcccccCHH
Q psy9711 24 KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVIIYNNTFVTNIDISVD 102 (198)
Q Consensus 24 ~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~lYn~P~~tg~~l~~~ 102 (198)
+++++.|+.+ ..| +..|.+.|+|.+-+. | . . .-+=.++.+.+.... ++|++- ..| ++++
T Consensus 104 g~~~i~G~~t--~~e----~~~A~~~Gad~v~~f-p---a-~--~~gG~~~lk~l~~~~~~ipvva-----iGG--I~~~ 163 (207)
T 2yw3_A 104 GVPYLPGVLT--PTE----VERALALGLSALKFF-P---A-E--PFQGVRVLRAYAEVFPEVRFLP-----TGG--IKEE 163 (207)
T ss_dssp TCCEEEEECS--HHH----HHHHHHTTCCEEEET-T---T-T--TTTHHHHHHHHHHHCTTCEEEE-----BSS--CCGG
T ss_pred CCCEEecCCC--HHH----HHHHHHCCCCEEEEe-c---C-c--cccCHHHHHHHHhhCCCCcEEE-----eCC--CCHH
Confidence 7888888543 333 466677899999883 3 1 1 111146677777776 688764 234 4456
Q ss_pred HHHHHHcC
Q psy9711 103 TLVKLAHH 110 (198)
Q Consensus 103 ~l~~L~~~ 110 (198)
.+.++.+.
T Consensus 164 n~~~~l~a 171 (207)
T 2yw3_A 164 HLPHYAAL 171 (207)
T ss_dssp GHHHHHTC
T ss_pred HHHHHHhC
Confidence 77777754
No 475
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=73.71 E-value=9.1 Score=30.70 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeC
Q psy9711 6 KSTEEEKLKIISTLRQET-KKTIIAGT 31 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv 31 (198)
++..+.-+++++..++.. ..-++.|.
T Consensus 29 ~iD~~~l~~lv~~li~~Gv~gl~v~Gt 55 (301)
T 1xky_A 29 NIDFAKTTKLVNYLIDNGTTAIVVGGT 55 (301)
T ss_dssp SBCHHHHHHHHHHHHHTTCCEEEESST
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcc
Confidence 344555555555555543 33333443
No 476
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=73.62 E-value=13 Score=31.15 Aligned_cols=103 Identities=9% Similarity=0.026 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCE
Q psy9711 10 EEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPV 86 (198)
Q Consensus 10 ~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi 86 (198)
++-.+.++.+.++. ++.+++-+ +.-+.++++++++..++.+... +--|.- +++ .+-++.|.+++++||
T Consensus 205 ~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~--iEeP~~------~~d-~~~~~~l~~~~~ipI 275 (421)
T 4hnl_A 205 ETTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQFAKAAEPYQLFF--LEDILP------PDQ-SHWLTQLRSQSATPI 275 (421)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSE--EECCSC------GGG-GGGHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHhCCCceEeccccccCCHHHHHHHHHHhhhhhhcc--cccCCc------ccc-hHHHHHHHhcCCCCe
Confidence 34456677777777 78888855 5668999999999999987553 333431 222 355788999999999
Q ss_pred EEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC---CHHHHHHH
Q psy9711 87 IIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 87 ~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s---d~~~~~~~ 127 (198)
..=.. ..+...+.++.+ .-+++-+|-+ -+....++
T Consensus 276 a~dE~------~~~~~~~~~~i~~~a~d~v~~d~~~~GGite~~~i 315 (421)
T 4hnl_A 276 ATGEL------FNNPMEWQELVKNRQIDFMRAHVSQIGGITPALKL 315 (421)
T ss_dssp EECTT------CCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHH
T ss_pred ecCcc------eehhHHHHHHHhcCCceEEEeCCCCCCCHHHHHHH
Confidence 87321 235666777774 4578888887 44444443
No 477
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=73.58 E-value=7.9 Score=31.43 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
|.+|+++-+..=.+-|||.+|+=|-..+ .+-.+++.+.+++|+..||.
