RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9719
(248 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 89.3 bits (222), Expect = 1e-20
Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 42/230 (18%)
Query: 1 MKEPKKFRQPFGVFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTW 60
MK P KF+ V I + +L+ + GL GY+ +GN+ + +I LN
Sbjct: 219 MKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLN------------- 265
Query: 61 PTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVVFFTYPLQNFVPL 120
LL L + +YPLQ F
Sbjct: 266 -----------------LPKSDWLIDI------------ANLLLVLHLLLSYPLQAFPIR 296
Query: 121 ELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASL 180
+++ ++ K ++ V R +V+IT+ A+ +P L +SL GA A L
Sbjct: 297 QIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPL 356
Query: 181 GIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLM 230
I P H+ + + ++ L D+ I GL +M G ++
Sbjct: 357 TFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 33.0 bits (76), Expect = 0.13
Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 50/219 (22%)
Query: 13 VFNIGIFLTAMLFAITGLCGYMKYGNDAQSSITLNIASDQKRKTYCTWPTFVHFEYSTGL 72
IG + +L+ + G + +G+ +I
Sbjct: 230 AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAA------------------------- 264
Query: 73 CGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALVV---FFTYPLQNFVPLELLWVNYIK 129
K N + S + + L+ + + + F L F +
Sbjct: 265 ----KEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLF--------EGLA 312
Query: 130 QHMIQYSERKKLIVEYVFRELIVLI-----TWAFAMVIPHLDLLISLFGAFCLASLGIIF 184
+ + + + L LI W FA+ + + LI+ GA + +L I
Sbjct: 313 DLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIK 372
Query: 185 PATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVS 223
P + + + G F + ++ FG+ V++S
Sbjct: 373 PRKLIYKLPALKVYGGNF-----LLLLLVLLFGILVILS 406
>gnl|CDD|217905 pfam04114, Gaa1, Gaa1-like, GPI transamidase component. GPI
(glycosyl phosphatidyl inositol) transamidase is a
multi-protein complex. Gpi16, Gpi8 and Gaa1 for a
sub-complex of the GPI transamidase. GPI transamidase
that adds glycosylphosphatidylinositols (GPIs) to newly
synthesised proteins.
Length = 498
Score = 31.4 bits (71), Expect = 0.45
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 160 MVIPHLDLLISLFGAFCLASL-----GIIFPA----TIHILVLRHERIGFGFLNWVLFKD 210
+ L IS F L L I F + + +L L G N+ +
Sbjct: 311 IPAYLLLSTISGASCFVLLILSQKFHIIEFLSARLKNVALLYLSLVSTGLLLPNFAMLLL 370
Query: 211 IFLIAFGLFVMVSGTVISLMDIFTAI 236
I L+AF L ++V + + TA
Sbjct: 371 IGLLAFPLTLVVIILLNFSLGFVTAQ 396
>gnl|CDD|216801 pfam01943, Polysacc_synt, Polysaccharide biosynthesis protein.
Members of this family are integral membrane proteins.
Many members of the family are implicated in production
of polysaccharide. The family includes RfbX part of the
O antigen biosynthesis operon. The family includes SpoVB
from Bacillus subtilis, which is involved in spore
cortex biosynthesis.
Length = 272
Score = 31.1 bits (71), Expect = 0.50
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 112 YPLQNFVPLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISL 171
+ L L V+ + Q E+ K I + E + + F V LDLL ++
Sbjct: 110 LLILALAILLLPGVSQFFSWLFQGLEKMKYIAISMIIEKLGSLILVFIAVFLGLDLLAAV 169
Query: 172 FGAFCLASLGIIFPATIHILVLRHE-RIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLM 230
+ +G I I + VLR + F F + LFK++ F + +S ISL
Sbjct: 170 LILLIASLIGGI----IALAVLRKKFLPRFVFFSLKLFKELLR--FSWPLFLSSLAISLY 223
Query: 231 DIFTAI 236
+
Sbjct: 224 TYIDTV 229
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional.
Length = 473
Score = 30.5 bits (69), Expect = 0.84
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 119 PLELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLA 178
PL +W I H + K + + + R +V+ W A++ P + S GA ++
Sbjct: 332 PLYFVWEKAIGVH-----DTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVS 386
Query: 179 SLGIIFPATIHILVLR 194
I P+ H+L R
Sbjct: 387 FTVYIIPSLAHMLTYR 402
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 29.8 bits (67), Expect = 1.2
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 36/183 (19%)
Query: 16 IGIFLTAMLFAITGLCGYMKYGNDA------QSSITLNIASDQKRKTYCTWPTFVHFEYS 69
+G+F+ A +F IT YM N + S+I + + +V
Sbjct: 262 LGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCF----------TMYV----L 307
Query: 70 TGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYALV-VFFTYPLQNFVPLELLWVNYI 128
T GYM +G + S+ L + A +V + LV +F +Y L L+
Sbjct: 308 TAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALY---- 363
Query: 129 KQHMIQYSERKKLIVEYVFRELIVLITWAFAMV-----IPHLDLLISLFGAFCLASLGII 183
+I + RK ++ I ++T + M+ IP ++ ++ G+ LG I
Sbjct: 364 --DVIGWDARKVAF----WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFI 417
Query: 184 FPA 186
PA
Sbjct: 418 LPA 420
>gnl|CDD|226638 COG4168, SapB, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 321
Score = 28.9 bits (65), Expect = 2.5
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 121 ELLWVNYIKQHMIQYSERKKLIVEYVFRELIVLITWAFAMVIPHLDLLISLFGAFCLASL 180
E+L NYIK + R ++ +V R A +IP L L S +
Sbjct: 208 EVLNQNYIKAAATRGLSRFTILRRHVLRN-------ALPPLIPQLGLQFSTMLTLAM--- 257
Query: 181 GIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMVSGTVISLMDIFTAI 236
I V IG +N + +D I+ G V+V G+++ ++++ + I
Sbjct: 258 -------ITESVFGWPGIGRWLINAIRQQDYASISAG--VIVIGSLVIIVNVLSDI 304
>gnl|CDD|184367 PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional.
Length = 151
Score = 27.7 bits (62), Expect = 4.0
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 73 CGYMKYGNDAQSSITLNIASDQKLAQ-VVKLLYALVVFFTYP 113
C +YGN Q+S A QKLA V+ L L YP
Sbjct: 17 CATSQYGNFVQAS----AADQQKLATDAVQQLATL-----YP 49
>gnl|CDD|235767 PRK06277, PRK06277, hydrogenase subunit F; Validated.
Length = 478
Score = 27.7 bits (62), Expect = 7.5
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 163 PHLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKDIFLIAFGLFVMV 222
P L+ F F L +L ++ I L F VL IA + MV
Sbjct: 231 PFGSALLQTFSKFVLVALMLV------IFKLFGGLSYFPSAQGVL------IALSVLAMV 278
Query: 223 SGTVISLM 230
G V++L+
Sbjct: 279 FGVVMALL 286
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.144 0.446
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,843,854
Number of extensions: 1252704
Number of successful extensions: 1916
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1894
Number of HSP's successfully gapped: 101
Length of query: 248
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 154
Effective length of database: 6,768,326
Effective search space: 1042322204
Effective search space used: 1042322204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.1 bits)