Query psy9719
Match_columns 248
No_of_seqs 146 out of 1397
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 17:50:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304|consensus 100.0 2.1E-37 4.6E-42 276.3 17.7 183 1-232 267-449 (449)
2 PLN03074 auxin influx permease 99.9 2.3E-27 5.1E-32 217.9 15.7 186 1-238 259-457 (473)
3 PTZ00206 amino acid transporte 99.9 6.9E-28 1.5E-32 221.8 12.2 203 24-233 258-465 (467)
4 PF01490 Aa_trans: Transmembra 99.9 2.5E-26 5.4E-31 207.6 2.4 204 23-229 193-408 (409)
5 KOG4303|consensus 99.9 1.1E-26 2.4E-31 198.6 -0.0 205 29-240 309-522 (524)
6 KOG1303|consensus 99.9 6.3E-24 1.4E-28 192.1 13.3 203 25-234 231-436 (437)
7 KOG1305|consensus 99.9 1.9E-21 4.1E-26 175.1 13.8 199 24-235 196-408 (411)
8 COG0814 SdaC Amino acid permea 98.6 4.9E-07 1.1E-11 82.4 12.7 159 65-229 240-412 (415)
9 TIGR00837 araaP aromatic amino 97.9 6.5E-05 1.4E-09 67.6 9.8 94 94-196 266-360 (381)
10 KOG1303|consensus 97.9 0.00013 2.8E-09 66.8 11.5 38 1-41 254-291 (437)
11 PF03222 Trp_Tyr_perm: Tryptop 97.3 0.0079 1.7E-07 54.6 13.6 124 87-221 265-391 (394)
12 KOG1304|consensus 97.2 0.0054 1.2E-07 56.1 11.7 194 24-232 243-446 (449)
13 KOG1305|consensus 97.2 0.003 6.5E-08 57.6 9.6 91 1-126 220-312 (411)
14 PF01490 Aa_trans: Transmembra 97.0 0.00038 8.2E-09 62.9 1.9 52 1-52 218-269 (409)
15 PTZ00206 amino acid transporte 96.7 0.00077 1.7E-08 62.5 2.0 45 1-48 282-328 (467)
16 TIGR03813 put_Glu_GABA_T putat 96.5 0.14 3.1E-06 47.5 15.5 39 158-196 346-386 (474)
17 PRK10655 potE putrescine trans 96.5 0.18 3.9E-06 46.2 16.0 31 165-197 348-378 (438)
18 PRK10644 arginine:agmatin anti 96.2 0.28 6.2E-06 45.1 15.8 21 176-196 359-379 (445)
19 PRK13629 threonine/serine tran 96.2 0.12 2.6E-06 47.5 12.7 124 95-226 314-440 (443)
20 PRK10249 phenylalanine transpo 96.2 0.13 2.8E-06 47.6 13.1 28 165-194 367-394 (458)
21 TIGR03810 arg_ornith_anti argi 96.1 0.32 6.9E-06 45.1 15.4 32 163-196 350-381 (468)
22 TIGR00909 2A0306 amino acid tr 96.0 0.17 3.6E-06 46.2 12.9 33 162-196 345-377 (429)
23 PRK15132 tyrosine transporter 95.8 0.093 2E-06 47.8 10.4 121 93-224 268-391 (403)
24 PRK10435 cadB lysine/cadaverin 95.7 1 2.2E-05 41.3 16.9 29 165-195 351-379 (435)
25 TIGR00814 stp serine transport 95.5 0.061 1.3E-06 48.9 8.0 119 93-218 277-396 (397)
26 PRK11049 D-alanine/D-serine/gl 95.5 0.42 9E-06 44.3 13.6 40 157-196 359-400 (469)
27 KOG1287|consensus 95.3 0.22 4.8E-06 46.1 10.7 48 151-198 342-389 (479)
28 PRK15049 L-asparagine permease 95.2 0.6 1.3E-05 43.7 13.7 29 165-195 378-406 (499)
29 PRK10238 aromatic amino acid t 95.2 0.74 1.6E-05 42.5 14.1 30 165-196 358-387 (456)
30 PRK10746 putative transport pr 95.1 0.72 1.6E-05 42.7 13.8 43 155-197 346-390 (461)
31 PLN03074 auxin influx permease 95.0 0.26 5.6E-06 45.9 10.6 152 25-188 236-392 (473)
32 TIGR00908 2A0305 ethanolamine 95.0 0.92 2E-05 41.6 14.1 32 163-196 343-374 (442)
33 PF13520 AA_permease_2: Amino 94.7 0.62 1.3E-05 42.3 12.2 98 94-197 270-377 (426)
34 PRK11387 S-methylmethionine tr 94.6 1.2 2.7E-05 41.2 14.2 20 177-196 374-393 (471)
35 PRK11021 putative transporter; 94.6 3.4 7.4E-05 37.5 17.5 33 162-196 331-363 (410)
36 TIGR00905 2A0302 transporter, 94.6 2.8 6E-05 38.9 16.4 31 164-196 355-385 (473)
37 PRK11357 frlA putative fructos 94.6 0.71 1.5E-05 42.4 12.3 31 161-191 346-376 (445)
38 PRK10483 tryptophan permease; 94.4 0.71 1.5E-05 42.2 11.5 94 93-195 279-373 (414)
39 PRK10197 gamma-aminobutyrate t 94.4 1.3 2.9E-05 40.7 13.7 29 165-195 340-368 (446)
40 TIGR00910 2A0307_GadC glutamat 94.3 1.1 2.3E-05 42.2 13.0 24 1-27 220-244 (507)
41 COG0531 PotE Amino acid transp 93.7 2.6 5.7E-05 38.5 14.2 34 1-37 227-261 (466)
42 TIGR00911 2A0308 L-type amino 93.4 0.95 2.1E-05 42.3 10.9 33 161-195 383-415 (501)
43 PRK09664 tryptophan permease T 93.3 1.4 3.1E-05 40.3 11.5 120 93-223 280-402 (415)
44 TIGR00907 2A0304 amino acid pe 93.0 6.3 0.00014 36.5 15.7 30 164-195 380-409 (482)
45 PRK10580 proY putative proline 92.8 4.2 9.1E-05 37.5 14.1 18 178-195 368-385 (457)
46 TIGR00906 2A0303 cationic amin 92.6 2.5 5.4E-05 40.3 12.5 29 164-194 382-410 (557)
47 TIGR01773 GABAperm gamma-amino 91.3 5.2 0.00011 36.8 12.9 18 178-195 371-388 (452)
48 TIGR00913 2A0310 amino acid pe 90.6 12 0.00026 34.7 14.6 29 165-195 364-392 (478)
49 PRK10836 lysine transporter; P 89.8 12 0.00027 34.8 14.1 20 176-195 380-399 (489)
50 PRK15238 inner membrane transp 88.8 19 0.00041 33.6 14.5 29 165-195 394-422 (496)
51 TIGR00912 2A0309 spore germina 84.6 4.3 9.3E-05 36.0 7.5 37 1-40 205-241 (359)
52 TIGR00930 2a30 K-Cl cotranspor 84.3 37 0.00081 34.7 14.6 27 163-191 456-482 (953)
53 KOG4303|consensus 83.7 0.58 1.3E-05 41.6 1.4 46 1-49 328-373 (524)
54 KOG4812|consensus 70.7 7.9 0.00017 32.5 4.4 85 149-237 160-255 (262)
55 COG1914 MntH Mn2+ and Fe2+ tra 65.3 91 0.002 28.7 10.6 75 141-215 324-398 (416)
56 PF07954 DUF1689: Protein of u 63.5 33 0.00071 26.9 6.4 69 170-242 33-101 (152)
57 TIGR03428 ureacarb_perm permea 59.7 1.5E+02 0.0032 27.5 16.6 25 166-192 375-399 (475)
58 COG0814 SdaC Amino acid permea 55.5 1.2E+02 0.0026 27.8 9.7 162 26-196 197-377 (415)
59 TIGR00813 sss transporter, SSS 52.2 1.8E+02 0.0039 26.2 11.0 33 2-37 230-265 (407)
60 PF05805 L6_membrane: L6 membr 51.3 89 0.0019 25.6 7.2 71 165-235 43-118 (195)
61 PF00474 SSF: Sodium:solute sy 46.1 44 0.00096 30.1 5.4 28 149-176 348-377 (406)
62 PF05975 EcsB: Bacterial ABC t 42.8 2.5E+02 0.0055 25.3 11.3 29 155-183 113-141 (386)
63 PRK10484 putative transporter; 40.8 3.2E+02 0.0068 25.8 13.5 12 69-80 296-307 (523)
64 COG1457 CodB Purine-cytosine p 37.1 3.5E+02 0.0076 25.2 11.5 112 66-192 242-358 (442)
65 PRK12488 acetate permease; Pro 35.7 3.9E+02 0.0085 25.4 14.6 48 147-196 408-455 (549)
66 PF01102 Glycophorin_A: Glycop 34.6 78 0.0017 23.8 4.2 32 211-242 66-101 (122)
67 PRK09442 panF sodium/panthothe 33.9 3.9E+02 0.0084 24.8 14.8 16 150-165 376-391 (483)
68 PF01102 Glycophorin_A: Glycop 33.6 71 0.0015 24.0 3.8 19 166-184 64-82 (122)
69 PF10327 7TM_GPCR_Sri: Serpent 32.0 3.4E+02 0.0074 23.5 12.1 18 177-195 248-265 (303)
70 PF07086 DUF1352: Protein of u 31.1 2.9E+02 0.0063 22.4 12.4 57 183-244 82-138 (186)
71 COG4956 Integral membrane prot 29.3 3.6E+02 0.0077 24.0 7.8 56 168-230 42-97 (356)
72 PRK11026 ftsX cell division AB 29.3 3.9E+02 0.0085 23.4 8.4 26 211-236 281-306 (309)
73 TIGR00800 ncs1 NCS1 nucleoside 29.2 4.5E+02 0.0097 24.1 10.3 23 162-184 356-378 (442)
74 TIGR00945 tatC Twin arginine t 25.8 3.8E+02 0.0081 22.0 11.4 36 91-126 52-87 (215)
75 COG5102 SFT2 Membrane protein 25.4 2E+02 0.0042 23.1 5.1 17 171-187 75-92 (201)
76 PF00902 TatC: Sec-independent 24.4 4E+02 0.0086 21.8 10.9 35 92-126 57-91 (215)
77 COG0398 Uncharacterized conser 24.3 2.9E+02 0.0064 22.9 6.4 30 157-186 75-104 (223)
78 COG0534 NorM Na+-driven multid 23.7 5.8E+02 0.013 23.5 12.2 30 165-195 191-220 (455)
79 PF03188 Cytochrom_B561: Eukar 23.6 3.1E+02 0.0067 20.3 7.2 29 204-232 32-60 (137)
80 TIGR02230 ATPase_gene1 F0F1-AT 22.8 3E+02 0.0066 19.9 6.1 21 209-229 76-96 (100)
81 KOG1286|consensus 21.8 7.2E+02 0.016 23.9 9.2 28 165-194 395-422 (554)
82 COG0805 TatC Sec-independent p 21.5 4.4E+02 0.0096 22.5 7.0 32 92-123 67-98 (255)
83 PRK00701 manganese transport p 21.3 6.5E+02 0.014 23.2 11.0 41 142-186 347-389 (439)
84 cd08766 Cyt_b561_ACYB-1_like P 20.9 4E+02 0.0086 20.5 6.1 28 204-231 38-65 (144)
No 1
>KOG1304|consensus
Probab=100.00 E-value=2.1e-37 Score=276.30 Aligned_cols=183 Identities=42% Similarity=0.805 Sum_probs=171.1
Q ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccccccccccccccchhhhhhhhhhhhccccccC
Q psy9719 1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGN 80 (248)
Q Consensus 1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~gYl~fG~ 80 (248)
|||||+|++|+|+|+.+|.+++++|+.+|++||+.||+++
T Consensus 267 Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v---------------------------------------- 306 (449)
T KOG1304|consen 267 MKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDV---------------------------------------- 306 (449)
T ss_pred ccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccc----------------------------------------
Confidence 9999999999999999999999999999998888888877
Q ss_pred cccchhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHH
Q psy9719 81 DAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAM 160 (248)
Q Consensus 81 ~~~~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~ 160 (248)
++.|+.|+|+ +++.+.+|+++++++.+|||||+||+.+++|+. +++|. +++++++..+.+|..++++++++|.