T Consensus 224 N~~EAlre~~~Di~EGAD~vMVKPal~Y---------LDIi~~vk~~~~~P~aaYqV 271 (323)
T 1l6s_A 224 NRREAIRESLLDEAQGADCLMVKPAGAY---------LDIVRELRERTELPIGAYQV 271 (323)
T ss_dssp CHHHHHHHHHHHHHTTCSBEEEESCTTC---------HHHHHHHHTTCSSCEEEEEC
T ss_pred CHHHHHHHHHhhHHhCCceEEEecCcch---------hHHHHHHHHhcCCCeEEEEc
Confidence 4688888887777779999999865433 24566888888999999995
No 478
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=73.36 E-value=5.8 Score=32.95 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 11 EKLKIISTLRQETKKTIIAG-TYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 11 Er~~l~~~~~~~~~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
...+.++.+++..++||++. ++...+ .+.++.+.++|+|++.+..-
T Consensus 193 ~~~~~I~~l~~~~~~PVivK~vg~g~s---~e~A~~l~~aGad~I~V~g~ 239 (365)
T 3sr7_A 193 SWKKHLSDYAKKLQLPFILKEVGFGMD---VKTIQTAIDLGVKTVDISGR 239 (365)
T ss_dssp HHHHHHHHHHHHCCSCEEEEECSSCCC---HHHHHHHHHHTCCEEECCCB
T ss_pred HHHHHHHHHHHhhCCCEEEEECCCCCC---HHHHHHHHHcCCCEEEEeCC
Confidence 45577788877669999985 654333 35577888999999998643
No 479
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=73.28 E-value=4.8 Score=30.38 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHhcCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEE--cCCCCcCCCCCHHHHHHHHHHHHccCC-CCEEE
Q psy9711 16 ISTLRQETKKTIIAGTYCESTRATIDLTQKAAKAGANAALI--LCPYYFQKKMTEDLIYEHFISVADNSP-IPVII 88 (198)
Q Consensus 16 ~~~~~~~~~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~--~~P~y~~~~~~~~~i~~y~~~i~~~~~-~pi~l 88 (198)
+..+.+..+. +++|++..+..+ ++.+.+.|+|.+++ ..|...++......-.++++.+.+.++ +|++.
T Consensus 107 ~~~~~~~~g~-~~~~~s~~t~~e----~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia 177 (227)
T 2tps_A 107 AKEVRAAIGD-MILGVSAHTMSE----VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVG 177 (227)
T ss_dssp HHHHHHHHTT-SEEEEEECSHHH----HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHhcCC-cEEEEecCCHHH----HHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEE
No 480
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=73.22 E-value=38 Score=27.92 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=65.4
Q ss_pred CCeEEEe-CCCCcHHHHHHHHHHHHhcCCC----EEEEcCCCCcCCCCC------------------HHHHHHHHHHH--
Q psy9711 24 KKTIIAG-TYCESTRATIDLTQKAAKAGAN----AALILCPYYFQKKMT------------------EDLIYEHFISV-- 78 (198)
Q Consensus 24 ~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad----~v~~~~P~y~~~~~~------------------~~~i~~y~~~i-- 78 (198)
|.-||+| ++-.+.+.+++.|+..++++.. -.+++--||+||- | -++=++..+++
T Consensus 53 rllvIaGPCsie~~e~aleyA~~L~~~~~~l~d~l~ivmR~yfeKPR-Ts~g~kGl~~dP~ld~s~~i~~GL~ilr~ll~ 131 (350)
T 1n8f_A 53 RLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPR-TTVGWKGLINDPHMDNSFQINDGLRIARKLLL 131 (350)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTTTTEEEEEECCCCCCC-SSSSCCCTTTCTTSSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCcCCCHHHHHHHHHHHHHHHHhhccCeEEEEEeccccCc-CCcCcCCCCCCCCccccccHHHHHHHHHHHHH
Confidence 4668888 6667888999999888877654 4445555556652 2 26667888888
Q ss_pred -HccCCCCEEEE--e---------------CCCCcccccCHHHHHHHH-cCCCEEEEeeC---CHHHHHHH
Q psy9711 79 -ADNSPIPVIIY--N---------------NTFVTNIDISVDTLVKLA-HHENIRGVKDT---DNIKLANM 127 (198)
Q Consensus 79 -~~~~~~pi~lY--n---------------~P~~tg~~l~~~~l~~L~-~~p~i~giK~s---d~~~~~~~ 127 (198)
...+++|+.-= + +|.++ ..-..+.+++ ....-||+|.. ++..+...
