Query psy9718
Match_columns 70
No_of_seqs 101 out of 407
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:49:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h10_A ARYL hydrocarbon recept 99.7 6.6E-19 2.2E-23 106.5 4.0 48 1-52 16-63 (73)
2 1a0a_A BHLH, protein (phosphat 99.7 7.1E-19 2.4E-23 103.5 2.8 53 1-54 9-61 (63)
3 4h10_B Circadian locomoter out 99.7 8E-18 2.7E-22 101.6 3.4 48 1-55 15-62 (71)
4 1an4_A Protein (upstream stimu 99.6 3.5E-17 1.2E-21 95.5 -0.9 52 1-54 12-63 (65)
5 1am9_A Srebp-1A, protein (ster 99.6 2.3E-15 7.9E-20 91.8 5.0 50 1-57 13-62 (82)
6 4ati_A MITF, microphthalmia-as 99.6 2.5E-15 8.6E-20 97.1 4.3 54 1-58 34-87 (118)
7 1hlo_A Protein (transcription 99.5 1.2E-13 4.2E-18 83.3 5.8 51 1-57 19-69 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 8.2E-14 2.8E-18 84.4 5.0 51 1-57 9-59 (83)
9 4f3l_A Mclock, circadian locom 99.4 4E-13 1.4E-17 96.5 3.9 47 1-54 19-65 (361)
10 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 7.6E-13 2.6E-17 96.3 4.6 49 1-53 20-68 (387)
11 1nkp_A C-MYC, MYC proto-oncoge 99.3 3.9E-12 1.3E-16 78.5 5.2 51 1-56 13-63 (88)
12 3u5v_A Protein MAX, transcript 99.3 8.9E-12 3.1E-16 75.5 6.4 54 1-58 12-65 (76)
13 1nlw_A MAD protein, MAX dimeri 99.1 2.5E-11 8.6E-16 73.9 3.6 52 1-57 8-59 (80)
14 2ql2_B Neurod1, neurogenic dif 99.0 3.5E-10 1.2E-14 65.7 3.8 48 2-54 10-57 (60)
15 1mdy_A Protein (MYOD BHLH doma 99.0 3.6E-10 1.2E-14 67.2 3.4 47 2-54 20-66 (68)
16 4ath_A MITF, microphthalmia-as 98.9 6.3E-10 2.1E-14 68.9 4.0 48 6-57 4-51 (83)
17 2lfh_A DNA-binding protein inh 98.9 2.7E-10 9.2E-15 68.4 2.0 46 2-52 22-67 (68)
18 4aya_A DNA-binding protein inh 98.3 1.7E-06 5.8E-11 54.7 5.3 48 4-56 35-82 (97)
19 3muj_A Transcription factor CO 50.8 14 0.00049 24.2 3.1 39 8-50 95-133 (138)
20 4ehp_B Catenin alpha-1; adhere 44.5 19 0.00064 22.7 2.8 40 5-48 58-101 (111)
21 1p3q_Q VPS9P, vacuolar protein 35.4 32 0.0011 19.0 2.6 21 2-22 5-25 (54)
22 2jqq_A Conserved oligomeric go 32.7 60 0.0021 22.5 4.1 38 6-52 53-90 (204)
23 3zy0_A Tumor protein P63; tran 25.0 34 0.0012 17.2 1.3 8 7-14 20-27 (32)
24 3zy1_A Tumor protein 63; trans 21.3 19 0.00064 19.5 -0.1 15 8-23 21-35 (46)
25 1ufz_A Hypothetical protein BA 20.7 57 0.002 19.5 2.0 18 6-23 31-48 (83)
No 1
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.75 E-value=6.6e-19 Score=106.54 Aligned_cols=48 Identities=33% Similarity=0.622 Sum_probs=43.2
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQR 52 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~ 52 (70)
+||+||++||.+|++|++|||.+.. ..+|+|||+||++||+||+.|+.
