Query psy9724
Match_columns 140
No_of_seqs 110 out of 1048
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 17:59:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10117 trehalose-6-phosphate 100.0 2.7E-42 5.8E-47 297.1 15.0 128 1-128 255-391 (474)
2 TIGR02398 gluc_glyc_Psyn gluco 100.0 5E-40 1.1E-44 284.1 15.4 132 1-132 285-423 (487)
3 PLN02205 alpha,alpha-trehalose 100.0 6.1E-40 1.3E-44 298.4 15.4 126 1-126 339-469 (854)
4 COG0380 OtsA Trehalose-6-phosp 100.0 6.1E-39 1.3E-43 276.3 13.0 127 1-127 282-416 (486)
5 PF00982 Glyco_transf_20: Glyc 100.0 3.8E-39 8.2E-44 278.0 11.5 129 2-130 277-413 (474)
6 PLN03064 alpha,alpha-trehalose 100.0 2.2E-37 4.8E-42 282.7 14.7 129 1-130 363-499 (934)
7 TIGR02400 trehalose_OtsA alpha 100.0 1.6E-32 3.5E-37 235.7 15.0 129 1-131 259-396 (456)
8 PLN03063 alpha,alpha-trehalose 100.0 2.8E-32 6.2E-37 247.1 15.7 130 1-132 279-417 (797)
9 PRK14501 putative bifunctional 100.0 4E-31 8.6E-36 237.1 15.6 130 1-130 265-402 (726)
10 cd03788 GT1_TPS Trehalose-6-Ph 100.0 1.5E-28 3.3E-33 210.6 15.4 129 1-131 264-401 (460)
11 KOG1050|consensus 99.9 3.3E-25 7.2E-30 199.0 10.3 125 1-125 276-407 (732)
12 PRK15484 lipopolysaccharide 1, 99.6 2.4E-15 5.3E-20 125.3 12.8 116 1-131 193-314 (380)
13 cd03792 GT1_Trehalose_phosphor 99.6 8.3E-15 1.8E-19 120.3 12.1 115 1-131 190-310 (372)
14 TIGR03449 mycothiol_MshA UDP-N 99.6 6.5E-14 1.4E-18 115.7 13.5 115 1-130 219-338 (405)
15 TIGR03088 stp2 sugar transfera 99.5 4.3E-14 9.2E-19 115.5 11.1 109 2-130 195-308 (374)
16 cd03796 GT1_PIG-A_like This fa 99.5 5.2E-14 1.1E-18 117.1 11.7 108 1-131 193-306 (398)
17 PLN02949 transferase, transfer 99.5 8.5E-14 1.8E-18 120.1 12.8 116 2-130 269-390 (463)
18 cd03806 GT1_ALG11_like This fa 99.5 1.4E-13 3E-18 116.6 13.5 117 2-130 238-360 (419)
19 PHA01633 putative glycosyl tra 99.5 1.6E-13 3.6E-18 114.4 12.3 105 2-131 149-260 (335)
20 PRK15427 colanic acid biosynth 99.5 1.8E-13 4E-18 115.4 12.6 106 3-130 224-340 (406)
21 cd03818 GT1_ExpC_like This fam 99.5 1.2E-13 2.6E-18 114.6 11.1 116 2-130 212-336 (396)
22 TIGR02470 sucr_synth sucrose s 99.5 1.8E-13 3.9E-18 124.5 11.7 117 1-130 550-679 (784)
23 cd03812 GT1_CapH_like This fam 99.5 1.5E-13 3.3E-18 110.0 9.9 107 1-131 192-303 (358)
24 cd03805 GT1_ALG2_like This fam 99.5 4.7E-13 1E-17 109.4 12.9 115 2-130 212-335 (392)
25 PLN00142 sucrose synthase 99.5 2.8E-13 6.1E-18 123.5 12.5 118 1-130 573-702 (815)
26 PRK00654 glgA glycogen synthas 99.5 4.1E-13 8.8E-18 114.9 12.1 106 2-131 283-393 (466)
27 TIGR02149 glgA_Coryne glycogen 99.5 7.8E-13 1.7E-17 108.0 12.5 111 2-131 202-317 (388)
28 cd03821 GT1_Bme6_like This fam 99.5 9E-13 1.9E-17 103.6 11.7 110 2-131 204-318 (375)
29 TIGR02468 sucrsPsyn_pln sucros 99.5 5.1E-13 1.1E-17 124.2 11.5 118 1-130 479-607 (1050)
30 PLN02316 synthase/transferase 99.4 8.1E-13 1.7E-17 122.9 12.5 111 2-131 841-956 (1036)
31 cd03800 GT1_Sucrose_synthase T 99.4 1.7E-12 3.6E-17 105.3 12.9 115 1-131 220-339 (398)
32 TIGR02095 glgA glycogen/starch 99.4 9.3E-13 2E-17 112.4 11.6 106 2-131 292-402 (473)
33 PRK14098 glycogen synthase; Pr 99.4 9.9E-13 2.1E-17 114.0 11.7 105 2-130 308-417 (489)
34 TIGR02472 sucr_P_syn_N sucrose 99.4 9.6E-13 2.1E-17 111.6 11.2 115 2-130 249-376 (439)
35 cd04946 GT1_AmsK_like This fam 99.4 2E-12 4.4E-17 108.8 12.9 110 2-131 231-347 (407)
36 PRK15179 Vi polysaccharide bio 99.4 1E-12 2.3E-17 118.4 10.5 105 2-130 518-627 (694)
37 cd03813 GT1_like_3 This family 99.4 1.1E-12 2.4E-17 112.4 10.2 108 2-130 294-406 (475)
38 TIGR02918 accessory Sec system 99.4 1.7E-12 3.8E-17 112.9 11.4 104 2-130 320-429 (500)
39 PLN02939 transferase, transfer 99.4 2.1E-12 4.5E-17 119.2 12.2 109 2-131 780-893 (977)
40 cd05844 GT1_like_7 Glycosyltra 99.4 3.9E-12 8.5E-17 102.5 12.2 107 2-130 189-306 (367)
41 cd03791 GT1_Glycogen_synthase_ 99.4 6.9E-12 1.5E-16 106.3 11.4 105 2-130 297-406 (476)
42 PRK15490 Vi polysaccharide bio 99.4 5.4E-12 1.2E-16 111.4 10.7 106 2-131 399-509 (578)
43 PLN02275 transferase, transfer 99.3 1.1E-11 2.3E-16 103.0 10.9 107 2-130 214-345 (371)
44 PF00534 Glycos_transf_1: Glyc 99.3 4.5E-12 9.8E-17 93.1 7.8 109 1-131 15-129 (172)
45 PRK14099 glycogen synthase; Pr 99.3 1.2E-11 2.6E-16 107.1 11.7 105 2-131 296-406 (485)
46 PLN02846 digalactosyldiacylgly 99.3 7.7E-12 1.7E-16 108.3 10.4 102 2-129 229-335 (462)
47 PLN02871 UDP-sulfoquinovose:DA 99.3 8.7E-12 1.9E-16 106.3 10.6 100 2-131 264-368 (465)
48 cd03819 GT1_WavL_like This fam 99.3 2.2E-11 4.8E-16 97.3 11.6 108 2-130 186-300 (355)
49 cd04951 GT1_WbdM_like This fam 99.3 1.2E-11 2.6E-16 98.7 9.9 105 2-131 189-299 (360)
50 PRK10307 putative glycosyl tra 99.3 1.8E-11 3.9E-16 102.0 11.1 105 2-130 230-343 (412)
51 cd03816 GT1_ALG1_like This fam 99.3 4.4E-11 9.5E-16 100.9 12.4 111 2-130 233-353 (415)
52 PHA01630 putative group 1 glyc 99.3 1.8E-11 3.9E-16 101.4 9.8 98 3-131 144-246 (331)
53 cd03820 GT1_amsD_like This fam 99.3 2.7E-11 5.8E-16 94.0 10.0 106 1-130 178-288 (348)
54 cd03817 GT1_UGDG_like This fam 99.3 5.1E-11 1.1E-15 93.8 11.4 108 2-131 203-315 (374)
55 cd03804 GT1_wbaZ_like This fam 99.3 3.2E-11 6.9E-16 97.8 10.3 97 2-131 196-297 (351)
56 cd03809 GT1_mtfB_like This fam 99.3 4.5E-11 9.7E-16 94.7 10.7 109 2-131 196-309 (365)
57 cd03822 GT1_ecORF704_like This 99.3 8.9E-11 1.9E-15 93.0 12.2 111 1-128 185-303 (366)
58 cd03799 GT1_amsK_like This is 99.3 7.4E-11 1.6E-15 93.9 11.4 108 2-131 180-298 (355)
59 cd04955 GT1_like_6 This family 99.3 5E-11 1.1E-15 95.4 10.5 105 2-130 194-304 (363)
60 PLN02501 digalactosyldiacylgly 99.2 3.3E-11 7.2E-16 108.7 9.9 102 3-130 548-654 (794)
61 cd04949 GT1_gtfA_like This fam 99.2 5.4E-11 1.2E-15 97.0 9.7 105 2-130 205-315 (372)
62 PRK10125 putative glycosyl tra 99.2 4.9E-11 1.1E-15 101.0 9.7 94 2-130 242-342 (405)
63 cd03798 GT1_wlbH_like This fam 99.2 1.3E-10 2.9E-15 90.6 11.3 109 1-131 202-315 (377)
64 cd04962 GT1_like_5 This family 99.2 1.2E-10 2.6E-15 94.0 10.9 104 1-130 197-306 (371)
65 cd03811 GT1_WabH_like This fam 99.2 9.1E-11 2E-15 91.0 9.5 106 2-131 190-300 (353)
66 cd03807 GT1_WbnK_like This fam 99.2 1.3E-10 2.8E-15 91.0 10.3 106 2-131 194-305 (365)
67 cd03802 GT1_AviGT4_like This f 99.2 1.3E-10 2.9E-15 92.1 10.2 104 1-130 171-280 (335)
68 cd03795 GT1_like_4 This family 99.2 2E-10 4.4E-15 91.5 11.3 104 2-131 192-302 (357)
69 cd03801 GT1_YqgM_like This fam 99.2 3.3E-10 7.2E-15 87.8 11.4 108 2-131 200-312 (374)
70 PRK09922 UDP-D-galactose:(gluc 99.2 2.4E-10 5.2E-15 93.9 10.0 104 2-130 181-294 (359)
71 cd03793 GT1_Glycogen_synthase_ 99.2 4.3E-10 9.3E-15 99.7 12.1 127 1-129 297-509 (590)
72 cd03823 GT1_ExpE7_like This fa 99.1 5.4E-10 1.2E-14 87.9 11.0 104 1-131 191-300 (359)
73 cd03808 GT1_cap1E_like This fa 99.1 4.9E-10 1.1E-14 87.3 10.4 106 2-130 189-299 (359)
74 KOG1111|consensus 99.1 1.9E-10 4E-15 96.9 8.2 108 2-131 196-308 (426)
75 cd03814 GT1_like_2 This family 99.1 5.9E-10 1.3E-14 88.0 10.6 101 2-131 198-303 (364)
76 cd03794 GT1_wbuB_like This fam 99.1 2.2E-09 4.7E-14 84.5 11.1 107 1-131 220-336 (394)
77 COG0438 RfaG Glycosyltransfera 99.0 1.3E-08 2.7E-13 77.4 11.7 109 2-131 200-313 (381)
78 TIGR03087 stp1 sugar transfera 99.0 4E-09 8.6E-14 87.8 9.6 97 2-127 225-331 (397)
79 cd03825 GT1_wcfI_like This fam 98.9 1.1E-08 2.4E-13 81.7 10.4 101 2-131 192-301 (365)
80 COG0297 GlgA Glycogen synthase 98.9 1.6E-08 3.4E-13 88.4 11.0 108 2-131 295-405 (487)
81 cd01635 Glycosyltransferase_GT 98.9 2.1E-08 4.6E-13 74.2 9.9 105 6-131 109-218 (229)
82 PRK05749 3-deoxy-D-manno-octul 98.7 2.4E-07 5.2E-12 77.9 11.4 106 2-126 234-352 (425)
83 KOG0853|consensus 98.5 1.1E-06 2.4E-11 76.8 11.7 121 2-130 274-401 (495)
84 PF13692 Glyco_trans_1_4: Glyc 98.3 5.4E-06 1.2E-10 58.4 7.6 94 2-126 3-103 (135)
85 cd04950 GT1_like_1 Glycosyltra 98.2 8.2E-06 1.8E-10 67.8 8.9 102 1-132 205-316 (373)
86 PLN02605 monogalactosyldiacylg 98.0 5.9E-05 1.3E-09 62.9 9.8 97 1-126 206-310 (382)
87 TIGR03713 acc_sec_asp1 accesso 97.8 0.0002 4.4E-09 63.1 10.9 108 2-122 322-455 (519)
88 cd03786 GT1_UDP-GlcNAc_2-Epime 97.6 0.00052 1.1E-08 55.8 9.6 101 2-127 200-305 (363)
89 TIGR00236 wecB UDP-N-acetylglu 97.6 0.00071 1.5E-08 55.7 10.3 103 3-130 200-306 (365)
90 PRK00025 lpxB lipid-A-disaccha 97.4 0.00028 6.1E-09 58.0 5.8 88 8-124 195-286 (380)
91 PRK13608 diacylglycerol glucos 97.4 0.00095 2.1E-08 56.1 8.6 95 2-126 204-301 (391)
92 PRK13609 diacylglycerol glucos 97.3 0.0021 4.6E-08 53.0 9.3 97 3-129 205-305 (380)
93 TIGR01133 murG undecaprenyldip 97.2 0.0012 2.6E-08 53.2 7.3 100 2-131 180-283 (348)
94 TIGR02094 more_P_ylases alpha- 97.0 0.011 2.3E-07 53.3 11.6 112 3-124 391-509 (601)
95 cd03785 GT1_MurG MurG is an N- 96.9 0.005 1.1E-07 49.7 7.9 97 2-128 182-282 (350)
96 PRK00726 murG undecaprenyldiph 96.9 0.0052 1.1E-07 50.2 7.7 96 2-129 184-283 (357)
97 TIGR00215 lpxB lipid-A-disacch 96.6 0.0091 2E-07 50.3 7.8 92 6-125 198-293 (385)
98 KOG1387|consensus 96.6 0.021 4.7E-07 48.8 9.8 116 2-130 270-392 (465)
99 PRK09814 beta-1,6-galactofuran 96.4 0.011 2.4E-07 48.5 6.8 49 78-130 208-272 (333)
100 PF05693 Glycogen_syn: Glycoge 96.3 0.012 2.6E-07 53.1 6.9 38 91-128 463-503 (633)
101 TIGR02919 accessory Sec system 96.0 0.025 5.4E-07 49.1 7.2 85 17-125 291-378 (438)
102 cd04299 GT1_Glycogen_Phosphory 95.1 0.31 6.7E-06 45.4 11.2 100 3-112 480-583 (778)
103 COG1519 KdtA 3-deoxy-D-manno-o 94.9 0.18 3.8E-06 43.8 8.5 90 18-124 246-348 (419)
104 PF06258 Mito_fiss_Elm1: Mitoc 94.7 0.22 4.7E-06 41.4 8.3 106 20-128 131-259 (311)
105 COG0816 Predicted endonuclease 94.5 0.36 7.8E-06 36.0 8.2 81 9-99 31-111 (141)
106 TIGR03590 PseG pseudaminic aci 93.6 1.1 2.3E-05 36.2 10.2 94 1-126 171-268 (279)
107 PF13844 Glyco_transf_41: Glyc 93.3 0.29 6.2E-06 43.1 6.7 95 13-125 295-391 (468)
108 PF09949 DUF2183: Uncharacteri 87.8 2 4.4E-05 30.0 5.6 36 17-56 49-84 (100)
109 PF07429 Glyco_transf_56: 4-al 87.5 7.3 0.00016 33.3 9.7 102 8-125 192-296 (360)
110 PRK02797 4-alpha-L-fucosyltran 85.6 8.8 0.00019 32.4 9.1 102 8-125 153-257 (322)
111 PF04577 DUF563: Protein of un 80.8 16 0.00034 27.2 8.2 48 75-124 132-179 (206)
112 TIGR00250 RNAse_H_YqgF RNAse H 80.1 15 0.00033 26.5 7.7 70 18-97 35-104 (130)
113 PF13524 Glyco_trans_1_2: Glyc 76.6 1.1 2.4E-05 29.5 0.7 30 100-131 1-35 (92)
114 TIGR01513 NAPRTase_put putativ 75.7 49 0.0011 29.0 10.8 101 4-123 220-335 (443)
115 cd03789 GT1_LPS_heptosyltransf 74.5 19 0.00041 28.4 7.4 44 80-125 181-224 (279)
116 PF04230 PS_pyruv_trans: Polys 74.2 20 0.00043 26.9 7.2 46 76-123 236-281 (286)
117 TIGR02201 heptsyl_trn_III lipo 73.4 12 0.00026 30.5 6.2 43 79-124 242-285 (344)
118 PRK00109 Holliday junction res 72.6 31 0.00068 25.2 7.6 71 18-98 41-111 (138)
119 COG3914 Spy Predicted O-linked 69.9 35 0.00075 31.3 8.5 95 12-122 439-535 (620)
120 KOG3742|consensus 68.6 2.9 6.3E-05 37.3 1.5 37 93-129 496-535 (692)
121 cd00115 LMWPc Substituted upda 68.2 14 0.0003 26.5 4.9 46 22-67 87-139 (141)
122 PF13438 DUF4113: Domain of un 67.5 3.4 7.4E-05 25.4 1.3 17 58-74 2-18 (52)
123 COG3660 Predicted nucleoside-d 66.5 44 0.00095 28.0 7.9 103 17-126 143-273 (329)
124 TIGR00520 asnASE_II L-asparagi 64.9 36 0.00078 28.8 7.4 69 23-96 56-126 (349)
125 PF10929 DUF2811: Protein of u 64.6 7.2 0.00016 24.8 2.4 16 18-33 9-24 (57)
126 COG2908 Uncharacterized protei 63.4 79 0.0017 25.6 9.0 98 9-121 5-108 (237)
127 cd03129 GAT1_Peptidase_E_like 61.7 54 0.0012 25.0 7.4 95 21-129 16-125 (210)
128 TIGR03568 NeuC_NnaA UDP-N-acet 59.6 1E+02 0.0022 25.7 10.1 42 80-123 264-305 (365)
129 PRK09458 pspB phage shock prot 59.0 11 0.00024 25.3 2.6 23 14-36 52-75 (75)
130 PRK13798 putative OHCU decarbo 58.8 9.7 0.00021 28.9 2.7 67 24-95 65-132 (166)
131 PRK10422 lipopolysaccharide co 57.9 1E+02 0.0022 25.3 8.8 44 79-125 244-288 (352)
132 PF10307 DUF2410: Hypothetical 57.7 70 0.0015 25.1 7.4 59 2-69 135-196 (197)
133 KOG2941|consensus 57.3 1.2E+02 0.0027 26.4 9.2 48 75-125 316-372 (444)
134 COG2961 ComJ Protein involved 56.8 62 0.0013 26.8 7.1 68 44-123 163-243 (279)
135 PRK15423 hypoxanthine phosphor 56.5 27 0.00059 26.6 4.8 58 54-111 12-75 (178)
136 cd01570 NAPRTase_A Nicotinate 56.3 1.2E+02 0.0026 25.3 9.0 77 4-97 220-298 (327)
137 COG0859 RfaF ADP-heptose:LPS h 56.2 1.1E+02 0.0024 25.1 8.8 41 82-125 236-277 (334)
138 PF02684 LpxB: Lipid-A-disacch 55.2 36 0.00078 29.1 5.8 67 16-105 202-268 (373)
139 COG1168 MalY Bifunctional PLP- 55.0 51 0.0011 28.6 6.6 88 20-114 147-238 (388)
140 PRK14986 glycogen phosphorylas 54.9 1.5E+02 0.0033 28.3 10.1 117 4-128 546-667 (815)
141 PF13174 TPR_6: Tetratricopept 54.5 18 0.00039 18.5 2.6 19 14-32 14-32 (33)
142 smart00226 LMWPc Low molecular 53.8 35 0.00076 24.1 4.8 46 22-67 82-137 (140)
143 TIGR03492 conserved hypothetic 53.0 1.4E+02 0.0031 25.2 9.5 37 88-126 287-323 (396)
144 COG0058 GlgP Glucan phosphoryl 52.1 1.3E+02 0.0028 28.4 9.2 114 3-130 489-604 (750)
145 KOG4626|consensus 52.0 87 0.0019 29.5 7.9 85 17-123 773-863 (966)
146 PF06667 PspB: Phage shock pro 51.5 17 0.00036 24.3 2.6 22 15-36 53-75 (75)
147 cd01401 PncB_like Nicotinate p 51.3 91 0.002 26.8 7.6 44 79-123 306-368 (377)
148 PF03652 UPF0081: Uncharacteri 50.6 17 0.00036 26.5 2.7 70 17-96 37-107 (135)
149 cd04300 GT1_Glycogen_Phosphory 48.5 1.8E+02 0.004 27.6 9.6 102 3-107 532-638 (797)
150 PRK12484 nicotinate phosphorib 48.4 1.9E+02 0.0041 25.4 10.3 101 4-123 223-337 (443)
151 COG0707 MurG UDP-N-acetylgluco 47.4 93 0.002 26.3 7.1 27 91-122 246-276 (357)
152 PF07693 KAP_NTPase: KAP famil 46.1 54 0.0012 26.2 5.3 40 1-45 172-213 (325)
153 COG2433 Uncharacterized conser 45.9 1.2E+02 0.0026 28.1 7.7 41 21-72 67-107 (652)
154 PLN02757 sirohydrochlorine fer 45.5 97 0.0021 23.0 6.2 43 4-46 16-59 (154)
155 TIGR00603 rad25 DNA repair hel 45.4 1.3E+02 0.0029 28.2 8.3 76 17-115 479-561 (732)
156 PRK10945 gene expression modul 45.3 35 0.00076 22.7 3.3 28 57-99 21-48 (72)
157 COG0365 Acs Acyl-coenzyme A sy 44.5 1.2E+02 0.0026 27.3 7.6 106 22-131 14-125 (528)
158 COG3340 PepE Peptidase E [Amin 44.2 1.7E+02 0.0036 23.6 9.8 84 34-129 32-129 (224)
159 TIGR03164 UHCUDC OHCU decarbox 44.1 17 0.00037 27.3 1.9 70 25-95 54-127 (157)
160 PRK11391 etp phosphotyrosine-p 43.9 58 0.0013 23.7 4.7 45 23-67 87-138 (144)
161 PRK14865 rnpA ribonuclease P; 43.5 82 0.0018 22.1 5.3 34 36-72 83-116 (116)
162 PRK10916 ADP-heptose:LPS hepto 43.0 1.8E+02 0.004 23.7 8.4 39 82-123 246-285 (348)
163 PRK10126 tyrosine phosphatase; 43.0 64 0.0014 23.4 4.8 44 23-66 87-137 (147)
164 PRK05690 molybdopterin biosynt 42.8 34 0.00074 27.2 3.6 56 77-132 102-161 (245)
165 PF00343 Phosphorylase: Carboh 42.0 3E+02 0.0065 25.9 13.4 118 3-128 446-568 (713)
166 PF08331 DUF1730: Domain of un 41.8 34 0.00074 22.3 2.9 27 51-77 46-73 (78)
167 cd02907 Macro_Af1521_BAL_like 41.6 55 0.0012 24.4 4.4 37 6-42 124-160 (175)
168 TIGR02195 heptsyl_trn_II lipop 39.8 2E+02 0.0043 23.2 8.1 39 82-123 236-275 (334)
169 cd08557 PI-PLCc_bacteria_like 39.7 1.7E+02 0.0038 22.6 7.2 71 14-93 79-149 (271)
170 cd03415 CbiX_CbiC Archaeal sir 39.3 1.4E+02 0.0031 21.4 7.6 81 5-97 4-84 (125)
171 TIGR02356 adenyl_thiF thiazole 38.7 25 0.00054 27.0 2.2 71 59-134 76-152 (202)
172 cd00757 ThiF_MoeB_HesA_family 37.9 46 0.001 25.9 3.6 57 77-133 91-151 (228)
173 PLN02885 nicotinate phosphorib 37.7 3.1E+02 0.0068 24.8 10.8 110 3-123 282-406 (545)
174 PF13528 Glyco_trans_1_3: Glyc 37.6 1.1E+02 0.0024 24.1 5.8 38 86-126 239-278 (318)
175 PRK15005 universal stress prot 37.6 1.3E+02 0.0029 20.6 12.0 26 85-110 93-120 (144)
176 COG0634 Hpt Hypoxanthine-guani 37.2 1.2E+02 0.0026 23.5 5.6 54 54-111 15-76 (178)
177 PF14639 YqgF: Holliday-juncti 36.8 99 0.0021 22.9 5.1 67 18-99 50-116 (150)
178 TIGR02355 moeB molybdopterin s 36.5 47 0.001 26.3 3.5 66 61-132 84-153 (240)
179 PRK01903 rnpA ribonuclease P; 35.9 1.5E+02 0.0033 21.5 5.8 33 37-69 100-132 (133)
180 PRK04914 ATP-dependent helicas 35.9 2.8E+02 0.0062 26.9 9.0 81 16-115 477-565 (956)
181 TIGR03853 matur_matur probable 35.2 77 0.0017 21.3 3.8 36 61-100 21-59 (77)
182 PF04198 Sugar-bind: Putative 34.9 22 0.00047 28.5 1.3 69 33-104 75-151 (255)
183 PRK10391 oriC-binding nucleoid 34.1 54 0.0012 21.7 2.8 28 57-99 16-44 (71)
184 PF10087 DUF2325: Uncharacteri 32.4 51 0.0011 22.1 2.7 67 57-130 12-87 (97)
185 PRK05282 (alpha)-aspartyl dipe 32.2 2.6E+02 0.0056 22.2 9.9 106 3-128 4-123 (233)
186 TIGR01203 HGPRTase hypoxanthin 32.2 1E+02 0.0022 22.9 4.5 21 53-73 5-25 (166)
187 PRK14852 hypothetical protein; 31.7 1.2E+02 0.0025 29.6 5.7 68 59-134 390-465 (989)
188 TIGR03180 UraD_2 OHCU decarbox 31.7 36 0.00078 25.6 2.0 71 24-95 55-127 (158)
189 PF01075 Glyco_transf_9: Glyco 31.6 2.3E+02 0.005 21.5 9.3 43 79-124 165-208 (247)
190 COG1488 PncB Nicotinic acid ph 31.5 2.7E+02 0.0059 24.1 7.5 51 72-123 286-351 (405)
191 PRK11118 putative monooxygenas 31.4 1.3E+02 0.0028 21.2 4.6 33 38-72 3-35 (100)
192 PF11202 PRTase_1: Phosphoribo 31.0 1.9E+02 0.0042 23.7 6.1 62 13-85 127-188 (257)
193 PRK05321 nicotinate phosphorib 31.0 3E+02 0.0066 23.8 7.7 52 79-131 309-377 (400)
194 PRK03103 DNA polymerase IV; Re 31.0 1.7E+02 0.0037 24.7 6.2 62 12-74 315-383 (409)
195 TIGR02881 spore_V_K stage V sp 30.9 2.6E+02 0.0057 21.9 7.7 42 4-45 108-152 (261)
196 cd01487 E1_ThiF_like E1_ThiF_l 30.8 72 0.0016 23.9 3.5 48 78-127 69-123 (174)
197 PRK01732 rnpA ribonuclease P; 30.5 1.9E+02 0.0041 20.3 5.5 30 38-68 84-113 (114)
198 smart00115 CASc Caspase, inter 30.5 2.7E+02 0.0058 21.9 8.0 101 3-117 12-128 (241)
199 TIGR02976 phageshock_pspB phag 30.4 44 0.00096 22.2 2.0 22 15-36 53-75 (75)
200 PF10678 DUF2492: Protein of u 30.0 1.1E+02 0.0023 20.6 3.9 49 61-112 23-71 (78)
201 KOG1939|consensus 29.5 76 0.0016 30.6 4.0 84 39-138 403-492 (1247)
202 PF05321 HHA: Haemolysin expre 29.4 33 0.00072 21.8 1.2 28 57-99 9-36 (57)
203 PRK00588 rnpA ribonuclease P; 29.4 1.6E+02 0.0035 20.8 5.0 34 39-73 83-116 (118)
204 PRK12475 thiamine/molybdopteri 29.2 1E+02 0.0023 25.7 4.6 52 79-132 98-155 (338)
205 COG4923 Predicted nuclease (RN 28.6 24 0.00052 28.1 0.6 23 15-37 123-145 (245)
206 PRK14851 hypothetical protein; 28.3 1.6E+02 0.0036 27.2 6.0 69 60-136 102-178 (679)
207 PRK09461 ansA cytoplasmic aspa 28.0 3.1E+02 0.0068 22.9 7.2 65 23-96 31-102 (335)
208 PRK04183 glutamyl-tRNA(Gln) am 27.6 2.7E+02 0.0058 24.3 6.9 66 23-96 104-173 (419)
