Query psy9717
Match_columns 127
No_of_seqs 114 out of 414
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 17:48:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0a_A BHLH, protein (phosphat 98.8 3.6E-09 1.2E-13 69.3 2.9 39 43-82 22-60 (63)
2 4h10_A ARYL hydrocarbon recept 98.7 1.6E-08 5.4E-13 68.2 4.3 35 43-81 29-63 (73)
3 4h10_B Circadian locomoter out 98.4 2.1E-07 7.1E-12 62.7 3.3 33 44-83 29-61 (71)
4 1an4_A Protein (upstream stimu 98.0 3.9E-07 1.3E-11 59.0 -1.3 37 44-82 26-62 (65)
5 2db7_A Hairy/enhancer-OF-split 97.8 1E-05 3.4E-10 53.4 2.6 31 88-118 8-44 (64)
6 1am9_A Srebp-1A, protein (ster 97.7 3.3E-05 1.1E-09 52.3 4.0 34 44-84 27-60 (82)
7 4ati_A MITF, microphthalmia-as 97.7 1.8E-05 6.1E-10 57.1 2.3 37 44-84 48-84 (118)
8 4f3l_A Mclock, circadian locom 97.4 7.7E-05 2.6E-09 60.4 3.0 32 44-82 33-64 (361)
9 1hlo_A Protein (transcription 97.3 0.00017 5.9E-09 48.2 3.6 34 44-83 33-66 (80)
10 1nkp_B MAX protein, MYC proto- 97.3 0.00015 5.2E-09 48.6 2.8 34 44-83 23-56 (83)
11 4f3l_B BMAL1B; BHLH, PAS, circ 97.2 0.00029 9.9E-09 57.8 4.5 34 44-81 34-67 (387)
12 3u5v_A Protein MAX, transcript 95.9 0.017 5.9E-07 38.7 5.6 38 43-84 25-62 (76)
13 4ath_A MITF, microphthalmia-as 95.1 0.01 3.5E-07 40.9 2.2 38 43-84 12-49 (83)
14 2lfh_A DNA-binding protein inh 93.9 0.031 1.1E-06 37.2 2.3 34 43-81 34-67 (68)
15 2ql2_B Neurod1, neurogenic dif 92.8 0.075 2.6E-06 33.9 2.8 34 44-82 23-56 (60)
16 1nkp_A C-MYC, MYC proto-oncoge 92.4 0.26 8.9E-06 33.4 5.2 36 44-84 27-62 (88)
17 1mdy_A Protein (MYOD BHLH doma 91.7 0.073 2.5E-06 34.9 1.7 32 44-81 33-64 (68)
18 4aya_A DNA-binding protein inh 91.1 0.12 4E-06 36.5 2.4 34 44-82 46-79 (97)
19 1nlw_A MAD protein, MAX dimeri 89.3 0.86 3E-05 30.4 5.5 24 60-83 33-56 (80)
20 2kyg_A CAMP-dependent protein 46.3 26 0.00089 20.9 3.6 34 40-81 14-47 (50)
21 2izx_A CAMP-dependent protein 44.9 38 0.0013 19.1 4.1 34 40-81 6-39 (41)
22 2izy_A CAMP-dependent protein 42.6 50 0.0017 20.1 4.6 36 40-83 9-44 (54)
23 2ld7_B Paired amphipathic heli 30.1 16 0.00054 23.9 0.8 22 103-124 46-67 (75)
No 1
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.76 E-value=3.6e-09 Score=69.34 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
.+|+.|||.....+. ..+|++||+||||||+|+++|+++
T Consensus 22 ~~L~~LlP~~~~~~~-~~~k~sKa~iL~~Ai~YIk~Lq~~ 60 (63)
T 1a0a_A 22 HELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp HHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCcccccc-cCCcccHHHHHHHHHHHHHHHHHH
Confidence 389999999877663 258999999999999999999864
No 2
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.68 E-value=1.6e-08 Score=68.23 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR 81 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~ 81 (127)
.+|+.|||... ++ .+|+|||+||++||.|||.++.
T Consensus 29 ~eL~~LvP~~~--~~--~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 29 DELASLVPTCN--AM--SRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHSHHHH--TC--SSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHccccc--cc--cccccHHHHHHHHHHHHHHHhc
Confidence 39999999865 22 4799999999999999999864
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.37 E-value=2.1e-07 Score=62.67 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
+|+.||| ...+|++||+||++||.||+.++...
T Consensus 29 eL~~LvP-------~~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 29 ELGSMLP-------GNARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp HHHTTSS-------SCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-------CCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 7777777 12479999999999999999998753
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.02 E-value=3.9e-07 Score=58.96 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
+|+.|||...... ...|++||+||++||.|++.|+..