T Consensus 307 --~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-i~~k~---~~~~~~~~~~~~R~~lVllt~~iA~ 379 (449)
T KOG1304|consen 307 --KGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-IRKKF---SENRKKLLEYALRVFLVLLTFLIAV 379 (449)
T ss_pred --cceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-HHHhc---CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 999999999999999999999999999999999 77766 3455678899999999999999999
Q ss_pred hccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 161 VIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDI 232 (248)
Q Consensus 161 ~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l 232 (248)
.+|+++.++||+||++++.+.+++|+++++..++.+.+ +..+|+.+.|.+++++|+++++.|||.++.++
T Consensus 380 ~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~--~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 380 AVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK--GRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc--CceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999999999999999999998865 45679999999999999999999999999864
No 2
>PLN03074 auxin influx permease; Provisional
Probab=99.95 E-value=2.3e-27 Score=217.95 Aligned_cols=186 Identities=17% Similarity=0.247 Sum_probs=146.6
Q ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccccccccccccccchhhhhhhhhhhhccccccC
Q psy9719 1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGN 80 (248)
Q Consensus 1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~gYl~fG~ 80 (248)
||||++|++ ++..++.+++.+|..+|+.||+.||+++
T Consensus 259 M~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~---------------------------------------- 295 (473)
T PLN03074 259 MWKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDEL---------------------------------------- 295 (473)
T ss_pred ccChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhh----------------------------------------
Confidence 677777777 6666777777777766666666666654
Q ss_pred ccc--chhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHH
Q psy9719 81 DAQ--SSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAF 158 (248)
Q Consensus 81 ~~~--~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~l 158 (248)
+ ++.+.|+|+ +.+.+++++++.++++.+||+++.|..+..|+. ...+ .++..+.|.++|+.+++.++++
T Consensus 296 --~~~s~~l~~lp~-~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~-~~~~-----~~k~~~~r~~~R~~lv~~~~~i 366 (473)
T PLN03074 296 --LTHSNAFSLLPR-SGWRDAAVILMLIHQFITFGFACTPLYFVWEKA-IGVH-----DTKSICLRALARLPVVVPIWFL 366 (473)
T ss_pred --hhchhHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-hccc-----ccccHHHHHHHHHHHHHHHHHH
Confidence 4 455677884 446799999999999999999999988887776 4322 2334567899999999999999
Q ss_pred HHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccC----------CCcchHHHHHhHHHHHH-HHHHHHHHHHH
Q psy9719 159 AMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIG----------FGFLNWVLFKDIFLIAF-GLFVMVSGTVI 227 (248)
Q Consensus 159 A~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~----------~~~~~~~~~~~~~~i~~-Gi~~~v~gt~~ 227 (248)
|+.+|+|+++++|+||+++++++|++|+++|++.++++..+ .++.+|..+.|++++++ |+++.+.|+|.
T Consensus 367 A~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~a 446 (473)
T PLN03074 367 AIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWA 446 (473)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHH
Confidence 99999999999999999999999999999999977654110 01223357899999985 66667999999
Q ss_pred HHHHHHHHhcc
Q psy9719 228 SLMDIFTAIQE 238 (248)
Q Consensus 228 si~~l~~~~~~ 238 (248)
|++++++++++
T Consensus 447 si~~ii~~~~~ 457 (473)
T PLN03074 447 SMTNFVRQIDT 457 (473)
T ss_pred HHHHHHHhhhh
Confidence 99999999987
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=99.95 E-value=6.9e-28 Score=221.77 Aligned_cols=203 Identities=14% Similarity=0.181 Sum_probs=161.3
Q ss_pred HHHHHHhhhhhhhccccccchhhcccccccccc--ccccchhh--hhhhhhhhhccccccCcccchhhhcc-CCCchHHH
Q psy9719 24 LFAITGLCGYMKYGNDAQSSITLNIASDQKRKT--YCTWPTFV--HFEYSTGLCGYMKYGNDAQSSITLNI-ASDQKLAQ 98 (248)
Q Consensus 24 ~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~y~~~g~~gYl~fG~~~~~~il~n~-p~~~~~~~ 98 (248)
....+|++.+++.+|....|++++++++.+++. ...++... ++|..+|++||++||++++++++.|+ |.+|....
T Consensus 258 ~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~ 337 (467)
T PTZ00206 258 AIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIM 337 (467)
T ss_pred HHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhh
Confidence 345678888888899988888888776443332 33333333 37999999999999999999999999 56788899
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHH
Q psy9719 99 VVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLA 178 (248)
Q Consensus 99 ~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~ 178 (248)
++++++.+.++++||++.+|+|+.+++. +..+. ++.+.+++...+..++++++++|+++|+++.+++++||++++
T Consensus 338 v~~~~~~~~v~~sypL~~~p~r~~i~~~-~~~~~----~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~ 412 (467)
T PTZ00206 338 VGFVGVLVKLFVSYALLGMACRNALYDV-IGWDA----RKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGG 412 (467)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHH-hCCCc----ccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence 9999999999999999999999999887 43221 223345666667777788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 179 SLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIF 233 (248)
Q Consensus 179 ~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~ 233 (248)
.++|++|++||++......+ +..+++.+.+++++++|++..+.|||+++.+.+
T Consensus 413 ~l~fi~P~lf~l~~~~~~~~--~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 413 LLGFILPALLFMYSGGFTWQ--KVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHhcCCccHH--hhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999984211111 112345578999999999999999999999876
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.92 E-value=2.5e-26 Score=207.64 Aligned_cols=204 Identities=23% Similarity=0.407 Sum_probs=169.6
Q ss_pred HHHHHHHhhhhhhhccccccchhhcccccccccc---ccccchhh--hhhhhhhhhccccccCcccchhhhccCCCchHH
Q psy9719 23 MLFAITGLCGYMKYGNDAQSSITLNIASDQKRKT---YCTWPTFV--HFEYSTGLCGYMKYGNDAQSSITLNIASDQKLA 97 (248)
Q Consensus 23 ~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~ 97 (248)
-....+|++.|++.+|....|++.+++++.+.+. ...++... .+|..+|.+||++||+++++|++.|+|+++++.
T Consensus 193 ~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~ 272 (409)
T PF01490_consen 193 GFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLI 272 (409)
T ss_pred HHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCccccc
Confidence 3556788889999999999999999998888553 33333333 479999999999999999999999999877899
Q ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHhhh-----hccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHh
Q psy9719 98 QVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQH-----MIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLF 172 (248)
Q Consensus 98 ~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sli 172 (248)
.++++++.++++++||++.+|.++.+++. +.++ .....+..++++|...|+.++..+.++|+.+|+++++++++
T Consensus 273 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~ 351 (409)
T PF01490_consen 273 IIARILLVISLLLSYPLQLFPARNSLENL-LFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLV 351 (409)
T ss_pred ccccccchhhhhhccccccchhHhhhhhh-eeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhccc
Confidence 99999999999999999999999999998 4432 10011233457789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccccCCCcchH--HHHHhHHHHHHHHHHHHHHHHHHH
Q psy9719 173 GAFCLASLGIIFPATIHILVLRHERIGFGFLNW--VLFKDIFLIAFGLFVMVSGTVISL 229 (248)
Q Consensus 173 Ga~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~--~~~~~~~~i~~Gi~~~v~gt~~si 229 (248)
||++++.++|++|+++|++.+++++. +..++ +...+++++++|++.++.|+|.++
T Consensus 352 Ga~~~~~i~fi~P~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 352 GALFGSFISFILPALLYLKLFKRKRN--SFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred chHHHHhHHHHHHHHHHHHhhccccc--ccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 99999999999999999999888753 11122 236688999999999999999876
No 5
>KOG4303|consensus
Probab=99.92 E-value=1.1e-26 Score=198.60 Aligned_cols=205 Identities=24% Similarity=0.365 Sum_probs=174.5
Q ss_pred Hhhhhhhhccccccchhhccccccccccccccchhhh--hhhhhhhhccccccCcccchhhhccCCCchHHHHHHHHHHH
Q psy9719 29 GLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVH--FEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYAL 106 (248)
Q Consensus 29 g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~~~~i~~~l 106 (248)
|...|.|--+-..+++|.||.++.|.+.+..|+.+++ +-..+|..||++|+++|+..|++|+| ++....+++++..+
T Consensus 309 G~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp-~qsfk~~VN~fLV~ 387 (524)
T KOG4303|consen 309 GMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP-NQSFKILVNLFLVV 387 (524)
T ss_pred EEEEEeeeceeeccccccccCChhHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC-ccchhhhhhHHHHH
Confidence 3444444455567899999999999999999998775 56899999999999999999999999 57889999999999
Q ss_pred HHHHHhccccchHHHHHHHHHHhhhhcc------cccc-chhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHH
Q psy9719 107 VVFFTYPLQNFVPLELLWVNYIKQHMIQ------YSER-KKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLAS 179 (248)
Q Consensus 107 ~~~~s~pL~~~p~~~~~~~~~l~~~~~~------~~~~-~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~ 179 (248)
..++||||..+.+.+.+|+. +++..++ ++.+ .-+-+...+|+++++++.++|+++|+|..+++++|++.++.