209 cd03784 GT1_Gtf_like This fami 27.3 2.3E+02 0.0051 23.1 6.3 42 81-128 291-334 (401)
210 PRK14985 maltodextrin phosphor 27.3 3.7E+02 0.008 25.7 8.0 114 7-128 535-653 (798)
211 PF05484 LRV_FeS: LRV protein 27.2 23 0.00051 22.5 0.2 15 21-35 41-55 (57)
212 PRK14470 ribosomal RNA large s 27.2 1.1E+02 0.0025 25.6 4.4 96 15-119 229-330 (336)
213 COG1111 MPH1 ERCC4-like helica 27.1 2.5E+02 0.0053 25.5 6.6 29 78-106 88-116 (542)
214 PF08708 PriCT_1: Primase C te 27.0 1.4E+02 0.0031 18.6 4.0 32 55-97 33-64 (71)
215 TIGR02153 gatD_arch glutamyl-t 26.8 2.6E+02 0.0057 24.2 6.6 68 23-96 91-160 (404)
216 TIGR02193 heptsyl_trn_I lipopo 26.7 3.3E+02 0.0071 21.7 9.4 40 83-125 240-280 (319)
217 COG0263 ProB Glutamate 5-kinas 26.6 2.8E+02 0.0062 23.9 6.7 83 15-110 81-176 (369)
218 PRK09982 universal stress prot 26.6 2.3E+02 0.005 19.8 8.5 103 1-111 4-117 (142)
219 COG4152 ABC-type uncharacteriz 26.5 2.3E+02 0.005 23.7 5.9 89 11-131 130-219 (300)
220 TIGR02093 P_ylase glycogen/sta 26.3 5E+02 0.011 24.8 8.7 113 6-126 532-649 (794)
221 PRK01810 DNA polymerase IV; Va 26.0 3.6E+02 0.0078 22.7 7.3 62 12-74 310-382 (407)
222 PRK05597 molybdopterin biosynt 26.0 62 0.0013 27.2 2.6 56 77-132 98-157 (355)
223 cd04501 SGNH_hydrolase_like_4 25.7 2.2E+02 0.0047 20.4 5.3 35 35-69 60-94 (183)
224 cd00411 Asparaginase Asparagin 25.5 3.3E+02 0.0071 22.6 6.8 65 23-96 31-99 (323)
225 PRK02794 DNA polymerase IV; Pr 25.4 3E+02 0.0065 23.4 6.8 62 12-74 338-408 (419)
226 PTZ00489 glutamate 5-kinase; P 25.3 3.7E+02 0.0079 21.7 9.6 72 18-103 82-167 (264)
227 PRK00411 cdc6 cell division co 25.0 3.9E+02 0.0085 22.0 7.6 42 2-45 139-182 (394)
228 PRK08097 ligB NAD-dependent DN 24.9 2E+02 0.0044 26.1 5.8 99 18-123 32-143 (562)
229 PF14237 DUF4339: Domain of un 24.7 59 0.0013 18.8 1.7 23 83-105 11-33 (45)
230 PRK08328 hypothetical protein; 24.7 85 0.0019 24.6 3.1 56 78-133 99-158 (231)
231 PRK08223 hypothetical protein; 24.6 84 0.0018 26.0 3.1 65 60-132 86-158 (287)
232 cd08590 PI-PLCc_Rv2075c_like C 24.4 2.2E+02 0.0047 23.1 5.5 52 15-78 89-140 (267)
233 PF10673 DUF2487: Protein of u 24.3 2.1E+02 0.0046 21.2 5.0 77 23-111 40-119 (142)
234 TIGR02928 orc1/cdc6 family rep 24.2 3.9E+02 0.0084 21.7 7.1 79 1-97 129-210 (365)
235 COG0426 FpaA Uncharacterized f 24.2 3.1E+02 0.0067 23.8 6.5 79 14-106 228-306 (388)
236 TIGR00661 MJ1255 conserved hyp 23.9 76 0.0016 25.6 2.7 37 89-128 239-277 (321)
237 cd06295 PBP1_CelR Ligand bindi 23.9 3.2E+02 0.007 20.6 7.2 64 53-123 25-92 (275)
238 cd08587 PI-PLCXDc_like Catalyt 23.7 3.7E+02 0.0079 21.6 6.7 29 14-45 92-120 (288)
239 COG0773 MurC UDP-N-acetylmuram 23.6 2.3E+02 0.0051 25.1 5.8 27 7-33 185-211 (459)
240 PTZ00271 hypoxanthine-guanine 23.4 1.6E+02 0.0034 23.2 4.4 59 53-111 30-101 (211)
241 PF10254 Pacs-1: PACS-1 cytoso 23.4 1.1E+02 0.0023 26.8 3.6 88 16-110 88-184 (414)
242 KOG1205|consensus 23.3 1.7E+02 0.0037 24.2 4.7 47 57-106 46-100 (282)
243 KOG4584|consensus 23.3 4E+02 0.0087 22.7 6.8 98 1-112 200-310 (348)
244 PF02350 Epimerase_2: UDP-N-ac 23.2 2.5E+02 0.0054 23.3 5.8 49 79-132 241-291 (346)
245 PF01637 Arch_ATPase: Archaeal 23.1 3E+02 0.0066 20.0 9.8 79 2-97 119-202 (234)
246 cd01828 sialate_O-acetylestera 23.1 2.8E+02 0.0061 19.6 6.8 35 36-70 50-84 (169)
247 cd00114 LIGANc NAD+ dependent 23.0 2E+02 0.0043 23.9 5.0 41 83-123 78-126 (307)
248 TIGR00991 3a0901s02IAP34 GTP-b 22.9 2.9E+02 0.0063 23.2 6.0 25 3-27 121-148 (313)
249 PRK13799 unknown domain/N-carb 22.8 1.1E+02 0.0024 27.6 3.7 71 24-94 63-141 (591)
250 PRK00396 rnpA ribonuclease P; 22.5 3.1E+02 0.0067 19.8 5.9 37 37-74 84-120 (130)
251 PRK07956 ligA NAD-dependent DN 22.3 1.9E+02 0.0042 26.7 5.2 98 19-122 8-132 (665)
252 PF00899 ThiF: ThiF family; I 22.2 2.6E+02 0.0057 19.4 5.0 64 60-129 61-128 (135)
253 cd01483 E1_enzyme_family Super 22.2 78 0.0017 22.3 2.3 54 78-131 70-127 (143)
254 PRK10964 ADP-heptose:LPS hepto 22.0 4.2E+02 0.0091 21.2 8.2 40 83-125 239-279 (322)
255 cd01834 SGNH_hydrolase_like_2 21.7 3E+02 0.0065 19.5 6.8 28 2-29 64-97 (191)
256 PF11287 DUF3088: Protein of u 21.6 1.4E+02 0.003 21.5 3.3 40 21-69 28-67 (112)
257 smart00870 Asparaginase Aspara 21.5 4.7E+02 0.01 21.6 7.5 61 30-96 37-98 (323)
258 PRK11096 ansB L-asparaginase I 21.2 5.1E+02 0.011 21.9 7.6 67 23-97 53-122 (347)
259 PF00501 AMP-binding: AMP-bind 20.8 4.5E+02 0.0098 21.2 7.9 42 23-72 1-42 (417)
260 TIGR03678 het_cyc_patell bacte 20.6 55 0.0012 18.5 0.9 21 116-136 9-29 (34)
261 PF13401 AAA_22: AAA domain; P 20.5 2.5E+02 0.0054 18.8 4.5 37 3-46 89-126 (131)
262 PRK00431 RNase III inhibitor; 20.5 2E+02 0.0042 21.4 4.2 49 6-61 124-172 (177)
263 COG2390 DeoR Transcriptional r 20.5 2.7E+02 0.0058 23.4 5.4 72 31-104 135-214 (321)
264 PRK09529 bifunctional acetyl-C 20.4 2.8E+02 0.006 26.1 5.7 92 11-111 417-511 (711)
265 COG4850 Uncharacterized conser 20.2 2E+02 0.0043 24.8 4.5 40 13-56 258-297 (373)
266 PF05717 TnpB_IS66: IS66 Orf2 20.1 1.7E+02 0.0037 20.5 3.6 32 2-33 3-34 (107)
267 PF02445 NadA: Quinolinate syn 20.1 1E+02 0.0022 25.8 2.8 33 65-105 92-124 (296)
No 1
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=100.00 E-value=2.7e-42 Score=297.06 Aligned_cols=128 Identities=38% Similarity=0.661 Sum_probs=120.0
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|+||||+||+|||++||+|||+||++||+|++||+|+||+.|||+++++|++++++++++|++||++||+.+|.||+
T Consensus 255 ~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~ 334 (474)
T PRK10117 255 VQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLY 334 (474)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecC----CceeeecCCCC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRS----GNFRIKSAPSG 128 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~----G~~~v~~~~gg 128 (140)
|+++.+++++++|||++|||++|||+||||||| |||+ |.=+++-.+|.
T Consensus 335 y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGa 391 (474)
T PRK10117 335 YLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA 391 (474)
T ss_pred EecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccch
Confidence 999999999999999999999999999999998 6876 44455555543
No 2
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=100.00 E-value=5e-40 Score=284.12 Aligned_cols=132 Identities=36% Similarity=0.681 Sum_probs=125.5
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
++||+||||+||+|||++||+||++||++||+|++|++|+|++.|+|+++++|++++++++++|++||++||+.+|.||+
T Consensus 285 ~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~ 364 (487)
T TIGR02398 285 VKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQ 364 (487)
T ss_pred ceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecC--CceeeecCCCCcccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRS--GNFRIKSAPSGNRTH 132 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~--G~~~v~~~~gg~~~~ 132 (140)
|+++.++.+|+.+||++|||+++||+||||||| ||++ .-++|-|..+|...+
T Consensus 365 ~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~ 423 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVE 423 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhh
Confidence 999999999999999999999999999999998 6744 338999999998644
No 3
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=100.00 E-value=6.1e-40 Score=298.44 Aligned_cols=126 Identities=36% Similarity=0.501 Sum_probs=120.0
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
|++|+||||+||+|||.+||+|||+||++||+|+||++||||+.|+|+++++|++++.+++++|+|||++||+.+|.||+
T Consensus 339 ~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~ 418 (854)
T PLN02205 339 RIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIV 418 (854)
T ss_pred CEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAP 126 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~ 126 (140)
|++++++.+|+.|||++||||+|||+||||||| |||++.+..++..
T Consensus 419 ~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~ 469 (854)
T PLN02205 419 LIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLL 469 (854)
T ss_pred EEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCcccccccc
Confidence 999999999999999999999999999999998 7988766554433
No 4
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.1e-39 Score=276.31 Aligned_cols=127 Identities=47% Similarity=0.777 Sum_probs=119.3
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
||||+|+||+||+||+++|++|||+||++||+|++||+|+|++.|||+++++|+.++.+++++|++||++||+.+|+||+
T Consensus 282 ~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~ 361 (486)
T COG0380 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVH 361 (486)
T ss_pred ceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecC---CceeeecCCC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRS---GNFRIKSAPS 127 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~---G~~~v~~~~g 127 (140)
|++++++.++++|||++|||++|||+||||||| |||+ |.=+.+-.+|
T Consensus 362 ~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaG 416 (486)
T COG0380 362 YLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAG 416 (486)
T ss_pred EEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEecccc
Confidence 999999999999999999999999999999998 7777 4444444444
No 5
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=100.00 E-value=3.8e-39 Score=278.02 Aligned_cols=129 Identities=49% Similarity=0.825 Sum_probs=100.5
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
++|+||||+|++|||++||+||++||++||+|++||+|+|++.|++++.++|++++++++++|++||++||+.+|.||+|
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~ 356 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIY 356 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEE
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCC---ceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSG---NFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G---~~~v~~~~gg~~ 130 (140)
+++.++.+++.|||++|||++|||+||||||| |||++ .-+++-..|-..
T Consensus 357 ~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~ 413 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAE 413 (474)
T ss_dssp E-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGG
T ss_pred EecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHH
Confidence 99999999999999999999999999999998 67664 445555555433
No 6
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=2.2e-37 Score=282.74 Aligned_cols=129 Identities=43% Similarity=0.649 Sum_probs=122.4
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
|++|+||||+||+|||++||+||++||++||+|++||+|+||++|+|++.++|++++.++.++|++||++||+.+|.||+
T Consensus 363 ~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~ 442 (934)
T PLN03064 363 RKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIH 442 (934)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecC---CceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRS---GNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~---G~~~v~~~~gg~~ 130 (140)
|+.+.++.+|++|||++|||+++||+||||||| ||+. |..++ |..+|..
T Consensus 443 ~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLIL-SEfaGaa 499 (934)
T PLN03064 443 HLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLIL-SEFAGAA 499 (934)
T ss_pred EeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEE-eCCCchH
Confidence 999999999999999999999999999999998 7865 66666 7777655
No 7
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=100.00 E-value=1.6e-32 Score=235.66 Aligned_cols=129 Identities=52% Similarity=0.818 Sum_probs=124.1
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|++|||+|+.||++.+++||++||+++|+++++++|+|+++|++++.++|+++++++++++++||++||+.+|.|++
T Consensus 259 ~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~ 338 (456)
T TIGR02400 259 RKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIR 338 (456)
T ss_pred CeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCce----eeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNF----RIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~----~v~~~~gg~~~ 131 (140)
|+.+.++.+|+.++|++|||+++||++|||||| || |+| +|.|..+|...
T Consensus 339 ~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~--g~P~~g~vVlS~~~G~~~ 396 (456)
T TIGR02400 339 YLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAA--QDPKDGVLILSEFAGAAQ 396 (456)
T ss_pred EEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHh--cCCCCceEEEeCCCCChH
Confidence 999999999999999999999999999999998 89 999 99999888654
No 8
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=2.8e-32 Score=247.09 Aligned_cols=130 Identities=41% Similarity=0.592 Sum_probs=124.5
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|++|||+|+.||++++|+||++||++||+|+++++|+|+++|++++.++|+++++++++++++||++||+.+|.||+
T Consensus 279 ~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~ 358 (797)
T PLN03063 279 RKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIH 358 (797)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCce----eeecCCCCcccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNF----RIKSAPSGNRTH 132 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~----~v~~~~gg~~~~ 132 (140)
|+.+.++.+|+.++|++|||+++||++|||||| || |+| +|.|..+|.+..
T Consensus 359 ~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~--g~p~~gvlVlSe~~G~~~~ 417 (797)
T PLN03063 359 HLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVAC--QKAKKGVLVLSEFAGAGQS 417 (797)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHhee--ecCCCCCEEeeCCcCchhh
Confidence 999999999999999999999999999999998 89 887 999998887543
No 9
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.97 E-value=4e-31 Score=237.13 Aligned_cols=130 Identities=52% Similarity=0.847 Sum_probs=123.4
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|++|||+|+.||+..+|+||++||++||+++++++|+|+++|++.+.++|+++++++.+++++||++||+.+|.||+
T Consensus 265 ~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~ 344 (726)
T PRK14501 265 RKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIH 344 (726)
T ss_pred CEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEE
Confidence 47999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecC---CceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRS---GNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~---G~~~v~~~~gg~~ 130 (140)
|+.+.++++|++++|++|||+++||++|||||| ||+. |.++++..+||.+
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~ 402 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA 402 (726)
T ss_pred EEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH
Confidence 999999999999999999999999999999998 8865 6788888888765
No 10
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.96 E-value=1.5e-28 Score=210.59 Aligned_cols=129 Identities=53% Similarity=0.853 Sum_probs=122.5
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|++|||+++.||+..+++||++|++++|+|+++++|+|+|.|++++.++|.++++++++++++||.+||+.+|.||+
T Consensus 264 ~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~ 343 (460)
T cd03788 264 RKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVR 343 (460)
T ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEE
Confidence 47999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCce----eeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNF----RIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~----~v~~~~gg~~~ 131 (140)
|+.+.++.+++.++|++|||+++||++|||||| || |.| +|.|..+|...
T Consensus 344 ~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~--g~p~~g~vV~S~~~G~~~ 401 (460)
T cd03788 344 YLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVAC--QDDDPGVLILSEFAGAAE 401 (460)
T ss_pred EEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEE--ecCCCceEEEeccccchh
Confidence 999999999999999999999999999999998 89 999 99998887643
No 11
>KOG1050|consensus
Probab=99.92 E-value=3.3e-25 Score=198.99 Aligned_cols=125 Identities=37% Similarity=0.522 Sum_probs=118.5
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
|+||++|||+|++||+.+|+.||++||++||+|+++|+|+|++.|++.+.++|++++..+...+.+||++||+..+.||+
T Consensus 276 ~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~ 355 (732)
T KOG1050|consen 276 KKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVH 355 (732)
T ss_pred CceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCC--ceeeecC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSG--NFRIKSA 125 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G--~~~v~~~ 125 (140)
++...++..++.|+|++||++.++++||||||+ +|+++ .+-|-|.
T Consensus 356 ~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlse 407 (732)
T KOG1050|consen 356 SLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSE 407 (732)
T ss_pred EeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEee
Confidence 999999999999999999999999999999998 78777 5544443
No 12
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.65 E-value=2.4e-15 Score=125.28 Aligned_cols=116 Identities=18% Similarity=0.306 Sum_probs=94.6
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|++++|+.+.||++..++|++++.+++|++ .|+.+|.+......+...+.+++.+++.+.+. .+.
T Consensus 193 ~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~----~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~--------~v~ 260 (380)
T PRK15484 193 ETVLLYAGRISPDKGILLLMQAFEKLATAHSNL----KLVVVGDPTASSKGEKAAYQKKVLEAAKRIGD--------RCI 260 (380)
T ss_pred CeEEEEeccCccccCHHHHHHHHHHHHHhCCCe----EEEEEeCCccccccchhHHHHHHHHHHHhcCC--------cEE
Confidence 368999999999999999999999999999976 58888876433222233567777777776532 243
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCC-CCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPL-RDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~-rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+++..+|+.||++++||. .|||+++ || |.|+|+|+.||++.
T Consensus 261 -~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~--G~PVI~s~~gg~~E 314 (380)
T PRK15484 261 -MLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAA--GKPVLASTKGGITE 314 (380)
T ss_pred -EeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHc--CCCEEEeCCCCcHh
Confidence 5788999999999999999999997 5999987 88 99999999999874
No 13
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.61 E-value=8.3e-15 Score=120.33 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=87.3
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|++++|+++.||++..++||+.+.+.+|++ .|+.+|.....+ +++.++.++ +.++.+. ...|.
