RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9718
(70 letters)
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 40.9 bits (96), Expect = 3e-07
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53
+E+RRR +INN + +L +I D+ + S K IL +++ +++
Sbjct: 12 VERRRRDKINNWIVQLSKIIPDSSMEST--KSGQSKGGILSKASDYIQELRQS 62
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 40.6 bits (95), Expect = 3e-07
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53
E+ RR R+ L+EL +LI K+ + KA +E +++ ++Q+
Sbjct: 9 AEQARRNRLAVALHELASLIPAEWKQQ-NVSAAPSKATTVEAACRYIRHLQQN 60
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 31.8 bits (72), Expect = 0.001
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
+E++RR I + + L+ + + K +A IL+ ++++ M+R+
Sbjct: 9 LERKRRDHIKDSFHSLRDSV------PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 29.5 bits (66), Expect = 0.009
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 2 EKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQ 53
E+RR +++N LK + +L K +IL ++++E +Q
Sbjct: 20 ERRRLSKVNEAFETLKRST------SSNPNQRLPKVEILRNAIRYIEGLQAL 65
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 28.8 bits (64), Expect = 0.016
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
+EKR R+ IN+ + ELK L +KL K+ +L + ++ +Q L
Sbjct: 13 IEKRYRSSINDKIIELKDL-------VVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 29.1 bits (65), Expect = 0.017
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
+E++RR + L+ I + + K K IL+ ++ ++Q ++ L +
Sbjct: 13 LERQRRNELKRSFFALRDQIPELENNE-----KAPKVVILKKATAYILSVQAEEQKLIS 66
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 27.9 bits (62), Expect = 0.034
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
MEK RRA + L +LK L+ S+ +L H++ ++
Sbjct: 8 MEKNRRAHLRLSLEKLKGLVPLGPD-----SSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 27.0 bits (60), Expect = 0.065
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 6 RARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLALSA 59
R+ IN+ + ELK L+ +K+ K+ +L + +++ +Q+ L
Sbjct: 1 RSSINDKIIELKDLV-------MGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
MoaA {Staphylococcus aureus [TaxId: 1280]}
Length = 327
Score = 23.2 bits (48), Expect = 3.2
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 8 RINNCLNELKTLILDAMKKDPARHSKLEKAD 38
R ELK + R+S A
Sbjct: 291 RSGVTDEELKEQFKALWQIRDDRYSDERTAQ 321
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 23.3 bits (49), Expect = 3.6
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENM 50
E R + E+ +LD +P++ + V+HL N+
Sbjct: 251 KEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL------VEHLGNL 294
>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 299
Score = 23.2 bits (49), Expect = 4.0
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPA-RHSKLEKADILEMTVKHLENM 50
+ R +C + L L+LD +KD R + + L+ +++ ++
Sbjct: 247 EQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNPNSL 297
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 283
Score = 22.9 bits (48), Expect = 5.0
Identities = 7/55 (12%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPA-RHSKLEKADILEMTVKHLENMQRQQ 54
+ R +C + + L++ +++ A R + IL+ ++ ++++
Sbjct: 227 NDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLKTLA 281
>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 22.8 bits (48), Expect = 5.1
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQLA 56
R NC L +L+ DP+ + E+ L + ++ A
Sbjct: 223 ENGERLPMPPNCPPTLYSLMTKCWAYDPS-----RRPRFTEL-KAQLSTILEEEKA 272
>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET
{Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 22.8 bits (48), Expect = 5.4
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPAR 30
++ RR + C + L ++L
Sbjct: 248 LQGRRLLQPEYCPDPLYEVMLKCWHPKAEM 277
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 301
Score = 22.5 bits (47), Expect = 6.5
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPAR 30
+ A NC EL L+ K PA
Sbjct: 256 RDGNILACPENCPLELYNLMRLCWSKLPAD 285
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 22.4 bits (47), Expect = 7.5
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 2 EKRRRARINNCLNELKTLILDAMKKDPAR 30
E R R +C ++ +++ P
Sbjct: 230 EGERLPRPEDCPQDIYNVMVQCWAHKPED 258
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 22.1 bits (46), Expect = 7.8
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPARHSKLEKADILEMTVKHLENMQRQQ 54
+ R + NC +E+ L+ ++ P + + L M ++
Sbjct: 240 PQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQI------LVSLNRMLEER 287
>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 272
Score = 21.9 bits (46), Expect = 9.5
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 1 MEKRRRARINNCLNELKTLILDAMKKDPAR 30
R R +NC EL L+ K+ P
Sbjct: 224 ERGYRMVRPDNCPEELYQLMRLCWKERPED 253
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.129 0.348
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,380
Number of extensions: 7881
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 29
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)