RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9715
         (92 letters)



>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
          {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 90

 Score = 23.6 bits (50), Expect = 3.5
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 38 IKDGIAHVVHQAKSGGWK 55
          I+    +V  QA    WK
Sbjct: 72 IQAVAEYVFKQATDAAWK 89


>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           isozyme IV [TaxId: 9606]}
          Length = 262

 Score = 23.7 bits (50), Expect = 5.1
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 20  LHYGKVELIPPKPSEFGAIKDGIAHVVHQAKSGGWKNLTVKEAWLNSLIAAEITFWFYVG 79
           LH+  +     + S  G       H+VH+ + G   +  VKEA       A + F    G
Sbjct: 94  LHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKG--TSRNVKEAQDPEDEIAVLAFLVEAG 151

Query: 80  E 80
            
Sbjct: 152 T 152


>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
           isozyme IV [TaxId: 10090]}
          Length = 258

 Score = 22.9 bits (48), Expect = 9.7
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 20  LHYGKVELIPPKPSEFGAIKDGIAHVVHQAKSGGWKN 56
           LH+        + S  G       H+VH+  +   ++
Sbjct: 94  LHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTSSKED 130


>d1avqa_ c.52.1.13 (A:) lambda exonuclease {Bacteriophage lambda
           [TaxId: 10710]}
          Length = 228

 Score = 22.8 bits (48), Expect = 9.7
 Identities = 4/22 (18%), Positives = 8/22 (36%)

Query: 61  EAWLNSLIAAEITFWFYVGEVI 82
           E ++ S       F   + E +
Sbjct: 195 EKYMASFDEIVPEFIEKMDEAL 216


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 361,684
Number of extensions: 14433
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 5
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)