T Consensus 190 ~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~----~l~i~G~g~~~~-~~~~~~~~~---~~~~~~~------~~~v~ 255 (372)
T cd03792 190 RPYITQVSRFDPWKDPFGVIDAYRKVKERVPDP----QLVLVGSGATDD-PEGWIVYEE---VLEYAEG------DPDIH 255 (372)
T ss_pred CcEEEEEeccccccCcHHHHHHHHHHHhhCCCC----EEEEEeCCCCCC-chhHHHHHH---HHHHhCC------CCCeE
Confidence 468999999999999999999999999888875 588888654322 222233232 3322211 12365
Q ss_pred EEeCC-CCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGC-ISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~-~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
++... ++.+++.++|++||+++.||.+|||+++ || |+|+|+|+.||++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~--G~Pvv~s~~~~~~~ 310 (372)
T cd03792 256 VLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWK--GKPVIAGPVGGIPL 310 (372)
T ss_pred EEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHc--CCCEEEcCCCCchh
Confidence 65433 4999999999999999999999999998 88 99999999999763
No 14
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.56 E-value=6.5e-14 Score=115.72 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=93.8
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|++++|+.+.||++..++|++++++++|+ .++.|+.+|.+.....+ ..+++++++++.| ...-+
T Consensus 219 ~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~--~~~~l~ivG~~~~~g~~----~~~~l~~~~~~~~-------l~~~v 285 (405)
T TIGR03449 219 TKVVAFVGRIQPLKAPDVLLRAVAELLDRDPD--RNLRVIVVGGPSGSGLA----TPDALIELAAELG-------IADRV 285 (405)
T ss_pred CcEEEEecCCCcccCHHHHHHHHHHHHhhCCC--cceEEEEEeCCCCCcch----HHHHHHHHHHHcC-------CCceE
Confidence 36899999999999999999999999999987 35788999876432211 2345566666643 33434
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+.+.++.+++..+|+.||++++||..||++++ || |+|+|+|..||.+
T Consensus 286 ~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~--G~Pvi~~~~~~~~ 338 (405)
T TIGR03449 286 RFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQAC--GTPVVAARVGGLP 338 (405)
T ss_pred EECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHc--CCCEEEecCCCcH
Confidence 458899999999999999999999999999997 88 9999999999976
No 15
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.55 E-value=4.3e-14 Score=115.48 Aligned_cols=109 Identities=23% Similarity=0.327 Sum_probs=90.0
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+++.||++..++|++++++++|+...++.|+.+|... .++++++.+++. +....++
T Consensus 195 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~---------~~~~~~~~~~~~-------~~~~~v~ 258 (374)
T TIGR03088 195 VVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGP---------ARGACEQMVRAA-------GLAHLVW 258 (374)
T ss_pred eEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCc---------hHHHHHHHHHHc-------CCcceEE
Confidence 589999999999999999999999999999877788899988542 134455566553 2344556
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+.+. .+++..+|+.||+++.||..|||+++ || |+|+|+|+.||.+
T Consensus 259 ~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~--G~Pvv~s~~~g~~ 308 (374)
T TIGR03088 259 LPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMAS--GLPVIATAVGGNP 308 (374)
T ss_pred EcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHc--CCCEEEcCCCCcH
Confidence 6663 56889999999999999999999997 88 9999999999976
No 16
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.55 E-value=5.2e-14 Score=117.06 Aligned_cols=108 Identities=14% Similarity=0.252 Sum_probs=88.5
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc-E
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP-I 79 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p-v 79 (140)
+.+|++++|+++.||++..++|+..+.+++|++ .|+.+|... ..+++.+++++.+ ..+ |
T Consensus 193 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~----~l~i~G~g~---------~~~~l~~~~~~~~-------l~~~v 252 (398)
T cd03796 193 KITIVVISRLVYRKGIDLLVGIIPEICKKHPNV----RFIIGGDGP---------KRILLEEMREKYN-------LQDRV 252 (398)
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHHHhhCCCE----EEEEEeCCc---------hHHHHHHHHHHhC-------CCCeE
Confidence 368999999999999999999999999888875 577777531 1344555666532 223 5
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+ .+.++.+++..+|+.||++++||..|||+++ || |+|||+|++||.+-
T Consensus 253 ~~-~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~--G~PVI~s~~gg~~e 306 (398)
T cd03796 253 EL-LGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASC--GLLVVSTRVGGIPE 306 (398)
T ss_pred EE-eCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHc--CCCEEECCCCCchh
Confidence 44 7899999999999999999999999999987 99 99999999999864
No 17
>PLN02949 transferase, transferring glycosyl groups
Probab=99.54 E-value=8.5e-14 Score=120.13 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=92.4
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc-EE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP-IR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p-v~ 80 (140)
..+++++|+++-||+...++||+++.++.|+-..++.|+.+|..... +..++.+++++++++.+- .. |.
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~---~~~~~~~eL~~la~~l~L-------~~~V~ 338 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNK---EDEERLQKLKDRAKELGL-------DGDVE 338 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCc---ccHHHHHHHHHHHHHcCC-------CCcEE
Confidence 47899999999999999999999998865533335678888865221 122445677778876432 22 55
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
| .+.++.+++..+|+.||+++.||..|||+++ || |+|||+++.||..
T Consensus 339 f-~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~--G~PVIa~~~gGp~ 390 (463)
T PLN02949 339 F-HKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAA--GAVPIAHNSAGPK 390 (463)
T ss_pred E-eCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHc--CCcEEEeCCCCCc
Confidence 4 6889999999999999999999999999997 88 9999999999964
No 18
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.54 E-value=1.4e-13 Score=116.57 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=94.6
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCC-CCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHL-EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~-~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
.+|++++|+++.||+...++||..+.+.+|+.. .++.|+.+|....... .++.+++++++++.+ ..+.+
T Consensus 238 ~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~---~~~~~~L~~~~~~l~-------l~~~V 307 (419)
T cd03806 238 NQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDD---EKRVEDLKLLAKELG-------LEDKV 307 (419)
T ss_pred cEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCccc---HHHHHHHHHHHHHhC-------CCCeE
Confidence 579999999999999999999999999988632 3577888886422211 235677788887753 23334
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+.+.++.+++..+|+.||+++.||..|||+++ || |.|+|+++.||..
T Consensus 308 ~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~--G~pvIa~~~ggp~ 360 (419)
T cd03806 308 EFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAA--GLIPLAHASGGPL 360 (419)
T ss_pred EEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHc--CCcEEEEcCCCCc
Confidence 457889999999999999999999999999997 99 9999999999853
No 19
>PHA01633 putative glycosyl transferase group 1
Probab=99.52 E-value=1.6e-13 Score=114.40 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=84.3
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+++.||++..++|++++.+++|++..++.|+.+|. . .+ .+. +-. ..|++
T Consensus 149 ~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~------~---~~--------~~l----~l~--~~V~f 205 (335)
T PHA01633 149 IKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH------K---QF--------TQL----EVP--ANVHF 205 (335)
T ss_pred eEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH------H---HH--------HHc----CCC--CcEEE
Confidence 4688999999999999999999999999999877777776651 1 11 111 111 13655
Q ss_pred Ee--CCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IY--GCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~--~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.. +.++.+++.++|+.||++++||..|||+++ || |+|||+|+.||++-
T Consensus 206 ~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~--G~PVVas~~~~l~E 260 (335)
T PHA01633 206 VAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAM--GTPVIHQLMPPLDE 260 (335)
T ss_pred EecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHc--CCCEEEccCCCcee
Confidence 42 677899999999999999999999999998 88 99999999987654
No 20
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.52 E-value=1.8e-13 Score=115.41 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=89.1
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~ 82 (140)
.|++++|+.+.||++..++|++.+.+++|++ .|+.+|.. .+++++++++++.+ ..+.+.+
T Consensus 224 ~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~----~l~ivG~G---------~~~~~l~~~~~~~~-------l~~~V~~ 283 (406)
T PRK15427 224 EIISVARLTEKKGLHVAIEACRQLKEQGVAF----RYRILGIG---------PWERRLRTLIEQYQ-------LEDVVEM 283 (406)
T ss_pred EEEEEeCcchhcCHHHHHHHHHHHHhhCCCE----EEEEEECc---------hhHHHHHHHHHHcC-------CCCeEEE
Confidence 5899999999999999999999998888765 57777754 23456677777642 3445566
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCC------CCCcee-----eecCCceeeecCCCCcc
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLR------DEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~r------dGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+.++++|+..+|+.||+++.||.. ||++++ || |.|||+|++||++
T Consensus 284 ~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~--G~PVI~t~~~g~~ 340 (406)
T PRK15427 284 PGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAV--GIPVVSTLHSGIP 340 (406)
T ss_pred eCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhC--CCCEEEeCCCCch
Confidence 8999999999999999999999984 999987 88 9999999999987
No 21
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.51 E-value=1.2e-13 Score=114.65 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred EEEEEecC-ccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC--Ch-hHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy9724 2 SLVLSVDR-LDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRT--DV-KEYQDLKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 2 ~iil~VdR-ld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~--~~-~~y~~~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
.+|++++| +++.||++..++|++++.+++|++ .|+.+|..... .. ++-..++ +++.++++.+.+ ..
T Consensus 212 ~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~----~lvivG~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~---~~ 281 (396)
T cd03818 212 EVITFVARNLEPYRGFHVFMRALPRLLRARPDA----RVVIVGGDGVSYGAPPPDGESWK---QHMLDELGGRLD---LS 281 (396)
T ss_pred eEEEEECCCcccccCHHHHHHHHHHHHHHCCCc----EEEEEcCCCcccCCCCCCcccHH---HHHHHHhhcccC---cc
Confidence 57999998 999999999999999999998876 58888853211 00 0000112 223333332222 12
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.|+ +.+.++++++..+|+.||+++.+|..||++++ || |+|||+|+.||.+
T Consensus 282 ~V~-f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~--G~PVIas~~~g~~ 336 (396)
T cd03818 282 RVH-FLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMAC--GCLVVGSDTAPVR 336 (396)
T ss_pred eEE-EeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHC--CCCEEEcCCCCch
Confidence 354 47899999999999999999999999999986 99 9999999999976
No 22
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.50 E-value=1.8e-13 Score=124.46 Aligned_cols=117 Identities=20% Similarity=0.260 Sum_probs=83.8
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC---ChhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRT---DVKEYQDLKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~---~~~~y~~~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
|++|++|+|+++.||+...++||.++.+ ++..+.|+.+|.+... ...+..+..+++.+++++.+- ..
T Consensus 550 kpiIl~VGRL~~~KGid~LIeA~~~l~~----l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL------~g 619 (784)
T TIGR02470 550 KPIIFSMARLDRVKNLTGLVECYGRSPK----LRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL------HG 619 (784)
T ss_pred CcEEEEEeCCCccCCHHHHHHHHHHhHh----hCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC------CC
Confidence 4689999999999999999999987643 2335678888875321 112222445667777776432 12
Q ss_pred cEEEEeCC-CCHHHHHHHHH----HcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 78 PIRYIYGC-ISQDELASFYR----DAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 78 pv~~~~~~-~~~~el~aly~----~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.|.| .+. .+..+...+|+ .+||+++||++|||+|+ || |+|||+|++||++
T Consensus 620 ~V~f-lG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAc--GlPVVAT~~GG~~ 679 (784)
T TIGR02470 620 QIRW-IGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTC--GLPTFATRFGGPL 679 (784)
T ss_pred eEEE-ccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHc--CCCEEEcCCCCHH
Confidence 3544 443 35555555665 24799999999999998 99 9999999999986
No 23
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.50 E-value=1.5e-13 Score=110.01 Aligned_cols=107 Identities=21% Similarity=0.242 Sum_probs=83.9
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+.+|++++|+++.||++..++|+..+.+++|++ .++.+|... ..+.+.+.+.+. ++.+.+
T Consensus 192 ~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~----~l~ivG~g~---------~~~~~~~~~~~~-------~~~~~v 251 (358)
T cd03812 192 KFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNA----KLLLVGDGE---------LEEEIKKKVKEL-------GLEDKV 251 (358)
T ss_pred CEEEEEEeccccccChHHHHHHHHHHHHhCCCe----EEEEEeCCc---------hHHHHHHHHHhc-------CCCCcE
Confidence 357999999999999999999999999999875 577777431 123344455442 223333
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.+. .+++..+|+.||++++||..|||+++ || |+|||+|+.||.+.
T Consensus 252 ~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~--G~PvI~s~~~~~~~ 303 (358)
T cd03812 252 IFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQAS--GLPCILSDTITKEV 303 (358)
T ss_pred EEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHh--CCCEEEEcCCchhh
Confidence 33555 67789999999999999999999997 89 99999999999864
No 24
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.49 E-value=4.7e-13 Score=109.37 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=91.6
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhC---CCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHH-HhcCCCCCCcc
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKH---PEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGR-INGRFTTPNWS 77 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~---P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~-IN~~~g~~~~~ 77 (140)
.+|++++|+++.||++..++|++++.+++ |+ +.|+.+|..... ..+...+.+++++++++ .+ ..
T Consensus 212 ~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~----~~l~i~G~~~~~-~~~~~~~~~~l~~~~~~~~~-------l~ 279 (392)
T cd03805 212 KTFLSINRFERKKNIALAIEAFAILKDKLAEFKN----VRLVIAGGYDPR-VAENVEYLEELQRLAEELLL-------LE 279 (392)
T ss_pred eEEEEEeeecccCChHHHHHHHHHHHhhcccccC----eEEEEEcCCCCC-CchhHHHHHHHHHHHHHhcC-------CC
Confidence 57899999999999999999999998887 54 468888764322 12223556777777765 32 22
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.-+.+.+.++.+++..+|+.||++++||..|||+++ || |+|+|+|+.||.+
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~--G~PvI~s~~~~~~ 335 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYA--GKPVIACNSGGPL 335 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHc--CCCEEEECCCCcH
Confidence 333447899999999999999999999999999997 88 9999999999975
No 25
>PLN00142 sucrose synthase
Probab=99.49 E-value=2.8e-13 Score=123.49 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=86.5
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC-CCC--hhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPS-RTD--VKEYQDLKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~ps-r~~--~~~y~~~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
|++|++|+|+++.||+...++||+++.+..| ++.|+.+|.+. ... ..+..+..+++.+++++.+- ..
T Consensus 573 kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~----~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL------~~ 642 (815)
T PLN00142 573 KPIIFSMARLDRVKNLTGLVEWYGKNKRLRE----LVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL------KG 642 (815)
T ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHHhCC----CcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC------CC
Confidence 4589999999999999999999998866554 45788888651 111 11122233556677776432 12
Q ss_pred cEEEE---eCCCCHHHHHHHHH-HcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 78 PIRYI---YGCISQDELASFYR-DAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 78 pv~~~---~~~~~~~el~aly~-~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
-|.|. .+..+.++++.+|+ ++|+++.||++|||+++ || |+|||+|++||++
T Consensus 643 ~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~--GlPVVATdvGG~~ 702 (815)
T PLN00142 643 QFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTC--GLPTFATCQGGPA 702 (815)
T ss_pred cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHc--CCCEEEcCCCCHH
Confidence 25443 23566788888877 47999999999999998 99 9999999999986
No 26
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.48 E-value=4.1e-13 Score=114.89 Aligned_cols=106 Identities=24% Similarity=0.280 Sum_probs=83.8
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+++.||++..++|+++++++ ++.|+.+|.+. . .+.+++++++.+.+. .+.+
T Consensus 283 ~~i~~vGRl~~~KG~~~li~a~~~l~~~------~~~lvivG~g~----~---~~~~~l~~l~~~~~~--------~v~~ 341 (466)
T PRK00654 283 PLFAMVSRLTEQKGLDLVLEALPELLEQ------GGQLVLLGTGD----P---ELEEAFRALAARYPG--------KVGV 341 (466)
T ss_pred cEEEEeeccccccChHHHHHHHHHHHhc------CCEEEEEecCc----H---HHHHHHHHHHHHCCC--------cEEE
Confidence 5899999999999999999999999764 35677777542 1 345677777766421 2444
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+. +.+....+|+.||++++||.+|||+++ || |+|+|+|++||++-
T Consensus 342 ~~g~-~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~--G~p~V~~~~gG~~e 393 (466)
T PRK00654 342 QIGY-DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRY--GTLPIVRRTGGLAD 393 (466)
T ss_pred EEeC-CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHC--CCCEEEeCCCCccc
Confidence 4443 666677899999999999999999997 88 99999999999864
No 27
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.47 E-value=7.8e-13 Score=107.96 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=86.0
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+++.||++..++|++++. ++ +.++.++..... . ++.+++++.+.+.+... ..+++
T Consensus 202 ~~i~~~Grl~~~Kg~~~li~a~~~l~---~~----~~l~i~g~g~~~--~---~~~~~~~~~~~~~~~~~-----~~v~~ 264 (388)
T TIGR02149 202 PYILFVGRITRQKGVPHLLDAVHYIP---KD----VQVVLCAGAPDT--P---EVAEEVRQAVALLDRNR-----TGIIW 264 (388)
T ss_pred eEEEEEcccccccCHHHHHHHHHHHh---hc----CcEEEEeCCCCc--H---HHHHHHHHHHHHhcccc-----CceEE
Confidence 58999999999999999999999874 22 345555543211 1 34555666666543221 23777
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+++..+|+.||+++.||..|||+++ || |.|||+|+.||.+.
T Consensus 265 ~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~--G~PvI~s~~~~~~e 317 (388)
T TIGR02149 265 INKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMAC--GTPVVASATGGIPE 317 (388)
T ss_pred ecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHc--CCCEEEeCCCCHHH
Confidence 78889999999999999999999999999997 88 99999999999763
No 28
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.46 E-value=9e-13 Score=103.58 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=86.7
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+++.||++..++|+.++.+++|++ .|+.+|.... . ....+..++.+.+ ..+-+.
T Consensus 204 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~----~l~i~G~~~~----~---~~~~~~~~~~~~~-------~~~~v~ 265 (375)
T cd03821 204 RIILFLGRLHPKKGLDLLIEAFAKLAERFPDW----HLVIAGPDEG----G---YRAELKQIAAALG-------LEDRVT 265 (375)
T ss_pred cEEEEEeCcchhcCHHHHHHHHHHhhhhcCCe----EEEEECCCCc----c---hHHHHHHHHHhcC-------ccceEE
Confidence 57999999999999999999999999988875 5777775321 1 1223333444322 233344
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+++..+|+.||+++.||..|||+++ || |.|+|+|+.||.+.
T Consensus 266 ~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~--G~PvI~~~~~~~~~ 318 (375)
T cd03821 266 FTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALAC--GTPVVTTDKVPWQE 318 (375)
T ss_pred EcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhc--CCCEEEcCCCCHHH
Confidence 58899999999999999999999999999997 88 99999999999754
No 29
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.45 E-value=5.1e-13 Score=124.21 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=86.6
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCC-CChh-HHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSR-TDVK-EYQDLKEEMDQLVGRINGRFTTPNWSP 78 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr-~~~~-~y~~~~~~l~~lv~~IN~~~g~~~~~p 78 (140)
+++|++|+|+++.||+...++||.++.+..+.. ++.+ .+|.... .... ....+..++.+++++.+ ...
T Consensus 479 kpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~--nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lg-------L~g 548 (1050)
T TIGR02468 479 KPMILALARPDPKKNITTLVKAFGECRPLRELA--NLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYD-------LYG 548 (1050)
T ss_pred CcEEEEEcCCccccCHHHHHHHHHHhHhhccCC--CEEE-EEecCchhhhhhccchHHHHHHHHHHHHhC-------CCC
Confidence 468999999999999999999999987543311 2333 3453211 1110 01234556677777643 233
Q ss_pred EEEEeCCCCHHHHHHHHHHc----CEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 79 IRYIYGCISQDELASFYRDA----AVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~A----Dv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+.+.+.++++++..+|+.| ||+++||++|||+++ || |+|||+|++||++
T Consensus 549 ~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAc--GlPVVASdvGG~~ 607 (1050)
T TIGR02468 549 QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAH--GLPMVATKNGGPV 607 (1050)
T ss_pred eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHh--CCCEEEeCCCCcH
Confidence 34458889999999999998 699999999999998 99 9999999999976
No 30
>PLN02316 synthase/transferase
Probab=99.45 E-value=8.1e-13 Score=122.93 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=86.2
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
++|++|+||++.||++..++|+.++++. .+.|+.+|... + ..+++++.+++.+++..|.. -|.+
T Consensus 841 plVg~VGRL~~qKGvdlLi~Al~~ll~~------~~qlVIvG~Gp--d----~~~e~~l~~La~~Lg~~~~~----rV~f 904 (1036)
T PLN02316 841 PLVGIITRLTHQKGIHLIKHAIWRTLER------NGQVVLLGSAP--D----PRIQNDFVNLANQLHSSHHD----RARL 904 (1036)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHhhc------CcEEEEEeCCC--C----HHHHHHHHHHHHHhCccCCC----eEEE
Confidence 5899999999999999999999999863 25677777542 1 14567788888887554321 2433
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+..+......+|+.||++++||..|||+|+ || |+|+|++++||++-
T Consensus 905 -~g~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~--GtppVvs~vGGL~D 956 (1036)
T PLN02316 905 -CLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRY--GSIPVVRKTGGLFD 956 (1036)
T ss_pred -EecCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHc--CCCeEEEcCCCcHh
Confidence 3444555445799999999999999999998 78 99999999999973
No 31
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.45 E-value=1.7e-12 Score=105.35 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=91.4
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+.+|++++|+++.||+...++|+..+.+++|++ .|+.+|........ ...+++++++++.+ ..+-+
T Consensus 220 ~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~----~l~i~G~~~~~~~~---~~~~~~~~~~~~~~-------~~~~v 285 (398)
T cd03800 220 KPRILAVGRLDPRKGIDTLIRAYAELPELRERA----NLVIVGGPRDDILA---MDEEELRELARELG-------VIDRV 285 (398)
T ss_pred CcEEEEEcccccccCHHHHHHHHHHHHHhCCCe----EEEEEECCCCcchh---hhhHHHHHHHHhcC-------CCceE
Confidence 358999999999999999999999999887765 68888865443322 22344566666532 23334
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.+.++.+++..+|+.||++++||..||++++ || |+|+|+|..||.+.
T Consensus 286 ~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~--G~Pvi~s~~~~~~e 339 (398)
T cd03800 286 DFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMAC--GLPVVATAVGGPRD 339 (398)
T ss_pred EEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhc--CCCEEECCCCCHHH
Confidence 568899999999999999999999999999986 88 99999999998763
No 32
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.44 E-value=9.3e-13 Score=112.39 Aligned_cols=106 Identities=21% Similarity=0.203 Sum_probs=84.7
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+++.||++..++|++++.++. +.|+.+|... + .+.+++++++.+. +. -+.+
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~------~~lvi~G~g~----~---~~~~~l~~~~~~~----~~----~v~~ 350 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELG------GQLVVLGTGD----P---ELEEALRELAERY----PG----NVRV 350 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcC------cEEEEECCCC----H---HHHHHHHHHHHHC----CC----cEEE
Confidence 58999999999999999999999998642 5688777542 2 3456667777542 21 1434
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
....+.+++..+|+.||++++||..|||+++ || |+|+|+|++||++-
T Consensus 351 -~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~--G~pvI~s~~gg~~e 402 (473)
T TIGR02095 351 -IIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRY--GTVPIVRRTGGLAD 402 (473)
T ss_pred -EEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHC--CCCeEEccCCCccc
Confidence 4456888888999999999999999999997 88 99999999999863
No 33
>PRK14098 glycogen synthase; Provisional
Probab=99.44 E-value=9.9e-13 Score=113.96 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=86.0
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++|+|+++.||++..++|++++++. ++.|+.+|... . .+++++++++++.. .-|.+
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~------~~~lvivG~G~----~---~~~~~l~~l~~~~~--------~~V~~ 366 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVEL------DIQLVICGSGD----K---EYEKRFQDFAEEHP--------EQVSV 366 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhc------CcEEEEEeCCC----H---HHHHHHHHHHHHCC--------CCEEE
Confidence 4899999999999999999999998852 35788888541 1 35667777777631 12443
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+.++.+++..+|+.||++++||..|||+++ +| |+|+|++++||++
T Consensus 367 -~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~--G~ppVv~~~GGl~ 417 (489)
T PRK14098 367 -QTEFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSY--GTIPVAYAGGGIV 417 (489)
T ss_pred -EEecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhC--CCCeEEecCCCCc
Confidence 5678999999999999999999999999997 78 9999999999986
No 34
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.44 E-value=9.6e-13 Score=111.60 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=82.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHH--HhCCCCCCCeEEEEEec-CCCCChhH-HHHHHHHHHHHHHHHhcCCCCCCcc
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLL--EKHPEHLEKVTLLQIAV-PSRTDVKE-YQDLKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L--~~~P~~~~kv~Lvqi~~-psr~~~~~-y~~~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
++|++++|+++.||++..++||+++. +..| ++.+ .+|. +.+...+. ..++.+++.++++++ +..
