RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9715
(92 letters)
>gnl|CDD|218226 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit. The
Fo sector of the ATP synthase is a membrane bound
complex which mediates proton transport. It is composed
of nine different polypeptide subunits (a, b, c, d, e,
f, g F6, A6L). The function of subunit g is currently
unknown. The conserved region covers all but the very
N-terminus of the member sequences. No prokaryotic
members have been identified thus far.
Length = 103
Score = 96.6 bits (241), Expect = 6e-28
Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 2 SKLVSGVVAASKPILANFLHYGKVELIPPKPSEFGAIKDGIAHVVHQAKSGG-------- 53
+ LV+ V SK L F KVEL PP P++F + + ++ AKSG
Sbjct: 5 TTLVNKAVYYSKVGLEIFKQVAKVELAPPTPADFQEVYQQLFKLIKFAKSGAKPKNLLEN 64
Query: 54 WKNLTVKEAWLNSLIAAEITFWFYVGEVIGKRSLIGYEV 92
KNLTVKEA LN L+ AE+ WFYVGE+IG+R L+GY+V
Sbjct: 65 LKNLTVKEAVLNGLVGAEVLGWFYVGEIIGRRHLVGYKV 103
>gnl|CDD|239158 cd02757, MopB_Arsenate-R, This CD includes the respiratory arsenate
reductase, As(V), catalytic subunit (ArrA) and other
related proteins. These members belong to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 523
Score = 27.0 bits (60), Expect = 1.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 26 ELIPPKPSEFGAIKDGIAHVV 46
E +P KP E GA+ IAHV+
Sbjct: 212 EWLPIKPGEDGALALAIAHVI 232
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes such
as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 26.6 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 4 LVSGVVAASKPILA--NFLHYGKV 25
LV G VA+S P+LA +F Y V
Sbjct: 137 LVVGAVASSAPLLAKVDFKEYNMV 160
>gnl|CDD|233068 TIGR00642, mmCoA_mut_beta, methylmalonyl-CoA mutase, heterodimeric
type, beta chain. The adenosylcobalamin-binding,
catalytic chain of methylmalonyl-CoA mutase may form
homodimers, as in mitochondrion and E. coli, or
heterodimers with a shorter, homologous chain that does
not bind adenosylcobalamin. This model describes this
non-catalytic beta chain, as found in the enzyme from
Propionibacterium freudenreichii, for which the
3-dimensional structure has been solved [Central
intermediary metabolism, Other].
Length = 619
Score = 26.4 bits (58), Expect = 2.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 35 FGAIKDGIAHVVHQAKSGGWKNLTVKEAWLNSLIAAEITFWFYVG 79
FG +D H S W+N T ++ ++N L + TF VG
Sbjct: 294 FGDDEDKRGARQHAITS--WRNKTREDPYVNILRGSIATFSASVG 336
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family
is long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 26.3 bits (58), Expect = 2.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 37 AIKDGIAHVVHQAKSGGWKNLTVKEAWLNSL 67
++DG + Q K G W+ + N L
Sbjct: 810 TLEDGADQSLMQLKGGAWQAFEQRPVEENGL 840
>gnl|CDD|222629 pfam14257, DUF4349, Domain of unknown function (DUF4349). This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 282 and
353 amino acids in length. There is a single completely
conserved residue D that may be functionally important.
Length = 262
Score = 26.0 bits (58), Expect = 2.7
Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 22 YGKVELIPPKPSEFGAIKDGIAHVVHQAKSGGWKNLTVKEAWLNSLIAAEITFWFYVG 79
Y L P +P D + GW L A L + A + + +
Sbjct: 202 YEPEALTPAEPGFGSGFGDAL--------REGWDALVAFLAGLLVFLGALLPWLPLLL 251
>gnl|CDD|220861 pfam10720, DUF2515, Protein of unknown function (DUF2515). This
family is conserved in Firmicutes. Several members are
annotated as YppC. The function is not known.
Length = 306
Score = 24.5 bits (54), Expect = 9.1
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 42 IAHVVHQAKSGGWKNLT-VKEAWLNSLIAAEITFWFY 77
+A +V +++ GW N+T +K + SL++ E +
Sbjct: 38 LASMV--SRNAGW-NMTDLKGSLYPSLLSEEERKRLF 71
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine
amidotransferase/anthranilate phosphoribosyltransferase;
Provisional.
Length = 534
Score = 24.7 bits (54), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 13 KPILANFLHYGKVELIPPKP 32
K IL NFL+Y + E I K
Sbjct: 179 KRILKNFLNYQR-EEIDIKS 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.417
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,790,601
Number of extensions: 393740
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 13
Length of query: 92
Length of database: 10,937,602
Length adjustment: 59
Effective length of query: 33
Effective length of database: 8,320,716
Effective search space: 274583628
Effective search space used: 274583628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)