T Consensus 132 ~~~e~GlPv~TEvld~~~~~~vad~vd~~qIGAR~---~esq~hr~~asg~~~PVg~Kngt~g~i~~~l~A 199 (350)
T 1n8f_A 132 DINDSGLPAAGEFLDMITPQYLADLMSWGAIGART---TESQVHRELASGLSCPVGFKNGTDGTIKVAIDA 199 (350)
T ss_dssp HHHHTTCCEEEECCCSSTHHHHGGGCSEEEECTTT---TTCHHHHHHHHTCSSCEEEECCTTCCSHHHHHH
T ss_pred HHHHhCCceEEeecCcccHHHHhhcCcEEEECCcc---ccCHHHHHHHhcCCCeEEEecCCCCCHHHHHHH
Confidence 77889998732 1 12221 1123455555 78999999999 55544443
No 481
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=73.18 E-value=15 Score=28.32 Aligned_cols=69 Identities=7% Similarity=0.172 Sum_probs=42.7
Q ss_pred HHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
++++-+.+++ +..+++..+..+.+...+..+...+.++|++++.++.. + . . .++.+. ..++|+++.|
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~--~-~---~~~~l~-~~~iPvV~~~ 94 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINY---N--D-P---RVQFLL-KQKFPFVAFG 94 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCT---T--C-H---HHHHHH-HTTCCEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCC---C--c-H---HHHHHH-hcCCCEEEEC
Confidence 3444444444 66666655444555556677777888999999986532 1 2 2 233333 3689999998
Q ss_pred CC
Q psy9711 91 NT 92 (198)
Q Consensus 91 ~P 92 (198)
.+
T Consensus 95 ~~ 96 (287)
T 3bbl_A 95 RS 96 (287)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 482
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=73.14 E-value=15 Score=28.31 Aligned_cols=71 Identities=4% Similarity=0.072 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..+++.....+.+...+..+...+.++|++++.++. .+ . +. ++.+ ...++|+++
T Consensus 25 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~~--~-~~---~~~l-~~~~iPvV~ 94 (288)
T 3gv0_A 25 TSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIE---PN--D-PR---VRFM-TERNMPFVT 94 (288)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCC---TT--C-HH---HHHH-HHTTCCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCC---CC--c-HH---HHHH-hhCCCCEEE
Confidence 455666555555 6677665554444444555566677899999998643 11 2 22 3333 246899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
.|.+
T Consensus 95 i~~~ 98 (288)
T 3gv0_A 95 HGRS 98 (288)
T ss_dssp ESCC
T ss_pred ECCc
Confidence 9864
No 483
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=73.13 E-value=19 Score=27.31 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..++......+.+...+..+...+.++|++++.++. .+ + +. ++.+. ..++|+++
T Consensus 18 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~---~~--~-~~---~~~l~-~~~iPvV~ 87 (275)
T 3d8u_A 18 CAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSE---HS--Q-RT---HQLLE-ASNTPVLE 87 (275)
T ss_dssp HHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSC---CC--H-HH---HHHHH-HHTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCC---CC--H-HH---HHHHH-hCCCCEEE
Confidence 344555555544 6666555555566777777888888899999988653 12 3 23 33333 35899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
.+.+
T Consensus 88 ~~~~ 91 (275)
T 3d8u_A 88 IAEL 91 (275)
T ss_dssp ESSS
T ss_pred Eeec
Confidence 9863
No 484
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=73.12 E-value=7.3 Score=29.79 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=6.3
Q ss_pred cCHHHHHHHHc
Q psy9711 99 ISVDTLVKLAH 109 (198)
Q Consensus 99 l~~~~l~~L~~ 109 (198)
+..+.+.++++
T Consensus 177 ~~~~~~~~i~~ 187 (244)
