RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9717
(127 letters)
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex,
double helix, overhanging base, transcription/DNA
complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 30.8 bits (70), Expect = 0.022
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 40 LKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQQ 83
+ +VQL ++ + S K IL +++ +++
Sbjct: 20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural
genomics, unknown function, DNA binding protein, NPPSFA;
1.90A {Homo sapiens} SCOP: a.273.1.1
Length = 64
Score = 29.6 bits (66), Expect = 0.053
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 91 DPHVLN-KFRA-GFSECAGEVGRF 112
D H L +R+ GF EC EV R+
Sbjct: 11 DAHALAMDYRSLGFRECLAEVARY 34
>1a0a_A BHLH, protein (phosphate system positive regulatory protein
PHO4); transcription factor, basic helix loop helix;
HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP:
a.38.1.1
Length = 63
Score = 26.7 bits (59), Expect = 0.63
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 61 SKLEKADILEMTVKHLENMQRQ 82
+ KA +E +++ ++Q+
Sbjct: 39 AAPSKATTVEAACRYIRHLQQN 60
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 27.3 bits (61), Expect = 0.64
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 57 PARHSKLEKADILEMTVKHLENMQRQQLALSA 88
+KL K+ +L + ++ +Q L
Sbjct: 33 VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.77
Identities = 12/106 (11%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 2 EYLNCASTAPDDLMFHIGHVIEIQQVFCKMQIICSSKTLK---RHLVQLLCLLFLLLQPA 58
+ A ++F IG + + + + L+ + + + L +
Sbjct: 291 SFFVSVRKAIT-VLFFIG--VRCYEAYPNTSL--PPSILEDSLENNEGVPSPM-LSISNL 344
Query: 59 RHSKLEKADILEMTVKHLENMQRQQLALSAATDPHVLNKFRAGFSE 104
+++ + T HL ++ +++L V+ +G +
Sbjct: 345 TQEQVQD--YVNKTNSHLPAGKQVEISLVNGAKNLVV----SGPPQ 384
>1hlo_A Protein (transcription factor MAX); transcriptional regulation,
DNA binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 26.1 bits (58), Expect = 1.5
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 59 RHSKLEKADILEMTVKHLENMQRQQLALSA 88
+ K +A IL+ ++++ M+R+
Sbjct: 42 QGEKASRAQILDKATEYIQYMRRKNHTHQQ 71
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 26.2 bits (58), Expect = 3.5
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 77 ENMQRQQLALSAATDPHVLNKFRA 100
+ + A DPH +FR
Sbjct: 642 TKSRAAEAIRRLAVDPHSPPEFRC 665
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 26.2 bits (58), Expect = 4.0
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 10/53 (18%)
Query: 58 ARHSKLEKADILEMTVKHL----------ENMQRQQLALSAATDPHVLNKFRA 100
++ + + L++ K L + + S TD H FR
Sbjct: 613 KKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRI 665
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 4.2
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 23 EIQQVFCKMQIICSSKTLKRHLVQ----LLCLLFLLLQ--PAR-----HSKLEK-ADILE 70
E++ + K + C + L R ++ L ++ ++ A H +K I+E
Sbjct: 302 EVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 71 MTVKHLENMQRQQL 84
++ LE + +++
Sbjct: 361 SSLNVLEPAEYRKM 374
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 25.8 bits (57), Expect = 5.6
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 77 ENMQRQQLALSAATDPHVLNKFRA 100
+ TDPH ++FR
Sbjct: 616 SVRTPESSHEGLITDPHSPSRFRV 639
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
1.90A {Thermus thermophilus}
Length = 311
Score = 25.6 bits (57), Expect = 5.7
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 84 LALSAATDPHVLNKFRAGFSECAGEVG 110
L L + + + G +E A +G
Sbjct: 90 LFLPEDLEEGFVLELVRGAAEAAKRLG 116
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 25.1 bits (55), Expect = 8.3
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 1 MEYLNCASTAPDDLMFHIGHVIEIQQVF 28
M +N D+ +HI +V E F
Sbjct: 264 MTIMNGG-----DIRYHIYNVDEDNPGF 286
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 25.0 bits (54), Expect = 9.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 55 LQPARHSKLEKADILEMTVKHL 76
A KL+K +L M V+H+
Sbjct: 41 TCNAMSRKLDKLTVLRMAVQHM 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.141 0.445
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,873,413
Number of extensions: 89374
Number of successful extensions: 310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 22
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.8 bits)