Query psy9719
Match_columns 248
No_of_seqs 146 out of 1397
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 17:50:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.6 0.042 1.4E-06 49.7 14.0 30 165-196 367-396 (511)
2 3l1l_A Arginine/agmatine antip 95.8 0.051 1.7E-06 48.1 10.1 30 165-196 350-379 (445)
3 3gia_A Uncharacterized protein 94.9 0.17 5.7E-06 44.8 10.4 33 163-197 338-370 (444)
4 4b4a_A TATC, SEC-independent p 75.6 29 0.00098 28.3 10.4 97 92-194 57-176 (249)
5 3dh4_A Sodium/glucose cotransp 68.4 27 0.00091 31.7 9.5 25 149-173 375-399 (530)
6 3tx3_A Uncharacterized protein 29.6 2.2E+02 0.0076 22.9 12.8 17 155-171 153-170 (249)
7 1afo_A Glycophorin A; integral 24.3 1E+02 0.0035 17.3 4.6 23 212-234 13-35 (40)
8 2xq2_A Sodium/glucose cotransp 21.5 4.6E+02 0.016 23.7 13.3 28 149-176 404-431 (593)
9 2kdc_A Diacylglycerol kinase; 20.0 1.2E+02 0.004 21.7 3.9 32 212-243 58-89 (121)
10 3mp7_B Preprotein translocase 12.1 99 0.0034 19.3 1.5 17 19-35 35-51 (61)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.59 E-value=0.042 Score=49.69 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=17.7
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
++.+.++.+ .+..+++.++.+.+++..+++
T Consensus 367 f~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~ 396 (511)
T 4djk_A 367 FLIALALTV--VIYLCAYFMLFIGYIVLVLKH 396 (511)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 344444432 345677888887776665543
No 2
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.81 E-value=0.051 Score=48.11 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=21.7
Q ss_pred hhHHHhHhhhhHHHHHHHHHHHHHHHHHhccc
Q psy9719 165 LDLLISLFGAFCLASLGIIFPATIHILVLRHE 196 (248)
Q Consensus 165 ~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~ 196 (248)
++.+.++.+ .+..+++.++++.+++.++++
T Consensus 350 ~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 350 FGLVSSVSV--IFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 556666543 456788999999999887765
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=94.95 E-value=0.17 Score=44.78 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=23.9
Q ss_pred cchhHHHhHhhhhHHHHHHHHHHHHHHHHHhcccc
Q psy9719 163 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHER 197 (248)
Q Consensus 163 P~~~~v~sliGa~~~~~l~fi~P~~~yl~~~~~~~ 197 (248)
.+++.+.++. ..+..++|.++.+.+++.+++++
T Consensus 338 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 338 FNMEGVASIT--SAVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp SCHHHHHHHH--HHHHHHHHHHHHHHHHHTHHHHC
T ss_pred cCHHHHHHHH--HHHHHHHHHHHHHHHHHhhhcCC
Confidence 4678777773 34567888898888888876653
No 4
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=75.55 E-value=29 Score=28.32 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=57.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHhc---------
Q psy9719 92 SDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVI--------- 162 (248)
Q Consensus 92 ~~~~~~~~~~i~~~l~~~~s~pL~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~i~~~~~~lA~~i--------- 162 (248)
..+....-.+++...+++++.|...+-.-.-+... +.+ .|++...........+.......|.++
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~Pg-Ly~-----~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl 130 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIEPA-LYS-----HEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFL 130 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSC-----CCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888899999999999999998765442222222 221 122222222333444444444444421
Q ss_pred -----------c--chhHHHhHhhhhH-HHHHHHHHHHHHHHHHhc
Q psy9719 163 -----------P--HLDLLISLFGAFC-LASLGIIFPATIHILVLR 194 (248)
Q Consensus 163 -----------P--~~~~v~sliGa~~-~~~l~fi~P~~~yl~~~~ 194 (248)
| ++++.++++-.+. ..-++|-+|.++.+-..-
T Consensus 131 ~~~~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~ 176 (249)
T 4b4a_A 131 LGLGFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKA 176 (249)
T ss_dssp TCSSSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred HhcchhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5 6777777766554 344788899988876653
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=68.38 E-value=27 Score=31.66 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhccchhHHHhHhh
Q psy9719 149 ELIVLITWAFAMVIPHLDLLISLFG 173 (248)
Q Consensus 149 ~~i~~~~~~lA~~iP~~~~v~sliG 173 (248)
.++.+++..+|...++++.+++++-
T Consensus 375 v~~~i~a~~~a~~~~~~~~~~~~~~ 399 (530)
T 3dh4_A 375 VVALIIACLIAPMLGGIGQAFQYIQ 399 (530)
T ss_dssp HHHHHHHHHHGGGGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344455556655555555555433
No 6
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=29.58 E-value=2.2e+02 Score=22.90 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=9.9
Q ss_pred HHHHHHh-ccchhHHHhH
Q psy9719 155 TWAFAMV-IPHLDLLISL 171 (248)
Q Consensus 155 ~~~lA~~-iP~~~~v~sl 171 (248)
..++-.+ +|.++.++.+
T Consensus 153 ~ll~L~f~IP~vg~vl~~ 170 (249)
T 3tx3_A 153 GFFLLSLVIPVIGQVLWY 170 (249)
T ss_dssp HHHHHHHHSTTHHHHHHH
T ss_pred HHHHHHhccchHHHHHHH
Confidence 3344445 8988874444
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=24.30 E-value=1e+02 Score=17.35 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 212 FLIAFGLFVMVSGTVISLMDIFT 234 (248)
Q Consensus 212 ~~i~~Gi~~~v~gt~~si~~l~~ 234 (248)
.++++|+++++.|+...+.--++
T Consensus 13 ~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777655544443
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=21.46 E-value=4.6e+02 Score=23.74 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhccchhHHHhHhhhhH
Q psy9719 149 ELIVLITWAFAMVIPHLDLLISLFGAFC 176 (248)
Q Consensus 149 ~~i~~~~~~lA~~iP~~~~v~sliGa~~ 176 (248)
.++.+++.++|....+.+.+++++....
T Consensus 404 v~~~~ia~~~a~~~~~~~~i~~~~~~~~ 431 (593)
T 2xq2_A 404 VVALIIAALIAPMLGGIGQCFQYIQEYT 431 (593)
T ss_dssp HHHHHHHHHHGGGGGGCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 3344445556655555566665554433
No 9
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=20.00 E-value=1.2e+02 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q psy9719 212 FLIAFGLFVMVSGTVISLMDIFTAIQEDFHPK 243 (248)
Q Consensus 212 ~~i~~Gi~~~v~gt~~si~~l~~~~~~~~~~~ 243 (248)
+++.++++...=-.-++++..+|..+++.||.
T Consensus 58 li~~i~lVl~~EllNTAIE~vvD~v~~e~h~l 89 (121)
T 2kdc_A 58 LISSVMLVMIVEILNSAIEAVVDRIGSEYHEL 89 (121)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTCCCCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccCHH
Confidence 44455666666667889999998888888875
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=12.06 E-value=99 Score=19.26 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhhhh
Q psy9719 19 FLTAMLFAITGLCGYMK 35 (248)
Q Consensus 19 ~~~~~~y~~~g~~gY~~ 35 (248)
-++.+-+.++|..||..
T Consensus 35 k~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 35 KITGLGIILIGLIGMLI 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556677788888853
Done!