T Consensus 249 ~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~----~l~l-i~G~g~~~~~l~~~~~~~~~~~~~~~~~~-------~l~ 316 (439)
T TIGR02472 249 PPILAISRPDRRKNIPSLVEAYGRSPKLQEMA----NLVL-VLGCRDDIRKMESQQREVLQKVLLLIDRY-------DLY 316 (439)
T ss_pred cEEEEEcCCcccCCHHHHHHHHHhChhhhhhc----cEEE-EeCCccccccccHHHHHHHHHHHHHHHHc-------CCC
Confidence 58999999999999999999998742 2222 2222 2343 22222111 123445556666653 233
Q ss_pred cEEEEeCCCCHHHHHHHHHHc----CEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 78 PIRYIYGCISQDELASFYRDA----AVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~A----Dv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.-+.+.+.++.+++..+|+.| |+++.||..|||+++ || |+|||+|++||++
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~--G~PvV~s~~gg~~ 376 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAAC--GLPIVATDDGGPR 376 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHh--CCCEEEeCCCCcH
Confidence 333457889999999999988 999999999999998 99 9999999999987
No 35
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.43 E-value=2e-12 Score=108.75 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=87.4
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..|++++|+.+.||++..++|+.++.+++|+. ++.++.+|... ..+++++++++.+ -.+.+.
T Consensus 231 ~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~--~l~~~iiG~g~---------~~~~l~~~~~~~~-------~~~~V~ 292 (407)
T cd04946 231 LRIVSCSYLVPVKRVDLIIKALAALAKARPSI--KIKWTHIGGGP---------LEDTLKELAESKP-------ENISVN 292 (407)
T ss_pred EEEEEeeccccccCHHHHHHHHHHHHHhCCCc--eEEEEEEeCch---------HHHHHHHHHHhcC-------CCceEE
Confidence 46899999999999999999999999999876 46666666531 2344555554321 123334
Q ss_pred EeCCCCHHHHHHHHHH--cCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRD--AAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~--ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.|.++.+|+.++|+. ||+++.+|..|||+++ || |.|||+|.+||.+-
T Consensus 293 f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~--G~PVIas~vgg~~e 347 (407)
T cd04946 293 FTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSF--GIPVIATNVGGTPE 347 (407)
T ss_pred EecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHc--CCCEEeCCCCCcHH
Confidence 5899999999999986 7899999999999987 78 99999999999873
No 36
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.42 E-value=1e-12 Score=118.41 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=86.5
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|+.|+|+++.||.+..++||.++++++|++ .|+.+|... .++++++++++.+ ....+.
T Consensus 518 ~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~----~LvIvG~G~---------~~~~L~~l~~~lg-------L~~~V~ 577 (694)
T PRK15179 518 FTVGTVMRVDDNKRPFLWVEAAQRFAASHPKV----RFIMVGGGP---------LLESVREFAQRLG-------MGERIL 577 (694)
T ss_pred eEEEEEEeCCccCCHHHHHHHHHHHHHHCcCe----EEEEEccCc---------chHHHHHHHHHcC-------CCCcEE
Confidence 47889999999999999999999999999976 588888642 2455677777643 234445
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+.+.. +++..+|+.||++++||.+|||+++ || |+|||+|++||.+
T Consensus 578 flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~--G~PVVat~~gG~~ 627 (694)
T PRK15179 578 FTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFS--GVPVVTTLAGGAG 627 (694)
T ss_pred EcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHc--CCeEEEECCCChH
Confidence 56664 3688999999999999999999998 99 9999999999975
No 37
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.42 E-value=1.1e-12 Score=112.41 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=87.5
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+.+.||++..++|++.+.++.|++ .|+.+|... .+ + ++.+++++++++.|-. ..|.|
T Consensus 294 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~----~l~IvG~g~-~~-~---~~~~e~~~li~~l~l~------~~V~f 358 (475)
T cd03813 294 PVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDA----EGWVIGPTD-ED-P---EYAEECRELVESLGLE------DNVKF 358 (475)
T ss_pred cEEEEEeccccccCHHHHHHHHHHHHHhCCCe----EEEEECCCC-cC-h---HHHHHHHHHHHHhCCC------CeEEE
Confidence 57999999999999999999999999988875 577766432 11 2 4567888888876431 23444
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+ .+++..+|+.||+++.||..|||+++ || |+|+|+|++||.+
T Consensus 359 -~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~--G~PVVatd~g~~~ 406 (475)
T cd03813 359 -TG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAA--GIPVVATDVGSCR 406 (475)
T ss_pred -cC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHc--CCCEEECCCCChH
Confidence 55 56788999999999999999999997 89 9999999999976
No 38
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.41 E-value=1.7e-12 Score=112.95 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=82.5
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..|++++|+.+.||++..++|+.++.+.+|++ .|+.+|... ..+++++++++.+. ...+.
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~----~l~i~G~G~---------~~~~l~~~i~~~~l-------~~~V~ 379 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPEL----TFDIYGEGG---------EKQKLQKIINENQA-------QDYIH 379 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCe----EEEEEECch---------hHHHHHHHHHHcCC-------CCeEE
Confidence 46899999999999999999999999999975 577777541 23566777766432 23234
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCC-Ccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPS-GNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~g-g~~ 130 (140)
+.+.. ++..+|+.||+++.||.+|||+++ || |.|||+|++| |.+
T Consensus 380 f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~--G~PVI~~dv~~G~~ 429 (500)
T TIGR02918 380 LKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGS--GLGMIGFDVNYGNP 429 (500)
T ss_pred EcCCC---CHHHHHHhCCEEEEcCccccccHHHHHHHHh--CCCEEEecCCCCCH
Confidence 46654 466789999999999999999998 99 9999999996 765
No 39
>PLN02939 transferase, transferring glycosyl groups
Probab=99.41 E-value=2.1e-12 Score=119.17 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=86.3
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
++|++|+|+++.||++..++|+.++++ + .+.|+.+|.... . .+.+++.+++.+.+. . .-|.|
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~~~Ll~--~----dvqLVIvGdGp~---~---~~e~eL~~La~~l~l----~--drV~F 841 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAIYKTAE--L----GGQFVLLGSSPV---P---HIQREFEGIADQFQS----N--NNIRL 841 (977)
T ss_pred eEEEEeecCCcccChHHHHHHHHHHhh--c----CCEEEEEeCCCc---H---HHHHHHHHHHHHcCC----C--CeEEE
Confidence 589999999999999999999999875 2 356888875421 1 345667777776532 1 12544
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+..+.++...+|+.||++++||.+|||+|+ || |+|+|++++||++.
T Consensus 842 -lG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAy--GtPPVVs~vGGL~D 893 (977)
T PLN02939 842 -ILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRY--GSVPIVRKTGGLND 893 (977)
T ss_pred -EeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHC--CCCEEEecCCCCcc
Confidence 5677887778999999999999999999998 88 99999999999863
No 40
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.41 E-value=3.9e-12 Score=102.54 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=87.1
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..+++++|+.+.||++..++|++.+.+++|++ .|+.+|.. .+.+++++++++.+ ..+.+.
T Consensus 189 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~----~l~ivG~g---------~~~~~~~~~~~~~~-------~~~~v~ 248 (367)
T cd05844 189 PRILFVGRFVEKKGPLLLLEAFARLARRVPEV----RLVIIGDG---------PLLAALEALARALG-------LGGRVT 248 (367)
T ss_pred cEEEEEEeeccccChHHHHHHHHHHHHhCCCe----EEEEEeCc---------hHHHHHHHHHHHcC-------CCCeEE
Confidence 47899999999999999999999999988865 57777743 22455666776532 233335
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCC------CCCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPL------RDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~------rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+.+.++.+++..+|+.||++++||. .|||+++ || |.|+|+|..||.+
T Consensus 249 ~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~--G~PvI~s~~~~~~ 306 (367)
T cd05844 249 FLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQAS--GVPVVATRHGGIP 306 (367)
T ss_pred ECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHc--CCCEEEeCCCCch
Confidence 5889999999999999999999997 5889886 88 9999999999975
No 41
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.36 E-value=6.9e-12 Score=106.29 Aligned_cols=105 Identities=22% Similarity=0.231 Sum_probs=83.2
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+++.||++..++|++++.+++ +.|+.+|... . .+.+.+.+++.+.. ..+.+
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~------~~lvi~G~g~----~---~~~~~~~~~~~~~~--------~~v~~ 355 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELG------GQLVILGSGD----P---EYEEALRELAARYP--------GRVAV 355 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcC------cEEEEEecCC----H---HHHHHHHHHHHhCC--------CcEEE
Confidence 57999999999999999999999998753 5677777541 1 34556666665531 23555
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+.+ .+.++...+|+.||++++||..||++++ || |+|+|+|++||++
T Consensus 356 ~~~-~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~--G~pvI~~~~gg~~ 406 (476)
T cd03791 356 LIG-YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRY--GTVPIVRATGGLA 406 (476)
T ss_pred EEe-CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhC--CCCCEECcCCCcc
Confidence 444 4577778899999999999999999997 88 9999999999986
No 42
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=5.4e-12 Score=111.43 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=86.0
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|.+|+|+.+.||....++|+.++++++|++ .|+.+|.. ..++++++++.+.+ +.+-+.
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdi----rLvIVGdG---------~~~eeLk~la~elg-------L~d~V~ 458 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPAT----RFVLVGDG---------DLRAEAQKRAEQLG-------ILERIL 458 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCe----EEEEEeCc---------hhHHHHHHHHHHcC-------CCCcEE
Confidence 36889999999999999999999999999875 58888854 23456677777643 333234
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+. .+++..+|+.||+++.||.+|||+++ || |+|||+|++||.+.
T Consensus 459 FlG~--~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~--GlPVVATdvGG~~E 509 (578)
T PRK15490 459 FVGA--SRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMV--GVPVISTPAGGSAE 509 (578)
T ss_pred ECCC--hhhHHHHHHhCCEEEEcccccCccHHHHHHHHh--CCCEEEeCCCCcHH
Confidence 4555 56789999999999999999999997 88 99999999999873
No 43
>PLN02275 transferase, transferring glycosyl groups
Probab=99.34 E-value=1.1e-11 Score=103.04 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=83.7
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHH-----------------hCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHH
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLE-----------------KHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLV 64 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~-----------------~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv 64 (140)
.++++++|+.+.||++..++|+..+.. .+| ++.|+.+|... .++++++.+
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~----~i~l~ivG~G~---------~~~~l~~~~ 280 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYP----RLLFIITGKGP---------QKAMYEEKI 280 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCC----CeEEEEEeCCC---------CHHHHHHHH
Confidence 467899999999999999999988753 244 46788888652 245666777
Q ss_pred HHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEEC---CCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 65 GRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVT---PLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 65 ~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvt---s~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
++.+ ...++++.+.++++++..+|+.||+++++ +..+||.++ || |+|||+|++||.+
T Consensus 281 ~~~~-------l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~--G~PVVa~~~gg~~ 345 (371)
T PLN02275 281 SRLN-------LRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC--GLPVCAVSYSCIG 345 (371)
T ss_pred HHcC-------CCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC--CCCEEEecCCChH
Confidence 6643 24477777778999999999999999974 334788765 99 9999999999975
No 44
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.34 E-value=4.5e-12 Score=93.09 Aligned_cols=109 Identities=27% Similarity=0.428 Sum_probs=82.4
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEK-HPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~-~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv 79 (140)
+++|++++|+++.||+...+.|++.+.++ .|++ .|+.+|.. .....+..++...|- -.-+
T Consensus 15 ~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~----~l~i~G~~---------~~~~~~~~~~~~~~~------~~~i 75 (172)
T PF00534_consen 15 KKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNY----KLVIVGDG---------EYKKELKNLIEKLNL------KENI 75 (172)
T ss_dssp SEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTE----EEEEESHC---------CHHHHHHHHHHHTTC------GTTE
T ss_pred CeEEEEEecCccccCHHHHHHHHHHHHhhcCCCe----EEEEEccc---------ccccccccccccccc------cccc
Confidence 47899999999999999999999999986 6654 57776611 123344555554321 1236
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+ .+.++.+++..+|+.||+++.||..||++++ +| |.|+|+|+.||.+.
T Consensus 76 ~~-~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~--g~pvI~~~~~~~~e 129 (172)
T PF00534_consen 76 IF-LGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMAC--GCPVIASDIGGNNE 129 (172)
T ss_dssp EE-EESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHT--T-EEEEESSTHHHH
T ss_pred cc-cccccccccccccccceecccccccccccccccccccc--ccceeeccccCCce
Confidence 55 5566799999999999999999999999997 77 99999999998864
No 45
>PRK14099 glycogen synthase; Provisional
Probab=99.34 E-value=1.2e-11 Score=107.09 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=79.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++|+|+++.||++..++|++++++. .+.|+.+|... + .+++++++++.+. + ..+.+
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~~~l~~~------~~~lvivG~G~----~---~~~~~l~~l~~~~----~----~~v~~ 354 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEALPTLLGE------GAQLALLGSGD----A---ELEARFRAAAQAY----P----GQIGV 354 (485)
T ss_pred cEEEEEecCCccccHHHHHHHHHHHHhc------CcEEEEEecCC----H---HHHHHHHHHHHHC----C----CCEEE
Confidence 3677899999999999999999999853 34678877641 1 3456666676542 1 12434
Q ss_pred EeCCCCHHHHHHHH-HHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFY-RDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly-~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+. .+++..+| +.||++++||..|||+++ || |+|+|.|++||++-
T Consensus 355 ~~G~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~--G~ppVvs~~GGl~d 406 (485)
T PRK14099 355 VIGY--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRY--GAVPVVARVGGLAD 406 (485)
T ss_pred EeCC--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHC--CCCcEEeCCCCccc
Confidence 4554 57788876 569999999999999998 88 98888899999864
No 46
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.34 E-value=7.7e-12 Score=108.32 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=82.3
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
+++++|+||.+-||+...++||+.+.+.+|++ .|+.+|... .++++++++.+.+ .. +.+
T Consensus 229 ~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~----~l~ivGdGp---------~~~~L~~~a~~l~-------l~-~~v 287 (462)
T PLN02846 229 KGAYYIGKMVWSKGYKELLKLLHKHQKELSGL----EVDLYGSGE---------DSDEVKAAAEKLE-------LD-VRV 287 (462)
T ss_pred eEEEEEecCcccCCHHHHHHHHHHHHhhCCCe----EEEEECCCc---------cHHHHHHHHHhcC-------Cc-EEE
Confidence 46899999999999999999999998888875 588877652 2456677777653 22 334
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGN 129 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~ 129 (140)
+.+..+.+ .+|+.+||++.||..|||++| || |+|||+++.+|.
T Consensus 288 f~G~~~~~---~~~~~~DvFv~pS~~Et~g~v~lEAmA~--G~PVVa~~~~~~ 335 (462)
T PLN02846 288 YPGRDHAD---PLFHDYKVFLNPSTTDVVCTTTAEALAM--GKIVVCANHPSN 335 (462)
T ss_pred ECCCCCHH---HHHHhCCEEEECCCcccchHHHHHHHHc--CCcEEEecCCCc
Confidence 66665555 589999999999999999998 99 999999999874
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.33 E-value=8.7e-12 Score=106.33 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=80.6
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+.+.||++..++|++++ |+ +.|+.+|.. .+++++++++.. .+|+|
T Consensus 264 ~~i~~vGrl~~~K~~~~li~a~~~~----~~----~~l~ivG~G---------~~~~~l~~~~~~----------~~V~f 316 (465)
T PLN02871 264 PLIVYVGRLGAEKNLDFLKRVMERL----PG----ARLAFVGDG---------PYREELEKMFAG----------TPTVF 316 (465)
T ss_pred eEEEEeCCCchhhhHHHHHHHHHhC----CC----cEEEEEeCC---------hHHHHHHHHhcc----------CCeEE
Confidence 5799999999999999988887654 54 468877743 123455555542 13554
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.++.+++..+|+.||++++||..|||+++ || |+|||+|..||++.
T Consensus 317 -~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~--G~PVI~s~~gg~~e 368 (465)
T PLN02871 317 -TGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMAS--GVPVVAARAGGIPD 368 (465)
T ss_pred -eccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHc--CCCEEEcCCCCcHh
Confidence 7899999999999999999999999999987 89 99999999999753
No 48
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.32 E-value=2.2e-11 Score=97.34 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=84.2
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc-EE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP-IR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p-v~ 80 (140)
.+|++++|++..||++..++|+..+.+++|++ .|+.+|..... ..+.+.+.+.+.+.+ ..+ |.
T Consensus 186 ~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~----~l~ivG~~~~~-----~~~~~~~~~~~~~~~-------~~~~v~ 249 (355)
T cd03819 186 PVILLPGRLTRWKGQEVFIEALARLKKDDPDV----HLLIVGDAQGR-----RFYYAELLELIKRLG-------LQDRVT 249 (355)
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhcCCCe----EEEEEECCccc-----chHHHHHHHHHHHcC-------CcceEE
Confidence 57999999999999999999999998876655 58877765322 134455555555432 222 54
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECC-CCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTP-LRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts-~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
| .+. .+++..+|+.||++++|| ..|||+++ || |+|+|+|+.||.+
T Consensus 250 ~-~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~--G~PvI~~~~~~~~ 300 (355)
T cd03819 250 F-VGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAM--GRPVIASDHGGAR 300 (355)
T ss_pred E-cCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhc--CCCEEEcCCCCcH
Confidence 4 555 678999999999999999 78999987 88 9999999999975
No 49
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.32 E-value=1.2e-11 Score=98.68 Aligned_cols=105 Identities=22% Similarity=0.344 Sum_probs=82.7
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc-EE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP-IR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p-v~ 80 (140)
.++++++|+.+.||+...++|+.++.+++|++ .|+.+|... ..+++.+.+.+.| ..+ |.
T Consensus 189 ~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~----~l~i~G~g~---------~~~~~~~~~~~~~-------~~~~v~ 248 (360)
T cd04951 189 FVILAVGRLVEAKDYPNLLKAFAKLLSDYLDI----KLLIAGDGP---------LRATLERLIKALG-------LSNRVK 248 (360)
T ss_pred EEEEEEeeCchhcCcHHHHHHHHHHHhhCCCe----EEEEEcCCC---------cHHHHHHHHHhcC-------CCCcEE
Confidence 57999999999999999999999999988765 577777432 1234455555432 233 44
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+ .+. .+++..+|+.||+++.||..|||+++ || |.|+|+|..||.+.
T Consensus 249 ~-~g~--~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~--G~PvI~~~~~~~~e 299 (360)
T cd04951 249 L-LGL--RDDIAAYYNAADLFVLSSAWEGFGLVVAEAMAC--ELPVVATDAGGVRE 299 (360)
T ss_pred E-ecc--cccHHHHHHhhceEEecccccCCChHHHHHHHc--CCCEEEecCCChhh
Confidence 4 554 46788999999999999999999987 88 99999999999865
No 50
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.31 E-value=1.8e-11 Score=102.02 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=83.1
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|+++||+.+.||+...++|++++ +++|+ +.|+.+|... .++++++++++.| ...|.|
T Consensus 230 ~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~----~~l~ivG~g~---------~~~~l~~~~~~~~-------l~~v~f 288 (412)
T PRK10307 230 KIVLYSGNIGEKQGLELVIDAARRL-RDRPD----LIFVICGQGG---------GKARLEKMAQCRG-------LPNVHF 288 (412)
T ss_pred EEEEEcCccccccCHHHHHHHHHHh-ccCCC----eEEEEECCCh---------hHHHHHHHHHHcC-------CCceEE
Confidence 5799999999999999999999876 45554 5688887541 2355666666543 223654
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee---------eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS---------FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv---------A~~~G~~~v~~~~gg~~ 130 (140)
.+.++.+++..+|+.||++++||..|+++++ || |+|||+|..||..
T Consensus 289 -~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~--G~PVi~s~~~g~~ 343 (412)
T PRK10307 289 -LPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLAS--GRNVVATAEPGTE 343 (412)
T ss_pred -eCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHc--CCCEEEEeCCCch
Confidence 7889999999999999999999999986543 89 9999999998854
No 51
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.29 E-value=4.4e-11 Score=100.93 Aligned_cols=111 Identities=11% Similarity=0.022 Sum_probs=84.8
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCC--CCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEH--LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~--~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv 79 (140)
.++++++|+.+.||++..++|++.+.+..++. ..++.|+.+|... .++++++++++. +...+
T Consensus 233 ~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~---------~~~~l~~~~~~~-------~l~~~ 296 (415)
T cd03816 233 ALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP---------LKEKYLERIKEL-------KLKKV 296 (415)
T ss_pred eEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc---------cHHHHHHHHHHc-------CCCcE
Confidence 47888999999999999999999998643221 1246788888542 245566677653 23568
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEEC---CCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVT---PLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvt---s~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+++.+.++.+++..+|++||+++.+ +..+||.++ || |+|||+|+.||.+
T Consensus 297 ~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~--G~PVI~s~~~~~~ 353 (415)
T cd03816 297 TIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGC--GLPVCALDFKCID 353 (415)
T ss_pred EEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHc--CCCEEEeCCCCHH
Confidence 7878889999999999999999863 334677764 99 9999999999875
No 52
>PHA01630 putative group 1 glycosyl transferase
Probab=99.29 E-value=1.8e-11 Score=101.41 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=76.1
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~ 82 (140)
++..++|+++.||++..++|++++.+++|++ .|+.+|... . +. + +. .+ .. +
T Consensus 144 vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~----~llivG~~~----~---~~--~---l~-~~---------~~---~ 194 (331)
T PHA01630 144 VLAILPHSWDRKGGDIVVKIFHELQNEGYDF----YFLIKSSNM----L---DP--R---LF-GL---------NG---V 194 (331)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHhhCCCE----EEEEEeCcc----c---ch--h---hc-cc---------cc---e
Confidence 5567778999999999999999999887754 577777211 1 11 1 10 01 11 1
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.++.+++..+|+.||++++||..|||+++ || |+|||+|++||.+-
T Consensus 195 ~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~--G~PVIas~~gg~~E 246 (331)
T PHA01630 195 KTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALAL--GLDVVVTEKGAWSE 246 (331)
T ss_pred eccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHc--CCCEEEeCCCCchh
Confidence 3467899999999999999999999999998 99 99999999999653
No 53
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.29 E-value=2.7e-11 Score=94.04 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=81.3
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
++++++++|+.+.||++..++|++++.+.+|++ .|+.+|... + ...+.+++.+.+ ..+.+
T Consensus 178 ~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~----~l~i~G~~~-----~----~~~~~~~~~~~~-------~~~~v 237 (348)
T cd03820 178 SKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDW----KLRIVGDGP-----E----REALEALIKELG-------LEDRV 237 (348)
T ss_pred CcEEEEEEeeccccCHHHHHHHHHHHHhcCCCe----EEEEEeCCC-----C----HHHHHHHHHHcC-------CCCeE
Confidence 357999999999999999999999999888875 566666431 1 223344555432 23434
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+.+. .+++..+|+.||+++.||..|||+++ || |+|+|+|..+|.+
T Consensus 238 ~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~--G~Pvi~~~~~~~~ 288 (348)
T cd03820 238 ILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAF--GLPVISFDCPTGP 288 (348)
T ss_pred EEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHc--CCCEEEecCCCch
Confidence 44555 78899999999999999999999997 88 9999999976654
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.28 E-value=5.1e-11 Score=93.78 Aligned_cols=108 Identities=20% Similarity=0.348 Sum_probs=86.2
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|+.++|+.+.||++..++|++.+.+++|+ +.|+.+|... ..+++.+++.+.+ ..+-+.