T Consensus 388 KALLSYPLPfyAAvelLe~n-lF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtm 466 (524)
T KOG4303|consen 388 KALLSYPLPFYAAVELLENN-LFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTM 466 (524)
T ss_pred HHHHcCCchHHHHHHHHHHh-hhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhccccccc
Confidence 99999999999999999998 4432222 1111 11234457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q psy9719 180 LGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDF 240 (248)
Q Consensus 180 l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~~~~~~~~ 240 (248)
++|+.|++||+++.++... ..++..+..++++|...++.|.|.|..++++.++++.
T Consensus 467 LsFiwP~lFHl~ik~~~L~-----~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~ 522 (524)
T KOG4303|consen 467 LSFIWPALFHLYIKEKTLN-----NFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD 522 (524)
T ss_pred HHHHHHHHHHHHHHHHhhh-----hHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence 9999999999999887642 3578899999999999999999999999999998653
No 6
>KOG1303|consensus
Probab=99.91 E-value=6.3e-24 Score=192.10 Aligned_cols=203 Identities=19% Similarity=0.351 Sum_probs=170.8
Q ss_pred HHHHHhhhhhhhccccccchhhccccccccccccccch--hhhhhhhhhhhccccccCcccchhhhccCCCchHHHHHHH
Q psy9719 25 FAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPT--FVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKL 102 (248)
Q Consensus 25 y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~~~~i 102 (248)
+.++|..+|.|-||.+.+|++..|+++.+++.....+. ++.+|+.+++.||++|||+++++++.|++++.|+...+++
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani 310 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANI 310 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHH
Confidence 88999999999999999999999999999776555443 3457999999999999999999999999656899999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHHHHH
Q psy9719 103 LYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGI 182 (248)
Q Consensus 103 ~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~f 182 (248)
++.+|++.++++...|..+.+|+. ...+.++. .++....|.+.|+.+++.++++|+.+|+|+++++++||+...++++
T Consensus 311 ~i~~h~i~s~~i~a~pl~~~~E~~-~~~~~~~~-~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ 388 (437)
T KOG1303|consen 311 LIVLHLIGSYQIYAQPLFDVVEKL-IGVKHPDF-KKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTF 388 (437)
T ss_pred HHHHHHhhhhhhhhcchHHHHHHH-hccCCccc-cccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 55433111 1134568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCcchHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy9719 183 IFPATIHILVLRHERIGFGFLNWVLFKDIFL-IAFGLFVMVSGTVISLMDIFT 234 (248)
Q Consensus 183 i~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~-i~~Gi~~~v~gt~~si~~l~~ 234 (248)
++|+++|+...+.++. ..+| ..++.+ +++|++.++.....++++++.
T Consensus 389 ilP~~~yl~~~k~~~~---s~~~--~~~~~~~~~~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 389 ILPCLMYLLIKKPKRF---SPKW--LLNWVIILVVGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHHHHHhhhhhhh---hHHH--HHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9999999999665432 1233 445555 788888888888888887764
No 7
>KOG1305|consensus
Probab=99.87 E-value=1.9e-21 Score=175.08 Aligned_cols=199 Identities=17% Similarity=0.268 Sum_probs=159.7
Q ss_pred HHHHHHhhhhhhhccccccchhhccccccccccccccchh--------hhhhhhhhhhccccccCcccchhhhccCCCch
Q psy9719 24 LFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTF--------VHFEYSTGLCGYMKYGNDAQSSITLNIASDQK 95 (248)
Q Consensus 24 ~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~ 95 (248)
++..+.++.+++..|.. -.+.++|+|+++..++..+ .++|+.+|.+||++|||++++|++.++|+++.
T Consensus 196 ~~~~~pi~~faf~Ch~n----~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~ 271 (411)
T KOG1305|consen 196 LFYALPIFVFAFTCHSN----VFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILN 271 (411)
T ss_pred hhhhhhhhheeeecccc----ceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccc
Confidence 34445666677766666 3445555666655544322 24799999999999999999999999997543
Q ss_pred H------HHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHH
Q psy9719 96 L------AQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLI 169 (248)
Q Consensus 96 ~------~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~ 169 (248)
. ...+|..++++.+.++|++.+|+|..+++..++ +.+++ ...+..+++.++..++..+.+.|+++|++++++
T Consensus 272 ~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~-~~~~~-~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~ 349 (411)
T KOG1305|consen 272 NLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFP-YQPGL-TSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIF 349 (411)
T ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcc-cCCCC-CCccceehhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3 589999999999999999999999998888343 33111 123456788999999999999999999999999
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 170 SLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTA 235 (248)
Q Consensus 170 sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~~~ 235 (248)
+++||++++.++|++|+++|++..|+ . .+++...+...++|+...+.|+...+.++..+
T Consensus 350 ~~vGAT~~~~i~FI~P~~~yl~~~~~-~------~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 350 GFVGATSSTSISFILPALYYLKASKK-K------SREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHhhhhhhhhhHHHHHHHhhheeecc-c------cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999876 2 34567788899999999999999999998865
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.63 E-value=4.9e-07 Score=82.42 Aligned_cols=159 Identities=15% Similarity=0.137 Sum_probs=101.5
Q ss_pred hhhhhhhhhccccccCcccchhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHH---H------Hhhhh--c
Q psy9719 65 HFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN---Y------IKQHM--I 133 (248)
Q Consensus 65 ~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~---~------l~~~~--~ 133 (248)
++|.++++++|..+|+++.++++.+.++ +.....++.....+...++|.+.++.+...-+. + +.+.. +
T Consensus 240 vlyi~~~~~~~~~~~~~~~~~il~~~~~-~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~ 318 (415)
T COG0814 240 VLYILVGFFVFGCFGSLVFGNILAAKEQ-NISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS 318 (415)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHccCc-hHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc
Confidence 3567777777777777779999999984 444444555555555577777777776543221 0 11100 0
Q ss_pred cccc-cchhhHH--HHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHh
Q psy9719 134 QYSE-RKKLIVE--YVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKD 210 (248)
Q Consensus 134 ~~~~-~~~~~~~--~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~ 210 (248)
+..+ ++..+.+ .......+.....++...|..+.+++.+|+.....+.++.|...+.+....+.. +..+..+
T Consensus 319 ~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~-----~g~~~~~ 393 (415)
T COG0814 319 NSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY-----GGNFLLL 393 (415)
T ss_pred cCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec-----CCCchhH
Confidence 1011 1122222 233445556666788889999999999999999999999998877766554421 1112468
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9719 211 IFLIAFGLFVMVSGTVISL 229 (248)
Q Consensus 211 ~~~i~~Gi~~~v~gt~~si 229 (248)
.+++++|+..+..-.+.+.
T Consensus 394 ~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 394 LLVLLFGILVILSPFLATF 412 (415)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888999888877666543
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.93 E-value=6.5e-05 Score=67.58 Aligned_cols=94 Identities=14% Similarity=0.122 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchh-HHHhHh
Q psy9719 94 QKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLD-LLISLF 172 (248)
Q Consensus 94 ~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~-~v~sli 172 (248)
.+...+..++-.+++..|+.-.....+|.+.+. +++. +++ ..|.....+..+...++|.+.|+.. ..++..
T Consensus 266 ~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~-~~~~----~~~---~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~ 337 (381)
T TIGR00837 266 SAIELALELFSNFALASSFLGVTLGLFDYLADL-FKFD----DSK---KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYA 337 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC----ccc---CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHH
Confidence 456677777778888888877777777776555 4321 112 1244445556677778899999976 889999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 173 GAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 173 Ga~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
| +++..+.+++|++++++.++++
T Consensus 338 G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 338 G-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcC
Confidence 9 8899999999999999977654
No 10
>KOG1303|consensus
Probab=97.92 E-value=0.00013 Score=66.84 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=36.9
Q ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccc
Q psy9719 1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQ 41 (248)
Q Consensus 1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~ 41 (248)
||+|++|++ ++.+|+.+++.+|...+++||+.||+.+.
T Consensus 254 Mk~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~ 291 (437)
T KOG1303|consen 254 MKSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVP 291 (437)
T ss_pred cCCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 899999999 99999999999999999999999999994
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=97.27 E-value=0.0079 Score=54.63 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=79.5
Q ss_pred hhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-h
Q psy9719 87 TLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-L 165 (248)
Q Consensus 87 l~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~ 165 (248)
+.+...+.+...++.+.-.+++..||-=...-.+|.+.+. ++.+ ++...|........+-..++|...|+ |
T Consensus 265 ~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~k~~-------~~~~~r~~~~~ltf~ppl~~a~~~p~~F 336 (394)
T PF03222_consen 265 LANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-FKLK-------NNSSGRLKTWLLTFLPPLIFALLFPNGF 336 (394)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC-------ccccchHHHHHHHHHhHHHHHHHCcHHH
Confidence 3344445677777888888888888766555667776665 4321 11122333344445556778888877 7
Q ss_pred hHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcch--HHHHHhHHHHHHHHHHH
Q psy9719 166 DLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLN--WVLFKDIFLIAFGLFVM 221 (248)
Q Consensus 166 ~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~Gi~~~ 221 (248)
-..+++.| ...+.+..++|+++.++.+++++. ...+ .-+.....++++|++..