T Consensus 16 ~ERrRR~rIN~~l~eL~~LvP~~~~----~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 16 IEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHSHHHHT----CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHcccccc----ccccccHHHHHHHHHHHHHHHhc
Confidence 4999999999999999999999852 24799999999999999999874
No 2
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.74 E-value=7.1e-19 Score=103.49 Aligned_cols=53 Identities=26% Similarity=0.377 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~ 54 (70)
+|++||+|||.+|.+|++|||.+...++ ..+|++||+||++||+||+.||+++
T Consensus 9 aEr~RR~rIn~~~~~L~~LlP~~~~~~~-~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 9 AEQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp GTHHHHHHHHHHHHHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccc-cCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999999876542 2479999999999999999999865
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.69 E-value=8e-18 Score=101.63 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHh
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQL 55 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~ 55 (70)
+||+||++||.+|.+|++|||+. ..|+||++||++||+||+.||.+..
T Consensus 15 iErrRRd~IN~~i~eL~~LvP~~-------~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 15 SEKKRRDQFNVLIKELGSMLPGN-------ARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSC-------CSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHhCCCC-------CCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 59999999999999999999952 3799999999999999999998874
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=3.5e-17 Score=95.48 Aligned_cols=52 Identities=27% Similarity=0.461 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~ 54 (70)
+||+||++||.+|.+|++|||.+....+ ..|++||+||++||+||+.||++.
T Consensus 12 ~Er~RR~~in~~~~~L~~lvP~~~~~~~--~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 12 VERRRRDKINNWIVQLSKIIPDSSMEST--KSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCCSS--TTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccccc--cCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5999999999999999999998743221 258999999999999999999764
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.57 E-value=2.3e-15 Score=91.79 Aligned_cols=50 Identities=32% Similarity=0.509 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL 57 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~ 57 (70)
+||+||++||.+|.+|++|||.+ ..|++||+||..||+||+.|+.+....
T Consensus 13 ~ErrRR~~in~~f~~L~~lvP~~-------~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L 62 (82)
T 1am9_A 13 IEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSNQKL 62 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999973 379999999999999999999988654
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.55 E-value=2.5e-15 Score=97.12 Aligned_cols=54 Identities=33% Similarity=0.488 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhh
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALS 58 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~ 58 (70)
+||+||++||.+|.+|++|||.+... ..|++||+||++||+||+.||.+...+.
T Consensus 34 ~ERrRR~~In~~~~~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 34 IERRRRFNINDRIKELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQQRAK 87 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999987432 2689999999999999999999887654
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=1.2e-13 Score=83.32 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL 57 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~ 57 (70)
+||+||..||.+|+.|+.+||.+. ..|++|++||..||+||+.|+.+....
T Consensus 19 ~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 19 LERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999863 268999999999999999999887654
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.45 E-value=8.2e-14 Score=84.37 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL 57 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~ 57 (70)
+||+||+.||.+|+.|+++||.+. ..|++|++||..||+||+.|+.+....
T Consensus 9 ~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~~~l 59 (83)
T 1nkp_B 9 LERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKNHTH 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999863 268999999999999999999876543
No 9
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.35 E-value=4e-13 Score=96.50 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~ 54 (70)
+||+||++||..|.+|++|||. ..+|+|||+||++||.||+.++...
T Consensus 19 ~e~~rr~~~n~~~~~l~~~~p~-------~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 19 SEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCS-------SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-------CCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 6999999999999999999993 1479999999999999999998654
No 10
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.33 E-value=7.6e-13 Score=96.29 Aligned_cols=49 Identities=33% Similarity=0.608 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHH
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~ 53 (70)
+||+||++||..|.+|+.|||.+.. ..+|+||++||++||.|||.++..
T Consensus 20 ~ek~rR~~~n~~~~~L~~l~p~~~~----~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 20 IEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHH----CSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcchHHHHHHHHHHHHhcCCCCc----cccccCHHHHHHHHHHHHHHhhcc
Confidence 5899999999999999999998632 248999999999999999999843
No 11
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.29 E-value=3.9e-12 Score=78.54 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLA 56 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~ 56 (70)
+||+||+.||.+|..|+.+||.... ..|++|++||..|++||+.|+.+...