T 1vzw_A 177 PNLELLKNVCA 187 (244)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45566666653
No 485
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=73.08 E-value=24 Score=28.47 Aligned_cols=43 Identities=5% Similarity=-0.078 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEcCC
Q psy9711 13 LKIISTLRQETKKTIIAG-TYCESTRATIDLTQKAAKAGANAALILCP 59 (198)
Q Consensus 13 ~~l~~~~~~~~~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~~P 59 (198)
.+.++.+++ .++||++- ++...+ .+.++.++++|+|++.+..-
T Consensus 171 ~~~i~~vr~-~~~Pv~vK~v~~g~~---~e~a~~~~~~G~d~I~vs~~ 214 (332)
T 1vcf_A 171 VERLAELLP-LPFPVMVKEVGHGLS---REAALALRDLPLAAVDVAGA 214 (332)
T ss_dssp HHHHHHHCS-CSSCEEEECSSSCCC---HHHHHHHTTSCCSEEECCCB
T ss_pred HHHHHHHHc-CCCCEEEEecCCCCC---HHHHHHHHHcCCCEEEeCCC
Confidence 456777776 68999985 654322 34577899999999999753
No 486
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=73.08 E-value=9.7 Score=30.18 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
+.++++++++...+.|||-+=+-.-.-..-. .+.+....+.|.+.+++|+.+-
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE--~~rv~~vi~~l~~~~~~pisID 84 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPTADDP--VRVMEWLVKTIQEVVDLPCCLD 84 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSCSSCH--HHHHHHHHHHHHHHCCCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCchhH--HHHHHHHHHHHHHhCCCeEEEe
Confidence 4688999999999999999998865422222 6678888899988889999984
No 487
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=72.96 E-value=30 Score=27.51 Aligned_cols=71 Identities=7% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEE
Q psy9711 12 KLKIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVII 88 (198)
Q Consensus 12 r~~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~l 88 (198)
..++++-+.+++ +..+++.....+.+...+..+...+.++|++++.++.. .++ .++.+. ..++|+++
T Consensus 81 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~------~~~---~~~~l~-~~~iPvV~ 150 (348)
T 3bil_A 81 FAAMVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEE------CAN---QLEDLQ-KQGMPVVL 150 (348)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGG------GHH---HHHHHH-HC-CCEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC------ChH---HHHHHH-hCCCCEEE
Confidence 344555555544 56665555555666677778888888999999976431 222 233333 36899999
Q ss_pred EeCC
Q psy9711 89 YNNT 92 (198)
Q Consensus 89 Yn~P 92 (198)
.|.+
T Consensus 151 i~~~ 154 (348)
T 3bil_A 151 VDRE 154 (348)
T ss_dssp ESSC
T ss_pred Eccc
Confidence 9864
No 488
>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1
Probab=72.82 E-value=14 Score=30.33 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHhc--CCeEEEeC-CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCC
Q psy9711 8 TEEEKLKIISTLRQET--KKTIIAGT-YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPI 84 (198)
Q Consensus 8 t~~Er~~l~~~~~~~~--~~pvi~gv-~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~ 84 (198)
+.++-.+.++.+++.. ++.+++-+ ++-+.+++++.++..++.+.. .+--|.- + ++ .+-++.+.+++++
T Consensus 170 ~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~--~iEeP~~--~----~d-~~~~~~l~~~~~i 240 (370)
T 2chr_A 170 SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVE--LIEQPVG--R----EN-TQALRRLSDNNRV 240 (370)
T ss_dssp CHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCC--EEECCSC--S----SC-HHHHHHHHHHCSS