T Consensus 337 ~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~--~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 337 LIALGYAG-IGIAILLGILPALMVWKARKRKPK--QPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred HHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCC--CCeEEeCcHHHHHHHHHHHHHHH
Confidence 88999999 899999999999999998766542 1111 12444555555565543
No 12
>KOG1304|consensus
Probab=97.21 E-value=0.0054 Score=56.07 Aligned_cols=194 Identities=11% Similarity=0.054 Sum_probs=107.7
Q ss_pred HHHHHHhhhhhhhccccccchhhcccccccccc---cccc--chhhhhhhhhhhhccccccCcccchhhhccCCCchHHH
Q psy9719 24 LFAITGLCGYMKYGNDAQSSITLNIASDQKRKT---YCTW--PTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQ 98 (248)
Q Consensus 24 ~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~ 98 (248)
+-..+|+..|++.|..+.-|+|++|++|+++.. +.+. ..++++|..+|.+||++|| +++-.+.--|=+-
T Consensus 243 ~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG----~~v~~sITLNLP~-- 316 (449)
T KOG1304|consen 243 LPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG----DDVKGSITLNLPQ-- 316 (449)
T ss_pred hHHHHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhcc----ccccceEEecCCc--
Confidence 345678899999999999999999999999994 4333 4566789999999999997 6665544422222
Q ss_pred HHHHHHHHHHHHHhccccchHHHH--HHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhH
Q psy9719 99 VVKLLYALVVFFTYPLQNFVPLEL--LWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFC 176 (248)
Q Consensus 99 ~~~i~~~l~~~~s~pL~~~p~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~ 176 (248)
..+...+.+..+..+.+-=+.+. .-+. +.+.. ..+.+..++.+.-..+-....++...+--.-.=++..=++.
T Consensus 317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI-i~~~i---~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLV 391 (449)
T KOG1304|consen 317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEI-IEPGI---RKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLV 391 (449)
T ss_pred -cHHHHHHHHHHHHHHHHcCchhhhhhHHH-HHHhH---HHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHH
Confidence 44455566666555543222222 1222 33333 33333334455555666666666665555444444444455
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCcchH---HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 177 LASLGIIFPATIHILVLRHERIGFGFLNW---VLFKDIFLIAFGLFVMVSGTVISLMDI 232 (248)
Q Consensus 177 ~~~l~fi~P~~~yl~~~~~~~~~~~~~~~---~~~~~~~~i~~Gi~~~v~gt~~si~~l 232 (248)
|+..+-.+--++ =-..+-.- ....+ .++.-+.-+++-+++.+...+.+-..+
T Consensus 392 Gs~~~s~L~li~-P~liel~~---~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si 446 (449)
T KOG1304|consen 392 GSVSCSLLALIF-PPLIELIT---FYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSI 446 (449)
T ss_pred HHHHHHHHHHHc-cHHHHHHH---hcccccCceehHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555443332222 12222111 11122 235555555555555555555554443
No 13
>KOG1305|consensus
Probab=97.15 E-value=0.003 Score=57.56 Aligned_cols=91 Identities=20% Similarity=0.373 Sum_probs=69.9
Q ss_pred CCCCCC--CCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccccccccccccccchhhhhhhhhhhhccccc
Q psy9719 1 MKEPKK--FRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKY 78 (248)
Q Consensus 1 m~~P~~--f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~gYl~f 78 (248)
||||++ ..+ +-..+....+.+|..+|.+||..||+++..++-. . |
T Consensus 220 l~~~s~~~i~~---v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~----~--------------------------~ 266 (411)
T KOG1305|consen 220 LKDRSVKKIQR---VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLH----N--------------------------Y 266 (411)
T ss_pred eeCchHHHHHH---HHHHHHHHHHHHHHHHHHhhhheecccchHHHHh----c--------------------------C
Confidence 688886 777 8899999999999999999999999998333222 1 1
Q ss_pred cCcccchhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q psy9719 79 GNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN 126 (248)
Q Consensus 79 G~~~~~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~ 126 (248)
++...+.+.++|.+..-..++........+..+|+..+ ..+.+.+.
T Consensus 267 -~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~-l~~~~~~~ 312 (411)
T KOG1305|consen 267 -DSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN-LDELLFPY 312 (411)
T ss_pred -CcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHhccc
Confidence 12245566678876777888888888888999999998 66666655
No 14
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=96.96 E-value=0.00038 Score=62.89 Aligned_cols=52 Identities=31% Similarity=0.728 Sum_probs=43.1
Q ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhcccccc
Q psy9719 1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQ 52 (248)
Q Consensus 1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~~~~ 52 (248)
||||++|++...++..++.+++++|..+|.+||..||+++..++-.+..++.
T Consensus 218 m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~ 269 (409)
T PF01490_consen 218 MKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDD 269 (409)
T ss_pred ccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcc
Confidence 8999999944449999999999999999999999999998555555544444
No 15
>PTZ00206 amino acid transporter; Provisional
Probab=96.72 E-value=0.00077 Score=62.53 Aligned_cols=45 Identities=24% Similarity=0.460 Sum_probs=39.4
Q ss_pred CCC--CCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhcc
Q psy9719 1 MKE--PKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNI 48 (248)
Q Consensus 1 m~~--P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~ 48 (248)
||| |++|.+ +++.++.+++++|..+|++||+.||++++.++-++.
T Consensus 282 M~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~ 328 (467)
T PTZ00206 282 MTNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMY 328 (467)
T ss_pred hcccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhC
Confidence 666 668888 999999999999999999999999999977775554
No 16
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=96.49 E-value=0.14 Score=47.48 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=22.9
Q ss_pred HHHhccchhHHHhHhhhhH--HHHHHHHHHHHHHHHHhccc
Q psy9719 158 FAMVIPHLDLLISLFGAFC--LASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 158 lA~~iP~~~~v~sliGa~~--~~~l~fi~P~~~yl~~~~~~ 196 (248)
+....|+.++.++.+.+.+ ...+.++++.+..+++++++
T Consensus 346 ~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~ 386 (474)
T TIGR03813 346 LFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQ 386 (474)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344677666565555443 33567788877776665443
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=96.49 E-value=0.18 Score=46.22 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=20.1
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRHER 197 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~ 197 (248)
++.+.++ +.....+.+.++.+.+++++++++
T Consensus 348 ~~~l~~~--~~~~~~i~y~~~~~~~~~lr~~~~ 378 (438)
T PRK10655 348 FNVLVNL--AVVTNIIPYILSMAALVIIQKVAN 378 (438)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4444444 334456788899888888776653
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.23 E-value=0.28 Score=45.05 Aligned_cols=21 Identities=5% Similarity=0.146 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc
Q psy9719 176 CLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 176 ~~~~l~fi~P~~~yl~~~~~~ 196 (248)
.+..+.|++|.+..+++.+++
T Consensus 359 ~~~li~y~~~~~~~~~l~~~~ 379 (445)
T PRK10644 359 IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 346788899999888876654
No 19
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=96.19 E-value=0.12 Score=47.53 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhh-h-hccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHh
Q psy9719 95 KLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQ-H-MIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLF 172 (248)
Q Consensus 95 ~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sli 172 (248)
+......+.-.+++..||-=.....+|.+... ..+ . ..+..+..++..+....+++.+.++.+|..-|++=++++-+
T Consensus 314 ~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~ 392 (443)
T PRK13629 314 TLEYAASIIALVAIFKSFFGHYLGTLEGLNGL-ILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM 392 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHh
Confidence 45666666666777777655555677877766 321 1 10101122344566777788899999999999999999977
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccccCCCcchHH-HHHhHHHHHHHHHHHHHHHH
Q psy9719 173 GAFCLASLGIIFPATIHILVLRHERIGFGFLNWV-LFKDIFLIAFGLFVMVSGTV 226 (248)
Q Consensus 173 Ga~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~-~~~~~~~i~~Gi~~~v~gt~ 226 (248)
|+-..+.+.|++|...-.|.-.-+ +++ +..|+++++.|++....-.|
T Consensus 393 ~gPiia~il~l~P~y~i~kvp~l~-------~yr~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 393 GAPIIASLLCLLPMYAIRKAPSLA-------KYRGRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred hhHHHHHHHHHHHHHHHHccHHHH-------HhCCCchhHHHHHHHHHHHHHHHH
Confidence 777778888899987655543222 222 33478999999887665544
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=96.17 E-value=0.13 Score=47.64 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=19.2
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLR 194 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~ 194 (248)
++.+.++. ..+..+.+++|++.+++.++
T Consensus 367 f~~l~~~~--~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 367 FGLLMALV--VATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 44444432 23567899999999999875
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=96.09 E-value=0.32 Score=45.10 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=21.6
Q ss_pred cchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 163 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
+.++.+.++. .....+.|.++++.++++.+++
T Consensus 350 ~~~~~l~~~~--~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 350 QAYNFAISLA--TSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566653 3356788999999888886553
No 22
>TIGR00909 2A0306 amino acid transporter.
