BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9724
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 68/105 (64%)
Query: 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQL 63
+ SV+RLDY+KGL R A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++
Sbjct: 258 IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENE 317
Query: 64 VGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
GRING++ W+P+ Y+ + L +R + V LVTPLRD
Sbjct: 318 AGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRD 362
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 68/105 (64%)
Query: 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQL 63
+ SV+RLDY+KGL R A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++
Sbjct: 257 IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENE 316
Query: 64 VGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
GRING++ W+P+ Y+ + L +R + V LVTPLRD
Sbjct: 317 AGRINGKYGQLGWTPLYYLNQHFDRKLLXKIFRYSDVGLVTPLRD 361
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 68/105 (64%)
Query: 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQL 63
+ SV+RLDY+KGL R A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++
Sbjct: 258 IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENE 317
Query: 64 VGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
GRING++ W+P+ Y+ + L +R + V LVTPLRD
Sbjct: 318 AGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRD 362
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 43 AVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVAL 102
AV S + + E+D + ++ T P YG +S +AS + A AL
Sbjct: 170 AVDSSNQRAPFSSVGPELDVMAPGVSICSTLPGGK-----YGALSGTSMASPHVAGAAAL 224
Query: 103 VTPLRDEWSNSFSRS 117
+ W+N+ RS
Sbjct: 225 ILSKHPNWTNTQVRS 239
>pdb|3H6Z|A Chain A, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
pdb|3H6Z|B Chain B, Crystal Structure Of The Four Mbt Repeats Of Drosophila
Melanogaster Sfmbt In Complex With Peptide Rhr (Me)k Vlr
Length = 447
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 44 VPSRTDVKEYQDLKEEMDQLVGRINGRFTTPN 75
+P RT +Y+D K D LVGR++G T P+
Sbjct: 115 IPPRTIEHKYKDWK---DFLVGRLSGARTLPS 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,256,011
Number of Sequences: 62578
Number of extensions: 167341
Number of successful extensions: 555
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 8
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)