T Consensus 26 ~L~~lvP~~~~~~--~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 26 QLSKIIPDSSMES--TKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp HHHHHSCCCCCCS--STTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHHCcCccccc--ccCCCCHHHHHHHHHHHHHHHHHH
Confidence 7888888643222 236999999999999999999864
No 5
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=97.80 E-value=1e-05 Score=53.41 Aligned_cols=31 Identities=39% Similarity=0.707 Sum_probs=24.8
Q ss_pred cCCChhH-HhHHHH-HHHHHHHHhccc----CCCchh
Q psy9717 88 AATDPHV-LNKFRA-GFSECAGEVGRF----PGLHFF 118 (127)
Q Consensus 88 ~~~~~~~-~~~y~~-Gy~eCl~EV~rF----lg~d~~ 118 (127)
+..++.. .++|++ ||++|+.||+|| +|+|+.
T Consensus 8 ~~~d~~~~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~ 44 (64)
T 2db7_A 8 GYFDAHALAMDYRSLGFRECLAEVARYLSIIEGLDAS 44 (64)
T ss_dssp TCCCHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred cccCchHHHHHHHHHhHHHHHHHHHHHHhcCCCCCcc
Confidence 4556654 578995 999999999999 688865
No 6
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=97.70 E-value=3.3e-05 Score=52.33 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~ 84 (127)
+|+.|||. ..+|+.||+||++||.|++.|+....
T Consensus 27 ~L~~lvP~-------~~~k~~Ka~IL~~Ai~YI~~Lq~~~~ 60 (82)
T 1am9_A 27 ELKDLVVG-------TEAKLNKSAVLRKAIDYIRFLQHSNQ 60 (82)
T ss_dssp HHHHHHTC-------SSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccC-------CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78888874 23799999999999999999987643
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=97.65 E-value=1.8e-05 Score=57.11 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~ 84 (127)
+|+.|||..... ..|+.||.||++||.|++.|+....
T Consensus 48 ~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~~ 84 (118)
T 4ati_A 48 ELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQQ 84 (118)
T ss_dssp HHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHHH
Confidence 888898874322 2699999999999999999987644
No 8
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.39 E-value=7.7e-05 Score=60.36 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
+|+.||| . ..+||+||.||++||.|||.++..
T Consensus 33 ~l~~~~p-----~--~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 33 ELGSMLP-----G--NARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp HHHHTCC-----S--SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-----C--CCCCcCHHHHHHHHHHHHHHHHhh
Confidence 7888888 2 247999999999999999998754
No 9
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.32 E-value=0.00017 Score=48.20 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
+|+.|||... ..|+.||+||.+||.|++.|+...
T Consensus 33 ~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 66 (80)
T 1hlo_A 33 SLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 66 (80)
T ss_dssp HHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHH
Confidence 7888887532 269999999999999999998754
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=97.26 E-value=0.00015 Score=48.64 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
+|+.+||... ..|+.||+||.+||.|++.|+...
T Consensus 23 ~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 56 (83)
T 1nkp_B 23 SLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 56 (83)
T ss_dssp HHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677776521 379999999999999999998653
No 11
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.21 E-value=0.00029 Score=57.78 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR 81 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~ 81 (127)
+|+.|||..- .. .+||+||.||.+||.|||.++.
T Consensus 34 ~L~~l~p~~~-~~---~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 34 ELASLVPTCN-AM---SRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHCHHHH-HC---SSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCC-cc---ccccCHHHHHHHHHHHHHHhhc
Confidence 8999999762 22 3799999999999999999874
No 12
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=95.93 E-value=0.017 Score=38.67 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~ 84 (127)
.+|+.+||.....+. ++=|++||..||.|++.|+++-.
T Consensus 25 ~~Lr~~vP~~~~~~K----~~sK~~IL~~AieYI~~Lq~~l~ 62 (76)
T 3u5v_A 25 RELGRMCQMHLKSDK----AQTKLLILQQAVQVILGLEQQVR 62 (76)
T ss_dssp HHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccc----cccHHHHHHHHHHHHHHHHHHHH
Confidence 489999997553321 23689999999999999987654
No 13
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=95.09 E-value=0.01 Score=40.95 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~ 84 (127)
.+|..|||.. .++ .+|+.|+-||-.||.|++.|++...
T Consensus 12 ~EL~~LiP~~--~~~--~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 12 KELGTLIPKS--NDP--DMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHSCCC--CCT--TCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhhccCCCC--CCc--ccCcchHHHHHHHHHHHHHHHHHHH
Confidence 5889999974 333 4799999999999999999987543
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=93.89 E-value=0.031 Score=37.22 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717 43 HLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR 81 (127)
Q Consensus 43 ~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~ 81 (127)
..||.+||.. +...||-|.|||.+++.|++.||.
T Consensus 34 ~~LR~~VP~~-----p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 34 SRLRELVPGV-----PRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp HHHHHHCCCC-----CTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCC-----CCCCCccHHHHHHHHHHHHHHHHc
Confidence 3788888873 124699999999999999999874
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=92.83 E-value=0.075 Score=33.94 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
.|+.+||.. +...||=|.|||.+++.|++.|+..