Probab=95.97 E-value=0.17 Score=46.19 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=19.4
Q ss_pred ccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 162 IPHLDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 162 iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
..+++.+.++. ..+..+.+++.++-.+++++++
T Consensus 345 ~~~~~~l~~~~--~~~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 345 LVPLEGLAELT--SIGTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred HcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 34567776653 3344566777766666665544
No 23
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=95.83 E-value=0.093 Score=47.83 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=78.9
Q ss_pred CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-hhHHHhH
Q psy9719 93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-LDLLISL 171 (248)
Q Consensus 93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~~~v~sl 171 (248)
+.+...++.+.-.+++..||-=.....+|.+... ++.+. +...|.....+..+-.+++|..-|+ |...+++
T Consensus 268 ~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-~~~~~-------~~~~r~~~~~l~flppli~a~~~P~~F~~al~~ 339 (403)
T PRK15132 268 SPHVELAVHLFADLALATSFLGVALGLFDYLADL-FQRRN-------TVGGRLQTGLITFLPPLAFALFYPRGFVMALGY 339 (403)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCc-------cccCCchhehhhHHHHHHHHHHhHHHHHHHHHH
Confidence 4577777778777777777655555556666555 43211 1122455556677778889999888 6778888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccCCCcch--HHHHHhHHHHHHHHHHHHHH
Q psy9719 172 FGAFCLASLGIIFPATIHILVLRHERIGFGFLN--WVLFKDIFLIAFGLFVMVSG 224 (248)
Q Consensus 172 iGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~Gi~~~v~g 224 (248)
.|. ..+.+.+++|+++-++.++++.. +.++ -.+..+++.+++|++..+.-
T Consensus 340 aG~-~~ail~~ilP~~m~~~~r~~~~~--~~y~v~gg~~~~~~v~~~G~~~i~~~ 391 (403)
T PRK15132 340 AGV-ALAVLALLLPSLLVWQSRKQNPQ--AGYRVKGGRPALALVFLCGIAVIGIQ 391 (403)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhcCCC--CCccCCCChHHHHHHHHHHHHHHHHH
Confidence 775 57889999999999998765411 1111 02455677777777665543
No 24
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=95.69 E-value=1 Score=41.28 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=18.0
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
++.+.++. +....+.+++.++.++|.+++
T Consensus 351 ~~~l~~~~--~~~~l~~y~~~~~~~ir~~~~ 379 (435)
T PRK10435 351 FGELTGIA--VLLTMLPYFYSCVDLIRFEGV 379 (435)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhcCC
Confidence 44555552 344566778888888876543
No 25
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=95.54 E-value=0.061 Score=48.94 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=75.9
Q ss_pred CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHh
Q psy9719 93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLF 172 (248)
Q Consensus 93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sli 172 (248)
+.+...+..+.-.+++..|+-=.....+|.+.....+.+..+..+..++........++.+.++.+|..-|++=++++-+
T Consensus 277 ~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~ 356 (397)
T TIGR00814 277 AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEAL 356 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHh
Confidence 35666667777777777777666667788887762121111111122334455667778889999999999999999966
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccccCCCcchHH-HHHhHHHHHHHH
Q psy9719 173 GAFCLASLGIIFPATIHILVLRHERIGFGFLNWV-LFKDIFLIAFGL 218 (248)
Q Consensus 173 Ga~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~-~~~~~~~i~~Gi 218 (248)
|+-..+.+.|++|...-.|.-.-+ +++ +..++++++.|+
T Consensus 357 ~gp~~a~i~~~~p~~~~~~v~~l~-------~~~~~~~~~fv~~~g~ 396 (397)
T TIGR00814 357 GGPIIAMILFLMPMYAIYKVPALK-------KYRGRISNVFVTVIGL 396 (397)
T ss_pred hHHHHHHHHHHHHHHHHHccHHHH-------HhCCCcchheeEeeec
Confidence 777777888899987555543221 222 234666666554
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=95.50 E-value=0.42 Score=44.35 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=23.6
Q ss_pred HHHHhccchhHHHhHhhh--hHHHHHHHHHHHHHHHHHhccc
Q psy9719 157 AFAMVIPHLDLLISLFGA--FCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 157 ~lA~~iP~~~~v~sliGa--~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
.+....|+.....+.+-+ ..+..+.+.++.+-++++++++
T Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 400 (469)
T PRK11049 359 VLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQR 400 (469)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344456665444443333 2334577788888888877654
No 27
>KOG1287|consensus
Probab=95.27 E-value=0.22 Score=46.11 Aligned_cols=48 Identities=10% Similarity=-0.009 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccccc
Q psy9719 151 IVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERI 198 (248)
Q Consensus 151 i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~ 198 (248)
......++..++.|++.+++.++=.-.....+.+-+++|+|.++++..
T Consensus 342 f~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~ 389 (479)
T KOG1287|consen 342 FSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLP 389 (479)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 334444555567799999999988888888888999999999887743
No 28
>PRK15049 L-asparagine permease; Provisional
Probab=95.17 E-value=0.6 Score=43.74 Aligned_cols=29 Identities=7% Similarity=0.096 Sum_probs=20.8
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
++.++++ +..+..+.++++.+.+++.+|+
T Consensus 378 f~~l~~~--~~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 378 FEIVLNF--ASLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 3456688999999999988654
No 29
>PRK10238 aromatic amino acid transporter; Provisional
Probab=95.17 E-value=0.74 Score=42.54 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=21.5
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
++.+.++ +..+..+.+.+|.+.+++.+|++
T Consensus 358 f~~l~~~--~~~~~~i~y~~~~~~~l~~r~~~ 387 (456)
T PRK10238 358 FGLLMAL--VVSALVINWAMISLAHMKFRRAK 387 (456)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 33456789999999999987753
No 30
>PRK10746 putative transport protein YifK; Provisional
Probab=95.08 E-value=0.72 Score=42.72 Aligned_cols=43 Identities=7% Similarity=0.029 Sum_probs=27.5
Q ss_pred HHHHHHhccchhHHHhHhhhhH--HHHHHHHHHHHHHHHHhcccc
Q psy9719 155 TWAFAMVIPHLDLLISLFGAFC--LASLGIIFPATIHILVLRHER 197 (248)
Q Consensus 155 ~~~lA~~iP~~~~v~sliGa~~--~~~l~fi~P~~~yl~~~~~~~ 197 (248)
...+....|+-+.+++.+-+++ +..+.++++++.+++.+|+++
T Consensus 346 ~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~ 390 (461)
T PRK10746 346 GSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHK 390 (461)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344445666566655554433 347888899999999877543
No 31
>PLN03074 auxin influx permease; Provisional
Probab=95.01 E-value=0.26 Score=45.94 Aligned_cols=152 Identities=13% Similarity=-0.016 Sum_probs=83.8
Q ss_pred HHHHHhhhhhhhccccccchhhccccccccccccccch--hhhhhhhhhhhccccccCcccchhhhccCCCc-h-HHHHH
Q psy9719 25 FAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPT--FVHFEYSTGLCGYMKYGNDAQSSITLNIASDQ-K-LAQVV 100 (248)
Q Consensus 25 y~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~g~~gYl~fG~~~~~~il~n~p~~~-~-~~~~~ 100 (248)
+..++...|.+.|+.+..|+|++|++|++.+....+.. +.+.|+.+|+.||+.|| +++..+-+.-+ . -....
T Consensus 236 f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG----~~~~~~s~~l~~lp~~~~~ 311 (473)
T PLN03074 236 FTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFG----DELLTHSNAFSLLPRSGWR 311 (473)
T ss_pred HHHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeec----hhhhhchhHHhcCCCchHH
Confidence 33455578889999999999999999999886644433 33467889999999997 44432222101 1 11122
Q ss_pred HHHHHHHHHHHhccccchHHH-HHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHH
Q psy9719 101 KLLYALVVFFTYPLQNFVPLE-LLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLAS 179 (248)
Q Consensus 101 ~i~~~l~~~~s~pL~~~p~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~ 179 (248)
+....+.+ --.+..++..- -+... +++ . . ..+..+....|..+-....+++.++--.=-.++.+=|+.|+.
T Consensus 312 ~~~~~~~~--i~~~~sy~l~~~p~~~~-~e~-~---~-~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~ 383 (473)
T PLN03074 312 DAAVILML--IHQFITFGFACTPLYFV-WEK-A---I-GVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGAL 383 (473)
T ss_pred HHHHHHHH--HHHHHHHHHHHhhHHHH-HHH-H---h-cccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 22222211 11222222211 01111 111 1 1 222344556787777777777777666656666666677776
Q ss_pred HHHHHHHHH
Q psy9719 180 LGIIFPATI 188 (248)
Q Consensus 180 l~fi~P~~~ 188 (248)
.+-.+--++
T Consensus 384 ~~s~l~~i~ 392 (473)
T PLN03074 384 LVSFTVYII 392 (473)
T ss_pred HHHHHHHHH
Confidence 665543333
No 32
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=94.97 E-value=0.92 Score=41.60 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=19.8
Q ss_pred cchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 163 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
.+.+.+.++. ..+..+.++++.+.+++.++++
T Consensus 343 ~~~~~l~~~~--~~~~~~~y~~~~~a~i~lr~~~ 374 (442)
T TIGR00908 343 GQTALIILVS--VFGAIISYVLSMAAHFTLRIRR 374 (442)
T ss_pred ccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444432 2446678888888888776654
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=94.69 E-value=0.62 Score=42.28 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhh-----ccccccchhhHHHHHHHHHHHHHHHHHH---hcc--
Q psy9719 94 QKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHM-----IQYSERKKLIVEYVFRELIVLITWAFAM---VIP-- 163 (248)
Q Consensus 94 ~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~r~~i~~~~~~lA~---~iP-- 163 (248)
++...+..+...+..+.+..-.+....+.++.. -+++. .+.+ +.+...+-.. ...+++.++.. ..|
T Consensus 270 ~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~-a~d~~lP~~~~~~~-k~~~P~~a~~--~~~~i~~i~~~~~~~~~~~ 345 (426)
T PF13520_consen 270 SWLAIIVSIAAILSLFGSINAFIFGASRLLYAM-ARDGVLPKWFAKVN-KFGTPYNAII--LVAVISSILLLLFLFIPQS 345 (426)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSGGGGTTS-SSSSCHHHHH--HHHHHHHHHHHHTTTSSSS
T ss_pred cccccccccccccccccccchhhcchhhccccc-ccccchhhhhhhcc-ccCCceeeeh--hhhHHHHHHHHHHHhhhHH
Confidence 355566666666666665555555555555554 22211 1111 1111122111 12222222221 234
Q ss_pred chhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccc
Q psy9719 164 HLDLLISLFGAFCLASLGIIFPATIHILVLRHER 197 (248)
Q Consensus 164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~ 197 (248)
+++.+.++ +.....+.++++.+..++.+++++
T Consensus 346 ~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 346 SFDILVSL--SSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 45555553 344556777787777777766653
No 34
>PRK11387 S-methylmethionine transporter; Provisional
Probab=94.64 E-value=1.2 Score=41.21 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy9719 177 LASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 177 ~~~l~fi~P~~~yl~~~~~~ 196 (248)
...+.++++++.++++++++
T Consensus 374 ~~li~y~~~~~~~i~lr~~~ 393 (471)
T PRK11387 374 AVVAVWLSICASHFMFRRRH 393 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888776653
No 35
>PRK11021 putative transporter; Provisional
Probab=94.61 E-value=3.4 Score=37.46 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=22.8
Q ss_pred ccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 162 IPHLDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 162 iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
-.+++.+.++.. ....+.|.++.+-.+++.+++
T Consensus 331 ~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 331 GLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred hcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 457777777633 456788888888888776643
No 36
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=94.60 E-value=2.8 Score=38.89 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=20.2
Q ss_pred chhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 164 HLDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
+++.+.++ +..+..+.|.++.+-.+++++++
T Consensus 355 ~~~~l~~~--~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 355 AYNVLVSL--AVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555554 34456788888888888876654
No 37
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=94.58 E-value=0.71 Score=42.41 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=16.3
Q ss_pred hccchhHHHhHhhhhHHHHHHHHHHHHHHHH
Q psy9719 161 VIPHLDLLISLFGAFCLASLGIIFPATIHIL 191 (248)
Q Consensus 161 ~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~ 191 (248)
..++++.+.++..............+.+.+|
T Consensus 346 ~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr 376 (445)
T PRK11357 346 FVSDLTSLLGYFTLVMCFKNTLTFGSIIWCR 376 (445)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 3577777777655544333333344444433
No 38
>PRK10483 tryptophan permease; Provisional
Probab=94.37 E-value=0.71 Score=42.25 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-hhHHHhH
Q psy9719 93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-LDLLISL 171 (248)
Q Consensus 93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~~~v~sl 171 (248)
+.+....+.++..+++..||-=.....+|.+... ++.+. + ...|........+-..++|.+-|+ |-.-++.