T ss_pred ChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcCCc--eecCCCC--h----hh-hhhhhHHhhhccC
Confidence 5566667777777776 67777754 445778888888888887654 3445541 1 11 2456778888888
Q ss_pred CEEEEeCCCCcccccCHHHHHHHHc--CCCEEEEeeC
Q psy9711 85 PVIIYNNTFVTNIDISVDTLVKLAH--HENIRGVKDT 119 (198)
Q Consensus 85 pi~lYn~P~~tg~~l~~~~l~~L~~--~p~i~giK~s 119 (198)
||..=.. -.+...+.++.+ .-.++-+|-+
T Consensus 241 pIa~dE~------~~~~~~~~~~~~~~a~d~i~~d~~ 271 (370)
T 2chr_A 241 AIMADES------LSTLASAFDLARDRSVDVFSLKLC 271 (370)
T ss_dssp EEEESSS------CCSHHHHHHHHTTTCCSEECCCHH
T ss_pred CccCCcc------CCCHHHHHHHHHcCCCcEEEeCCc
Confidence 8876332 245677778774 3467777766
No 489
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=72.81 E-value=37 Score=28.12 Aligned_cols=80 Identities=5% Similarity=-0.071 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHhc---C--CeEEEeCC---CCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHH
Q psy9711 6 KSTEEEKLKIISTLRQET---K--KTIIAGTY---CESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFIS 77 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~---~--~pvi~gv~---~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~ 77 (198)
..|.+|-.+.++.+++.+ + ..|..+.. ..+.+..++.++.+.++ ++.+.+.-- .... +|.++.+.++.
T Consensus 106 ~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~DT-~G~~--~P~~~~~lv~~ 181 (382)
T 2ztj_A 106 GRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-VDRVGLADT-VGVA--TPRQVYALVRE 181 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-CSEEEEEET-TSCC--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-cCEEEecCC-CCCC--CHHHHHHHHHH
Confidence 356677556666666655 5 77766643 33467889999999999 997766433 2333 38999999999
Q ss_pred HHcc--CCCCEEEE
Q psy9711 78 VADN--SPIPVIIY 89 (198)
Q Consensus 78 i~~~--~~~pi~lY 89 (198)
+.+. .++||-++
T Consensus 182 l~~~~~~~~~i~~H 195 (382)
T 2ztj_A 182 VRRVVGPRVDIEFH 195 (382)
T ss_dssp HHHHHTTTSEEEEE
T ss_pred HHHhcCCCCeEEEE
Confidence 8887 67888776
No 490
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=72.68 E-value=33 Score=27.03 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=43.1
Q ss_pred CCeEEEeCCCCcH--------HHHHHHHHHHHhcCCCEEEEcC-CCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 24 KKTIIAGTYCEST--------RATIDLTQKAAKAGANAALILC-PYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 24 ~~pvi~gv~~~~~--------~~~i~~a~~a~~~Gad~v~~~~-P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+..||+=+--.|. .+..++++.+++.||+++.+.. |.|+. +-.++.+.+.+++++||+.-+
T Consensus 51 ~~~~IaE~K~asPs~g~i~~~~~p~~~A~~y~~~GA~~isvltd~~~f~------Gs~~~l~~ir~~v~lPvl~kd 120 (272)
T 3qja_A 51 GIGVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQ------GSLDDLDAVRASVSIPVLRKD 120 (272)
T ss_dssp SCEEEEEEC-------------CHHHHHHHHHHTTCSEEEEECCGGGHH------HHHHHHHHHHHHCSSCEEEES
T ss_pred CCeEEEEEecCCCCCCccCCCCCHHHHHHHHHHcCCCEEEEecChhhcC------CCHHHHHHHHHhCCCCEEECc
Confidence 5678887744442 3568899999999999999874 33433 334688888888999999665
No 491
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=72.65 E-value=8 Score=31.10 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeCCCC----cHHHHHHHHHHHHhc
Q psy9711 6 KSTEEEKLKIISTLRQET-KKTIIAGTYCE----STRATIDLTQKAAKA 49 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv~~~----~~~~~i~~a~~a~~~ 49 (198)
++..+.-.++++..++.. ..-++.|..+. +.+|-.+.++.+.+.
