RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9719
(248 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 37/210 (17%), Positives = 68/210 (32%), Gaps = 52/210 (24%)
Query: 46 LNIASDQKRKTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLYA 105
L+I ++ R TW + + D ++I + + + A+ K+
Sbjct: 330 LSIIAESIRDGLATW------DN------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 106 LVVFFTYPLQNFVP---LELLWVNYIK---QHMIQYSERKKLIVEYVFRELIVLITWAFA 159
L VF P +P L L+W + IK ++ + L+ + I
Sbjct: 378 LSVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-------- 426
Query: 160 MVIP--HLDLLISLFGAFCLASLGIIFPATIHILVLRHERIGFGFLNWVLFKD-----IF 212
IP +L+L + L +H ++ H I F + L +
Sbjct: 427 -SIPSIYLELKVKLENE-----------YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 213 L-IAFGLFVMVSGTVISLMDIFTAIQEDFH 241
I L + M +F + DF
Sbjct: 475 SHIGHHLKNIEHP---ERMTLFRMVFLDFR 501
Score = 32.9 bits (74), Expect = 0.092
Identities = 35/263 (13%), Positives = 68/263 (25%), Gaps = 86/263 (32%)
Query: 8 RQPFGVF--NIGIFLT--AMLFAITGLCGYMKY----GNDAQSSITLNIASDQKR----- 54
+ F +F N+ + +L + L + +D S+I L I S Q
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 55 --KTY----------CTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKL 102
K Y + F S C K L +++ +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLS---C---K---------ILLTTRFKQVTDFLSA 283
Query: 103 LYALVVFFTYPLQNFVP---LELL--WVNYIKQHMIQYSERKKLIVEYVFRELIVLITWA 157
+ + P LL +++ Q L ++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ---------DL------PREVLTT--- 325
Query: 158 FAMVIPHLDLLISLFGAFCLASLGIIFPATI----HILVLRHERI---GFGFLNWVLFKD 210
P +S+ AT H+ + I L ++
Sbjct: 326 ----NP---RRLSIIAESI-----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 211 IFLIAFGLF---VMVSGTVISLM 230
+F +F + ++SL+
Sbjct: 374 MFD-RLSVFPPSAHIPTILLSLI 395
Score = 31.7 bits (71), Expect = 0.26
Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 61/219 (27%)
Query: 3 EPKKFRQPF---GVFNIGIFLTAMLFAI--------------TGLCGY---MKYGNDAQS 42
EP ++R+ F VF + +L ++ L Y K ++
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 43 SI---------------TLN---IASDQKRKTYCTWPTFVHFE--YSTGLCGY-MKYGND 81
SI L+ + KT+ + + Y G+ +K
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 82 AQ-----SSITLNIA-SDQKLAQVVKLLYALVVFFTYPLQNFVPLELLWVNYIKQHMIQY 135
+ + L+ +QK+ A L L+ + YI + +Y
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNAS----GSILNTLQQLKF-YKPYICDNDPKY 541
Query: 136 SERKKLIVEYVFR-ELIVLITWAFAMVIPHLDLL-ISLF 172
I++++ + E ++ + + DLL I+L
Sbjct: 542 ERLVNAILDFLPKIEENLICS-------KYTDLLRIALM 573
Score = 27.5 bits (60), Expect = 5.0
Identities = 37/221 (16%), Positives = 67/221 (30%), Gaps = 77/221 (34%)
Query: 55 KTYCTWPTFVHFEYSTGLCGYMKYGNDAQSSITLNIASDQKLAQVVKLLY---------- 104
KT P+ + Y + ND Q N++ Q ++ + L
Sbjct: 99 KTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 105 -----------ALVVFFTYPLQNFVPLELLWVNYIKQH-------MIQ------------ 134
AL V +Y +Q + ++ W+N + M+Q
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 135 ---YSERKKLIVEYVFRELIVLITWAFAMVIPHLD-LLI-------SLFGAF---C--L- 177
+S KL + + EL L+ P+ + LL+ + AF C L
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSK-----PYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 178 ----ASLG-IIFPATIHILVLRHERIGFG-------FLNWV 206
+ + AT + L H + L ++
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.033
Identities = 60/325 (18%), Positives = 99/325 (30%), Gaps = 124/325 (38%)
Query: 17 GIFLTAML-FAITG-------------LCGYMKYGNDAQSSITLNIA-SDQKRKTYCTWP 61
I + + + +T L G + +++ IA +D +W
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA--IAETD-------SWE 290
Query: 62 TF-------VHFEYSTGLCGYMKYGNDA------QSSIT---------LNIASDQKLAQV 99
+F + + G+ Y Y N + + S+ L+I S+ QV
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQV 349
Query: 100 VKLLYAL--------VVFFTYPLQN----FV----PLELLWVNY----------IKQHMI 133
+ V + L N V P L +N + Q I
Sbjct: 350 QDYVNKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 134 QYSERKKLIVEYVFRELIV-------LITWAFAMVIPHL----------DLLISLFGAFC 176
+SER KL F L V L+ A ++ L D+ I ++ F
Sbjct: 408 PFSER-KLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 177 ---LASL-GIIFPATIH-ILVLRHERIGFGFLNW---VLFKDIFLIAFG------LFVMV 222
L L G I + I+ L + W FK ++ FG L V+
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLP--------VKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 223 S----GT---VISLMDIFTAIQEDF 240
GT VI + +D+
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDDDY 541
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.144 0.446
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,730,426
Number of extensions: 212435
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 8
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.4 bits)