Query psy9715
Match_columns 92
No_of_seqs 105 out of 206
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 17:46:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9715.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9715hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lvaa3 a.4.5.35 (A:511-574) C 48.8 3.7 0.00027 22.7 1.5 18 20-37 14-31 (64)
2 d1no1a_ a.179.1.1 (A:) Repliso 43.4 9 0.00066 21.6 2.6 20 16-35 46-65 (67)
3 d1jhfa1 a.4.5.2 (A:2-72) LexA 39.5 19 0.0014 19.9 3.7 27 13-39 4-34 (71)
4 d1bh9b_ a.22.1.3 (B:) TAF(II)2 33.2 35 0.0025 20.1 4.4 19 65-83 37-55 (89)
5 d2ezia_ a.4.1.2 (A:) Transposa 30.8 27 0.0019 19.4 3.4 35 9-43 21-60 (75)
6 d1ni5a4 d.229.1.1 (A:227-314) 30.6 13 0.00093 21.2 1.9 35 8-42 20-56 (88)
7 d1laxa_ c.94.1.1 (A:) D-maltod 29.2 68 0.0049 20.6 5.9 52 11-65 312-363 (369)
8 d2dt5a1 a.4.5.38 (A:4-77) Tran 25.6 7.3 0.00053 22.6 0.1 14 77-92 48-61 (74)
9 d1dp7p_ a.4.5.20 (P:) Class II 24.0 47 0.0034 18.8 3.7 31 12-42 16-50 (76)
10 d2cpqa1 d.51.1.1 (A:212-289) F 20.5 13 0.00097 21.0 0.6 10 77-86 18-27 (78)
No 1
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=48.77 E-value=3.7 Score=22.72 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.6
Q ss_pred HHHhhhccCCCChhhHHH
Q psy9715 20 LHYGKVELIPPKPSEFGA 37 (92)
Q Consensus 20 ~~Y~k~eL~PPs~ae~~~ 37 (92)
-.|.+.++.||+..|+..
T Consensus 14 ~~~~~~g~~PP~vrdl~~ 31 (64)
T d1lvaa3 14 DKYRVSRWQPPSFKEVAG 31 (64)
T ss_dssp HHHHHHTTSCCBHHHHHH
T ss_pred HHHHHcCCCCCcHHHHHH
Confidence 357788999999998754
No 2
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=43.40 E-value=9 Score=21.58 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=16.3
Q ss_pred HHHHHHHhhhccCCCChhhH
Q psy9715 16 LANFLHYGKVELIPPKPSEF 35 (92)
Q Consensus 16 ~~~f~~Y~k~eL~PPs~ae~ 35 (92)
+...-.|+|+.--||+.+|+
T Consensus 46 mnnltdyakvnkfpptvsdl 65 (67)
T d1no1a_ 46 MNNLTDYAKVNKFPPTVSDL 65 (67)
T ss_dssp HHHHHHHHHHCSSCCCGGGG
T ss_pred HHHhHHHHHHccCCCcHHHH
Confidence 34457899999999999875
No 3
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=39.45 E-value=19 Score=19.85 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=16.7
Q ss_pred cchHHHHH----HHhhhccCCCChhhHHHHH
Q psy9715 13 KPILANFL----HYGKVELIPPKPSEFGAIK 39 (92)
Q Consensus 13 ~P~~~~f~----~Y~k~eL~PPs~ae~~~i~ 39 (92)
+|+-..++ .|.++.=.|||..|+....
T Consensus 4 T~rQ~~vL~~I~~~~~~~G~~Ps~rei~~~~ 34 (71)
T d1jhfa1 4 TARQQEVFDLIRDHISQTGMPPTRAEIAQRL 34 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHHHHc
Confidence 35555554 4445555699999986543
No 4
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.21 E-value=35 Score=20.14 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q psy9715 65 NSLIAAEITFWFYVGEVIG 83 (92)
Q Consensus 65 ~~l~~~Ev~gwF~VGEiIG 83 (92)
+.++++--++=.||||||=
T Consensus 37 ~v~i~v~giaKvFvGEiVE 55 (89)
T d1bh9b_ 37 NVVIAMSGISKVFVGEVVE 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5567777788889999983
No 5
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=30.78 E-value=27 Score=19.41 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=23.0
Q ss_pred HHhccchHHHHH-----HHhhhccCCCChhhHHHHHHHHH
Q psy9715 9 VAASKPILANFL-----HYGKVELIPPKPSEFGAIKDGIA 43 (92)
Q Consensus 9 ~~~~~P~~~~f~-----~Y~k~eL~PPs~ae~~~i~~~~~ 43 (92)
.+..+|.++... ...+.+|.|||-.+|....+.+.