T Consensus 32 ~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~ 80 (304)
T 3l21_A 32 SLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEA 80 (304)
T ss_dssp CBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHH
Confidence 455566666666666553 33344454443 345555555555443
No 492
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=72.63 E-value=8.7 Score=30.64 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEeC
Q psy9711 6 KSTEEEKLKIISTLRQET-KKTIIAGT 31 (198)
Q Consensus 6 ~Lt~~Er~~l~~~~~~~~-~~pvi~gv 31 (198)
++..+.-+++++..++.. ..-++.|.
T Consensus 18 ~iD~~~l~~lv~~li~~Gv~gl~~~Gt 44 (292)
T 2ojp_A 18 NVCRASLKKLIDYHVASGTSAIVSVGT 44 (292)
T ss_dssp CBCHHHHHHHHHHHHHHTCCEEEESST
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcc
Confidence 445555555555555553 33334443
No 493
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=72.48 E-value=23 Score=27.16 Aligned_cols=53 Identities=8% Similarity=0.001 Sum_probs=37.3
Q ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeCC
Q psy9711 32 YCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNNT 92 (198)
Q Consensus 32 ~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~P 92 (198)
...+.+...+..+.+.+.++|++++.+... +.....++.+. ..++|++++|.+
T Consensus 51 ~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-------~~~~~~~~~~~-~~~iPvV~~~~~ 103 (304)
T 3gbv_A 51 DPYDYNSFVATSQAVIEEQPDGVMFAPTVP-------QYTKGFTDALN-ELGIPYIYIDSQ 103 (304)
T ss_dssp CSSCHHHHHHHHHHHHTTCCSEEEECCSSG-------GGTHHHHHHHH-HHTCCEEEESSC
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCh-------HHHHHHHHHHH-HCCCeEEEEeCC
Confidence 445777778888889999999999986532 12223444443 348999999874
No 494
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=72.41 E-value=16 Score=25.48 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHHHHhc---CCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEe
Q psy9711 14 KIISTLRQET---KKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90 (198)
Q Consensus 14 ~l~~~~~~~~---~~pvi~gv~~~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn 90 (198)
+.++.+.+.. ++++-.-+...+..+.| .+.|++.++|-+++......... .--+-.--+.|...++.||++..
T Consensus 83 ~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I--~~~a~~~~~dlIV~G~~g~~~~~--~~~~GSv~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 83 NKMENIKKELEDVGFKVKDIIVVGIPHEEI--VKIAEDEGVDIIIMGSHGKTNLK--EILLGSVTENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEECHHHHH--HHHHHHTTCSEEEEESCCSSCCT--TCSSCHHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHHHHHHcCCceEEEEcCCCHHHHH--HHHHHHcCCCEEEEcCCCCCCcc--ceEecchHHHHHHhCCCCEEEEe
Confidence 3445444443 55543333223454443 56778899999999866432221 10111345677778899999976
Q ss_pred CC
Q psy9711 91 NT 92 (198)
Q Consensus 91 ~P 92 (198)
.+
T Consensus 159 ~~ 160 (162)
T 1mjh_A 159 RK 160 (162)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 495
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=72.30 E-value=5.2 Score=33.25 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=29.7
Q ss_pred HHHHHHHHHhc-CCeEEEe-CCCCcHHHHHHHHHHHHhcCCCEEEEc
Q psy9711 13 LKIISTLRQET-KKTIIAG-TYCESTRATIDLTQKAAKAGANAALIL 57 (198)
Q Consensus 13 ~~l~~~~~~~~-~~pvi~g-v~~~~~~~~i~~a~~a~~~Gad~v~~~ 57 (198)
.+.++.+.+.. ++||++| +.+ .+.++.+.++|||++.+.