T Consensus 13 ~ER~RR~~ln~~f~~Lr~~vP~~~~-----~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 13 LERQRRNELKRSFFALRDQIPELEN-----NEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTT-----CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999998521 36999999999999999999988654
No 12
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.28 E-value=8.9e-12 Score=75.50 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHhh
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALS 58 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~~ 58 (70)
+||+||+.||.+|++|+.+||.+...+ .++.|++||..||+||+.|+++.....
T Consensus 12 ~ER~Rr~~IN~~f~~Lr~~vP~~~~~~----K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 12 LERKRRRDINEAFRELGRMCQMHLKSD----KAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCCCcc----ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999754211 233799999999999999999987643
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.14 E-value=2.5e-11 Score=73.90 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL 57 (70)
Q Consensus 1 iEkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~ 57 (70)
+||+||+.||.||..|+++||... ...|+.|++||..|++||+.|+......
T Consensus 8 ~ER~RR~~lk~~f~~Lr~~vP~~~-----~~~k~sk~~iL~kA~~yI~~L~~~~~~l 59 (80)
T 1nlw_A 8 MEKNRRAHLRLSLEKLKGLVPLGP-----DSSRHTTLSLLTKAKLHIKKLEDSDRKA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCS-----SSCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999742 1478899999999999999999887543
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.99 E-value=3.5e-10 Score=65.69 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54 (70)
Q Consensus 2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~ 54 (70)
|++|+.-||.+|+.|+.+||... ...|+.|.+||..|++||..|+...
T Consensus 10 ER~R~~~iN~af~~LR~~lP~~~-----~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 10 ERNRMHGLNAALDNLRKVVPCYS-----KTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCC-----SSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHccCCC-----CcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999742 2479999999999999999999765
No 15
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.97 E-value=3.6e-10 Score=67.22 Aligned_cols=47 Identities=28% Similarity=0.504 Sum_probs=41.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy9718 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54 (70)
Q Consensus 2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~ 54 (70)
|++|+..||++|+.|+.+||.. + ..|+.|++||..|++||..|+...
T Consensus 20 ER~R~~~iN~af~~LR~~iP~~----~--~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 20 ERRRLSKVNEAFETLKRSTSSN----P--NQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSC----T--TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCC----C--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999963 2 369999999999999999998753
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.94 E-value=6.3e-10 Score=68.92 Aligned_cols=48 Identities=33% Similarity=0.479 Sum_probs=41.4
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhHh
Q psy9718 6 RARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLAL 57 (70)
Q Consensus 6 R~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~~ 57 (70)
|..||..+.+|.+|||++.+ + ..|++|+.||..||+|++.||+....+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~--~--~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSND--P--DMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCC--T--TCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHhhhhhhccCCCCCC--c--ccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998632 2 479999999999999999998866543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.93 E-value=2.7e-10 Score=68.36 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy9718 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQR 52 (70)
Q Consensus 2 EkrRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~ 52 (70)
||+|...||.+|+.|+.+||... ...|+.|.+||..+++||..||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p-----~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVP-----RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCC-----TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC-----CCCCccHHHHHHHHHHHHHHHHc
Confidence 78888999999999999999842 24799999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.25 E-value=1.7e-06 Score=54.71 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q psy9718 4 RRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLA 56 (70)
Q Consensus 4 rRR~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~~~~~ 56 (70)
.|=.-+|++|+.|+.+||... ...||.|.++|.+++.||..|+.-...
