RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9711
(198 letters)
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
anthracis [TaxId: 1392]}
Length = 292
Score = 98.0 bits (243), Expect = 1e-25
Identities = 65/193 (33%), Positives = 113/193 (58%), Gaps = 5/193 (2%)
Query: 4 SFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
S T EEK+ + + K +IAGT +T A+IDLT+KA + G +A +++ PYY
Sbjct: 50 SPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 109
Query: 62 FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDN 121
K +++ +Y+HF ++A+++P+PV++YN + + ISVDT+V+L+ ENI +KD
Sbjct: 110 N--KPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGG 167
Query: 122 IKLANMA-NQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
L + +F+V++G G L + VG G ++ S V+G + E+ +AG+
Sbjct: 168 DVLTMTEIIEKTADDFAVYSGDDGLTLPAMAVGAKGIVSVASHVIGNEMQEMIAAFQAGE 227
Query: 181 WEEAMKLQHRLVK 193
+++A KL LV+
Sbjct: 228 FKKAQKLHQLLVR 240
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 85.7 bits (211), Expect = 6e-21
Identities = 50/191 (26%), Positives = 91/191 (47%), Gaps = 5/191 (2%)
Query: 4 SFKSTEEEKLKIISTLRQETKKTI--IAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
S +E ++ I IAGT +T I LTQ+ +G L + PYY
Sbjct: 48 SATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107
Query: 62 FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDT-D 120
+ +++ +Y+HF ++A+++ +P I+YN T D+ +T+ +LA +NI G+K+
Sbjct: 108 N--RPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLAKVKNIIGIKEATG 165
Query: 121 NIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGK 180
N+ N + +F + +G L + +G G I+ + V + ++ LA G
Sbjct: 166 NLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMCKLAAEGH 225
Query: 181 WEEAMKLQHRL 191
+ EA + RL
Sbjct: 226 FAEARVINQRL 236
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 79.6 bits (195), Expect = 1e-18
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 5/192 (2%)
Query: 4 SFKSTEEEKLKIISTLRQETKK--TIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
S +T+ EK++++ + + +IAG T +I L + A GA+ L++ PYY
Sbjct: 54 SPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYY 113
Query: 62 FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKLAHHENIRGVKDTDN 121
K + + HF +VAD + +P+++Y+ + + I DT+ LA H NI GVKD
Sbjct: 114 S--KPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALASHPNIVGVKD-AK 170
Query: 122 IKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLAKAGKW 181
L + A D + ++G L L +G G I+ ++ + G + EL +G
Sbjct: 171 ADLHSGAQIMADTGLAYYSGDDALNLPWLAMGATGFISVIAHLAAGQLRELLSAFGSGDI 230
Query: 182 EEAMKLQHRLVK 193
A K+ +
Sbjct: 231 ATARKINIAVAP 242
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 295
Score = 72.6 bits (177), Expect = 4e-16
Identities = 49/195 (25%), Positives = 98/195 (50%), Gaps = 9/195 (4%)
Query: 4 SFKSTEEEKLKIISTLRQ--ETKKTIIAGTYCESTRATIDLTQKAAKAGANAALILCPYY 61
S E+E+ K++S + + K +I G ST T+ L ++A K GAN L++ PYY
Sbjct: 48 SPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 107
Query: 62 FQKKMTEDLIYEHFISVADNSPIPVIIYNNTFVTNIDISVDTLVKL-AHHENIRGVKDT- 119
K T++ +Y+H+ +++ + + +++YN T +++ +T ++ A +N+ G+K+
Sbjct: 108 N--KPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEAN 165
Query: 120 ---DNIKLANMANQTKDLNFSVFAGSAGYLLSGLLVGCAGGINALSAVLGGPICELYDLA 176
D I + +F V++G+ L G G I+ +S V + EL
Sbjct: 166 PDIDQIDRTVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEY 225
Query: 177 KAGKWEEAMKLQHRL 191
+G E++ ++ +L
Sbjct: 226 FSGNLEKSREVHRKL 240
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 27.9 bits (60), Expect = 0.83
Identities = 7/54 (12%), Positives = 19/54 (35%)
Query: 37 RATIDLTQKAAKAGANAALILCPYYFQKKMTEDLIYEHFISVADNSPIPVIIYN 90
+ ++A K + L++ P F + D ++ + P + +
Sbjct: 29 QRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFL 82
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 26.1 bits (56), Expect = 3.8
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 78 VADNSPIPVIIYNNTFVTNIDISVDTLVKLAHH 110
+ IP N +T + ++ +K +
Sbjct: 340 LGGCGNIPTAYGANPTLTAMSLA----IKSCEY 368
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 25.4 bits (54), Expect = 5.6
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 40 IDLTQKAAKAGANAA----LILCPYYFQKKMTEDLIYEHFISVADNSPI 84
+D+ KAA GAN L L ++ + T++ + F P+
Sbjct: 28 LDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPV 76
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF
{Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 24.4 bits (53), Expect = 8.3
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 26 TIIAGTYCESTRATIDLTQKAAKAGANAALIL-----CP 59
T++ G+ A + AA + + + CP
Sbjct: 41 TVLRGSIDHVFDAAKAIYLHAANSEQHIVMNGTFSIGCP 79
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 24.9 bits (54), Expect = 8.5
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 12/54 (22%)
Query: 67 TEDLIYEHFISVADNSPIPVI----IYNNTFVTNIDISVDTLVKLAHHENIRGV 116
+DLI F+ N + + +S+D L+ A G+
Sbjct: 29 VDDLILPVFVLDGVNQRESIPSMPGVER--------LSIDQLLIEAEEWVALGI 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.378
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 683,539
Number of extensions: 29205
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 12
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)