T Consensus 129 ~e~I~~ir~~~~~~~Vi~G~V~T------~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 129 GKTLKSLRQLLGSRCIMAGNVAT------YAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECS------HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhcCCCeEEEcCcCC------HHHHHHHHHcCCCEEEEc
Confidence 45677777766 8999996 542 345788889999999984
No 496
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=72.28 E-value=38 Score=27.51 Aligned_cols=187 Identities=16% Similarity=0.124 Sum_probs=100.2
Q ss_pred CccCCCCHHHHHHHHH-HHHHhcCCe---EEEeCCCCcHHHHHHH-------------------------HHHHHhcCCC
Q psy9711 2 SNSFKSTEEEKLKIIS-TLRQETKKT---IIAGTYCESTRATIDL-------------------------TQKAAKAGAN 52 (198)
Q Consensus 2 gE~~~Lt~~Er~~l~~-~~~~~~~~p---vi~gv~~~~~~~~i~~-------------------------a~~a~~~Gad 52 (198)
++...+|.+++.++++ ...+. +++ +-.++......+.++. ++.|.++|+|
T Consensus 33 ~~~~~~~~~~k~~i~~~~L~~~-Gv~~IE~g~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~~~~~i~~a~~~g~~ 111 (337)
T 3ble_A 33 TRGVSFSTSEKLNIAKFLLQKL-NVDRVEIASARVSKGELETVQKIMEWAATEQLTERIEILGFVDGNKTVDWIKDSGAK 111 (337)
T ss_dssp STTCCCCHHHHHHHHHHHHHTT-CCSEEEEEETTSCTTHHHHHHHHHHHHHHTTCGGGEEEEEESSTTHHHHHHHHHTCC
T ss_pred CCCCCcCHHHHHHHHHHHHHHc-CCCEEEEeCCCCChhHHHHHHHHHhhhhhhccCCCCeEEEEccchhhHHHHHHCCCC
Confidence 4667789999999988 66554 433 3223332322233332 3445567788
Q ss_pred EEEEcCCCCc-----CCCCCHHHHHHHHHHHHcc---CCCCEEEEeCCC-CcccccCHHHHHHHH----cC-CCEEEEee
Q psy9711 53 AALILCPYYF-----QKKMTEDLIYEHFISVADN---SPIPVIIYNNTF-VTNIDISVDTLVKLA----HH-ENIRGVKD 118 (198)
Q Consensus 53 ~v~~~~P~y~-----~~~~~~~~i~~y~~~i~~~---~~~pi~lYn~P~-~tg~~l~~~~l~~L~----~~-p~i~giK~ 118 (198)
.+-+..+... +...|.++.++-++++++. .++.+.++ .+. ......+++.+.+++ +. ...+.++|
T Consensus 112 ~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~D 190 (337)
T 3ble_A 112 VLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVY-LEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLPD 190 (337)
T ss_dssp EEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEE-EETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE-EEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 7766544321 1123466666666666643 36666654 322 002234566554444 43 58999999
Q ss_pred C----CHHHHHHHHh---hcC-CCCeEEEecChh------hHHHHhhcCCC---eEEeccc----ccchHHHHHHHHHH-
Q psy9711 119 T----DNIKLANMAN---QTK-DLNFSVFAGSAG------YLLSGLLVGCA---GGINALS----AVLGGPICELYDLA- 176 (198)
Q Consensus 119 s----d~~~~~~~~~---~~~-~~~~~v~~G~d~------~~~~~l~~G~~---G~is~~~----n~~P~~~~~l~~~~- 176 (198)
+ .+..+.++++ +.. +-.+.+= +.+. ..+.++..|++ +.++|++ |..-+.++...+..