T Consensus 203 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~----~~l~i~G~~~---------~~~~~~~~~~~~~-------~~~~v~ 262 (374)
T cd03817 203 PVLLYVGRLAKEKNIDFLIRAFARLLKEEPD----VKLVIVGDGP---------EREELEELARELG-------LADRVI 262 (374)
T ss_pred eEEEEEeeeecccCHHHHHHHHHHHHHhCCC----eEEEEEeCCc---------hHHHHHHHHHHcC-------CCCcEE
Confidence 5789999999999999999999999987665 4677777431 1234455555432 223345
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+++..+|+.||+++.||..||+++. || |+|+|++..||.+.
T Consensus 263 ~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~--g~PvI~~~~~~~~~ 315 (374)
T cd03817 263 FTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAA--GLPVVAVDAPGLPD 315 (374)
T ss_pred EeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHc--CCcEEEeCCCChhh
Confidence 57899999999999999999999999999986 88 99999999999753
No 55
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.28 E-value=3.2e-11 Score=97.75 Aligned_cols=97 Identities=24% Similarity=0.294 Sum_probs=76.4
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
+.+++++|+++.||++..++|++++ | +.|+.+|... + .+++++ .. ...|.|
T Consensus 196 ~~il~~G~~~~~K~~~~li~a~~~~----~-----~~l~ivG~g~-----~----~~~l~~---~~--------~~~V~~ 246 (351)
T cd03804 196 DYYLSVGRLVPYKRIDLAIEAFNKL----G-----KRLVVIGDGP-----E----LDRLRA---KA--------GPNVTF 246 (351)
T ss_pred CEEEEEEcCccccChHHHHHHHHHC----C-----CcEEEEECCh-----h----HHHHHh---hc--------CCCEEE
Confidence 4789999999999999999999875 3 3477777541 1 122222 10 123544
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.++.+|+..+|+.||++++||. |||+++ || |+|+|++..||.+-
T Consensus 247 -~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~--G~Pvi~~~~~~~~e 297 (351)
T cd03804 247 -LGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMAS--GTPVIAYGKGGALE 297 (351)
T ss_pred -ecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHc--CCCEEEeCCCCCcc
Confidence 789999999999999999999999 999997 88 99999999999763
No 56
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.27 E-value=4.5e-11 Score=94.71 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=85.1
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
++|++++|+.+.||++..++|+..+.+.+|+ +.|+.+|...... ......+ .+. +..+.+.
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~----~~l~i~G~~~~~~----~~~~~~~----~~~-------~~~~~v~ 256 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPD----PKLVIVGKRGWLN----EELLARL----REL-------GLGDRVR 256 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCC----CCEEEecCCcccc----HHHHHHH----HHc-------CCCCeEE
Confidence 5789999999999999999999999998884 4577777543221 1111111 221 2234455
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+++..+|+.||+++.||..||++++ |+ |.|+|+|..||.+.
T Consensus 257 ~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~--G~pvI~~~~~~~~e 309 (365)
T cd03809 257 FLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMAC--GTPVIASNISSLPE 309 (365)
T ss_pred ECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcC--CCcEEecCCCCccc
Confidence 68999999999999999999999999999987 77 99999999999764
No 57
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.27 E-value=8.9e-11 Score=93.04 Aligned_cols=111 Identities=22% Similarity=0.252 Sum_probs=82.6
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcc-cE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS-PI 79 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~-pv 79 (140)
+.+|++++|+.+.||++..++|++.+.+++|++ .|+.+|...... . .......+++.+.+ .. -|
T Consensus 185 ~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~----~l~i~G~~~~~~-~---~~~~~~~~~i~~~~-------~~~~v 249 (366)
T cd03822 185 RPVLLTFGLLRPYKGLELLLEALPLLVAKHPDV----RLLVAGETHPDL-E---RYRGEAYALAERLG-------LADRV 249 (366)
T ss_pred CeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCe----EEEEeccCccch-h---hhhhhhHhHHHhcC-------CCCcE
Confidence 357899999999999999999999999988865 577776532211 1 11111012333322 23 35
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCC--CCcee-----eecCCceeeecCCCC
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRD--EWSNS-----FSRSGNFRIKSAPSG 128 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rd--GmnLv-----A~~~G~~~v~~~~gg 128 (140)
.+..+.++.+++..+|+.||+++.||..| |++++ || |.|+|+|+.||
T Consensus 250 ~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~--G~PvI~~~~~~ 303 (366)
T cd03822 250 IFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGF--GKPVISTPVGH 303 (366)
T ss_pred EEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHc--CCCEEecCCCC
Confidence 55444499999999999999999999999 99886 78 99999999999
No 58
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.26 E-value=7.4e-11 Score=93.94 Aligned_cols=108 Identities=23% Similarity=0.270 Sum_probs=86.0
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..|++++|+.+.||++..++|++++.+++|++ .|+.+|... ..+++.+.+.+.+ ..+-+.
T Consensus 180 ~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~----~l~i~G~~~---------~~~~~~~~~~~~~-------~~~~v~ 239 (355)
T cd03799 180 LRILSVGRLVEKKGLDYLLEALALLKDRGIDF----RLDIVGDGP---------LRDELEALIAELG-------LEDRVT 239 (355)
T ss_pred eEEEEEeeeccccCHHHHHHHHHHHhhcCCCe----EEEEEECCc---------cHHHHHHHHHHcC-------CCCeEE
Confidence 46899999999999999999999998876654 577777432 1234455555532 234445
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCC------CCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLR------DEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~r------dGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+|+..+|+.||+++.||.. |||++. || |.|+|+|..||.+.
T Consensus 240 ~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~--G~Pvi~~~~~~~~~ 298 (355)
T cd03799 240 LLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAM--GLPVISTDVSGIPE 298 (355)
T ss_pred ECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHc--CCCEEecCCCCcch
Confidence 58899999999999999999999999 999886 88 99999999999763
No 59
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.26 E-value=5e-11 Score=95.39 Aligned_cols=105 Identities=18% Similarity=0.120 Sum_probs=80.3
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
+.+++++|+++.||+...++|+.++.. ++.|+.+|..... . ++.+.+.+ + ++. ..-|.
T Consensus 194 ~~i~~~G~~~~~Kg~~~li~a~~~l~~-------~~~l~ivG~~~~~--~---~~~~~~~~---~----~~~--~~~V~- 251 (363)
T cd04955 194 RYYLLVGRIVPENNIDDLIEAFSKSNS-------GKKLVIVGNADHN--T---PYGKLLKE---K----AAA--DPRII- 251 (363)
T ss_pred cEEEEEecccccCCHHHHHHHHHhhcc-------CceEEEEcCCCCc--c---hHHHHHHH---H----hCC--CCcEE-
Confidence 457899999999999999999987743 4678888865322 2 23333222 1 111 12354
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCC-CCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLR-DEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~r-dGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+.+.++.+++..+|+.||++++||.. |||+++ || |+|+|+|++||.+
T Consensus 252 ~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~--G~PvI~s~~~~~~ 304 (363)
T cd04955 252 FVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAY--GCPVLASDNPFNR 304 (363)
T ss_pred EccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHc--CCCEEEecCCccc
Confidence 47899999999999999999999999 999997 88 9999999999875
No 60
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.25 E-value=3.3e-11 Score=108.68 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=80.5
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~ 82 (140)
.+++|+|+.+.||+...++|++.+.++.|++ .|+.+|... .++++++++.+.+- .|.|
T Consensus 548 giLfVGRLa~EKGld~LLeAla~L~~~~pnv----rLvIVGDGP---------~reeLe~la~eLgL--------~V~F- 605 (794)
T PLN02501 548 GAYFLGKMVWAKGYRELIDLLAKHKNELDGF----NLDVFGNGE---------DAHEVQRAAKRLDL--------NLNF- 605 (794)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHHhhCCCe----EEEEEcCCc---------cHHHHHHHHHHcCC--------EEEe-
Confidence 4789999999999999999999998888864 688887542 24556667766432 2544
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+..+.. ..+|+.+||++.||..|||++| || |.|||+++.||..
T Consensus 606 LG~~dd~--~~lyasaDVFVlPS~sEgFGlVlLEAMA~--GlPVVATd~pG~e 654 (794)
T PLN02501 606 LKGRDHA--DDSLHGYKVFINPSISDVLCTATAEALAM--GKFVVCADHPSNE 654 (794)
T ss_pred cCCCCCH--HHHHHhCCEEEECCCcccchHHHHHHHHc--CCCEEEecCCCCc
Confidence 4443333 4799999999999999999998 99 9999999999864
No 61
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.23 E-value=5.4e-11 Score=96.95 Aligned_cols=105 Identities=22% Similarity=0.337 Sum_probs=79.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..+++++|+.+.||++..++|+.++.+.+|++ .|+.+|.... ...+.+++.+.+ ....+.
T Consensus 205 ~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~----~l~i~G~g~~---------~~~~~~~~~~~~-------~~~~v~ 264 (372)
T cd04949 205 HKIITVARLAPEKQLDQLIKAFAKVVKQVPDA----TLDIYGYGDE---------EEKLKELIEELG-------LEDYVF 264 (372)
T ss_pred CeEEEEEccCcccCHHHHHHHHHHHHHhCCCc----EEEEEEeCch---------HHHHHHHHHHcC-------CcceEE
Confidence 46899999999999999999999999999976 4777775431 122333333322 223333
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCC-Ccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPS-GNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~g-g~~ 130 (140)
+.+ ..+++..+|+.||+++.||..|||+++ || |.|+|++++| |.+
T Consensus 265 ~~g--~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~--G~PvI~~~~~~g~~ 315 (372)
T cd04949 265 LKG--YTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSH--GLPVISYDVNYGPS 315 (372)
T ss_pred EcC--CCCCHHHHHhhhhEEEecccccccChHHHHHHhC--CCCEEEecCCCCcH
Confidence 455 356789999999999999999999997 88 9999999987 543
No 62
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.23 E-value=4.9e-11 Score=101.03 Aligned_cols=94 Identities=14% Similarity=0.011 Sum_probs=72.2
Q ss_pred EEEEEecC-c-cccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE
Q psy9724 2 SLVLSVDR-L-DYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79 (140)
Q Consensus 2 ~iil~VdR-l-d~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv 79 (140)
++|++++| + +..||+...++|+.++ .+ ++.|+.+|..... .. ..+
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l---~~----~~~L~ivG~g~~~-------~~-------------------~~v 288 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMAL---GD----KIELHTFGKFSPF-------TA-------------------GNV 288 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhC---CC----CeEEEEEcCCCcc-------cc-------------------cce
Confidence 57899998 4 4789999999999875 22 4578888753210 00 123
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.++.-.-+.+++..+|+.||++++||..|||.++ || |+|||+|++||++
T Consensus 289 ~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~--G~PVVat~~gG~~ 342 (405)
T PRK10125 289 VNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSI--GVPVIATHSDAAR 342 (405)
T ss_pred EEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHc--CCCEEEeCCCChH
Confidence 3322234788999999999999999999999998 99 9999999999976
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.23 E-value=1.3e-10 Score=90.62 Aligned_cols=109 Identities=21% Similarity=0.342 Sum_probs=85.7
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+..+++++++++.||+...++|++.+.+++|++ .|+.+|... + .+.+.+++++. +..+.+
T Consensus 202 ~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~----~l~i~g~~~-----~----~~~~~~~~~~~-------~~~~~v 261 (377)
T cd03798 202 KKVILFVGRLVPRKGIDYLIEALARLLKKRPDV----HLVIVGDGP-----L----REALEALAAEL-------GLEDRV 261 (377)
T ss_pred ceEEEEeccCccccCHHHHHHHHHHHHhcCCCe----EEEEEcCCc-----c----hHHHHHHHHhc-------CCcceE
Confidence 357899999999999999999999999887654 566666431 1 12233444432 234445
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.+.++.+++..+|+.||+++.+|..||++++ || |.|+|+|..||.+.
T Consensus 262 ~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~--G~pvI~~~~~~~~~ 315 (377)
T cd03798 262 TFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMAC--GLPVVATDVGGIPE 315 (377)
T ss_pred EEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhc--CCCEEEecCCChHH
Confidence 568899999999999999999999999999997 77 99999999998764
No 64
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=1.2e-10 Score=93.99 Aligned_cols=104 Identities=13% Similarity=0.251 Sum_probs=78.8
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc-E
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP-I 79 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p-v 79 (140)
++++++++|+.+.||++..++|++++.++.| +.|+.+|... + .+++.+++.+.+ ..+ |
T Consensus 197 ~~~il~~g~l~~~K~~~~li~a~~~l~~~~~-----~~l~i~G~g~-----~----~~~~~~~~~~~~-------~~~~v 255 (371)
T cd04962 197 EKVLIHISNFRPVKRIDDVIRIFAKVRKEVP-----ARLLLVGDGP-----E----RSPAERLARELG-------LQDDV 255 (371)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHhcCC-----ceEEEEcCCc-----C----HHHHHHHHHHcC-------CCceE
Confidence 3679999999999999999999999876532 3577777542 1 233445555432 222 5
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+ .+.. +++..+|+.||++++||..||++++ || |+|+|+|+.||.+
T Consensus 256 ~~-~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~--g~PvI~s~~~~~~ 306 (371)
T cd04962 256 LF-LGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMAC--GVPVVASNAGGIP 306 (371)
T ss_pred EE-ecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHc--CCCEEEeCCCCch
Confidence 54 4543 5789999999999999999999997 77 9999999999975
No 65
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.21 E-value=9.1e-11 Score=90.97 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=80.8
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.++++++|+++.||+...++|++.+.+++|+. .|+.+|... ..+++.+++.+.|. .+.+.
T Consensus 190 ~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~----~l~i~G~~~---------~~~~~~~~~~~~~~-------~~~v~ 249 (353)
T cd03811 190 PVILAVGRLSPQKGFDTLIRAFALLRKEGPDA----RLVILGDGP---------LREELEALAKELGL-------ADRVH 249 (353)
T ss_pred eEEEEEecchhhcChHHHHHHHHHhhhcCCCc----eEEEEcCCc---------cHHHHHHHHHhcCC-------CccEE
Confidence 57999999999999999999999998886655 577777432 12333455555432 23233
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.. +++..+|+.||+++.||..||++++ || |.|+|+|..||.+.
T Consensus 250 ~~g~~--~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~--G~PvI~~~~~~~~e 300 (353)
T cd03811 250 FLGFQ--SNPYPYLKAADLFVLSSRYEGFPNVLLEAMAL--GTPVVATDCPGPRE 300 (353)
T ss_pred Eeccc--CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHh--CCCEEEcCCCChHH
Confidence 35553 4578999999999999999999997 78 99999999998763
No 66
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.21 E-value=1.3e-10 Score=90.98 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=78.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHH-HHhcCCCCCCcccEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVG-RINGRFTTPNWSPIR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~-~IN~~~g~~~~~pv~ 80 (140)
.+|++++|+++.||++..++|++.+.+++|++ .|+.+|..+.. . .. ..... +. + ..+.+
T Consensus 194 ~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~----~l~i~G~~~~~--~---~~----~~~~~~~~----~---~~~~v 253 (365)
T cd03807 194 FLIGIVARLHPQKDHATLLRAAALLLKKFPNA----RLLLVGDGPDR--A---NL----ELLALKEL----G---LEDKV 253 (365)
T ss_pred eEEEEecccchhcCHHHHHHHHHHHHHhCCCe----EEEEecCCcch--h---HH----HHHHHHhc----C---CCceE
Confidence 57899999999999999999999999987765 57777654321 1 11 12222 21 1 22223
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.+ +.+++..+|+.||+++.||..||++++ || |.|+|+|+.||.+.
T Consensus 254 ~~~g--~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~--g~PvI~~~~~~~~e 305 (365)
T cd03807 254 ILLG--ERSDVPALLNALDVFVLSSLSEGFPNVLLEAMAC--GLPVVATDVGDNAE 305 (365)
T ss_pred EEcc--ccccHHHHHHhCCEEEeCCccccCCcHHHHHHhc--CCCEEEcCCCChHH
Confidence 3344 346789999999999999999999997 88 99999999999764
No 67
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.20 E-value=1.3e-10 Score=92.14 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=76.6
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+.+|++++|+.+.||++..++|+.+ ++ +.|+.+|..... +.+...+.+... . -..|.
T Consensus 171 ~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~----~~l~i~G~~~~~---------~~~~~~~~~~~~----~-~~~v~ 227 (335)
T cd03802 171 GDYLLFLGRISPEKGPHLAIRAARR-----AG----IPLKLAGPVSDP---------DYFYREIAPELL----D-GPDIE 227 (335)
T ss_pred CCEEEEEEeeccccCHHHHHHHHHh-----cC----CeEEEEeCCCCH---------HHHHHHHHHhcc----c-CCcEE
Confidence 3578999999999999999998754 23 467777755311 111222222110 0 01244
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCC-CCCCcee-----eecCCceeeecCCCCcc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPL-RDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~-rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+.+.++.+++..+|+.||++++||. .|||+++ || |.|||+|+.||.+
T Consensus 228 -~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~--G~PvI~~~~~~~~ 280 (335)
T cd03802 228 -YLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMAC--GTPVIAFRRGAVP 280 (335)
T ss_pred -EeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhc--CCCEEEeCCCCch
Confidence 4789999999999999999999997 5999986 99 9999999999986
No 68
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.20 E-value=2e-10 Score=91.46 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=81.4
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+|++++|+.+.||++..++|++++. ++.|+.+|.+. ..+++.+++.+.+ ..+-+.
T Consensus 192 ~~i~~~G~~~~~K~~~~li~a~~~l~--------~~~l~i~G~g~---------~~~~~~~~~~~~~-------~~~~V~ 247 (357)
T cd03795 192 PFFLFVGRLVYYKGLDVLLEAAAALP--------DAPLVIVGEGP---------LEAELEALAAALG-------LLDRVR 247 (357)
T ss_pred cEEEEecccccccCHHHHHHHHHhcc--------CcEEEEEeCCh---------hHHHHHHHHHhcC-------CcceEE
Confidence 57999999999999999999999874 56788887541 2234445554432 223234
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCC--CCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPL--RDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~--rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+++..+|+.||++++||. .||++++ +| |.|+|+|..||.+.
T Consensus 248 ~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~--g~Pvi~~~~~~~~~ 302 (357)
T cd03795 248 FLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAF--GKPVISTEIGTGGS 302 (357)
T ss_pred EcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHc--CCCEEecCCCCchh
Confidence 5889999999999999999999996 5999985 78 99999999998764
No 69
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.18 E-value=3.3e-10 Score=87.81 Aligned_cols=108 Identities=23% Similarity=0.340 Sum_probs=85.8
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..|++++|+++.||+...++|+..+.+++|+ +.|+.+|.+ ...+.+.+++.+.+ ..+-+.
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~----~~l~i~G~~---------~~~~~~~~~~~~~~-------~~~~v~ 259 (374)
T cd03801 200 PVILFVGRLVPRKGVDLLLEALAKLRKEYPD----VRLVIVGDG---------PLREELEALAAELG-------LGDRVT 259 (374)
T ss_pred eEEEEecchhhhcCHHHHHHHHHHHhhhcCC----eEEEEEeCc---------HHHHHHHHHHHHhC-------CCcceE
Confidence 5789999999999999999999999988865 467777732 12334444544332 223334
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.++.+|+..+|+.||+++.|+..||++++ || |.|+|++..||.+.
T Consensus 260 ~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~--g~pvI~~~~~~~~~ 312 (374)
T cd03801 260 FLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAA--GLPVVASDVGGIPE 312 (374)
T ss_pred EEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHc--CCcEEEeCCCChhH
Confidence 57899999999999999999999999999987 77 99999999988765
No 70
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.16 E-value=2.4e-10 Score=93.93 Aligned_cols=104 Identities=18% Similarity=0.108 Sum_probs=79.4
Q ss_pred EEEEEecCcc--ccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE
Q psy9724 2 SLVLSVDRLD--YTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79 (140)
Q Consensus 2 ~iil~VdRld--~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv 79 (140)
..|++++|+. ..||+...++|+.++. + ++.|+.+|... ..+++++++++.|- ..-|
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~----~~~l~ivG~g~---------~~~~l~~~~~~~~l------~~~v 238 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTT---G----EWQLHIIGDGS---------DFEKCKAYSRELGI------EQRI 238 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhC---C----CeEEEEEeCCc---------cHHHHHHHHHHcCC------CCeE
Confidence 4789999996 4699999999998762 2 46788888541 13445666766432 1125
Q ss_pred EEEeCCC--CHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecC-CCCcc
Q psy9724 80 RYIYGCI--SQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSA-PSGNR 130 (140)
Q Consensus 80 ~~~~~~~--~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~-~gg~~ 130 (140)
.| .+.+ +.+++..+|+.||+++.||..|||+++ || |+|||+|+ +||.+
T Consensus 239 ~f-~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~--G~Pvv~s~~~~g~~ 294 (359)
T PRK09922 239 IW-HGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSY--GIPCISSDCMSGPR 294 (359)
T ss_pred EE-ecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHc--CCCEEEeCCCCChH
Confidence 44 5543 568999999999999999999999998 88 99999999 88876
No 71
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.15 E-value=4.3e-10 Score=99.66 Aligned_cols=127 Identities=15% Similarity=0.226 Sum_probs=84.3
Q ss_pred CEEEEE-ecCccc-cCCHHHHHHHHHHHHHhCCCCCC-CeEEEEEecCCCCC---------hhHHHHHHHHHHHHHHHHh
Q psy9724 1 MSLVLS-VDRLDY-TKGLVHRLKAFETLLEKHPEHLE-KVTLLQIAVPSRTD---------VKEYQDLKEEMDQLVGRIN 68 (140)
Q Consensus 1 k~iil~-VdRld~-~KGi~~kl~A~~~~L~~~P~~~~-kv~Lvqi~~psr~~---------~~~y~~~~~~l~~lv~~IN 68 (140)
++++++ +||+++ .||++..|+|+.++=..--.-.. +-++.-+..|+... ....+++++.+.++..+|+
T Consensus 297 ~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~ 376 (590)
T cd03793 297 KTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIG 376 (590)
T ss_pred CeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhh
Confidence 467777 799999 99999999999997542211112 22333344555432 1334567788888777777
Q ss_pred cC---------C-----------------------------------------------------CC-CCcccEEEEeC-
Q psy9724 69 GR---------F-----------------------------------------------------TT-PNWSPIRYIYG- 84 (140)
Q Consensus 69 ~~---------~-----------------------------------------------------g~-~~~~pv~~~~~- 84 (140)
.+ . .. .+.--|+|...
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~ 456 (590)
T cd03793 377 KRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEF 456 (590)
T ss_pred hhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccc
Confidence 76 1 00 00111333321
Q ss_pred -----CCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCc
Q psy9724 85 -----CISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGN 129 (140)
Q Consensus 85 -----~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~ 129 (140)
++=-.+...+|+.||+++.||++|||+++ || |+|+|+|+.+|.
T Consensus 457 L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~--G~PvI~t~~~gf 509 (590)
T cd03793 457 LSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVM--GIPSITTNLSGF 509 (590)
T ss_pred cCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHc--CCCEEEccCcch
Confidence 11122456779999999999999999998 89 999999999998
No 72
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.14 E-value=5.4e-10 Score=87.90 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=79.8
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+.++++++|+...||+...++|+..+.+ | ++.|+.+|...... ..... . . ..+-+
T Consensus 191 ~~~i~~~G~~~~~k~~~~li~~~~~l~~--~----~~~l~i~G~~~~~~-----~~~~~----~-~---------~~~~v 245 (359)
T cd03823 191 RLRFGFIGQLTPHKGVDLLLEAFKRLPR--G----DIELVIVGNGLELE-----EESYE----L-E---------GDPRV 245 (359)
T ss_pred ceEEEEEecCccccCHHHHHHHHHHHHh--c----CcEEEEEcCchhhh-----HHHHh----h-c---------CCCeE
Confidence 3578999999999999999999999876 4 35677777543211 11111 1 1 12233
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCC-CCCCcee-----eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPL-RDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~-rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.+.++.+++..+|+.||+++.||. .||++++ || |+|+|+|.+||.+.