T Consensus 279 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~-~k~~~----~---~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~y 350 (414)
T PRK10483 279 SRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADL-FGFDD----S---AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGY 350 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCC----c---cccceeeehhhHhhHHHHHHHhHHHHHHHHHH
Confidence 3466677777777788777655444556665554 43211 1 112333344556667788999888 7788999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 172 FGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 172 iGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
.|.. .+.+.-++|+++-++.+++
T Consensus 351 AG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 351 AGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhc
Confidence 8966 6777789999999999875
No 39
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=94.37 E-value=1.3 Score=40.72 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=20.2
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
++.++++.+... .+.+.++++.+++.+|+
T Consensus 340 ~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 340 FKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 566666655444 48888888888887663
No 40
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=94.28 E-value=1.1 Score=42.17 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=14.4
Q ss_pred CCCCC-CCCCCccchhhhHHHHHHHHHH
Q psy9719 1 MKEPK-KFRQPFGVFNIGIFLTAMLFAI 27 (248)
Q Consensus 1 m~~P~-~f~~~~~~l~~~~~~~~~~y~~ 27 (248)
||||+ ++|| ++..+..++..+|..
T Consensus 220 ~knP~r~~Pr---Ai~~~~i~~~~l~~l 244 (507)
T TIGR00910 220 LENPGRDYPL---AMILLMIAAICLDAI 244 (507)
T ss_pred ccCCcccccH---HHHHHHHHHHHHHHH
Confidence 46665 4666 666666666665553
No 41
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=93.68 E-value=2.6 Score=38.47 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCCCC-CCCCCccchhhhHHHHHHHHHHHHhhhhhhhc
Q psy9719 1 MKEPK-KFRQPFGVFNIGIFLTAMLFAITGLCGYMKYG 37 (248)
Q Consensus 1 m~~P~-~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G 37 (248)
+|||+ +.|+ ++..++.++..+|.......-...+
T Consensus 227 ~knp~r~ip~---aii~~~~~~~~~y~~~~~~~~~~~~ 261 (466)
T COG0531 227 VKNPKRTIPR---AIILSLLIVLILYILGALVIVGVLP 261 (466)
T ss_pred hcCccccccH---HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 68994 6799 9999999999999987665444433
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=93.39 E-value=0.95 Score=42.31 Aligned_cols=33 Identities=12% Similarity=-0.038 Sum_probs=16.0
Q ss_pred hccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 161 VIPHLDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 161 ~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
..+++..++++.+ ....+.+++..+-.++++++
T Consensus 383 ~~~~~~~l~~~~~--~~~~i~y~l~~~a~i~lR~~ 415 (501)
T TIGR00911 383 FSGDIYSLINLIS--FANWLFNALAVAGLLWLRYK 415 (501)
T ss_pred ccCCHHHHHHHHH--HHHHHHHHHHHHHHHheecc
Confidence 3556665555322 23345556555444444443
No 43
>PRK09664 tryptophan permease TnaB; Provisional
Probab=93.33 E-value=1.4 Score=40.32 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=73.9
Q ss_pred CchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhccc-hhHHHhH
Q psy9719 93 DQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPH-LDLLISL 171 (248)
Q Consensus 93 ~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~iP~-~~~v~sl 171 (248)
+.+...++.+...+++..||-=.....+|.+... ++.+ +++ ..|........+-..++|.+-|+ |=.-++.
T Consensus 280 ~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~-~~~~----~~~---~~r~~~~~ltflPPl~~al~~P~gFl~AL~y 351 (415)
T PRK09664 280 HGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL-FKID----NSH---GGRFKTVLLTFLPPALLYLIFPNGFIYGIGG 351 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC----Ccc---ccceeeehhhHhhhHHHHHHhhHHHHHHHHH
Confidence 4567777777877788777654444555555554 3321 111 12333344556667788998888 7888999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccCCCcch--HHHHHhHHHHHHHHHHHHH
Q psy9719 172 FGAFCLASLGIIFPATIHILVLRHERIGFGFLN--WVLFKDIFLIAFGLFVMVS 223 (248)
Q Consensus 172 iGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~--~~~~~~~~~i~~Gi~~~v~ 223 (248)
.|.. .+.+.-++|+++-++.+++... ..++ --+..-.+.+.+|++..+.
T Consensus 352 AG~~-~~il~~ilP~lM~~~~Rk~~~~--~~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 352 AGLC-ATIWAVIIPAVLAIKARKKFPN--QMFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhcccCC--CCceeeCCHHHHHHHHHHHHHHHHH
Confidence 8885 6688889999999999875221 1111 0133444555666555443
No 44
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=93.02 E-value=6.3 Score=36.55 Aligned_cols=30 Identities=10% Similarity=0.200 Sum_probs=20.6
Q ss_pred chhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 164 HLDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
.++.++++ +.....+.+.+|...+++.+|+
T Consensus 380 ~f~~l~~~--~~~~~~i~y~~~~~~~l~~~~~ 409 (482)
T TIGR00907 380 AFQAIFSV--CTVALDVSYVIPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC
Confidence 45555655 3445678899999998876554
No 45
>PRK10580 proY putative proline-specific permease; Provisional
Probab=92.79 E-value=4.2 Score=37.50 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy9719 178 ASLGIIFPATIHILVLRH 195 (248)
Q Consensus 178 ~~l~fi~P~~~yl~~~~~ 195 (248)
..+.++++++.+++.+++
T Consensus 368 ~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 368 TVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567889999888888765
No 46
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=92.55 E-value=2.5 Score=40.26 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=19.6
Q ss_pred chhHHHhHhhhhHHHHHHHHHHHHHHHHHhc
Q psy9719 164 HLDLLISLFGAFCLASLGIIFPATIHILVLR 194 (248)
Q Consensus 164 ~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~ 194 (248)
+++.+.++. ..+..+.|.++++..+.+++
T Consensus 382 ~~~~l~~l~--sig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 382 DLKALVDLL--SIGTLLAYSLVAACVLILRY 410 (557)
T ss_pred CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 566666653 34567889988777777664
No 47
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=91.32 E-value=5.2 Score=36.78 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy9719 178 ASLGIIFPATIHILVLRH 195 (248)
Q Consensus 178 ~~l~fi~P~~~yl~~~~~ 195 (248)
..+.+++..+.+++.+++
T Consensus 371 ~~~~y~~~~~~~i~~r~~ 388 (452)
T TIGR01773 371 ALLVYLVIAVSQLRMRKK 388 (452)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468888888777777654
No 48
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=90.56 E-value=12 Score=34.65 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=19.1
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
++.+.++. ..+..+.++++++.+++.+++
T Consensus 364 ~~~l~~~~--~~~~~i~y~~~~~~~i~~r~~ 392 (478)
T TIGR00913 364 FTWLLNIS--GLSGFFTWMCICLSHIRFRKA 392 (478)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 34444442 345668889999888888653
No 49
>PRK10836 lysine transporter; Provisional
Probab=89.83 E-value=12 Score=34.80 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q psy9719 176 CLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 176 ~~~~l~fi~P~~~yl~~~~~ 195 (248)
.+..+.+++.++.+++.+|+
T Consensus 380 ~~~~~~y~~~~~a~l~~R~~ 399 (489)
T PRK10836 380 MTGFIAWLGIAISHYRFRRG 399 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35567778888888887663
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=88.77 E-value=19 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=18.8
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
++.+.++. .....+.+++++..+++.+|+
T Consensus 394 f~~l~~l~--~~~~li~y~~~~~a~i~~r~~ 422 (496)
T PRK15238 394 FNILTLMA--NVSMTLPYLFLAGAFPFFKKK 422 (496)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 34445542 345678888888888887553
No 51
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=84.64 E-value=4.3 Score=36.01 Aligned_cols=37 Identities=16% Similarity=0.414 Sum_probs=30.0
Q ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhcccc
Q psy9719 1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDA 40 (248)
Q Consensus 1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~ 40 (248)
+|||++.+| +...+..+...+|...-...-..+|.+.
T Consensus 205 ~~~~~~~~k---~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 205 LSKKKKIKK---SIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred hCChhhhHH---HHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 588999998 9999999999999987776666666654
No 52
>TIGR00930 2a30 K-Cl cotransporter.
Probab=84.25 E-value=37 Score=34.69 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=13.9
Q ss_pred cchhHHHhHhhhhHHHHHHHHHHHHHHHH
Q psy9719 163 PHLDLLISLFGAFCLASLGIIFPATIHIL 191 (248)
Q Consensus 163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~ 191 (248)
.+++.+..++... ..++|.+=.+-.++
T Consensus 456 ~~l~~ia~lis~~--fLl~Y~lvnla~~~ 482 (953)
T TIGR00930 456 AELNTIAPIISNF--FLASYALINFSCFH 482 (953)
T ss_pred HhHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4677777765433 34445444444333
No 53
>KOG4303|consensus
Probab=83.66 E-value=0.58 Score=41.62 Aligned_cols=46 Identities=26% Similarity=0.525 Sum_probs=40.6
Q ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHhhhhhhhccccccchhhccc
Q psy9719 1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIA 49 (248)
Q Consensus 1 m~~P~~f~~~~~~l~~~~~~~~~~y~~~g~~gY~~~G~~~~~~~~~~~~ 49 (248)
|++|++|.- .+.|+-....++=..+|..+|..||++.+..+.++..
T Consensus 328 M~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp 373 (524)
T KOG4303|consen 328 MKNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP 373 (524)
T ss_pred cCChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC
Confidence 999999999 9999999999999999999999999998666555543
No 54
>KOG4812|consensus
Probab=70.71 E-value=7.9 Score=32.53 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhccchhHHHhHh---------hhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHH
Q psy9719 149 ELIVLITWAFAMVIPHLDLLISLF---------GAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLF 219 (248)
Q Consensus 149 ~~i~~~~~~lA~~iP~~~~v~sli---------Ga~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~ 219 (248)
-.+.+.++++|...+.++.++..+ ||.+|.-++++= |..+.+....-.+....+.++.|+++++|+.