T Consensus 23 ~LR~~lP~~-----~~~~klSKi~tLr~Ai~YI~~L~~~ 56 (60)
T 2ql2_B 23 NLRKVVPCY-----SKTQKLSKIETLRLAKNYIWALSEI 56 (60)
T ss_dssp HHHHTSSSC-----CSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCC-----CCcCcCCHHHHHHHHHHHHHHHHHH
Confidence 666666642 1246999999999999999999763
No 16
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=92.37 E-value=0.26 Score=33.42 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHHh
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQL 84 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~~ 84 (127)
.|+.+||... + ..|+-|+.||..|+.|++.|+....
T Consensus 27 ~Lr~~vP~~~--~---~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 27 ALRDQIPELE--N---NEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHTTCGGGT--T---CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCC--C---CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6667776521 1 3699999999999999999987643
No 17
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=91.71 E-value=0.073 Score=34.91 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR 81 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~ 81 (127)
.|+.+||. .+ ..||=|++||.+++.|++.|+.
T Consensus 33 ~LR~~iP~----~~--~~KlSKi~tLr~Ai~YI~~L~~ 64 (68)
T 1mdy_A 33 TLKRSTSS----NP--NQRLPKVEILRNAIRYIEGLQA 64 (68)
T ss_dssp HHHTTSCS----CT--TSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC----CC--CCCCCHHHHHHHHHHHHHHHHH
Confidence 67777763 12 3699999999999999999975
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=91.14 E-value=0.12 Score=36.50 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHH
Q psy9717 44 LVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82 (127)
Q Consensus 44 eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~ 82 (127)
.||.+||.. +...||=|-|||.+++.|++.|+..
T Consensus 46 ~LR~~vP~~-----p~~kKLSKIETLRlAi~YI~~Lq~~ 79 (97)
T 4aya_A 46 KLKELVPSI-----PQNKKVSKMEILQHVIDYILDLQIA 79 (97)
T ss_dssp HHHHHCTTS-----CSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCC-----CCCCcccHHHHHHHHHHHHHHHHHH
Confidence 788888763 1246999999999999999999864
No 19
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=89.33 E-value=0.86 Score=30.36 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=21.1
Q ss_pred cccchHhHHHHHHHHHHHHHHHHH
Q psy9717 60 HSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 60 ~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
..|+=|++||..|+.|++.++...
T Consensus 33 ~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 33 SSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999998754
No 20
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=46.31 E-value=26 Score=20.93 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717 40 LKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR 81 (127)
Q Consensus 40 ~~r~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~ 81 (127)
..+..|+.++.+.+..+|. ||++-...|.+.+..
T Consensus 14 ~l~~lL~~~~~evlr~qP~--------Di~~Faa~yF~~l~~ 47 (50)
T 2kyg_A 14 GLTELLQGYTVEVLRQQPP--------DLVEFAVEYFTRLRE 47 (50)
T ss_dssp THHHHHHHHHHHHHHHCCS--------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHH
Confidence 4567888899998888884 999999999998765
No 21
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=44.90 E-value=38 Score=19.06 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHH
Q psy9717 40 LKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQR 81 (127)
Q Consensus 40 ~~r~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~ 81 (127)
..+..|+.++.+.+..+|. ||++-+..|.+.+.+
T Consensus 6 ~l~~lL~~~~~~vl~~qP~--------di~~f~a~yF~~l~~ 39 (41)
T 2izx_A 6 GLTELLQGYTVEVLRQQPP--------DLVEFAVEYFTRLRE 39 (41)
T ss_dssp THHHHHHHHHHHHHHHCCS--------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHhh
Confidence 3466788888888888884 999999999998764
No 22
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=42.61 E-value=50 Score=20.14 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccccchHhHHHHHHHHHHHHHHHHH
Q psy9717 40 LKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83 (127)
Q Consensus 40 ~~r~eLK~Ll~ea~~~~~~~~sKLEKADILEMTV~hLk~lq~~~ 83 (127)
..+..|+.++.+.+..+|. ||++-+..|...+...+
T Consensus 9 ~l~~lL~~f~~evlr~qP~--------Di~~Faa~YF~~L~~~~ 44 (54)
T 2izy_A 9 GLTELLQGYTVEVLRQQPP--------DLVDFAVEYFTRLREAR 44 (54)
T ss_dssp THHHHHHHHHHHHHHHCCS--------CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHhH
Confidence 4567788888898888884 99999999999987644
No 23
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=30.13 E-value=16 Score=23.92 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.1
Q ss_pred HHHHHHhcccCCCchhHHhhhc
Q psy9717 103 SECAGEVGRFPGLHFFFFFWLN 124 (127)
Q Consensus 103 ~eCl~EV~rFlg~d~~~~~~~~ 124 (127)
.+.+.+|..|+|.+++++.|.+
T Consensus 46 ~eLv~~V~~~lg~~pdL~~~Fk 67 (75)
T 2ld7_B 46 AELVQLVSPFLGKFPELFNWFK 67 (75)
T ss_dssp HHHHHHTHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHH
Confidence 5677888888999999988875
Done!