T Consensus 246 ~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~--G~Pvi~~~~~~~~e 300 (359)
T cd03823 246 EFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAA--GVPVIASDIGGMAE 300 (359)
T ss_pred EEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHC--CCCEEECCCCCHHH
Confidence 45888999999999999999999997 7999986 88 99999999999764
No 73
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.14 E-value=4.9e-10 Score=87.31 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=79.3
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..|++++|+.+.||++..++|++.+.+++|++ .|+.+|...... + .... ++.+.+. -..|.+
T Consensus 189 ~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~----~l~i~G~~~~~~---~--~~~~---~~~~~~~------~~~v~~ 250 (359)
T cd03808 189 PVFLFVARLLKDKGIDELLEAARILKAKGPNV----RLLLVGDGDEEN---P--AAIL---EIEKLGL------EGRVEF 250 (359)
T ss_pred cEEEEEeccccccCHHHHHHHHHHHHhcCCCe----EEEEEcCCCcch---h--hHHH---HHHhcCC------cceEEE
Confidence 57999999999999999999999998877765 577777553221 1 1111 2222211 123544
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.+. .+++..+|+.||+++.||..||++++ || |.|+|+|..||..
T Consensus 251 -~g~--~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~--G~Pvi~s~~~~~~ 299 (359)
T cd03808 251 -LGF--RDDVPELLAAADVFVLPSYREGLPRVLLEAMAM--GRPVIATDVPGCR 299 (359)
T ss_pred -eec--cccHHHHHHhccEEEecCcccCcchHHHHHHHc--CCCEEEecCCCch
Confidence 444 67899999999999999999999997 78 9999999999875
No 74
>KOG1111|consensus
Probab=99.13 E-value=1.9e-10 Score=96.90 Aligned_cols=108 Identities=17% Similarity=0.273 Sum_probs=86.8
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
..|+.+.||-|.||+++.+..+.++.++||+.+ ++.+|..... .+|+++ -++.+- ..+|+
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vr----fii~GDGPk~--i~lee~-------lEk~~l------~~rV~- 255 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVR----FIIIGDGPKR--IDLEEM-------LEKLFL------QDRVV- 255 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCCee----EEEecCCccc--chHHHH-------HHHhhc------cCceE-
Confidence 468899999999999999999999999999865 7777753211 122223 222211 24554
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+.+.+++++.-..|...||++.||+-|-|+++ .| |-+||++.|||+|-
T Consensus 256 ~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaSc--GL~VVsTrVGGIpe 308 (426)
T KOG1111|consen 256 MLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASC--GLPVVSTRVGGIPE 308 (426)
T ss_pred EecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhC--CCEEEEeecCCccc
Confidence 58999999999999999999999999999997 89 99999999999863
No 75
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.13 E-value=5.9e-10 Score=88.03 Aligned_cols=101 Identities=21% Similarity=0.303 Sum_probs=79.8
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
++|++++|+.+.||+...++|++.+.++ |++ .|+.+|... . . +.+. + ....|.+
T Consensus 198 ~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~----~l~i~G~~~--~-~------~~~~---~---------~~~~v~~ 251 (364)
T cd03814 198 PVLLYVGRLAPEKNLEALLDADLPLRRR-PPV----RLVIVGDGP--A-R------ARLE---A---------RYPNVHF 251 (364)
T ss_pred eEEEEEeccccccCHHHHHHHHHHhhhc-CCc----eEEEEeCCc--h-H------HHHh---c---------cCCcEEE
Confidence 5789999999999999999999999876 655 577777431 1 1 1111 1 0123544
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.++.+++..+|+.||+++.||..||++++ || |.|+|++..||.+.
T Consensus 252 -~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~--g~PvI~~~~~~~~~ 303 (364)
T cd03814 252 -LGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMAS--GLPVVAPDAGGPAD 303 (364)
T ss_pred -EeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHc--CCCEEEcCCCCchh
Confidence 6778999999999999999999999999987 88 99999999999753
No 76
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.06 E-value=2.2e-09 Score=84.47 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=80.0
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+.+|++++|++..||+...++|+.++.+. |+ +.|+.+|... . .+.+.+++..- +...|.
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~----~~l~i~G~~~-----~----~~~~~~~~~~~-------~~~~v~ 278 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDR-PD----IRFLIVGDGP-----E----KEELKELAKAL-------GLDNVT 278 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhc-CC----eEEEEeCCcc-----c----HHHHHHHHHHc-------CCCcEE
Confidence 35789999999999999999999999876 54 4577766432 1 12223332221 224566
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCC---ce-------eeecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEW---SN-------SFSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGm---nL-------vA~~~G~~~v~~~~gg~~~ 131 (140)
+ .+.++.+++..+|+.||+++.|+..|++ +. .|| |.|+|++..||.+.
T Consensus 279 ~-~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~--G~pvi~~~~~~~~~ 336 (394)
T cd03794 279 F-LGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAA--GKPVLASVDGESAE 336 (394)
T ss_pred E-eCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHC--CCcEEEecCCCchh
Confidence 6 5599999999999999999999999965 32 277 99999999999763
No 77
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.97 E-value=1.3e-08 Score=77.39 Aligned_cols=109 Identities=25% Similarity=0.379 Sum_probs=83.7
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.++++++|+++.||+...++|+..+.+..|+ +.++.+|..... .+.+.+++.+.+. ...+.+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~----~~~~~~g~~~~~--------~~~~~~~~~~~~~------~~~v~~ 261 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPD----IKLVIVGDGPER--------REELEKLAKKLGL------EDNVKF 261 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCC----eEEEEEcCCCcc--------HHHHHHHHHHhCC------CCcEEE
Confidence 5899999999999999999999999988776 456666554322 2222334444322 123555
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.++.+++..+|+.||+++.||..||++++ || |+|+|++..||.+.
T Consensus 262 -~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~--g~pvi~~~~~~~~e 313 (381)
T COG0438 262 -LGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAA--GTPVIASDVGGIPE 313 (381)
T ss_pred -ecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhc--CCcEEECCCCChHH
Confidence 7888888899999999999999999999887 78 99999999997653
No 78
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.96 E-value=4e-09 Score=87.79 Aligned_cols=97 Identities=12% Similarity=0.235 Sum_probs=71.6
Q ss_pred EEEEEecCccccCCHHHHH----HHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy9724 2 SLVLSVDRLDYTKGLVHRL----KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl----~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
++|+++||+++.||++..+ .+++.+.+.+|++ .|+.+|... . .+++++... .
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~----~l~ivG~g~----~------~~~~~l~~~----------~ 280 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAA----EFYIVGAKP----S------PAVRALAAL----------P 280 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCc----EEEEECCCC----h------HHHHHhccC----------C
Confidence 5799999999999999887 5666777788876 577777432 1 122222211 1
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCC-CCCCcee-----eecCCceeeecCCC
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPL-RDEWSNS-----FSRSGNFRIKSAPS 127 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~-rdGmnLv-----A~~~G~~~v~~~~g 127 (140)
-|. +.+.++ ++..+|+.||++++||. .||++++ || |+|||+|..|
T Consensus 281 ~V~-~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~--G~PVV~t~~~ 331 (397)
T TIGR03087 281 GVT-VTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAM--AKPVVASPEA 331 (397)
T ss_pred CeE-EeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHc--CCCEEecCcc
Confidence 254 467776 57899999999999996 6999875 99 9999999975
No 79
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.92 E-value=1.1e-08 Score=81.67 Aligned_cols=101 Identities=19% Similarity=0.300 Sum_probs=73.8
Q ss_pred EEEEEecCcc--ccCCHHHHHHHHHHHHHh-CCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy9724 2 SLVLSVDRLD--YTKGLVHRLKAFETLLEK-HPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP 78 (140)
Q Consensus 2 ~iil~VdRld--~~KGi~~kl~A~~~~L~~-~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p 78 (140)
.+++...+.. +.||+...++|++.+.++ +| ++.++.+|..... .. . .. ...
T Consensus 192 ~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~----~~~~~i~G~~~~~-------~~----~---~~--------~~~ 245 (365)
T cd03825 192 KIILFGAVGGTDPRKGFDELIEALKRLAERWKD----DIELVVFGASDPE-------IP----P---DL--------PFP 245 (365)
T ss_pred eEEEEEecCCCccccCHHHHHHHHHHhhhccCC----CeEEEEeCCCchh-------hh----c---cC--------CCc
Confidence 3455555554 489999999999988765 34 4567777654211 00 0 11 112
Q ss_pred EEEEeCCCC-HHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 79 IRYIYGCIS-QDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 79 v~~~~~~~~-~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
+. +.+.++ .+++..+|+.||+++.||..|||+++ || |.|+|+++.||++.
T Consensus 246 v~-~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~--g~PvI~~~~~~~~e 301 (365)
T cd03825 246 VH-YLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALAC--GTPVVAFDVGGIPD 301 (365)
T ss_pred eE-ecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhc--CCCEEEecCCCChh
Confidence 43 467777 88999999999999999999999997 88 99999999999763
No 80
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.6e-08 Score=88.36 Aligned_cols=108 Identities=25% Similarity=0.271 Sum_probs=87.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.++..|+|++..||++..++|++.|+++. + .++.+|.+ + ..+.+.+..+++++..+ ..
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~----~~vilG~g-d------~~le~~~~~la~~~~~~---------~~ 352 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQG--W----QLVLLGTG-D------PELEEALRALASRHPGR---------VL 352 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhC--c----eEEEEecC-c------HHHHHHHHHHHHhcCce---------EE
Confidence 57899999999999999999999999988 3 58888876 1 26788889999987542 23
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee---eecCCceeeecCCCCccc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~~~gg~~~ 131 (140)
+.-..+..--..+|+.||+.++||..||++|+ |-+=||+.|...+||++.
T Consensus 353 ~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLad 405 (487)
T COG0297 353 VVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLAD 405 (487)
T ss_pred EEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccc
Confidence 33344666666789999999999999999998 333399999999999974
No 81
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.88 E-value=2.1e-08 Score=74.22 Aligned_cols=105 Identities=24% Similarity=0.292 Sum_probs=76.0
Q ss_pred EecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCC
Q psy9724 6 SVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGC 85 (140)
Q Consensus 6 ~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~ 85 (140)
+++|+++.||++..++|++++.+++|++ .++.+|.... .+ .. .++..+ .+ ....|.++..-
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~----~~~i~G~~~~---~~--~~----~~~~~~----~~--~~~~v~~~~~~ 169 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDL----KLVIAGDGPE---RE--YL----EELLAA----LL--LLDRVIFLGGL 169 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCe----EEEEEeCCCC---hH--HH----HHHHHh----cC--CcccEEEeCCC
Confidence 6889999999999999999999888765 6777775421 11 11 111111 11 12346554433
Q ss_pred CCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 86 ISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 86 ~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+.++...+++.||+++.||..||++.. +| |.|+|+|+.||.+.
T Consensus 170 ~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~--g~pvi~s~~~~~~e 218 (229)
T cd01635 170 DPEELLALLLAAADVFVLPSLREGFGLVVLEAMAC--GLPVIATDVGGPPE 218 (229)
T ss_pred CcHHHHHHHhhcCCEEEecccccCcChHHHHHHhC--CCCEEEcCCCCcce
Confidence 3566667777779999999999999986 88 99999999999875
No 82
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.68 E-value=2.4e-07 Score=77.86 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=69.7
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCC---CCC----
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRF---TTP---- 74 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~---g~~---- 74 (140)
++++++++. -|+....++||+++.+++|++ .|+.++.. .+ ..+++++++++.+-++ ...
T Consensus 234 ~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~----~liivG~g-----~~---r~~~l~~~~~~~gl~~~~~~~~~~~~ 299 (425)
T PRK05749 234 PVWIAASTH--EGEEELVLDAHRALLKQFPNL----LLILVPRH-----PE---RFKEVEELLKKAGLSYVRRSQGEPPS 299 (425)
T ss_pred cEEEEeCCC--chHHHHHHHHHHHHHHhCCCc----EEEEcCCC-----hh---hHHHHHHHHHhCCCcEEEccCCCCCC
Confidence 467788764 588999999999999989976 46665532 11 1144555665533221 100
Q ss_pred CcccEEEEeCCCCHHHHHHHHHHcCEEEE-CCCCCCCcee-----eecCCceeeecCC
Q psy9724 75 NWSPIRYIYGCISQDELASFYRDAAVALV-TPLRDEWSNS-----FSRSGNFRIKSAP 126 (140)
Q Consensus 75 ~~~pv~~~~~~~~~~el~aly~~ADv~vv-ts~rdGmnLv-----A~~~G~~~v~~~~ 126 (140)
.-..| ++.+ +.+|+..+|+.||++++ +|+.||++++ || |.|||++..
T Consensus 300 ~~~~v-~l~~--~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~--G~PVI~g~~ 352 (425)
T PRK05749 300 ADTDV-LLGD--TMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAF--GVPVISGPH 352 (425)
T ss_pred CCCcE-EEEe--cHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHh--CCCEEECCC
Confidence 00122 2222 46899999999999766 6777887765 88 999998754
No 83
>KOG0853|consensus
Probab=98.54 E-value=1.1e-06 Score=76.81 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=94.6
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEec--CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAV--PSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~--psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv 79 (140)
.++.++.|+.+-||+...|.||..+...-|+-.-.-..+++++ .+.+...+..++..++.+++++-+. + ...
T Consensus 274 ~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l-~-----g~~ 347 (495)
T KOG0853|consen 274 RFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDL-L-----GQF 347 (495)
T ss_pred eEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCc-c-----Cce
Confidence 4678899999999999999999999988876222234444444 2444455556778888899987422 1 235
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
+++....++.+.+.+++.+.++..||-.|-||+| || |.||+|++-||..
T Consensus 348 v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~--glPvvAt~~GGP~ 401 (495)
T KOG0853|consen 348 VWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMAC--GLPVVATNNGGPA 401 (495)
T ss_pred EEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhc--CCCEEEecCCCce
Confidence 5667777888889999999999999999999999 99 9999999999964
No 84
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.26 E-value=5.4e-06 Score=58.41 Aligned_cols=94 Identities=29% Similarity=0.458 Sum_probs=63.1
Q ss_pred EEEEEecCccccCCHHHHHH-HHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLK-AFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~-A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
.+|++.+++...||+...++ |++++.+++|+ +.|..+|.... ++.++ .. ..|.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~----~~l~i~G~~~~-----------~l~~~-~~----------~~v~ 56 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPD----IELIIIGNGPD-----------ELKRL-RR----------PNVR 56 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTT----EEEEEECESS------------HHCCH-HH----------CTEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcC----EEEEEEeCCHH-----------HHHHh-cC----------CCEE
Confidence 46889999999999999999 99999999996 46777776321 12333 11 2465
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCC-CCCCcee-----eecCCceeeecCC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPL-RDEWSNS-----FSRSGNFRIKSAP 126 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~-rdGmnLv-----A~~~G~~~v~~~~ 126 (140)
+ .+.+ +|+..+++.||+++.|+. .+++... ++ |.|+|++..
T Consensus 57 ~-~g~~--~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~--G~pvi~~~~ 103 (135)
T PF13692_consen 57 F-HGFV--EELPEILAAADVGLIPSRFNEGFPNKLLEAMAA--GKPVIASDN 103 (135)
T ss_dssp E-E-S---HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCT--T--EEEEHH
T ss_pred E-cCCH--HHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHh--CCCEEECCc
Confidence 5 5566 689999999999999884 6677554 77 999999988
No 85
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.21 E-value=8.2e-06 Score=67.76 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=68.4
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+++|+++|+++..+++. .+..+.+.+|++ .|+.+|.... . .+ . . ++ .. ...|+
T Consensus 205 ~~~i~y~G~l~~~~d~~----ll~~la~~~p~~----~~vliG~~~~-~-~~---~-~---~~----~~------~~nV~ 257 (373)
T cd04950 205 RPVIGYYGAIAEWLDLE----LLEALAKARPDW----SFVLIGPVDV-S-ID---P-S---AL----LR------LPNVH 257 (373)
T ss_pred CCEEEEEeccccccCHH----HHHHHHHHCCCC----EEEEECCCcC-c-cC---h-h---Hh----cc------CCCEE
Confidence 35899999999955543 334445678877 5777775411 0 11 1 1 11 00 12365
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCC-----Cce-----eeecCCceeeecCCCCcccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDE-----WSN-----SFSRSGNFRIKSAPSGNRTH 132 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdG-----mnL-----vA~~~G~~~v~~~~gg~~~~ 132 (140)
| .+.++++++.++|+.||++++|+..+. +.+ .|| |.|||+|+.++...+
T Consensus 258 ~-~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~--G~PVVat~~~~~~~~ 316 (373)
T cd04950 258 Y-LGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAA--GKPVVATPLPEVRRY 316 (373)
T ss_pred E-eCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhcc--CCCEEecCcHHHHhh
Confidence 5 789999999999999999999987543 333 299 999999987766544
No 86
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=97.99 E-value=5.9e-05 Score=62.92 Aligned_cols=97 Identities=13% Similarity=0.148 Sum_probs=64.2
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHh----CCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCc
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEK----HPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNW 76 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~----~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~ 76 (140)
+++|+.++|....|++...++++..++.. .|+ +.++.+++.. + .+++++++... +
T Consensus 206 ~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~----~~~~vi~G~~----~---~~~~~L~~~~~------~---- 264 (382)
T PLN02605 206 LPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPI----GQVVVICGRN----K---KLQSKLESRDW------K---- 264 (382)
T ss_pred CcEEEEECCCcccccHHHHHHHHHHhhccccccCCC----ceEEEEECCC----H---HHHHHHHhhcc------c----
Confidence 36789999999999999999999887632 233 3444455432 1 23344443311 1
Q ss_pred ccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee----eecCCceeeecCC
Q psy9724 77 SPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS----FSRSGNFRIKSAP 126 (140)
Q Consensus 77 ~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv----A~~~G~~~v~~~~ 126 (140)
..|. +.+.++ ++..||++||+++..| |-+.+ || |.|+|.+..
T Consensus 265 ~~v~-~~G~~~--~~~~l~~aaDv~V~~~---g~~ti~EAma~--g~PvI~~~~ 310 (382)
T PLN02605 265 IPVK-VRGFVT--NMEEWMGACDCIITKA---GPGTIAEALIR--GLPIILNGY 310 (382)
T ss_pred CCeE-EEeccc--cHHHHHHhCCEEEECC---CcchHHHHHHc--CCCEEEecC
Confidence 1344 456654 6999999999999866 32232 89 999999984
No 87
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=97.84 E-value=0.0002 Score=63.14 Aligned_cols=108 Identities=13% Similarity=0.199 Sum_probs=82.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCC-c----
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPN-W---- 76 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~-~---- 76 (140)
.|-+++||+ +-|-+...++|+.++.+.+|+. .|...|..+. . ++.+.++++++++|.+|+... +
T Consensus 322 ~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~----~L~~~gy~~~---~---~~~~~l~~~i~~~~~~~~~~~~~~~~~ 390 (519)
T TIGR03713 322 EIGFWIDGL-SDEELQQILQQLLQYILKNPDY----ELKILTYNND---N---DITQLLEDILEQINEEYNQDKNFFSLS 390 (519)
T ss_pred EEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCe----EEEEEEecCc---h---hHHHHHHHHHHHHHhhhchhhhccccc
Confidence 466777799 9999999999999999999986 4666665531 1 346677788888887754311 0
Q ss_pred --------------c---cEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee----eecCCceee
Q psy9724 77 --------------S---PIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS----FSRSGNFRI 122 (140)
Q Consensus 77 --------------~---pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv----A~~~G~~~v 122 (140)
. ..+.+.+-.+.+++..-|.-|.+++.+|..||+++. +. |.|+|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~--GiPqI 455 (519)
T TIGR03713 391 EQDENQPILQTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISA--GIPQI 455 (519)
T ss_pred hhhhhhhcccchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHc--CCCee
Confidence 0 234456667778999999999999999999999853 66 99999
No 88
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.63 E-value=0.00052 Score=55.79 Aligned_cols=101 Identities=13% Similarity=0.160 Sum_probs=66.0
Q ss_pred EEEEEecCccc---cCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy9724 2 SLVLSVDRLDY---TKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP 78 (140)
Q Consensus 2 ~iil~VdRld~---~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p 78 (140)
.+++..+|... .||+...++|++++.+. ++.++-.+.+ ..++++++.+.+.+. ....
T Consensus 200 ~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~------~~~vi~~~~~---------~~~~~l~~~~~~~~~-----~~~~ 259 (363)
T cd03786 200 YILVTLHRVENVDDGEQLEEILEALAELAEE------DVPVVFPNHP---------RTRPRIREAGLEFLG-----HHPN 259 (363)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHHHHhc------CCEEEEECCC---------ChHHHHHHHHHhhcc-----CCCC
Confidence 36678888775 79999999999988543 2334332322 112344444544321 0123
Q ss_pred EEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee--eecCCceeeecCCC
Q psy9724 79 IRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSAPS 127 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~~g 127 (140)
|. +.+....+++..+|+.||+++.+|- |+-.- +| |+|+|.+...
T Consensus 260 v~-~~~~~~~~~~~~l~~~ad~~v~~Sg--gi~~Ea~~~--g~PvI~~~~~ 305 (363)
T cd03786 260 VL-LISPLGYLYFLLLLKNADLVLTDSG--GIQEEASFL--GVPVLNLRDR 305 (363)
T ss_pred EE-EECCcCHHHHHHHHHcCcEEEEcCc--cHHhhhhhc--CCCEEeeCCC
Confidence 54 4566778999999999999999985 54332 56 9999998653
No 89
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.61 E-value=0.00071 Score=55.69 Aligned_cols=103 Identities=10% Similarity=0.132 Sum_probs=66.9
Q ss_pred EEEEecCcc-ccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 3 LVLSVDRLD-YTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 3 iil~VdRld-~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
+++...|.+ .-||+...++|++++.+++|++ .++.++.|.. +.+++ +.+.++ . ...|+
T Consensus 200 vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~----~~vi~~~~~~-------~~~~~---~~~~~~----~--~~~v~- 258 (365)
T TIGR00236 200 ILLTLHRRENVGEPLENIFKAIREIVEEFEDV----QIVYPVHLNP-------VVREP---LHKHLG----D--SKRVH- 258 (365)
T ss_pred EEEecCchhhhhhHHHHHHHHHHHHHHHCCCC----EEEEECCCCh-------HHHHH---HHHHhC----C--CCCEE-
Confidence 344444543 4489999999999999988876 3554444421 11222 222221 1 12354
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCce--eeecCCceeeec-CCCCcc
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSN--SFSRSGNFRIKS-APSGNR 130 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnL--vA~~~G~~~v~~-~~gg~~ 130 (140)
+.+.++..++..+|+.||+++.+| .|+-+ .|| |.|+|.+ .+||.+
T Consensus 259 ~~~~~~~~~~~~~l~~ad~vv~~S--g~~~~EA~a~--g~PvI~~~~~~~~~ 306 (365)
T TIGR00236 259 LIEPLEYLDFLNLAANSHLILTDS--GGVQEEAPSL--GKPVLVLRDTTERP 306 (365)
T ss_pred EECCCChHHHHHHHHhCCEEEECC--hhHHHHHHHc--CCCEEECCCCCCCh
Confidence 467889999999999999998877 33322 278 9999996 667654
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.45 E-value=0.00028 Score=58.00 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=57.3
Q ss_pred cCccccCC-HHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCC
Q psy9724 8 DRLDYTKG-LVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCI 86 (140)
Q Consensus 8 dRld~~KG-i~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~ 86 (140)
.|....|+ ++..++|++.+.+++|++ .++.++.+. ..++++++++.+. + +.. +.++.
