BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9717
         (127 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
          Length = 477

 Score = 29.3 bits (64), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 61  SKLEKADILEMTVKHLENMQRQ--QLALSAATDPHVLNKFRAGFSECAGEVGRFPGLH 116
           S+L     L++ ++ L  +  Q  QLAL  A DP +   F A  +E  G+VG   G H
Sbjct: 299 SRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYH 356


>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
           With Adp And Acceptor Analogue Heppso
 pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
           With Adp And Oligosaccharides
          Length = 485

 Score = 29.3 bits (64), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 61  SKLEKADILEMTVKHLENMQRQ--QLALSAATDPHVLNKFRAGFSECAGEVGRFPGLH 116
           S+L     L++ ++ L  +  Q  QLAL  A DP +   F A  +E  G+VG   G H
Sbjct: 299 SRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYH 356


>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsb)
 pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsc)
 pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Glucose(Wtgsd)
 pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
           Adp And Dgm
          Length = 485

 Score = 29.3 bits (64), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 61  SKLEKADILEMTVKHLENMQRQ--QLALSAATDPHVLNKFRAGFSECAGEVGRFPGLH 116
           S+L     L++ ++ L  +  Q  QLAL  A DP +   F A  +E  G+VG   G H
Sbjct: 299 SRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYH 356


>pdb|3CT4|A Chain A, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
 pdb|3CT4|B Chain B, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
 pdb|3CT4|C Chain C, Structure Of Dha-Kinase Subunit Dhak From L. Lactis
          Length = 332

 Score = 25.8 bits (55), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 58  ARHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLH 116
           A H +    +I ++  K ++N++   LALSAAT P V    + GF     E+    G+H
Sbjct: 165 AAHQEASLDEIKDLADKVVKNIKTIGLALSAATVPEV---GKPGFVLDDNEIEYGVGIH 220


>pdb|4H0O|A Chain A, Crystal Structure Of Acetate Kinase From Entamoeba
          Histolytica
 pdb|4H0O|B Chain B, Crystal Structure Of Acetate Kinase From Entamoeba
          Histolytica
          Length = 404

 Score = 25.4 bits (54), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 14 LMFHIGHVIEIQQVFCKMQIICSSKT 39
          L+F++G      +VFC   I+CS K+
Sbjct: 17 LIFNVGSSSLTYKVFCSDNIVCSGKS 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.134    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,072,888
Number of Sequences: 62578
Number of extensions: 81043
Number of successful extensions: 195
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)