T Consensus 35 ~Rm~~lN~AF~~LR~~vP~~p-----~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 35 SLLYNMNDCYSKLKELVPSIP-----QNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHCTTSC-----SSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 344559999999999999742 247999999999999999999987754
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=50.80 E-value=14 Score=24.17 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=31.9
Q ss_pred HHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHH
Q psy9718 8 RINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENM 50 (70)
Q Consensus 8 RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~l 50 (70)
-|+-++..|..++|.+.+ ++ .+|-|--||..+-+....|
T Consensus 95 tId~gfqrl~k~~pr~pg-dp---e~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPG-DP---ERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTT-CC---SSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCC-Ch---hhhhHHHHHHHHHHHHHHH
Confidence 378899999999998754 23 6788999999998887765
No 20
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=44.54 E-value=19 Score=22.75 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=26.9
Q ss_pred HHHHHHHhH----HHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHH
Q psy9718 5 RRARINNCL----NELKTLILDAMKKDPARHSKLEKADILEMTVKHLE 48 (70)
Q Consensus 5 RR~RIN~~l----~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk 48 (70)
||+||=... ..|+.||-+..++. ++.|..+=|+.+|..+-
T Consensus 58 ~RerIv~eCnavRqaLQdLlseym~~~----g~ke~se~L~~aI~km~ 101 (111)
T 4ehp_B 58 RRERIVAECNAVRQALQDLLSEYMGNA----GRKERSDALNSAIDKMT 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGG----CCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccchhHHHHHHHHH
Confidence 788884444 45666676655432 56788888999988764
No 21
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=35.45 E-value=32 Score=19.01 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHh
Q psy9718 2 EKRRRARINNCLNELKTLILD 22 (70)
Q Consensus 2 EkrRR~RIN~~l~~Lk~Llp~ 22 (70)
++-+|.-.++.+++|+.|.|.
T Consensus 5 ~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 5 KKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHccc
Confidence 355677779999999999997
No 22
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=32.69 E-value=60 Score=22.50 Aligned_cols=38 Identities=16% Similarity=0.416 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCcccchhhHHHHHHHHHHHHHHHHH
Q psy9718 6 RARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQR 52 (70)
Q Consensus 6 R~RIN~~l~~Lk~Llp~~~~~~~~~~~KleKA~ILe~TV~ylk~lq~ 52 (70)
|.-++.-..+|+.|.-.... +=-++.+.||+|||.|-.
T Consensus 53 ~~Dl~~F~~QL~qL~~~~i~---------~Tre~v~d~l~YLkkLD~ 90 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDDIS---------NTQEIIKDVLEYLKKLDE 90 (204)
T ss_dssp HHHHHHHHHHHHHHHHHSCS---------TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhh---------hHHHHHHHHHHHHHHHHH
Confidence 33455556666666554211 122667788888887654
No 23
>3zy0_A Tumor protein P63; transcription, transcription factor, tetramerization domain, cycle control; HET: MSE; 1.90A {Homo sapiens}
Probab=25.03 E-value=34 Score=17.17 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=5.6
Q ss_pred HHHHHhHH
Q psy9718 7 ARINNCLN 14 (70)
Q Consensus 7 ~RIN~~l~ 14 (70)
-+||++|+
T Consensus 20 ~ki~e~LE 27 (32)
T 3zy0_A 20 LKIKESLE 27 (32)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 36788876
No 24
>3zy1_A Tumor protein 63; transcription, transcription factor, tetramerization domain, cycle control; 2.15A {Homo sapiens}
Probab=21.33 E-value=19 Score=19.53 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHhHHHHHHHHHhh
Q psy9718 8 RINNCLNELKTLILDA 23 (70)
Q Consensus 8 RIN~~l~~Lk~Llp~~ 23 (70)
+||++|+ |.+++|..
T Consensus 21 ki~e~LE-L~~~~pq~ 35 (46)
T 3zy1_A 21 KIKESLE-LMQYLPQH 35 (46)
T ss_dssp HHHHHHH-GGGGSCHH
T ss_pred HHHHHHH-HHhccchh
Confidence 6888887 66677653
No 25
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=20.66 E-value=57 Score=19.53 Aligned_cols=18 Identities=33% Similarity=0.772 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHhh
Q psy9718 6 RARINNCLNELKTLILDA 23 (70)
Q Consensus 6 R~RIN~~l~~Lk~Llp~~ 23 (70)
++|+..||++++..|-++
T Consensus 31 ~arL~SCLd~iR~VlGds 48 (83)
T 1ufz_A 31 QARLYSCLDHMREVLGDA 48 (83)
T ss_dssp HHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 678999999999998774
Done!