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 345566677777777777776664 777777777654 4444443211001112246788999999999
Q ss_pred HHHHHHH--HHHHHHHHHhc
Q psy9719 220 VMVSGTV--ISLMDIFTAIQ 237 (248)
Q Consensus 220 ~~v~gt~--~si~~l~~~~~ 237 (248)
....|++ ..++++-+.++
T Consensus 236 l~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 236 LFLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHHhHHHHhhHHHHHh
Confidence 9999985 45566655544
No 55
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=65.30 E-value=91 Score=28.71 Aligned_cols=75 Identities=7% Similarity=0.060 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHH
Q psy9719 141 LIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIA 215 (248)
Q Consensus 141 ~~~~~~~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~ 215 (248)
+.+|...|....+.+.++.+..-+.+.++.+.+.+.+..+-+..++...+...|+.-..+..++|.+...|.+.+
T Consensus 324 ~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v~~ 398 (416)
T COG1914 324 WRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIVVI 398 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHHHH
Confidence 445667776555555554444448999999999998888888888887777766511000223455554444433
No 56
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=63.53 E-value=33 Score=26.92 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=44.8
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q psy9719 170 SLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHP 242 (248)
Q Consensus 170 sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~~~~~~~~~~ 242 (248)
+++|+-.+....|..|.+.+.. ..+..++...++ -.-.+-+++|+.++++|+..+-....++--++..|
T Consensus 33 ~~~~g~~~~~~gF~~Pt~y~~y-k~~~~~gv~~~~---~~pflSf~lG~~~m~~~~~~~~k~~y~kk~~~l~~ 101 (152)
T PF07954_consen 33 SNLGGYGGFMAGFFAPTAYYRY-KTGAIKGVPVPR---QKPFLSFLLGLGAMMAGSQLAGKYQYNKKLNSLDP 101 (152)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH-hcccccCCcCCc---cCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3566777788888998876654 222111101111 23446689999999999999998888876655444
No 57
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=59.70 E-value=1.5e+02 Score=27.46 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=13.0
Q ss_pred hHHHhHhhhhHHHHHHHHHHHHHHHHH
Q psy9719 166 DLLISLFGAFCLASLGIIFPATIHILV 192 (248)
Q Consensus 166 ~~v~sliGa~~~~~l~fi~P~~~yl~~ 192 (248)
+.++++ ++.+..+.|.+|.+..+..
T Consensus 375 ~~l~s~--~~~~~~~~Y~~~~~~~l~~ 399 (475)
T TIGR03428 375 ATLASV--CIVLIYLAYLLVTVPLLLR 399 (475)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 444443 2334567777765544443
No 58
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=55.48 E-value=1.2e+02 Score=27.80 Aligned_cols=162 Identities=12% Similarity=0.015 Sum_probs=82.1
Q ss_pred HHHHhhhhhhhccccccchhhccccccccccccccchhh--hhhhhhhhhccccccCcccchhhhccCCCchHHHHHHHH
Q psy9719 26 AITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFV--HFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLL 103 (248)
Q Consensus 26 ~~~g~~gY~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~y~~~g~~gYl~fG~~~~~~il~n~p~~~~~~~~~~i~ 103 (248)
..++++-+.+-+|...+|+...++++.++ .+.+...+. .-..+....++..|+ .+..+-+ ++.+..-.+.-
T Consensus 197 ~~ipv~vfsF~~h~~i~si~~~~~~~~~~-~~~k~~~~~~~~~~vlyi~~~~~~~~-----~~~~~~~-~~il~~~~~~~ 269 (415)
T COG0814 197 LAIPVFVFSFGFHGNIPSLVNYMRKNSKK-AVRKAILIGSLIALVLYILVGFFVFG-----CFGSLVF-GNILAAKEQNI 269 (415)
T ss_pred HHhhHHHhhhhCCccchHHHHHhccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcccH-HHHHHccCchH
Confidence 34555566666777777887777776666 222222222 234566677777664 3333333 23443333333
Q ss_pred HHHHHHHHhccccchHHHHHHHHH----Hhhhh-c------cccc---c--chhhHHHHHHHHHHHHHHHHHHhccc-hh
Q psy9719 104 YALVVFFTYPLQNFVPLELLWVNY----IKQHM-I------QYSE---R--KKLIVEYVFRELIVLITWAFAMVIPH-LD 166 (248)
Q Consensus 104 ~~l~~~~s~pL~~~p~~~~~~~~~----l~~~~-~------~~~~---~--~~~~~~~~~r~~i~~~~~~lA~~iP~-~~ 166 (248)
..+.....+... +.....-+.+ +.... + +..+ + +.+..|..........+.+.++..|. +-
T Consensus 270 ~~l~~~~~~~~~--~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~ 347 (415)
T COG0814 270 SLLSALAGVINS--PILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFA 347 (415)
T ss_pred HHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 333333332222 1122211110 11111 0 0000 1 11111334444455556666666554 56
Q ss_pred HHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 167 LLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 167 ~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
...+..|++..+..+-+.|.+++++-.+..
T Consensus 348 ~~~~~~~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 348 IALGYAGGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677778888888999999999999875543
No 59
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=52.16 E-value=1.8e+02 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=16.6
Q ss_pred CCCCCCCCCccchhhhHHHHHHHH---HHHHhhhhhhhc
Q psy9719 2 KEPKKFRQPFGVFNIGIFLTAMLF---AITGLCGYMKYG 37 (248)
Q Consensus 2 ~~P~~f~~~~~~l~~~~~~~~~~y---~~~g~~gY~~~G 37 (248)
|++++-+| ...++..+....+ ..+|..++..+.
T Consensus 230 ks~~~~r~---~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 230 KSAKHAKK---GCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred CCHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666 5554544333333 344555555543
No 60
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=51.34 E-value=89 Score=25.57 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=51.7
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhccccc---CCC--cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRHERI---GFG--FLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTA 235 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~---~~~--~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~~~ 235 (248)
++...-..|++.++-+..++|+...+...+++-- +.. -+|.......+.-.+|+++++.+...|...+.+.
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 4556667788888889999999999998776310 000 1234456677888889999999988888888774
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=46.06 E-value=44 Score=30.08 Aligned_cols=28 Identities=21% Similarity=0.142 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhccch--hHHHhHhhhhH
Q psy9719 149 ELIVLITWAFAMVIPHL--DLLISLFGAFC 176 (248)
Q Consensus 149 ~~i~~~~~~lA~~iP~~--~~v~sliGa~~ 176 (248)
+++.+++.+++...|+. -++..+..+..
T Consensus 348 ~v~~~i~~~la~~~~~~~i~~~~~~~~~~~ 377 (406)
T PF00474_consen 348 VVIGIIAILLALFFPDSGIIDLILFAFGIL 377 (406)
T ss_dssp HHHHHHHHHHGGGGGGSSHHHHHHHHHTTT
T ss_pred EeeHHhHHHHHhccccchHHHHHHHHHHHH
Confidence 33445566677777774 44444444433
No 62
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=42.82 E-value=2.5e+02 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=15.1
Q ss_pred HHHHHHhccchhHHHhHhhhhHHHHHHHH
Q psy9719 155 TWAFAMVIPHLDLLISLFGAFCLASLGII 183 (248)
Q Consensus 155 ~~~lA~~iP~~~~v~sliGa~~~~~l~fi 183 (248)
..+..+..|-+....+..++-....+++.
T Consensus 113 ~~~~~ll~Pl~~~~~~~~~~~~~~~~~~l 141 (386)
T PF05975_consen 113 LLVFLLLLPLLMQVYGFSFWEFLLLLLFL 141 (386)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33444456766666665555444444433
No 63
>PRK10484 putative transporter; Provisional
Probab=40.84 E-value=3.2e+02 Score=25.76 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=7.5
Q ss_pred hhhhhccccccC
Q psy9719 69 STGLCGYMKYGN 80 (248)
Q Consensus 69 ~~g~~gYl~fG~ 80 (248)
..|+.++..|++
T Consensus 296 ~~G~~a~~~~p~ 307 (523)
T PRK10484 296 LPGIIAFHLYGD 307 (523)
T ss_pred HHHHHHHHHhcc
Confidence 456666666654
No 64
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=37.13 E-value=3.5e+02 Score=25.19 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=58.5
Q ss_pred hhhhhhhhccccccCcc-cchhhhccCCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHH
Q psy9719 66 FEYSTGLCGYMKYGNDA-QSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVE 144 (248)
Q Consensus 66 ~y~~~g~~gYl~fG~~~-~~~il~n~p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 144 (248)
+..+.|...-.+=|+.. ..+....+. .+...+.+...++...+--..+|...-...+. .. +.++..+
T Consensus 242 ~~~ilGa~~a~a~g~~~~~~~~~~~~G---~~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i-~~--------~l~k~~~ 309 (442)
T COG1457 242 FMMILGAALAAAAGNADSIADVMLGLG---GFGLPAILILVLGTVTTNANNLYSAGLSFANI-IP--------KLSKVTR 309 (442)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHhcc---cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-hh--------hhhhHHH
Confidence 45778888877777665 333333333 25555666666666666555666553333322 11 1222333
Q ss_pred HHHHHHHHHHHHHHHH----hccchhHHHhHhhhhHHHHHHHHHHHHHHHHH
Q psy9719 145 YVFRELIVLITWAFAM----VIPHLDLLISLFGAFCLASLGIIFPATIHILV 192 (248)
Q Consensus 145 ~~~r~~i~~~~~~lA~----~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~ 192 (248)
.+...+. +.+++|+ +..++..++.++|+.........+ +=+|+..
