Query psy9717
Match_columns 127
No_of_seqs 114 out of 414
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 17:48:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4304|consensus 99.9 9.5E-25 2.1E-29 177.7 6.7 86 32-117 33-131 (250)
2 PF07527 Hairy_orange: Hairy O 98.3 4.2E-07 9.1E-12 55.9 2.2 28 96-123 1-32 (43)
3 smart00511 ORANGE Orange domai 98.1 2.3E-06 5E-11 52.8 2.3 25 96-120 1-29 (45)
4 PF00010 HLH: Helix-loop-helix 97.7 2.4E-05 5.2E-10 49.2 2.5 34 44-80 22-55 (55)
5 cd00083 HLH Helix-loop-helix d 97.7 4.6E-05 1E-09 47.8 3.6 34 44-82 25-58 (60)
6 smart00353 HLH helix loop heli 97.5 9.3E-05 2E-09 45.7 3.2 34 44-82 17-50 (53)
7 KOG3561|consensus 95.3 0.019 4.2E-07 54.2 4.1 44 35-82 24-75 (803)
8 KOG1319|consensus 94.1 0.099 2.1E-06 42.6 4.8 39 44-83 83-121 (229)
9 KOG0561|consensus 79.5 1.5 3.2E-05 38.2 2.4 34 44-83 81-114 (373)
10 PLN03217 transcription factor 66.6 11 0.00024 27.2 4.0 39 43-83 27-65 (93)
11 KOG1318|consensus 64.0 6.6 0.00014 34.9 2.9 37 44-84 254-290 (411)
12 PF02197 RIIa: Regulatory subu 60.4 34 0.00073 20.3 4.9 34 42-83 4-37 (38)
13 KOG4029|consensus 60.0 3.9 8.4E-05 32.5 0.7 36 43-82 129-164 (228)
14 smart00394 RIIa RIIalpha, Regu 50.7 46 0.00099 19.3 4.1 33 42-82 4-36 (38)
15 KOG3960|consensus 47.9 43 0.00093 28.5 5.0 40 42-81 127-170 (284)
16 KOG3558|consensus 41.3 17 0.00037 34.7 1.8 32 44-79 67-98 (768)
17 KOG3560|consensus 40.0 14 0.0003 34.7 1.0 36 43-79 42-77 (712)
18 PF12644 DUF3782: Protein of u 36.3 31 0.00068 21.8 2.0 17 93-109 46-62 (64)
19 PF09772 Tmem26: Transmembrane 35.5 35 0.00077 28.9 2.7 28 42-79 148-175 (283)
20 PF13413 HTH_25: Helix-turn-he 29.6 31 0.00068 22.3 1.2 46 64-118 15-60 (62)
21 PF15027 DUF4525: Domain of un 27.9 98 0.0021 23.9 3.8 24 61-84 40-63 (138)
22 PF08332 CaMKII_AD: Calcium/ca 25.2 80 0.0017 23.5 2.8 21 64-84 1-21 (128)
23 KOG3518|consensus 20.5 1E+02 0.0022 27.8 2.9 34 36-72 416-452 (521)
No 1
>KOG4304|consensus
Probab=99.91 E-value=9.5e-25 Score=177.73 Aligned_cols=86 Identities=44% Similarity=0.595 Sum_probs=73.3
Q ss_pred hhhccchHHHHH--------HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHhhhhcC-CChhHHhHHHHHH
Q psy9717 32 QIICSSKTLKRH--------LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSAA-TDPHVLNKFRAGF 102 (127)
Q Consensus 32 ~~~~s~~~~~r~--------eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~~~a~~-~~~~~~~~y~~Gy 102 (127)
-.++..+|.||| +||+||++++++++.+++||||||||||||+|||++++.+...... .++...+.|+.||
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~~~~~~d~f~~Gf 112 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAPAALPVDSFRAGF 112 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccccccccccchhhhccH
Confidence 344566777764 9999999999999989999999999999999999999877654333 4567789999999
Q ss_pred HHHHHHhccc----CCCch
Q psy9717 103 SECAGEVGRF----PGLHF 117 (127)
Q Consensus 103 ~eCl~EV~rF----lg~d~ 117 (127)
++|+.||++| .|+|.
