RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9717
         (127 letters)



>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 40 LKRHLVQLLCLLFLLLQPARHSKLEKADILEMTVKHLENMQRQ 82
          +   +VQL  ++      +  S   K  IL     +++ +++ 
Sbjct: 20 INNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62


>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
           YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 55

 Score = 35.9 bits (83), Expect = 7e-05
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 91  DPHVL-NKFRA-GFSECAGEVGRF 112
           D H L   +R+ GF EC  EV R+
Sbjct: 4   DAHALAMDYRSLGFRECLAEVARY 27


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 32.6 bits (74), Expect = 0.003
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 55 LQPARHSKLEKADILEMTVKHLENMQRQQLALSA 88
          L     +KL K+ +L   + ++  +Q     L  
Sbjct: 31 LVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 30.2 bits (68), Expect = 0.019
 Identities = 6/35 (17%), Positives = 16/35 (45%)

Query: 54 LLQPARHSKLEKADILEMTVKHLENMQRQQLALSA 88
           +   +  K  +A IL+   ++++ M+R+      
Sbjct: 27 SVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 29.1 bits (65), Expect = 0.029
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 40 LKRHLVQLLCLL-FLLLQPARHSKLEKADILEMTVKHLENMQRQ 82
          L   L +L  L+     Q    +   KA  +E   +++ ++Q+ 
Sbjct: 17 LAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 27.8 bits (62), Expect = 0.099
 Identities = 5/32 (15%), Positives = 15/32 (46%)

Query: 57 PARHSKLEKADILEMTVKHLENMQRQQLALSA 88
              +K+ K+ +L   + +++ +Q+    L  
Sbjct: 16 MGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 26.0 bits (57), Expect = 0.69
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 50 LLFLLLQPARHSKLEKADILEMTVKHLENMQRQQLALSA 88
          L  L+      S+     +L     H++ ++        
Sbjct: 23 LKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61


>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 25.5 bits (56), Expect = 1.0
 Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 5/31 (16%)

Query: 36 SSKTLKRHLVQLLCLLFLLLQPARHSKLEKA 66
          S +  +  ++ LL      L+P R ++L   
Sbjct: 2  SQRPFRDRVLHLLA-----LRPYRKAELLLR 27


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 25.3 bits (55), Expect = 1.2
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 53 LLLQPARHSKLEKADILEMTVKHLENMQRQQLALSA 88
           + +   + K  K  IL+    ++ ++Q ++  L +
Sbjct: 31 QIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66


>d1ucpa_ a.77.1.5 (A:) Apoptosis-associated speck-like protein Asc
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 23.5 bits (51), Expect = 5.9
 Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 18/64 (28%)

Query: 38 KTLKRHLVQLLCLLFLLLQPARHSKLEKAD----------------ILEMTVKHLENMQR 81
          K  K  L+     L           L   D                  E+T   L +M  
Sbjct: 21 KKFKLKLLS--VPLREGYGRIPRGALLSMDALDLTDKLVSFYLETYGAELTANVLRDMGL 78

Query: 82 QQLA 85
          Q++A
Sbjct: 79 QEMA 82


>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 93

 Score = 23.2 bits (50), Expect = 7.7
 Identities = 7/64 (10%), Positives = 14/64 (21%), Gaps = 18/64 (28%)

Query: 38 KTLKRHLVQLLCLLFLLLQPARHSKLEKAD----------------ILEMTVKHLENMQR 81
          K  +  L                ++ EK                    ++ +   E M  
Sbjct: 22 KEFQLLLAN--KAHSRSSSGETPAQPEKTSGMEVASYLVAQYGEQRAWDLALHTWEQMGL 79

Query: 82 QQLA 85
          + L 
Sbjct: 80 RSLC 83


>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 696

 Score = 23.8 bits (50), Expect = 8.5
 Identities = 6/24 (25%), Positives = 8/24 (33%)

Query: 77  ENMQRQQLALSAATDPHVLNKFRA 100
              + +    S  TD H    FR 
Sbjct: 642 GTYRPEYAVNSIKTDVHSPGNFRI 665


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,260
Number of extensions: 17927
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 17
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 48 (22.4 bits)