T Consensus 195 sr~~~~~~~~~~l~~a~~~l~~~~~~~----~~ii~~~~~--------~~~~~~~~~~~~~----~--~~~-v~~~~--- 252 (380)
T PRK00025 195 SRGQEIKRLLPPFLKAAQLLQQRYPDL----RFVLPLVNP--------KRREQIEEALAEY----A--GLE-VTLLD--- 252 (380)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCe----EEEEecCCh--------hhHHHHHHHHhhc----C--CCC-eEEEc---
Confidence 36655544 678889999998888865 455554321 1233444454432 0 111 44432
Q ss_pred CHHHHHHHHHHcCEEEECCCCCCCcee---eecCCceeeec
Q psy9724 87 SQDELASFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKS 124 (140)
Q Consensus 87 ~~~el~aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~ 124 (140)
+++..+|+.||+++.+| |.+.. || |.|+|.+
T Consensus 253 --~~~~~~~~~aDl~v~~s---G~~~lEa~a~--G~PvI~~ 286 (380)
T PRK00025 253 --GQKREAMAAADAALAAS---GTVTLELALL--KVPMVVG 286 (380)
T ss_pred --ccHHHHHHhCCEEEECc---cHHHHHHHHh--CCCEEEE
Confidence 36899999999999988 77765 78 9999977
No 91
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=97.40 E-value=0.00095 Score=56.07 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=59.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+++..|++...||+...++++ ++..|++ .++.+++.+ + ++.+++.+.. +. ...|+
T Consensus 204 ~ilv~~G~lg~~k~~~~li~~~---~~~~~~~----~~vvv~G~~----~---~l~~~l~~~~---~~------~~~v~- 259 (391)
T PRK13608 204 TILMSAGAFGVSKGFDTMITDI---LAKSANA----QVVMICGKS----K---ELKRSLTAKF---KS------NENVL- 259 (391)
T ss_pred EEEEECCCcccchhHHHHHHHH---HhcCCCc----eEEEEcCCC----H---HHHHHHHHHh---cc------CCCeE-
Confidence 3567889999999999998875 4445543 566665432 1 2233333322 11 11343
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee---eecCCceeeecCC
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKSAP 126 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~~~ 126 (140)
+.+.. +++..+|+.||+++..| .|+-+. || |.|+|.+..
T Consensus 260 ~~G~~--~~~~~~~~~aDl~I~k~--gg~tl~EA~a~--G~PvI~~~~ 301 (391)
T PRK13608 260 ILGYT--KHMNEWMASSQLMITKP--GGITISEGLAR--CIPMIFLNP 301 (391)
T ss_pred EEecc--chHHHHHHhhhEEEeCC--chHHHHHHHHh--CCCEEECCC
Confidence 34554 56899999999998744 344332 78 999999964
No 92
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=97.28 E-value=0.0021 Score=53.05 Aligned_cols=97 Identities=10% Similarity=0.223 Sum_probs=61.8
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~ 82 (140)
+++..+++...|++...++++.+ .|+ +.++.+++.. . .+++++++++++.+ ..|++
T Consensus 205 il~~~G~~~~~k~~~~li~~l~~----~~~----~~~viv~G~~----~---~~~~~l~~~~~~~~--------~~v~~- 260 (380)
T PRK13609 205 LLIMAGAHGVLGNVKELCQSLMS----VPD----LQVVVVCGKN----E---ALKQSLEDLQETNP--------DALKV- 260 (380)
T ss_pred EEEEcCCCCCCcCHHHHHHHHhh----CCC----cEEEEEeCCC----H---HHHHHHHHHHhcCC--------CcEEE-
Confidence 55667888888999888877642 354 4566665432 1 34556666665421 23655
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCCCCCce---eeecCCceeeecC-CCCc
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLRDEWSN---SFSRSGNFRIKSA-PSGN 129 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~rdGmnL---vA~~~G~~~v~~~-~gg~ 129 (140)
.+.+ +++..+|++||+++.. ..|+-+ .|| |+|+|.+. .+|.
T Consensus 261 ~g~~--~~~~~l~~~aD~~v~~--~gg~t~~EA~a~--g~PvI~~~~~~g~ 305 (380)
T PRK13609 261 FGYV--ENIDELFRVTSCMITK--PGGITLSEAAAL--GVPVILYKPVPGQ 305 (380)
T ss_pred Eech--hhHHHHHHhccEEEeC--CCchHHHHHHHh--CCCEEECCCCCCc
Confidence 4555 3578899999988742 235444 288 99999986 5653
No 93
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.24 E-value=0.0012 Score=53.22 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=59.6
Q ss_pred EEEEEecCccccCCHHHHH-HHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRL-KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl-~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
++|+.++|....|++...+ .|++++.+. ++ .++.++... + .+++++.+.+. +...++
T Consensus 180 ~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~----~~~~~~g~~----~-----~~~l~~~~~~~-------~l~~~v 237 (348)
T TIGR01133 180 PTILVLGGSQGAKILNELVPKALAKLAEK--GI----QIVHQTGKN----D-----LEKVKNVYQEL-------GIEAIV 237 (348)
T ss_pred eEEEEECCchhHHHHHHHHHHHHHHHhhc--Cc----EEEEECCcc----h-----HHHHHHHHhhC-------CceEEe
Confidence 5688899888888876544 788777543 22 233333221 1 13445555442 122333
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee---eecCCceeeecCCCCccc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~~~gg~~~ 131 (140)
.+. .. ++..+|+.||+++.+| .|..+. || |.|+|++..+|...
T Consensus 238 ~~~---~~-~~~~~l~~ad~~v~~~--g~~~l~Ea~~~--g~Pvv~~~~~~~~~ 283 (348)
T TIGR01133 238 TFI---DE-NMAAAYAAADLVISRA--GASTVAELAAA--GVPAILIPYPYAAD 283 (348)
T ss_pred cCc---cc-CHHHHHHhCCEEEECC--ChhHHHHHHHc--CCCEEEeeCCCCcc
Confidence 223 22 6789999999999865 233342 77 99999998866443
No 94
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=97.02 E-value=0.011 Score=53.33 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=72.2
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHH--hCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLE--KHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~--~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+|..|.|+..-||.++.+.+++++++ ++|+ ..+++|..|.....+.. -+++.+.+.+++.+ -.|.. -|.
T Consensus 391 ~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~--~pvq~V~~Gka~p~d~~-gk~~i~~i~~la~~--~~~~~----kv~ 461 (601)
T TIGR02094 391 TIGFARRFATYKRADLIFRDLERLARILNNPE--RPVQIVFAGKAHPADGE-GKEIIQRIVEFSKR--PEFRG----RIV 461 (601)
T ss_pred EEEEEEcchhhhhHHHHHHHHHHHHHHhhCCC--CCeEEEEEEecCcccch-HHHHHHHHHHHHhc--ccCCC----CEE
Confidence 78899999999999999999999986 6666 35778887776433321 13556666666653 00211 355
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEE-CCC-CCCCcee---eecCCceeeec
Q psy9724 81 YIYGCISQDELASFYRDAAVALV-TPL-RDEWSNS---FSRSGNFRIKS 124 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vv-ts~-rdGmnLv---A~~~G~~~v~~ 124 (140)
|+. ..+.+-=--++..||+.+. ||. .|..++. |.+-|-...++
T Consensus 462 f~~-~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv 509 (601)
T TIGR02094 462 FLE-NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSI 509 (601)
T ss_pred EEc-CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeec
Confidence 544 3344444568999999999 555 6776664 44334444443
No 95
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.91 E-value=0.005 Score=49.65 Aligned_cols=97 Identities=13% Similarity=0.172 Sum_probs=57.9
Q ss_pred EEEEEecCccccCCHHHHH-HHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRL-KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl-~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
++|+.+++....|+....+ .|++.+. + + ++.++-++++. + .+++.+.+++. + .-|+
T Consensus 182 ~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~----~~~~~~i~G~g-----~----~~~l~~~~~~~----~----~~v~ 238 (350)
T cd03785 182 PTLLVFGGSQGARAINEAVPEALAELL-R-K----RLQVIHQTGKG-----D----LEEVKKAYEEL----G----VNYE 238 (350)
T ss_pred eEEEEECCcHhHHHHHHHHHHHHHHhh-c-c----CeEEEEEcCCc-----c----HHHHHHHHhcc----C----CCeE
Confidence 5677888877778876654 6666653 2 2 23333333331 1 12233344332 1 1244
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee---eecCCceeeecCCCC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKSAPSG 128 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~~~gg 128 (140)
+ .+.+ +++..+|+.||+++.+| .|+.+. ++ |.|+|++..+|
T Consensus 239 ~-~g~~--~~~~~~l~~ad~~v~~s--g~~t~~Eam~~--G~Pvv~~~~~~ 282 (350)
T cd03785 239 V-FPFI--DDMAAAYAAADLVISRA--GASTVAELAAL--GLPAILIPLPY 282 (350)
T ss_pred E-eehh--hhHHHHHHhcCEEEECC--CHhHHHHHHHh--CCCEEEeecCC
Confidence 3 4444 78899999999999866 243332 67 99999988765
No 96
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.87 E-value=0.0052 Score=50.16 Aligned_cols=96 Identities=15% Similarity=0.096 Sum_probs=61.9
Q ss_pred EEEEEecCccccCCHHHHH-HHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 2 SLVLSVDRLDYTKGLVHRL-KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl-~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
++|+.+++....|++...+ +|++++.+ .| ..++++|... .+++.+ ..+ . + .. |+
T Consensus 184 ~~i~~~gg~~~~~~~~~~l~~a~~~~~~-~~-----~~~~~~G~g~------~~~~~~----~~~-~----~---~~-v~ 238 (357)
T PRK00726 184 PTLLVVGGSQGARVLNEAVPEALALLPE-AL-----QVIHQTGKGD------LEEVRA----AYA-A----G---IN-AE 238 (357)
T ss_pred eEEEEECCcHhHHHHHHHHHHHHHHhhh-Cc-----EEEEEcCCCc------HHHHHH----Hhh-c----C---Cc-EE
Confidence 5788899998889887777 88887743 23 3456656442 112222 221 1 1 12 44
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCce---eeecCCceeeecCCCCc
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSN---SFSRSGNFRIKSAPSGN 129 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnL---vA~~~G~~~v~~~~gg~ 129 (140)
+ .+.+ ++...+|+.||+++.+|- ++.+ .|| |.|+|.+..||.
T Consensus 239 ~-~g~~--~~~~~~~~~~d~~i~~~g--~~~~~Ea~~~--g~Pvv~~~~~~~ 283 (357)
T PRK00726 239 V-VPFI--DDMAAAYAAADLVICRAG--ASTVAELAAA--GLPAILVPLPHA 283 (357)
T ss_pred E-eehH--hhHHHHHHhCCEEEECCC--HHHHHHHHHh--CCCEEEecCCCC
Confidence 3 4444 678899999999998772 3333 288 999999987654
No 97
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.64 E-value=0.0091 Score=50.34 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=58.0
Q ss_pred EecCccc-cCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeC
Q psy9724 6 SVDRLDY-TKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYG 84 (140)
Q Consensus 6 ~VdRld~-~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~ 84 (140)
+..|... .|+++..++|++.+.+.+|+++ ++..+.+. .. .+.++++.++. +. +. .+.++.+
T Consensus 198 ~GSR~aei~k~~~~ll~a~~~l~~~~p~~~----~vi~~~~~-~~-------~~~~~~~~~~~----~~-~~-~v~~~~~ 259 (385)
T TIGR00215 198 PGSRGSEVEKLFPLFLKAAQLLEQQEPDLR----RVLPVVNF-KR-------RLQFEQIKAEY----GP-DL-QLHLIDG 259 (385)
T ss_pred CCCCHHHHHHhHHHHHHHHHHHHHhCCCeE----EEEEeCCc-hh-------HHHHHHHHHHh----CC-CC-cEEEECc
Confidence 4458887 6899999999999999999763 43333331 11 12223333332 21 11 3433332
Q ss_pred CCCHHHHHHHHHHcCEEEECCCCCCCcee---eecCCceeeecC
Q psy9724 85 CISQDELASFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKSA 125 (140)
Q Consensus 85 ~~~~~el~aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~~ 125 (140)
+...+|++||+++.+| |...+ || |+|+|.+-
T Consensus 260 -----~~~~~l~aADl~V~~S---Gt~tlEa~a~--G~P~Vv~y 293 (385)
T TIGR00215 260 -----DARKAMFAADAALLAS---GTAALEAALI--KTPMVVGY 293 (385)
T ss_pred -----hHHHHHHhCCEEeecC---CHHHHHHHHc--CCCEEEEE
Confidence 2346999999999999 65554 88 99998873
No 98
>KOG1387|consensus
Probab=96.64 E-value=0.021 Score=48.84 Aligned_cols=116 Identities=15% Similarity=0.253 Sum_probs=90.6
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCC--CCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPE--HLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~--~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv 79 (140)
..+++++.+-|-|.-. .|+-++-++.+.|. ....+.|+.+|+- |.+ +|+ +.-..+++++.+++-. ..|
T Consensus 270 ~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGSc-Rne-eD~-ervk~Lkd~a~~L~i~------~~v 339 (465)
T KOG1387|consen 270 NQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSC-RNE-EDE-ERVKSLKDLAEELKIP------KHV 339 (465)
T ss_pred eEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEecc-CCh-hhH-HHHHHHHHHHHhcCCc------cce
Confidence 3689999999999988 78888889999998 5557888776654 332 333 4457778888887541 236
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-----eecCCceeeecCCCCcc
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~ 130 (140)
.| .-.++.+++.-++..|-+.+-|=+.|-|++- |. |...|+-+-||.+
T Consensus 340 ~F-~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAA--GlIpi~h~SgGP~ 392 (465)
T KOG1387|consen 340 QF-EKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAA--GLIPIVHNSGGPL 392 (465)
T ss_pred EE-EecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhc--CceEEEeCCCCCc
Confidence 55 6688999999999999999999999999883 77 8888888888854
No 99
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.44 E-value=0.011 Score=48.55 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=36.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCCC-------CC--Cce-------eeecCCceeeecCCCCcc
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPLR-------DE--WSN-------SFSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~r-------dG--mnL-------vA~~~G~~~v~~~~gg~~ 130 (140)
.|.| .+.++.+|+..+|+. |++++..-. +. +|. .|| |.|||++..||++
T Consensus 208 ~V~f-~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~--G~PVI~~~~~~~~ 272 (333)
T PRK09814 208 NISY-KGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAA--GLPVIVWSKAAIA 272 (333)
T ss_pred CeEE-ecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHC--CCCEEECCCccHH
Confidence 3554 789999999999988 877774321 21 222 499 9999999999876
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=96.32 E-value=0.012 Score=53.09 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=27.3
Q ss_pred HHHHHHHcCEEEECCCCCCCcee---eecCCceeeecCCCC
Q psy9724 91 LASFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKSAPSG 128 (140)
Q Consensus 91 l~aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~~~gg 128 (140)
..-+.+.+|.+++||.||+++.+ ++..|.|.|.|+-.|
T Consensus 463 Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsG 503 (633)
T PF05693_consen 463 YYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSG 503 (633)
T ss_dssp HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBH
T ss_pred HHHHhccCceeeeccccccccCChHHHhhcCCceeeccchh
Confidence 45578899999999999999998 333399999999887
No 101
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=96.03 E-value=0.025 Score=49.06 Aligned_cols=85 Identities=12% Similarity=0.249 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHH
Q psy9724 17 VHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 96 (140)
Q Consensus 17 ~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~ 96 (140)
...++|++++.+..|++. +-||.++ ++..++.++ ++ | ..++.+. ......+..+|.
T Consensus 291 s~~I~~i~~Lv~~lPd~~-----f~Iga~t--------e~s~kL~~L-~~----y-----~nvvly~-~~~~~~l~~ly~ 346 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYH-----FHIAALT--------EMSSKLMSL-DK----Y-----DNVKLYP-NITTQKIQELYQ 346 (438)
T ss_pred HHHHHHHHHHHHhCCCcE-----EEEEecC--------cccHHHHHH-Hh----c-----CCcEEEC-CcChHHHHHHHH
Confidence 788999999999999974 4445543 122444555 33 2 2354434 445666889999
Q ss_pred HcCEEEECCCCCCCcee---eecCCceeeecC
Q psy9724 97 DAAVALVTPLRDEWSNS---FSRSGNFRIKSA 125 (140)
Q Consensus 97 ~ADv~vvts~rdGmnLv---A~~~G~~~v~~~ 125 (140)
.||+.+.+|..||+++. |...|.|+++=.
T Consensus 347 ~~dlyLdin~~e~~~~al~eA~~~G~pI~afd 378 (438)
T TIGR02919 347 TCDIYLDINHGNEILNAVRRAFEYNLLILGFE 378 (438)
T ss_pred hccEEEEccccccHHHHHHHHHHcCCcEEEEe
Confidence 99999999999999997 777799999744
No 102
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=95.11 E-value=0.31 Score=45.36 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=66.6
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHH--hCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLE--KHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~--~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
+|.++-|+..-||..+.++.++++.+ ++|+ ..+++|..|.+.-.+.. -+++.+.+.+++.+- +|.. -|.
T Consensus 480 tigfarRfa~YKR~~Lil~dl~rl~~il~~~~--~pvQ~IfaGKAhP~d~~-gK~iIk~i~~~a~~p--~~~~----kVv 550 (778)
T cd04299 480 TIGFARRFATYKRATLLLRDPERLKRLLNDPE--RPVQFIFAGKAHPADEP-GKELIQEIVEFSRRP--EFRG----RIV 550 (778)
T ss_pred EEeeeecchhhhhHHHHHHHHHHHHHHhhCCC--CCeEEEEEEecCccchH-HHHHHHHHHHHHhCc--CCCC----cEE
Confidence 68889999999999999999999855 3455 35778777765433321 135566666665410 2211 355
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCC--CCCCce
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPL--RDEWSN 112 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~--rdGmnL 112 (140)
|+. ..+.+-=.-++..+||.+.||. .|.-++
T Consensus 551 fle-~Yd~~lA~~LvaG~DvwLn~prrp~EAsGT 583 (778)
T cd04299 551 FLE-DYDMALARHLVQGVDVWLNTPRRPLEASGT 583 (778)
T ss_pred EEc-CCCHHHHHHHHhhhhhcccCCCCCCCCCcc
Confidence 554 3344444568999999999999 665444
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=94.92 E-value=0.18 Score=43.78 Aligned_cols=90 Identities=23% Similarity=0.194 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCc-------ccEEEEeCCCCHHH
Q psy9724 18 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNW-------SPIRYIYGCISQDE 90 (140)
Q Consensus 18 ~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~-------~pv~~~~~~~~~~e 90 (140)
..+.++.++++++|+. ++ |-+| |+ . +=-..+++++.+.|-+|+.-.+ .+|... .+.-|
T Consensus 246 i~l~~~~~l~~~~~~~-----ll-IlVP-RH--p---ERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~---DtmGE 310 (419)
T COG1519 246 IILDAHQALKKQFPNL-----LL-ILVP-RH--P---ERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLG---DTMGE 310 (419)
T ss_pred HHHHHHHHHHhhCCCc-----eE-EEec-CC--h---hhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEE---ecHhH
Confidence 3678999999999985 33 3345 21 2 2246778899998877754222 244332 28899
Q ss_pred HHHHHHHcCEEEECCC---CCCCcee---eecCCceeeec
Q psy9724 91 LASFYRDAAVALVTPL---RDEWSNS---FSRSGNFRIKS 124 (140)
Q Consensus 91 l~aly~~ADv~vvts~---rdGmnLv---A~~~G~~~v~~ 124 (140)
+..||+.|||+.|--. ..|-|+. +| |+|+|..
T Consensus 311 L~l~y~~adiAFVGGSlv~~GGHN~LEpa~~--~~pvi~G 348 (419)
T COG1519 311 LGLLYGIADIAFVGGSLVPIGGHNPLEPAAF--GTPVIFG 348 (419)
T ss_pred HHHHHhhccEEEECCcccCCCCCChhhHHHc--CCCEEeC
Confidence 9999999999998433 5688987 67 9999874
No 104
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.72 E-value=0.22 Score=41.40 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEecCCCCCh---hHHHHHHHHHHHHHHHHhcCC--C----C-----------C-Cccc
Q psy9724 20 LKAFETLLEKHPEHLEKVTLLQIAVPSRTDV---KEYQDLKEEMDQLVGRINGRF--T----T-----------P-NWSP 78 (140)
Q Consensus 20 l~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~---~~y~~~~~~l~~lv~~IN~~~--g----~-----------~-~~~p 78 (140)
-+|-+++..+.+.+.++.+.|-||++++... ++...+.+.+.+++++-+..+ . | . ...-
T Consensus 131 ~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~ 210 (311)
T PF06258_consen 131 AEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPG 210 (311)
T ss_pred HHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCc
Confidence 3556677777888888889999999987643 334456666666665544111 0 0 1 1222
Q ss_pred EEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee--eecCCceeeecCCCC
Q psy9724 79 IRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSAPSG 128 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~~gg 128 (140)
+.++ ..-+..=+.+++..||.++||. |..|++ ||--|.||.-=...+
T Consensus 211 ~~~~-~~~~~nPy~~~La~ad~i~VT~--DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 211 VYIW-DGTGENPYLGFLAAADAIVVTE--DSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred eEEe-cCCCCCcHHHHHHhCCEEEEcC--ccHHHHHHHHHcCCCEEEecCCC
Confidence 4333 4444556889999999999996 788887 888899997766666
No 105
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.36 Score=35.98 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=60.1
Q ss_pred CccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCH
Q psy9724 9 RLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQ 88 (140)
Q Consensus 9 Rld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~ 88 (140)
-+...++...-+.++..++++| ++..|.+|-|-.-+..++. ..+.+++.+.++..+|+ -||++....++-
T Consensus 31 ~i~~~~~~~~~~~~l~~li~~~-----~~~~vVVGlP~~m~g~~~~-~~~~~~~f~~~L~~r~~----lpv~l~DERltT 100 (141)
T COG0816 31 TIKRKNGKPQDFNALLKLVKEY-----QVDTVVVGLPLNMDGTEGP-RAELARKFAERLKKRFN----LPVVLWDERLST 100 (141)
T ss_pred hheeccccHhhHHHHHHHHHHh-----CCCEEEEecCcCCCCCcch-hHHHHHHHHHHHHHhcC----CCEEEEcCccCH
Confidence 3444444445667777777776 6789999999876655554 66788999999999998 589999888887
Q ss_pred HHHHHHHHHcC
Q psy9724 89 DELASFYRDAA 99 (140)
Q Consensus 89 ~el~aly~~AD 99 (140)
.+=...+..+|
T Consensus 101 v~A~~~L~~~~ 111 (141)
T COG0816 101 VEAERMLIEAG 111 (141)
T ss_pred HHHHHHHHHcC
Confidence 77666666544
No 106
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=93.64 E-value=1.1 Score=36.17 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~ 80 (140)
++|++..|..|+.+.....++|++++. +++ .+..+.+++... .+++++.++. + ..+.
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~----~i~vv~G~~~~~-------~~~l~~~~~~-~--------~~i~ 227 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ---INI----SITLVTGSSNPN-------LDELKKFAKE-Y--------PNII 227 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc---cCc----eEEEEECCCCcC-------HHHHHHHHHh-C--------CCEE
Confidence 368999999999886667777776542 222 233345554322 2344555543 1 1233
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee----eecCCceeeecCC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS----FSRSGNFRIKSAP 126 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv----A~~~G~~~v~~~~ 126 (140)
. .+ ..+++..+|+.||+++.. -| +.+ |+ |.|+|.-..
T Consensus 228 ~-~~--~~~~m~~lm~~aDl~Is~---~G-~T~~E~~a~--g~P~i~i~~ 268 (279)
T TIGR03590 228 L-FI--DVENMAELMNEADLAIGA---AG-STSWERCCL--GLPSLAICL 268 (279)
T ss_pred E-Ee--CHHHHHHHHHHCCEEEEC---Cc-hHHHHHHHc--CCCEEEEEe
Confidence 2 22 456789999999999984 55 333 77 999886543
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=93.30 E-value=0.29 Score=43.11 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHH
Q psy9724 13 TKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELA 92 (140)
Q Consensus 13 ~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~ 92 (140)
.|=-+.-++.+.+.|++-|+- +|+....|.. . ++.+++.+.+. |- +-.-+.| .+..+.+|..