T Consensus 113 ~ec~~EVsr~ls~~~~~~~ 131 (250)
T KOG4304|consen 113 RECAAEVSRYLSICPGMDA 131 (250)
T ss_pred HHHHHHHHHHHhhCCCCCh
Confidence 9999999999 58884
No 2
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=98.29 E-value=4.2e-07 Score=55.85 Aligned_cols=28 Identities=46% Similarity=0.711 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhccc----CCCchhHHhhh
Q psy9717 96 NKFRAGFSECAGEVGRF----PGLHFFFFFWL 123 (127)
Q Consensus 96 ~~y~~Gy~eCl~EV~rF----lg~d~~~~~~~ 123 (127)
++|++||++|+.||++| .|+|+.+-.-|
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rL 32 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARL 32 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS---THHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 47999999999999999 67877665443
No 3
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=98.08 E-value=2.3e-06 Score=52.76 Aligned_cols=25 Identities=44% Similarity=0.724 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhcccC----CCchhHH
Q psy9717 96 NKFRAGFSECAGEVGRFP----GLHFFFF 120 (127)
Q Consensus 96 ~~y~~Gy~eCl~EV~rFl----g~d~~~~ 120 (127)
++|++||++|+.||++|| ++|+.+-
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~ 29 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQLPGTDPDVR 29 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 479999999999999995 6777543
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=97.72 E-value=2.4e-05 Score=49.23 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQ 80 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq 80 (127)
+|+.+||..... ...|+.|++||+.||.|++.||
T Consensus 22 ~L~~llp~~~~~---~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 22 ELRELLPSCSAG---SSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHCCSSHHCC---TTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhcc---ccccCCHHHHHHHHHHHHHHhC
Confidence 778888774312 2479999999999999999986
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=97.71 E-value=4.6e-05 Score=47.77 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
+|+.+||... ...|+.|++||++||.|++.++..
T Consensus 25 ~L~~llp~~~-----~~~k~~k~~iL~~a~~yI~~L~~~ 58 (60)
T cd00083 25 ELRSLLPTLP-----PSKKLSKAEILRKAVDYIKSLQEL 58 (60)
T ss_pred HHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5666665532 248999999999999999999764
No 6
>smart00353 HLH helix loop helix domain.
Probab=97.54 E-value=9.3e-05 Score=45.71 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
+|+.+||... ...|+.|++||++||.|++.++..
T Consensus 17 ~L~~lip~~~-----~~~k~~k~~iL~~ai~yi~~L~~~ 50 (53)
T smart00353 17 ELRSLLPTLP-----NNKKLSKAEILRLAIEYIKSLQEE 50 (53)
T ss_pred HHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6777777532 247999999999999999999764
No 7
>KOG3561|consensus
Probab=95.32 E-value=0.019 Score=54.17 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=34.3
Q ss_pred ccchHHHHH--------HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 35 CSSKTLKRH--------LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 35 ~s~~~~~r~--------eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
.++.|++|| ||..||+..... ..|++|--||.|||+|||.+...
T Consensus 24 ~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~----~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 24 RSEIEKRRRDQMNKYIEELSEMVPTNASL----SRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhcchhc----ccCchHHHHHHHHHHHHHHHhhh
Confidence 355666664 788888776552 36999999999999999998765
No 8
>KOG1319|consensus
Probab=94.10 E-value=0.099 Score=42.60 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
.|+.|||.....+.. --|+-||=||.-|+.|+..|+...
T Consensus 83 dLq~LvP~cq~~ds~-g~KlskA~ILqksidyi~~L~~~k 121 (229)
T KOG1319|consen 83 DLQTLVPTCQQQDSI-GQKLSKAIILQKTIDYIQFLHKEK 121 (229)
T ss_pred HHHHhccccccccch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999998777643 239999999999999999997654
No 9
>KOG0561|consensus
Probab=79.50 E-value=1.5 Score=38.17 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
-||.|+|. +++ .||-||-||..|-.|+-+|..++
T Consensus 81 sLr~LlPr---~eG---EKLSKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 81 SLRALLPR---KEG---EKLSKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred HHHHhcCc---ccc---hhhHHHHHHHHHHHHHHHHHhcc
Confidence 68888886 677 49999999999999999986543
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=66.65 E-value=11 Score=27.17 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
-.|..|+|+..... +.+|.--|.+|.-|-.|+|.+++..
T Consensus 27 sKLq~llPe~r~~r--~s~k~saskvLqEtC~YIrsLhrEv 65 (93)
T PLN03217 27 IKLQQLLPELRDSR--RSDKVSAARVLQDTCNYIRNLHREV 65 (93)
T ss_pred HHHHHHChHHHhhh--ccccccHHHHHHHHHHHHHHHHHHH
Confidence 34666999974423 3479999999999999999998864
No 11
>KOG1318|consensus
Probab=64.02 E-value=6.6 Score=34.94 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~ 84 (127)
+|..|||.....+ .|++|.=||--+|.|+|.+|+...