T Consensus 191 T~G~~~P~~v~~lv~~l~~~~p~~~i~~H-~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG~~aGN~~~E~lv~~L~~~~ 269 (337)
T 3ble_A 191 TLGVLSPEETFQGVDSLIQKYPDIHFEFH-GHNDYDLSVANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTIHDKS 269 (337)
T ss_dssp TTCCCCHHHHHHHHHHHHHHCTTSCEEEE-CBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHHHHHhcCCCeEEEE-ecCCcchHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHHhc
Confidence 9 6666655542 223 2344443 2221 34567888974 4445444 67777776666554
Q ss_pred --HcC-CHHHHHHHHHHh
Q psy9711 177 --KAG-KWEEAMKLQHRL 191 (198)
Q Consensus 177 --~~g-d~~~A~~l~~~~ 191 (198)
..| |.++-.++.+.+
T Consensus 270 g~~tgidl~~L~~~~~~v 287 (337)
T 3ble_A 270 NSKTNINEIAITEASRLV 287 (337)
T ss_dssp SCCCCCCGGGHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHH
Confidence 112 454444444433
No 497
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=72.17 E-value=8.7 Score=30.72 Aligned_cols=59 Identities=5% Similarity=0.122 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCeEE-EeCCCC-cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHH
Q psy9711 14 KIISTLRQETKKTII-AGTYCE-STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISV 78 (198)
Q Consensus 14 ~l~~~~~~~~~~pvi-~gv~~~-~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i 78 (198)
++++.+.+..++||+ +..|+- +.+++.+ +.++|||++++....+..++ +....+-|.+.
T Consensus 197 ~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~----~~~~GadgV~vGsai~~~~~--p~~~~~~l~~~ 257 (305)
T 2nv1_A 197 ELLLQIKKDGKLPVVNFAAGGVATPADAAL----MMQLGADGVFVGSGIFKSDN--PAKFAKAIVEA 257 (305)
T ss_dssp HHHHHHHHHTSCSSCEEBCSCCCSHHHHHH----HHHTTCSCEEECGGGGGSSC--HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeccCCCCHHHHHH----HHHcCCCEEEEcHHHHcCCC--HHHHHHHHHHH
Confidence 455555554488986 245555 4555433 34579999999998887665 65555444443
No 498
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=72.11 E-value=6.9 Score=32.16 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEEeC
Q psy9711 35 STRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYNN 91 (198)
Q Consensus 35 ~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lYn~ 91 (198)
+.+|+++-+..=.+-|||.+|+=|-..+ .+-.+++.+.+++|+..||.
T Consensus 245 N~~EAlrE~~lDi~EGAD~vMVKPal~Y---------LDIi~~vk~~~~~PvaaYqV 292 (356)
T 3obk_A 245 NSREAEREAEADASEGADMLMVKPGLPY---------LDVLAKIREKSKLPMVAYHV 292 (356)
T ss_dssp CSHHHHHHHHHHHHTTCSEEEEESSGGG---------HHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHHHHHhhHhcCCCEEEecCCCcH---------HHHHHHHHhcCCCCEEEEEc
Confidence 3578887777777779999999765432 24456666778999999994
No 499
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=72.08 E-value=8.5 Score=30.34 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccCCCCEEEE
Q psy9711 34 ESTRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIY 89 (198)
Q Consensus 34 ~~~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~~~pi~lY 89 (198)
.+.+.++++++...+.|||-+=+..-.-.... ++++.+....|.+.+++||.+-
T Consensus 22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~~~v~~--~ee~~rvv~~i~~~~~~pisID 75 (262)
T 1f6y_A 22 RDPAPVQEWARRQEEGGARALDLNVGPAVQDK--VSAMEWLVEVTQEVSNLTLCLD 75 (262)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEBCC----CH--HHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCh--HHHHHHHHHHHHHhCCCeEEEe
Confidence 36788999999999999999988852211122 7778888888877678998884
No 500
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=71.98 E-value=9.1 Score=30.88 Aligned_cols=53 Identities=15% Similarity=0.064 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCCCCHHHHHHHHHHHHccC-CCCEEE
Q psy9711 36 TRATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNS-PIPVII 88 (198)
Q Consensus 36 ~~~~i~~a~~a~~~Gad~v~~~~P~y~~~~~~~~~i~~y~~~i~~~~-~~pi~l 88 (198)
.+...+++++..+.|+|++++..-.-..+++|.+|-.+..+.+.+.+ ++||+.
T Consensus 28 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpVia 81 (313)
T 3dz1_A 28 DVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIV 81 (313)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 34444444444444444444443221111122444444444444443 244443
Done!