Query psy9719
Match_columns 248
No_of_seqs 146 out of 1397
Neff 8.5
Searched_HMMs 13730
Date Fri Aug 16 17:50:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fufa1 d.89.1.1 (A:131-256) T 12.7 36 0.0026 22.9 1.3 9 1-9 2-10 (126)
2 d1v54d_ f.23.1.1 (D:) Mitochon 9.8 1.9E+02 0.014 19.6 4.4 29 216-244 79-107 (144)
3 d1rh5b_ f.23.28.1 (B:) Preprot 8.9 63 0.0046 18.4 1.3 16 20-35 29-44 (56)
4 d1ciya3 f.1.3.1 (A:33-255) del 7.3 1.4E+02 0.01 21.5 3.1 26 149-174 6-31 (223)
5 d1q90r_ f.23.12.1 (R:) ISP sub 5.1 2.4E+02 0.018 14.4 2.9 19 172-190 18-36 (39)
6 d1dlca3 f.1.3.1 (A:61-289) del 4.7 2.2E+02 0.016 20.5 2.8 35 148-186 7-42 (229)
7 d2e74f1 f.23.25.1 (F:1-32) Pet 3.2 3.2E+02 0.023 12.9 4.5 26 207-232 4-29 (32)
8 d1qnaa2 d.129.1.1 (A:116-198) 3.1 1.6E+02 0.012 17.5 0.6 7 3-9 29-35 (83)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 2.9 3.9E+02 0.028 13.2 3.1 17 178-194 11-27 (36)
10 d1aisa1 d.129.1.1 (A:1-92) TAT 2.9 1.8E+02 0.013 17.7 0.6 10 3-15 39-48 (92)
No 1
>d2fufa1 d.89.1.1 (A:131-256) The origin DNA-binding domain of SV40 T-antigen {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=12.73 E-value=36 Score=22.86 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=7.9
Q ss_pred CCCCCCCCC
Q psy9719 1 MKEPKKFRQ 9 (248)
Q Consensus 1 m~~P~~f~~ 9 (248)
|++|++||.
T Consensus 2 ~~~P~D~P~ 10 (126)
T d2fufa1 2 VEDPKDFPS 10 (126)
T ss_dssp CCCCSSSCG
T ss_pred CCCcccCcH
Confidence 789999987
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.84 E-value=1.9e+02 Score=19.60 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccc
Q psy9719 216 FGLFVMVSGTVISLMDIFTAIQEDFHPKT 244 (248)
Q Consensus 216 ~Gi~~~v~gt~~si~~l~~~~~~~~~~~~ 244 (248)
+|.+...+|....+.-+.+.+-.+..|.|
T Consensus 79 ~g~~~~~i~~s~~i~~~~r~~v~p~~P~T 107 (144)
T d1v54d_ 79 VGAAMFFIGFTALLLIWEKHYVYGPIPHT 107 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34444445555555556666666666655
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.88 E-value=63 Score=18.37 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhhh
Q psy9719 20 LTAMLFAITGLCGYMK 35 (248)
Q Consensus 20 ~~~~~y~~~g~~gY~~ 35 (248)
++.+-+.++|+.||.-
T Consensus 29 v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 29 VTALGISLLGIIGYII 44 (56)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444556677777753
No 4
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=7.28 E-value=1.4e+02 Score=21.50 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhccchhHHHhHhhh
Q psy9719 149 ELIVLITWAFAMVIPHLDLLISLFGA 174 (248)
Q Consensus 149 ~~i~~~~~~lA~~iP~~~~v~sliGa 174 (248)
+.+-+..++++.++|..|.++++++-
T Consensus 6 i~~~~~~~ll~~~iP~~g~~~~li~~ 31 (223)
T d1ciya3 6 ISLSLTQFLLSEFVPGAGFVLGLVDI 31 (223)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHHHH
T ss_pred hHHHHHHHHhhhcCCchHHHHHHHHH
Confidence 44556778888889998877766543
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.14 E-value=2.4e+02 Score=14.43 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q psy9719 172 FGAFCLASLGIIFPATIHI 190 (248)
Q Consensus 172 iGa~~~~~l~fi~P~~~yl 190 (248)
.|+++........|-+-|.
T Consensus 18 ~G~~~~~~~g~l~py~~fF 36 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAFF 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEEe
Confidence 4666666666666655443
No 6
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=4.67 E-value=2.2e+02 Score=20.46 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHh-ccchhHHHhHhhhhHHHHHHHHHHH
Q psy9719 148 RELIVLITWAFAMV-IPHLDLLISLFGAFCLASLGIIFPA 186 (248)
Q Consensus 148 r~~i~~~~~~lA~~-iP~~~~v~sliGa~~~~~l~fi~P~ 186 (248)
.+.+-++..+++.. +|..+.++++++ ..+-++.|.
T Consensus 7 ~~~~~i~~~il~~~~~P~~g~~~~~~~----~i~~~lwP~ 42 (229)
T d1dlca3 7 QKGISVVGDLLGVVGFPFGGALVSFYT----NFLNTIWPS 42 (229)
T ss_dssp HHHHHHHHHHTTSCBSCCHHHHHHHHH----HHHHHTSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH----HHHHHhCCC
Confidence 34444444444443 788777766544 334455664
No 7
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.18 E-value=3.2e+02 Score=12.85 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=18.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy9719 207 LFKDIFLIAFGLFVMVSGTVISLMDI 232 (248)
Q Consensus 207 ~~~~~~~i~~Gi~~~v~gt~~si~~l 232 (248)
.+++..++-||++....|...-+.++
T Consensus 4 eil~aa~lsfglifvgwglgalllki 29 (32)
T d2e74f1 4 EMLYAALLSFGLIFVGWGLGVLLLKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhHHHHHHhhh
Confidence 35677888888888887776655443
No 8
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.10 E-value=1.6e+02 Score=17.53 Aligned_cols=7 Identities=43% Similarity=0.733 Sum_probs=3.6
Q ss_pred CCCCCCC
Q psy9719 3 EPKKFRQ 9 (248)
Q Consensus 3 ~P~~f~~ 9 (248)
||++||.
T Consensus 29 ePe~fpg 35 (83)
T d1qnaa2 29 EPELFPG 35 (83)
T ss_dssp CTTTCSS
T ss_pred ChhhCCe
Confidence 4555554
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.87 E-value=3.9e+02 Score=13.20 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy9719 178 ASLGIIFPATIHILVLR 194 (248)
Q Consensus 178 ~~l~fi~P~~~yl~~~~ 194 (248)
+.+-.+.|..|-+.++-
T Consensus 11 t~LFilvPt~FLliLyv 27 (36)
T d2axtm1 11 TALFVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 44555778877666553
No 10
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=2.87 E-value=1.8e+02 Score=17.75 Aligned_cols=10 Identities=20% Similarity=0.610 Sum_probs=0.0
Q ss_pred CCCCCCCCccchh
Q psy9719 3 EPKKFRQPFGVFN 15 (248)
Q Consensus 3 ~P~~f~~~~~~l~ 15 (248)
||++||. +.+
T Consensus 39 ePe~fpg---l~~ 48 (92)
T d1aisa1 39 NPEEFPG---IIC 48 (92)
T ss_dssp CTTTCSS---EEE
T ss_pred CcccCCe---EEE
Done!