T Consensus 254 eLg~liP~~~~~~----~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 254 ELGQLIPKCNSED----MKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHhCCCCCcch----hhcccchhhHHHHHHHHHHHHHHH
Confidence 8999999853333 689999999999999999987644
No 12
>PF02197 RIIa: Regulatory subunit of type II PKA R-subunit; InterPro: IPR003117 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In the absence of cAMP, Protein Kinase A (PKA) exists as an equimolar tetramer of regulatory (R) and catalytic (C) subunits []. In addition to its role as an inhibitor of the C subunit, the R subunit anchors the holoenzyme to specific intracellular locations and prevents the C subunit from entering the nucleus. All R subunits have a conserved domain structure consisting of the N-terminal dimerization domain, inhibitory region, cAMP-binding domain A and cAMP-binding domain B. R subunits interact with C subunits primarily through the inhibitory site. The cAMP-binding domains show extensive sequence similarity and bind cAMP cooperatively. Two types of regulatory (R) subunits exist - types I and I - which differ in molecular weight, sequence, autophosphorylation cabaility, cellular location and tissue distribution. Types I and II were further sub-divided into alpha and beta subtypes, based mainly on sequence similarity. This entry represents types I-alpha, I-beta, II-alpha and II-beta regulatory subunits of PKA proteins. These subunits contain the dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).; GO: 0008603 cAMP-dependent protein kinase regulator activity, 0007165 signal transduction; PDB: 2IZY_E 1R2A_A 1L6E_A 2IZX_B 2KYG_A 2EZW_B 3IM4_B 3IM3_A 4F9K_C 2HWN_B ....
Probab=60.42 E-value=34 Score=20.33 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 42 RHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 42 r~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
+.-|+.+..+....+|+ ||++....|.++|..++
T Consensus 4 ~~lL~~~~~~vl~~qP~--------Di~~F~a~yF~~L~~~R 37 (38)
T PF02197_consen 4 QELLKEFTREVLREQPD--------DILQFAADYFEKLEKQR 37 (38)
T ss_dssp HHHHHHHHHHHHHH--S---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHHHHhh
Confidence 34567777788888884 99999999998887654
No 13
>KOG4029|consensus
Probab=60.03 E-value=3.9 Score=32.51 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
++|+.+||..... ..||=|.|+|-+||.|++.|+.-
T Consensus 129 ~~Lr~~lP~~~~~----~kklSKveTLr~A~~YI~~L~~l 164 (228)
T KOG4029|consen 129 AELRALLPTEPPQ----SKKLSKVETLRLATSYIRYLTKL 164 (228)
T ss_pred HHHHhcCCCCCCc----ccccCcccchHHHHHHHHHHHHH
Confidence 4899999875433 26999999999999999999764
No 14
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=50.75 E-value=46 Score=19.35 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 42 RHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 42 r~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
+..|+.++.+....+|+ ||++-...|.+.++.+
T Consensus 4 ~~~L~~~~~~vl~~qP~--------d~~~f~~~yF~kL~~~ 36 (38)
T smart00394 4 QALLEDLTVEVLRAQPS--------DLVQFAADYFEKLEEQ 36 (38)
T ss_pred HHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHHHHc
Confidence 34677788888778874 8999999999877653
No 15
>KOG3960|consensus
Probab=47.87 E-value=43 Score=28.54 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=27.0
Q ss_pred HHHHHHHH--HHHHhcCCC--ccccchHhHHHHHHHHHHHHHHH
Q psy9717 42 RHLVQLLC--LLFLLLQPA--RHSKLEKADILEMTVKHLENMQR 81 (127)
Q Consensus 42 r~eLK~Ll--~ea~~~~~~--~~sKLEKADILEMTV~hLk~lq~ 81 (127)
|+.||..= .|+++.-.. -|-+|=|-|||--+++|+..||.