T Consensus 21 L~~~~ps~~~~y~~i~~~c~~~gl~~PS~~T~~rri~~l~ 60 (75)
T d2ezia_ 21 LRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLD 60 (75)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHC
T ss_pred hCccCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhCC
Confidence 455667777652 23367899999887776665553
No 6
>d1ni5a4 d.229.1.1 (A:227-314) tRNA-Ile-lysidine synthetase, TilS, substrate-binding domain {Escherichia coli [TaxId: 562]}
Probab=30.61 E-value=13 Score=21.15 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=24.0
Q ss_pred HHHhccchHHHHHHHh--hhccCCCChhhHHHHHHHH
Q psy9715 8 VVAASKPILANFLHYG--KVELIPPKPSEFGAIKDGI 42 (92)
Q Consensus 8 ~~~~~~P~~~~f~~Y~--k~eL~PPs~ae~~~i~~~~ 42 (92)
+.+-+.||-...+.|. +.++.+||.+++.++.+.+
T Consensus 20 l~~Ls~~R~~nlLR~WL~~~~~~~Ps~~~L~ei~~ql 56 (88)
T d1ni5a4 20 MLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEV 56 (88)
T ss_dssp GTTSCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3455667777766665 6677888888887766544
No 7
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]}
Probab=29.18 E-value=68 Score=20.62 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=35.1
Q ss_pred hccchHHHHHHHhhhccCCCChhhHHHHHHHHHHHHHHhhhCCCccccHHHHHHH
Q psy9715 11 ASKPILANFLHYGKVELIPPKPSEFGAIKDGIAHVVHQAKSGGWKNLTVKEAWLN 65 (92)
Q Consensus 11 ~~~P~~~~f~~Y~k~eL~PPs~ae~~~i~~~~~~~~~~~~~~~~k~lt~~ea~~~ 65 (92)
..-|.++.|..-++....-|+..++..+...+...++.+-+| +.|++||+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G---~~s~~eal~~ 363 (369)
T d1laxa_ 312 AKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASG---RQTVDEALKD 363 (369)
T ss_dssp TTSHHHHHHHHHHHHSEECCCSTTHHHHHHHHHHHHHHHHHT---SSCHHHHHHH
T ss_pred hhChHHHHHHHHHhhCccCCCCccHHHHHHHHHHHHHHHHcC---CCCHHHHHHH
Confidence 345888888777766555566667777766666666655554 4688888765
No 8
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=25.58 E-value=7.3 Score=22.59 Aligned_cols=14 Identities=50% Similarity=1.099 Sum_probs=9.4
Q ss_pred hhhhhcccCccccccC
Q psy9715 77 YVGEVIGKRSLIGYEV 92 (92)
Q Consensus 77 ~VGEiIGRr~lvGY~V 92 (92)
+.|+. |||. +||+|
T Consensus 48 ~fG~~-G~~g-~GY~V 61 (74)
T d2dt5a1 48 YFGSY-GTRG-VGYTV 61 (74)
T ss_dssp HTTCC-CCTT-TCEEH
T ss_pred HhcCC-CCCC-CCccH
Confidence 34655 8887 58875
No 9
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.05 E-value=47 Score=18.78 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.3
Q ss_pred ccchHHHHHHHh----hhccCCCChhhHHHHHHHH
Q psy9715 12 SKPILANFLHYG----KVELIPPKPSEFGAIKDGI 42 (92)
Q Consensus 12 ~~P~~~~f~~Y~----k~eL~PPs~ae~~~i~~~~ 42 (92)
+-||-..+-+|+ +.++.|-++++|+.+.+..
T Consensus 16 svpR~~lY~~Y~~~C~~~~~~~l~~a~FgKliR~v 50 (76)
T d1dp7p_ 16 SLPRSTLYNHYLLHSQEQKLEPVNAASFGKLIRSV 50 (76)
T ss_dssp EEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCcccCHHHHHHHHHHH
Confidence 457878887775 7889999999999777654
No 10
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.47 E-value=13 Score=20.99 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=7.9
Q ss_pred hhhhhcccCc
Q psy9715 77 YVGEVIGKRS 86 (92)
Q Consensus 77 ~VGEiIGRr~ 86 (92)
.+|.+|||+.
T Consensus 18 ~ig~vIG~gG 27 (78)
T d2cpqa1 18 LMGLAIGTHG 27 (78)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHcCCCh
Confidence 4788999873
Done!