RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9715
         (92 letters)



>2khv_A Phage integrase; solution structure, GFT, NESG, structural
          genomics, unknown function, PSI-2, protein structure
          initiative; NMR {Nitrosospira multiformis atcc 25196}
          Length = 106

 Score = 24.9 bits (54), Expect = 3.7
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 42 IAHVVHQAKSGGWKNLTVKEAWLNSLIAAEITFWFYVGE 80
           A +  +A    WKN    + W N++   +      +G 
Sbjct: 6  CAALYIKAHRSSWKNTKHADQWTNTI---KTYCGPVIGP 41


>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
           group antigen, fucose utilization; 1.50A {Streptococcus
           pneumoniae} PDB: 2wmh_A* 2wmg_A*
          Length = 581

 Score = 25.2 bits (54), Expect = 4.5
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 23  GKVELIPPKPSEFGAIKDGIAHVVHQAKSGGWKNLTVKEAWLNSLIAAEITFWFYVGEVI 82
           G+  ++P    +    K        +  +   + L+ K  +LNSL         Y G+  
Sbjct: 369 GRYHILPVIHEKIDKEKISSIFPNAKILTKNSEELSSKVNYLNSLYPKL-----YEGDGY 423

Query: 83  GKR 85
            +R
Sbjct: 424 AQR 426


>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor
           complex, isocitrate lyase superfamily; HET: ICT; 1.60A
           {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A
           1o5q_A
          Length = 295

 Score = 25.0 bits (55), Expect = 4.7
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query: 10  AASKPILANFLHYGKVELIPPK 31
           A   PILAN   +G   L    
Sbjct: 201 AVQVPILANITEFGATPLFTTD 222


>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
           for structural GENO infectious diseases, csgid; 2.00A
           {Bacillus anthracis str} PDB: 3kz2_A
          Length = 305

 Score = 24.2 bits (53), Expect = 8.2
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 10  AASKPILANFLHYGKVELIPPK 31
             + P+LAN   +GK      +
Sbjct: 209 KVNAPLLANMTEFGKTPYYSAE 230


>3eoo_A Methylisocitrate lyase; seattle structural genomics center for
           infectious disease, ssgcid; 2.90A {Burkholderia
           pseudomallei 1655}
          Length = 298

 Score = 23.8 bits (52), Expect = 10.0
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query: 10  AASKPILANFLHYGKVELIPPK 31
           A   PILAN   +G   L    
Sbjct: 205 AVKVPILANLTEFGSTPLFTLD 226


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,494,046
Number of extensions: 79172
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 8
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)