T Consensus 127 RRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~ 170 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQA 170 (284)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHH
Confidence 45566533 234443321 25699999999999999998875
No 16
>KOG3558|consensus
Probab=41.33 E-value=17 Score=34.70 Aligned_cols=32 Identities=28% Similarity=0.243 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENM 79 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~l 79 (127)
+|+.+|| +-..- .+-|+||-|+-+|+.|||.-
T Consensus 67 eLa~~lP--lp~ai--sshLDkaSimRLtISyLRlr 98 (768)
T KOG3558|consen 67 ELAKLLP--LPAAI--SSHLDKASIMRLTISYLRLR 98 (768)
T ss_pred HHHHhCC--Ccchh--hhhhhhHHHHHHHHHHHHHH
Confidence 8888887 22222 47999999999999999964
No 17
>KOG3560|consensus
Probab=39.99 E-value=14 Score=34.69 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHH
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENM 79 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~l 79 (127)
+||..|- ..+--+.+-.+||+|--||-++|.|||.-
T Consensus 42 aELD~lA-sLLPfpqdiisKLDkLSVLRLSVSyLr~K 77 (712)
T KOG3560|consen 42 AELDHLA-SLLPFPQDIISKLDKLSVLRLSVSYLRVK 77 (712)
T ss_pred hHHHHHH-HhcCCCHHHHhhhhhhhhhhhhHHHHHHH
Confidence 3555432 22334445579999999999999999964
No 18
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=36.31 E-value=31 Score=21.83 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=13.5
Q ss_pred hHHhHHHHHHHHHHHHh
Q psy9717 93 HVLNKFRAGFSECAGEV 109 (127)
Q Consensus 93 ~~~~~y~~Gy~eCl~EV 109 (127)
.....|+.||+.|+..+
T Consensus 46 ~~e~afr~G~~d~l~~~ 62 (64)
T PF12644_consen 46 ESEEAFRQGFRDGLRLL 62 (64)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34678999999998754
No 19
>PF09772 Tmem26: Transmembrane protein 26; InterPro: IPR019169 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=35.47 E-value=35 Score=28.89 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHH
Q psy9717 42 RHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENM 79 (127)
Q Consensus 42 r~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~l 79 (127)
|.||++|++-....- |||||.+ +=++.-
T Consensus 148 RDqLSQLLLvyvg~a---------ADIlEf~-e~~~e~ 175 (283)
T PF09772_consen 148 RDQLSQLLLVYVGTA---------ADILEFF-ETFKEE 175 (283)
T ss_pred HHHHHHHHHHHHHhH---------HHHHHHH-HhcchH
Confidence 789999999877654 8999999 777764
No 20
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=29.56 E-value=31 Score=22.32 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=23.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhhcCCChhHHhHHHHHHHHHHHHhcccCCCchh
Q psy9717 64 EKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSECAGEVGRFPGLHFF 118 (127)
Q Consensus 64 EKADILEMTV~hLk~lq~~~~~~a~~~~~~~~~~y~~Gy~eCl~EV~rFlg~d~~ 118 (127)
|=|+.+-..+.||+.+-... .+.-+..-|.-||-. --++|+|+|+.
T Consensus 15 ~va~~t~I~~~~l~aiE~~~------~~~lp~~~y~rg~lr---~Ya~~Lgld~~ 60 (62)
T PF13413_consen 15 DVAEETKISVSYLEAIENGD------FDSLPSPVYARGYLR---KYARFLGLDPD 60 (62)
T ss_dssp HHHHHCS--HHHHHHHHCT-------GCCSSSHHHHHHHHH---HHHHHTT--HH
T ss_pred HHHHHhCCCHHHHHHHHCcC------hhhCCcHHHHHHHHH---HHHHHhCcCcc
Confidence 34566667788888775432 222223456666643 44567888864
No 21
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=27.89 E-value=98 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=19.1
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHh
Q psy9717 61 SKLEKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 61 sKLEKADILEMTV~hLk~lq~~~~ 84 (127)
+-.=+.+||++.-+|+|.+.....
T Consensus 40 s~~LR~QILdLSkrYVKaLAeEn~ 63 (138)
T PF15027_consen 40 SAELREQILDLSKRYVKALAEENK 63 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444488999999999999976543
No 22
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=25.20 E-value=80 Score=23.48 Aligned_cols=21 Identities=10% Similarity=0.137 Sum_probs=18.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHh
Q psy9717 64 EKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 64 EKADILEMTV~hLk~lq~~~~ 84 (127)
||+||++++-+++..++....
T Consensus 1 ~e~eI~~l~~~w~~ai~tgD~ 21 (128)
T PF08332_consen 1 REQEIAALFDRWNDAIQTGDP 21 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHT-H
T ss_pred CHHHHHHHHHHHHHHHHcCCH
Confidence 689999999999999987654
No 23
>KOG3518|consensus
Probab=20.51 E-value=1e+02 Score=27.81 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=24.0
Q ss_pred cchHHHH---HHHHHHHHHHHhcCCCccccchHhHHHHHH
Q psy9717 36 SSKTLKR---HLVQLLCLLFLLLQPARHSKLEKADILEMT 72 (127)
Q Consensus 36 s~~~~~r---~eLK~Ll~ea~~~~~~~~sKLEKADILEMT 72 (127)
+|++.|| .+||+||++...-+-+ ---|--||||-
T Consensus 416 ~sme~kr~wm~elkrlildh~a~eip---~kakq~il~id 452 (521)
T KOG3518|consen 416 KSMEDKRLWMLELKRLILDHHAAEIP---AKAKQAILEID 452 (521)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhccCc---hHHHhhHhhhc
Confidence 7888888 6999999997766642 22344577764
Done!