T Consensus 310 ~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i-ad~~~~r 358 (442)
T COG1457 310 VVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI-ADYFIVR 358 (442)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 3322222 2233333 466788999999988755444433 4444443
No 65
>PRK12488 acetate permease; Provisional
Probab=35.69 E-value=3.9e+02 Score=25.38 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhccchhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 147 FRELIVLITWAFAMVIPHLDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 147 ~r~~i~~~~~~lA~~iP~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
...++.+++..+|...|+.+ +..+++-..+..-+..+|. +.+-++|++
T Consensus 408 ~~vvvgv~a~~~a~~~~~~~-i~~l~~~~~~~~a~~~~p~-lllgl~wkr 455 (549)
T PRK12488 408 ATLGIGLLAVVLGLMFESQN-IAFLSGLVLAIAASVNFPV-LFLSMFWKG 455 (549)
T ss_pred HHHHHHHHHHHHHHccCCCc-HHHHHHHHHHHHHHHHHHH-HHHHHHhCC
Confidence 33444455666777666522 3333333333333445565 334555554
No 66
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.56 E-value=78 Score=23.81 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhccCCCc
Q psy9719 211 IFLIAFGLFVMVSGT----VISLMDIFTAIQEDFHP 242 (248)
Q Consensus 211 ~~~i~~Gi~~~v~gt----~~si~~l~~~~~~~~~~ 242 (248)
+..|++|++++++|+ ++-++.+.++.+.|.+|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 345555555555555 45555555554445444
No 67
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=33.94 E-value=3.9e+02 Score=24.78 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhccch
Q psy9719 150 LIVLITWAFAMVIPHL 165 (248)
Q Consensus 150 ~i~~~~~~lA~~iP~~ 165 (248)
++.++...+|...|+.
T Consensus 376 ~~~~~~~~~a~~~~~~ 391 (483)
T PRK09442 376 ILGLLVLLAALKPPDM 391 (483)
T ss_pred HHHHHHHHHHhCCchH
Confidence 3445555677666754
No 68
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.60 E-value=71 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=11.5
Q ss_pred hHHHhHhhhhHHHHHHHHH
Q psy9719 166 DLLISLFGAFCLASLGIIF 184 (248)
Q Consensus 166 ~~v~sliGa~~~~~l~fi~ 184 (248)
+.+..++.++.+..+..|+
T Consensus 64 ~~i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHHH
Confidence 3566666666656566565
No 69
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=32.02 E-value=3.4e+02 Score=23.54 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q psy9719 177 LASLGIIFPATIHILVLRH 195 (248)
Q Consensus 177 ~~~l~fi~P~~~yl~~~~~ 195 (248)
.+.+++ .|+...+...-.
T Consensus 248 ~~~i~~-~P~~~~~~~~~~ 265 (303)
T PF10327_consen 248 TSSICI-LPPFIFVVVVIF 265 (303)
T ss_pred HHHHHH-HHHHHhhhhhee
Confidence 344555 777776655433
No 70
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=31.08 E-value=2.9e+02 Score=22.43 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q psy9719 183 IFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAIQEDFHPKT 244 (248)
Q Consensus 183 i~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~~l~~~~~~~~~~~~ 244 (248)
++|.++-+.-.++.+. +..+...+...++|+.-.+.|......+..+.++++...++
T Consensus 82 ~ip~~~G~~s~~rN~i-----~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~~~~~~~ 138 (186)
T PF07086_consen 82 LIPSLLGLLSLRRNNI-----SLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRHGKAYRF 138 (186)
T ss_pred HHHHHHHHHhcccchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccce
Confidence 5666666665555421 34455667888999999999999999999988887665543
No 71
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=29.26 E-value=3.6e+02 Score=23.96 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=26.4
Q ss_pred HHhHhhhhHHHHHHHHHHHHHHHHHhcccccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9719 168 LISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLM 230 (248)
Q Consensus 168 v~sliGa~~~~~l~fi~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~Gi~~~v~gt~~si~ 230 (248)
+-.++||++...+++.+--..--.+.|-| .|..-....-+++|.++.+.|...|..
T Consensus 42 v~~ligai~~~li~~~~~~~~~~~~~~le-------~~i~k~~~~~ilf~tiGLiiGLlia~l 97 (356)
T COG4956 42 VDALIGAIIFFLISFWFGKYVLNWLKRLE-------EQIRKLPVTTILFGTIGLIIGLLIAVL 97 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 34467777665555544332222222222 122223445556666666666554443
No 72
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=29.26 E-value=3.9e+02 Score=23.36 Aligned_cols=26 Identities=4% Similarity=0.100 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9719 211 IFLIAFGLFVMVSGTVISLMDIFTAI 236 (248)
Q Consensus 211 ~~~i~~Gi~~~v~gt~~si~~l~~~~ 236 (248)
+.+++.|++.+..|.+.+++...+..
T Consensus 281 ~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 281 LLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35577788888899999998888765
No 73
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=29.23 E-value=4.5e+02 Score=24.05 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=15.4
Q ss_pred ccchhHHHhHhhhhHHHHHHHHH
Q psy9719 162 IPHLDLLISLFGAFCLASLGIIF 184 (248)
Q Consensus 162 iP~~~~v~sliGa~~~~~l~fi~ 184 (248)
.+.+.++++++|...+......+
T Consensus 356 ~~~~~~FL~~lg~~~~P~~gI~l 378 (442)
T TIGR00800 356 SSKFTTFLSSIGGFLSPIAGVMI 378 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888887766555443
No 74
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=25.84 E-value=3.8e+02 Score=22.04 Aligned_cols=36 Identities=8% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q psy9719 91 ASDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN 126 (248)
Q Consensus 91 p~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~ 126 (248)
...|....-.+++..++..++.|...+-.-.-+...
T Consensus 52 ~~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~Pg 87 (215)
T TIGR00945 52 SPTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPG 87 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 335888999999999999999999876554444333
No 75
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=25.40 E-value=2e+02 Score=23.06 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=10.9
Q ss_pred HhhhhHHH-HHHHHHHHH
Q psy9719 171 LFGAFCLA-SLGIIFPAT 187 (248)
Q Consensus 171 liGa~~~~-~l~fi~P~~ 187 (248)
|+||..+. .++|.+|.+
T Consensus 75 lLGa~ac~a~~~fmfpVl 92 (201)
T COG5102 75 LLGAGACSAFLYFMFPVL 92 (201)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 34665554 777778765
No 76
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=24.37 E-value=4e+02 Score=21.79 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=27.3
Q ss_pred CCchHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q psy9719 92 SDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVN 126 (248)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~ 126 (248)
..|....-.+++..++++.+.|...+-.-.-+...
T Consensus 57 ~~e~f~~~lk~s~~~~~~~~~P~~~yq~w~Fi~Pg 91 (215)
T PF00902_consen 57 PTEAFFTYLKLSFFLGLIISLPYILYQIWAFIAPG 91 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 35788899999999999999999777665444443
No 77
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=2.9e+02 Score=22.94 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=24.6
Q ss_pred HHHHhccchhHHHhHhhhhHHHHHHHHHHH
Q psy9719 157 AFAMVIPHLDLLISLFGAFCLASLGIIFPA 186 (248)
Q Consensus 157 ~lA~~iP~~~~v~sliGa~~~~~l~fi~P~ 186 (248)
...++=|..+.+.+++|++.++.++|.+==
T Consensus 75 ~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R 104 (223)
T COG0398 75 GGLLFGPFLGFLYSLIGATAGSTLAFLLAR 104 (223)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566889999999999999999988643
No 78
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=23.65 E-value=5.8e+02 Score=23.48 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=23.5
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhcc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRH 195 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~ 195 (248)
++. +++.||-.++.++..+.++..+....+
T Consensus 191 ~g~-lGv~GAA~AT~ia~~~~~~~~~~~~~~ 220 (455)
T COG0534 191 FGG-LGVAGAALATVIARWIGALLLLIYLLR 220 (455)
T ss_pred ccc-ccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 999999999999999888776666543
No 79
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=23.56 E-value=3.1e+02 Score=20.26 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=22.7
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 204 NWVLFKDIFLIAFGLFVMVSGTVISLMDI 232 (248)
Q Consensus 204 ~~~~~~~~~~i~~Gi~~~v~gt~~si~~l 232 (248)
++....+..+-.+|.+..+.|......+-
T Consensus 32 ~~~~~~H~~lq~l~~~~~~~G~~~~~~~~ 60 (137)
T PF03188_consen 32 KWWFRIHWILQVLALVFAIIGFVAIFINK 60 (137)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456788888899999999988877654
No 80
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.83 E-value=3e+02 Score=19.90 Aligned_cols=21 Identities=5% Similarity=0.045 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy9719 209 KDIFLIAFGLFVMVSGTVISL 229 (248)
Q Consensus 209 ~~~~~i~~Gi~~~v~gt~~si 229 (248)
....++++|++.++...|.-+
T Consensus 76 ~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 76 WTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344577778777777665443
No 81
>KOG1286|consensus
Probab=21.82 E-value=7.2e+02 Score=23.87 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=17.6
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLR 194 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~ 194 (248)
++.++++.|- ++++++..=++.|++.++
T Consensus 395 f~~L~~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 395 FNWLVNLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence 5888887654 445566665666666554
No 82
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=21.46 E-value=4.4e+02 Score=22.51 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=25.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhccccchHHHHH
Q psy9719 92 SDQKLAQVVKLLYALVVFFTYPLQNFVPLELL 123 (248)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~ 123 (248)
+-|++..-.++++..+++.+.|...+-.-..+
T Consensus 67 p~e~~~~~ik~a~~~gl~~a~P~i~yq~w~Fi 98 (255)
T COG0805 67 PTEPFFTYIKLALFAGLLLALPVILYQLWAFI 98 (255)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999998766554333
No 83
>PRK00701 manganese transport protein MntH; Reviewed
Probab=21.31 E-value=6.5e+02 Score=23.21 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhc--cchhHHHhHhhhhHHHHHHHHHHH
Q psy9719 142 IVEYVFRELIVLITWAFAMVI--PHLDLLISLFGAFCLASLGIIFPA 186 (248)
Q Consensus 142 ~~~~~~r~~i~~~~~~lA~~i--P~~~~v~sliGa~~~~~l~fi~P~ 186 (248)
.+|...|.+.++.+.+++..- .+...++-... ....+.+|.
T Consensus 347 ~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aq----v~~~i~LP~ 389 (439)
T PRK00701 347 VRRLITRGLAMVPALIVILLGGELDPTRLLVLSQ----VVLSFGLPF 389 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----HHHHHHHHH
Confidence 455555655555444444433 23334443333 334445554
No 84
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.89 E-value=4e+02 Score=20.55 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=22.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy9719 204 NWVLFKDIFLIAFGLFVMVSGTVISLMD 231 (248)
Q Consensus 204 ~~~~~~~~~~i~~Gi~~~v~gt~~si~~ 231 (248)
++++..++.+-..++++.+.|.+...+.
T Consensus 38 ~~~k~iH~~l~~la~~~~vvGl~avf~~ 65 (144)
T cd08766 38 EVQKAVHLTLHLVALVLGIVGIYAAFKF 65 (144)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557789999999999999998665443
Done!