RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9718
(70 letters)
>1a0a_A BHLH, protein (phosphate system positive regulatory protein
PHO4); transcription factor, basic helix loop helix;
HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP:
a.38.1.1
Length = 63
Score = 44.4 bits (105), Expect = 2e-08
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53
E+ RR R+ L+EL +LI K+ + KA +E +++ ++Q+
Sbjct: 10 EQARRNRLAVALHELASLIPAEWKQQNVS-AAPSKATTVEAACRYIRHLQQN 60
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex,
double helix, overhanging base, transcription/DNA
complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 41.2 bits (97), Expect = 5e-07
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54
+E+RRR +INN + +L +I D+ + S K IL +++ +++
Sbjct: 12 VERRRRDKINNWIVQLSKIIPDSSMESTK--SGQSKGGILSKASDYIQELRQSN 63
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH,
PAS, circadian rhythm proteins, transcription-activato;
2.27A {Mus musculus}
Length = 361
Score = 39.9 bits (93), Expect = 1e-05
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHL 47
EK+RR + N + EL +++ P K++K+ +L+ ++ L
Sbjct: 20 EKKRRDQFNVLIKELGSML-------PGNARKMDKSTVLQKSIDFL 58
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 38.1 bits (88), Expect = 4e-05
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHL 47
EKRRR ++N+ ++EL +L+ A KL+K +L M V+H+
Sbjct: 21 EKRRRDKMNSFIDELASLVPT----CNAMSRKLDKLTVLRMAVQHM 62
>1hlo_A Protein (transcription factor MAX); transcriptional regulation,
DNA binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 34.6 bits (80), Expect = 3e-04
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
+E++RR I + + L+ + + K +A IL+ ++++ M+R+
Sbjct: 19 LERKRRDHIKDSFHSLRDSVPS------LQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 33.5 bits (77), Expect = 6e-04
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
EKR R+ IN+ + ELK L+ +KL K+ +L + ++ +Q L
Sbjct: 14 EKRYRSSINDKIIELKDLV-------VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 32.4 bits (74), Expect = 0.002
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
+E++RR I + + L+ + + K +A IL+ ++++ M+R+
Sbjct: 9 LERKRRDHIKDSFHSLRDSVPS------LQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 31.5 bits (72), Expect = 0.004
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
+E++RR + L+ I + + K K IL+ ++ ++Q ++ L +
Sbjct: 13 LERQRRNELKRSFFALRDQIP-----ELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 27.9 bits (62), Expect = 0.091
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
MEK RRA + L +LK L+ S+ +L H++ ++
Sbjct: 8 MEKNRRAHLRLSLEKLKGLVPLG-----PDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.10
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 23/60 (38%)
Query: 10 N-NCLNE----------LKTL--ILDAMKKDPARHSKLEKADILEMTVK-HLENMQRQQL 55
N N N+ L T+ +L+ + KL+K DI+E+ LE + L
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFI--------KLQKIDIIELQKSLSLEEV-EGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.24
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 19 LILDAMKKDPAR-----HSKLEK-ADILEMTVKHLENMQRQQL 55
+I ++++ A H +K I+E ++ LE + +++
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel,
ligand binding protein; HET: SAM; 2.20A {Staphylococcus
aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Length = 340
Score = 25.2 bits (56), Expect = 1.5
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 15 ELKTLILDAMKKDPARHSKLEKADILEMTVKHLENM 50
ELK + R+S A + + NM
Sbjct: 300 ELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINM 335
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 24.8 bits (54), Expect = 2.5
Identities = 2/15 (13%), Positives = 6/15 (40%)
Query: 10 NNCLNELKTLILDAM 24
N + + +I +
Sbjct: 279 KNTVEGITGIISKTI 293
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
structural genomics center for infectious disease; HET:
5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB:
3qh8_A* 3py6_A* 3py5_A*
Length = 293
Score = 23.1 bits (50), Expect = 9.8
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 13 LNELKTLILDAMKKDP-ARHSKLEKA 37
+ + LI+ A++ P H L +A
Sbjct: 221 IKDADVLIIGALQYRPHPSHFSLGEA 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.129 0.348
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 989,740
Number of extensions: 43775
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 20
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)