T Consensus 295 ~KI~p~~l~~W~~IL~~vP~S----~L~L~~~~~~---~-----~~~l~~~~~~~----Gv-~~~Ri~f-~~~~~~~ehl 356 (468)
T PF13844_consen 295 FKISPETLDLWARILKAVPNS----RLWLLRFPAS---G-----EARLRRRFAAH----GV-DPDRIIF-SPVAPREEHL 356 (468)
T ss_dssp GG--HHHHHHHHHHHHHSTTE----EEEEEETSTT---H-----HHHHHHHHHHT----TS--GGGEEE-EE---HHHHH
T ss_pred ccCCHHHHHHHHHHHHhCCCc----EEEEeeCCHH---H-----HHHHHHHHHHc----CC-ChhhEEE-cCCCCHHHHH
Confidence 345577889999999999986 4655555531 1 23344444432 21 1123555 5567889999
Q ss_pred HHHHHcCEEEECCCCCCCcee--eecCCceeeecC
Q psy9724 93 SFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSA 125 (140)
Q Consensus 93 aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~ 125 (140)
+.|+.+||++.|+.+.|-+.. |---|.|+|.-.
T Consensus 357 ~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~ 391 (468)
T PF13844_consen 357 RRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLP 391 (468)
T ss_dssp HHGGG-SEEE--SSS--SHHHHHHHHHT--EEB--
T ss_pred HHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEecc
Confidence 999999999999999998776 333399998654
No 108
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=87.76 E-value=2 Score=30.00 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHH
Q psy9724 17 VHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDL 56 (140)
Q Consensus 17 ~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~ 56 (140)
..|...++++++.+|+.+ +|-||..+..|.+.|.++
T Consensus 49 ~~K~~~i~~i~~~fP~~k----fiLIGDsgq~DpeiY~~i 84 (100)
T PF09949_consen 49 EHKRDNIERILRDFPERK----FILIGDSGQHDPEIYAEI 84 (100)
T ss_pred hHHHHHHHHHHHHCCCCc----EEEEeeCCCcCHHHHHHH
Confidence 599999999999999984 889999988888877554
No 109
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=87.47 E-value=7.3 Score=33.35 Aligned_cols=102 Identities=12% Similarity=0.146 Sum_probs=65.4
Q ss_pred cCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCC
Q psy9724 8 DRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCIS 87 (140)
Q Consensus 8 dRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~ 87 (140)
..-|++..-...|+++.+.+.+. . -+++=.+.|. .+++|.+++.+.+.++ ||. .-+..+++.++
T Consensus 192 NSgd~sNnHieaL~~L~~~~~~~--~---kIivPLsYg~-----~n~~Yi~~V~~~~~~l---F~~---~~~~iL~e~mp 255 (360)
T PF07429_consen 192 NSGDPSNNHIEALEALKQQFGDD--V---KIIVPLSYGA-----NNQAYIQQVIQAGKEL---FGA---ENFQILTEFMP 255 (360)
T ss_pred CCCCCCccHHHHHHHHHHhcCCC--e---EEEEECCCCC-----chHHHHHHHHHHHHHh---cCc---cceeEhhhhCC
Confidence 34566666666666666544211 1 1233334442 1346677777777765 343 23555688999
Q ss_pred HHHHHHHHHHcCEEEECCCC-CCCcee--eecCCceeeecC
Q psy9724 88 QDELASFYRDAAVALVTPLR-DEWSNS--FSRSGNFRIKSA 125 (140)
Q Consensus 88 ~~el~aly~~ADv~vvts~r-dGmnLv--A~~~G~~~v~~~ 125 (140)
.+|..++++.+|++++...| .|||-. .-+.|.||+=+.
T Consensus 256 f~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~ 296 (360)
T PF07429_consen 256 FDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR 296 (360)
T ss_pred HHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec
Confidence 99999999999999999987 477554 223388887664
No 110
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=85.56 E-value=8.8 Score=32.37 Aligned_cols=102 Identities=13% Similarity=0.177 Sum_probs=70.5
Q ss_pred cCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCC
Q psy9724 8 DRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCIS 87 (140)
Q Consensus 8 dRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~ 87 (140)
..=|++..-.+.|+++.+++..+ . -+.+-.+.|+.. + +|.++|.+.+.++ ||. .-+..+++.++
T Consensus 153 NSgd~SN~Hie~L~~l~~~~~~~--v---~ii~PlsYp~gn--~---~Yi~~V~~~~~~l---F~~---~~~~~L~e~l~ 216 (322)
T PRK02797 153 NSGDRSNRHIEALRALHQQFGDN--V---KIIVPMGYPANN--Q---AYIEEVRQAGLAL---FGA---ENFQILTEKLP 216 (322)
T ss_pred CCCCCcccHHHHHHHHHHHhCCC--e---EEEEECCcCCCC--H---HHHHHHHHHHHHh---cCc---ccEEehhhhCC
Confidence 45678888888888888876533 1 133444566433 3 5688888887764 543 34666689999
Q ss_pred HHHHHHHHHHcCEEEECCCC-CCCcee--eecCCceeeecC
Q psy9724 88 QDELASFYRDAAVALVTPLR-DEWSNS--FSRSGNFRIKSA 125 (140)
Q Consensus 88 ~~el~aly~~ADv~vvts~r-dGmnLv--A~~~G~~~v~~~ 125 (140)
.+|..++++.+|++.+.--| +|++.+ .-+-|.||+-+.
T Consensus 217 f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r 257 (322)
T PRK02797 217 FDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR 257 (322)
T ss_pred HHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec
Confidence 99999999999999998876 577654 333377776553
No 111
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=80.80 E-value=16 Score=27.21 Aligned_cols=48 Identities=15% Similarity=0.085 Sum_probs=38.5
Q ss_pred CcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeec
Q psy9724 75 NWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKS 124 (140)
Q Consensus 75 ~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~ 124 (140)
+|..+. .+..+.+|..++++.||+++-+.=..-.|++-|+.|+-+|-=
T Consensus 132 ~~~~v~--~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei 179 (206)
T PF04577_consen 132 GFEVVD--PEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEI 179 (206)
T ss_pred CeEEEe--CCCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEE
Confidence 355443 568999999999999999988887777899988888877654
No 112
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=80.08 E-value=15 Score=26.52 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHH
Q psy9724 18 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRD 97 (140)
Q Consensus 18 ~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ 97 (140)
..+.++..+.+++. +..+.+|.|-..+.. .......+.+.++++..+|+ -||+++....|-.+=...|..
T Consensus 35 ~~~~~l~~~i~~~~-----~~~iVvGlP~~~dG~-~~~~a~~v~~f~~~L~~~~~----~~v~~~DEr~TT~~A~~~l~~ 104 (130)
T TIGR00250 35 PDWSRIEELLKEWT-----PDKIVVGLPLNMDGT-EGPLTERAQKFANRLEGRFG----VPVVLWDERLSTVEAESGLFA 104 (130)
T ss_pred HHHHHHHHHHHHcC-----CCEEEEeccCCCCcC-cCHHHHHHHHHHHHHHHHhC----CCEEEEcCCcCHHHHHHHHHH
Confidence 45678888888775 457889999775433 23667788889999988874 479999888887766666655
No 113
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=76.63 E-value=1.1 Score=29.47 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=24.5
Q ss_pred EEEECCCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 100 VALVTPLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 100 v~vvts~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
|++.++..+|+|.. || |+|+|.+..++.+.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~--G~~vi~~~~~~~~~ 35 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMAC--GTPVISDDSPGLRE 35 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHC--CCeEEECChHHHHH
Confidence 46778888998885 99 99999998877654
No 114
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=75.75 E-value=49 Score=29.00 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=62.2
Q ss_pred EEEecCccccC-CHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE-E
Q psy9724 4 VLSVDRLDYTK-GLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR-Y 81 (140)
Q Consensus 4 il~VdRld~~K-Gi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~-~ 81 (140)
|+-+|..|..+ |++.-++.++.|-++- .+. + -|.|..+-..+-.++.+.-++. |..++. .
T Consensus 220 i~L~DTyd~~~sg~~~~~~~~~~l~~~~-------~~~--g--VR~DSGD~~~l~~~vr~~ld~~-------G~~~vkIi 281 (443)
T TIGR01513 220 VLLVDTYDTLRSGLPNAIAVAKELGEQG-------KVV--G--VRIDSGDLLYLSKQARKQLDAA-------GLTQVKIV 281 (443)
T ss_pred EEEEEcCCCchhhHHHHHHHHHHHhhhc-------Cce--e--EecCCCCHHHHHHHHHHHHHHc-------CCCCcEEE
Confidence 44588888777 8888888777642211 111 1 1222233334444455444443 344443 3
Q ss_pred EeCCCCHHHHHHHHHH---cCEE-----EECCC-CCCCcee----eecCCceeee
Q psy9724 82 IYGCISQDELASFYRD---AAVA-----LVTPL-RDEWSNS----FSRSGNFRIK 123 (140)
Q Consensus 82 ~~~~~~~~el~aly~~---ADv~-----vvts~-rdGmnLv----A~~~G~~~v~ 123 (140)
..+.++.+.+..|... +|++ ++|+. ++.+|.| +| +|.|+++
T Consensus 282 ~S~gLde~~i~~l~~~g~~~d~fGvGt~L~t~~~~~~l~~v~Klv~~-~G~pv~K 335 (443)
T TIGR01513 282 VSNDLDENSIAALKAEGAPIDVYGVGTSLVTASDAPALGGVYKLVAY-EGRPVMK 335 (443)
T ss_pred EeCCCCHHHHHHHHHCCCceeEEecCcceeecCCCCccceEEEEEeE-CCeeeEe
Confidence 4678999999998876 6877 66764 6778886 65 7899985
No 115
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=74.50 E-value=19 Score=28.39 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=30.1
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeecC
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSA 125 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~ 125 (140)
..+.+..+..|+.++++.||+++-+-. ..|.|- .--|+|+|+=.
T Consensus 181 ~~~~~~~~l~e~~~li~~~~l~I~~Ds-g~~HlA-~a~~~p~i~l~ 224 (279)
T cd03789 181 VNLAGKTSLRELAALLARADLVVTNDS-GPMHLA-AALGTPTVALF 224 (279)
T ss_pred ccCcCCCCHHHHHHHHHhCCEEEeeCC-HHHHHH-HHcCCCEEEEE
Confidence 344667799999999999999988753 233332 22388877643
No 116
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=74.21 E-value=20 Score=26.86 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=36.2
Q ss_pred cccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeee
Q psy9724 76 WSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIK 123 (140)
Q Consensus 76 ~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~ 123 (140)
..++.++....+.+|+..+++.+|+++-+.+.-.. .|...|+|+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH~~I--~a~~~g~P~i~ 281 (286)
T PF04230_consen 236 FFNVIIIDYSLSPDELLELISQADLVISMRLHGAI--LALSLGVPVIA 281 (286)
T ss_pred ccceeEecCCCCHHHHHHHHhcCCEEEecCCHHHH--HHHHcCCCEEE
Confidence 34566778889999999999999999998887543 34445888886
No 117
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=73.41 E-value=12 Score=30.52 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=30.9
Q ss_pred EEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeeec
Q psy9724 79 IRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIKS 124 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~~ 124 (140)
+.-+.+..+..|+.++++.||+++-+ =..+|-|- |. |+|+|+=
T Consensus 242 ~~~l~g~~sL~el~ali~~a~l~Vs~-DSGp~HlAaA~--g~p~v~L 285 (344)
T TIGR02201 242 VTSLAGKLTLPQLAALIDHARLFIGV-DSVPMHMAAAL--GTPLVAL 285 (344)
T ss_pred ccccCCCCCHHHHHHHHHhCCEEEec-CCHHHHHHHHc--CCCEEEE
Confidence 44456778999999999999988766 23344443 56 8888863
No 118
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=72.64 E-value=31 Score=25.16 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHH
Q psy9724 18 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRD 97 (140)
Q Consensus 18 ~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ 97 (140)
..+..+.++.++++ +..+.+|.|...+.. .......+.+.++++..+|+ -||.++....|-.+=...|+.
T Consensus 41 ~~~~~l~~~i~~~~-----i~~iVvGlP~~~~G~-~~~~~~~v~~f~~~L~~~~~----~~v~~~DEr~TT~~A~~~l~~ 110 (138)
T PRK00109 41 PDWDRLEKLIKEWQ-----PDGLVVGLPLNMDGT-EGPRTERARKFANRLEGRFG----LPVVLVDERLSTVEAERALAD 110 (138)
T ss_pred hHHHHHHHHHHHhC-----CCEEEEeccCCCCCC-cCHHHHHHHHHHHHHHHHhC----CCEEEEcCCcCHHHHHHHHHH
Confidence 34677788887774 568999999765432 23556777888888877773 479998888877766666654
Q ss_pred c
Q psy9724 98 A 98 (140)
Q Consensus 98 A 98 (140)
+
T Consensus 111 ~ 111 (138)
T PRK00109 111 V 111 (138)
T ss_pred c
Confidence 4
No 119
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=69.89 E-value=35 Score=31.26 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=68.4
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHH
Q psy9724 12 YTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDEL 91 (140)
Q Consensus 12 ~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el 91 (140)
+.|=.++.+.-.-+.|+.-|+- +|+..+.+. -.+....+++++++-. .+..-++| ..+.+.++-
T Consensus 439 ~~K~~pev~~~wmqIL~~vP~S----vl~L~~~~~------~~~~~~~l~~la~~~G-----v~~eRL~f-~p~~~~~~h 502 (620)
T COG3914 439 YFKITPEVFALWMQILSAVPNS----VLLLKAGGD------DAEINARLRDLAEREG-----VDSERLRF-LPPAPNEDH 502 (620)
T ss_pred cccCCHHHHHHHHHHHHhCCCc----EEEEecCCC------cHHHHHHHHHHHHHcC-----CChhheee-cCCCCCHHH
Confidence 5677788888999999999986 577766651 1256777888888742 22333444 667788899
Q ss_pred HHHHHHcCEEEECCCCCCCcee--eecCCceee
Q psy9724 92 ASFYRDAAVALVTPLRDEWSNS--FSRSGNFRI 122 (140)
Q Consensus 92 ~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v 122 (140)
.|-|..||+++.|--+-|=-.. |-+-|.||+
T Consensus 503 ~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVl 535 (620)
T COG3914 503 RARYGIADLVLDTYPYGGHTTASDALWMGVPVL 535 (620)
T ss_pred HHhhchhheeeecccCCCccchHHHHHhcCcee
Confidence 9999999999999888775443 444456665
No 120
>KOG3742|consensus
Probab=68.56 E-value=2.9 Score=37.33 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=31.7
Q ss_pred HHHHHcCEEEECCCCCCCcee---eecCCceeeecCCCCc
Q psy9724 93 SFYRDAAVALVTPLRDEWSNS---FSRSGNFRIKSAPSGN 129 (140)
Q Consensus 93 aly~~ADv~vvts~rdGmnLv---A~~~G~~~v~~~~gg~ 129 (140)
.+-|-+...|+||.+|+++.+ +-.=|.|.|.|+++|-
T Consensus 496 eFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGF 535 (692)
T KOG3742|consen 496 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGF 535 (692)
T ss_pred HHhccccccccccccCCCCCCchheEEeccccccccccch
Confidence 467899999999999999997 3334999999999984
No 121
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=68.23 E-value=14 Score=26.46 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCCCCeEEEE-------EecCCCCChhHHHHHHHHHHHHHHHH
Q psy9724 22 AFETLLEKHPEHLEKVTLLQ-------IAVPSRTDVKEYQDLKEEMDQLVGRI 67 (140)
Q Consensus 22 A~~~~L~~~P~~~~kv~Lvq-------i~~psr~~~~~y~~~~~~l~~lv~~I 67 (140)
+.+.+.+.+|....++...- |..|.+....+|++..+++.+.+.++
T Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~~~~~~i~DP~~~~~~~f~~~~~~I~~~v~~l 139 (141)
T cd00115 87 NLAELLEPPPGGRAKVELLGEYAGDREVPDPYYGSLEAFEEVYDLIEEAIKAL 139 (141)
T ss_pred HHHHHHhcCCCCcceEEeHhhhCcCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 44555567777778888887 88898888888999999999988765
No 122
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=67.54 E-value=3.4 Score=25.37 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCCCC
Q psy9724 58 EEMDQLVGRINGRFTTP 74 (140)
Q Consensus 58 ~~l~~lv~~IN~~~g~~ 74 (140)
++|.+.+++||.+||..
T Consensus 2 ~~LM~~iD~iN~r~G~~ 18 (52)
T PF13438_consen 2 QRLMQAIDAINRRFGRG 18 (52)
T ss_pred hHHHHHHHHHHHhcCCC
Confidence 56788999999999973
No 123
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=66.49 E-value=44 Score=28.04 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhC-CCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCC----------------------
Q psy9724 17 VHRLKAFETLLEKH-PEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT---------------------- 73 (140)
Q Consensus 17 ~~kl~A~~~~L~~~-P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~---------------------- 73 (140)
...+.|..+.++++ |..+.. +-|.||+++..-. | -.++..+++.-+|..+..
T Consensus 143 ~~~lAa~~e~~~~~~p~~rq~-vAVlVGg~nk~f~--~--~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~ 217 (329)
T COG3660 143 SQRLAALREAFKHLLPLPRQR-VAVLVGGNNKAFV--F--QEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILK 217 (329)
T ss_pred HHHhhhhHHHHHhhCCCCCce-EEEEecCCCCCCc--c--CHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHH
Confidence 34556666666666 777644 4455666654321 1 012223333444433332
Q ss_pred --CCcccEEEEeC-CCCHHHHHHHHHHcCEEEECCCCCCCcee--eecCCceeeecCC
Q psy9724 74 --PNWSPIRYIYG-CISQDELASFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSAP 126 (140)
Q Consensus 74 --~~~~pv~~~~~-~~~~~el~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~~ 126 (140)
..-.|..|..+ +....=..+++.+||-.++|. |..|+. ||-.|.||-.-..
T Consensus 218 ~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~Ta--DSinM~sEAasTgkPv~~~~~ 273 (329)
T COG3660 218 NNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTA--DSINMCSEAASTGKPVFILEP 273 (329)
T ss_pred hccccCceeEeCCCCCCCCchHHHHhhcceEEEec--chhhhhHHHhccCCCeEEEec
Confidence 12335555443 345556788999999999875 666665 7777999866443
No 124
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=64.92 E-value=36 Score=28.79 Aligned_cols=69 Identities=23% Similarity=0.279 Sum_probs=45.6
Q ss_pred HHHHHHhCCCCCC--CeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHH
Q psy9724 23 FETLLEKHPEHLE--KVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 96 (140)
Q Consensus 23 ~~~~L~~~P~~~~--kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~ 96 (140)
.+++|+.-|++.+ ++...|+..-...+.. .+...+++++|+..+.+.++.-++..++.-+.+|...++.
T Consensus 56 ~~~ll~~vp~l~~~~~i~~~~~~~idS~~mt-----~~dw~~la~~I~~~~~~~~~~GiVVtHGTDTme~tA~~Ls 126 (349)
T TIGR00520 56 IEDLIEAVPSLKDIANIKGEQIVNVGSQDMN-----EEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLD 126 (349)
T ss_pred HHHHHHhCccccccceEEEEEccCCCcccCC-----HHHHHHHHHHHHHHhccCCCCEEEEeCCcccHHHHHHHHH
Confidence 3788888888865 5666666542222221 2334667777777776556677888899999999877653
No 125
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=64.63 E-value=7.2 Score=24.78 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCCC
Q psy9724 18 HRLKAFETLLEKHPEH 33 (140)
Q Consensus 18 ~kl~A~~~~L~~~P~~ 33 (140)
...+|+..|++.||+|
T Consensus 9 ~L~~~m~~fie~hP~W 24 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNW 24 (57)
T ss_pred HHHHHHHHHHHcCCCc
Confidence 4568999999999999
No 126
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.42 E-value=79 Score=25.59 Aligned_cols=98 Identities=15% Similarity=0.051 Sum_probs=64.4
Q ss_pred CccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecC---CCCC---hhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE
Q psy9724 9 RLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVP---SRTD---VKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82 (140)
Q Consensus 9 Rld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~p---sr~~---~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~ 82 (140)
-+.....-+.+...|-+||+.++. +...|..+|.- ...+ .+-.++....+.+++.+ -.+|.|+
T Consensus 5 DlHL~~~~p~~t~~fl~Fl~~~a~--~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~---------G~~v~~i 73 (237)
T COG2908 5 DLHLGPKRPALTAFFLDFLREEAA--QADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARK---------GTRVYYI 73 (237)
T ss_pred ccccCCCCcHHHHHHHHHHHhccc--cCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhc---------CCeEEEe
Confidence 344444456778899999999987 34567777742 1111 13334555555555554 3578888
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCcee
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFR 121 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~ 121 (140)
.|.- +++..-.-.+.+..++=+.|+.++.+. |.+.
T Consensus 74 ~GN~--Dfll~~~f~~~~g~~~l~~~~~~~~l~--g~~~ 108 (237)
T COG2908 74 HGNH--DFLLGKRFAQEAGGMTLLPDPIVLDLY--GKRI 108 (237)
T ss_pred cCch--HHHHHHHHHhhcCceEEcCcceeeeec--CcEE
Confidence 8764 477888888888888888888888776 6543
No 127
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=61.70 E-value=54 Score=24.99 Aligned_cols=95 Identities=9% Similarity=0.095 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEe-CCCCHHHHHHHHHHcC
Q psy9724 21 KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIY-GCISQDELASFYRDAA 99 (140)
Q Consensus 21 ~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~-~~~~~~el~aly~~AD 99 (140)
.++++|++.-..-..+++++ .+.+..+ +.+.++..+.-.++ +...+.+.. ...+.++.....+.||
T Consensus 16 ~~~~~~~~~~~~~~~~i~~i--ptA~~~~----~~~~~~~~~~~~~l-------G~~~~~~~~~~~~~~~~~~~~l~~ad 82 (210)
T cd03129 16 PILQDFLARAGGAGARVLFI--PTASGDR----DEYGEEYRAAFERL-------GVEVVHLLLIDTANDPDVVARLLEAD 82 (210)
T ss_pred HHHHHHHHHcCCCCCeEEEE--eCCCCCh----HHHHHHHHHHHHHc-------CCceEEEeccCCCCCHHHHHHHhhCC
Confidence 46677776553223344444 3433221 12223333333333 234443332 1246678889999999
Q ss_pred EEEECCCCCCCcee--------------eecCCceeeecCCCCc
Q psy9724 100 VALVTPLRDEWSNS--------------FSRSGNFRIKSAPSGN 129 (140)
Q Consensus 100 v~vvts~rdGmnLv--------------A~~~G~~~v~~~~gg~ 129 (140)
+.+++- -+.+++. ..++|.+.+.+-.|.+
T Consensus 83 ~I~~~G-G~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 83 GIFVGG-GNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAA 125 (210)
T ss_pred EEEEcC-CcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHH
Confidence 999987 5555443 3336888888777654
No 128
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=59.64 E-value=1e+02 Score=25.70 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=32.1
Q ss_pred EEEeCCCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeee
Q psy9724 80 RYIYGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIK 123 (140)
Q Consensus 80 ~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~ 123 (140)
..+.++++..++.+|++.||+++-.|- .|+ .-|+--|+|+|.
T Consensus 264 v~l~~~l~~~~~l~Ll~~a~~vitdSS-ggi-~EA~~lg~Pvv~ 305 (365)
T TIGR03568 264 FRLFKSLGQERYLSLLKNADAVIGNSS-SGI-IEAPSFGVPTIN 305 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEEcCh-hHH-HhhhhcCCCEEe
Confidence 355889999999999999999886552 244 555555999993
No 129
>PRK09458 pspB phage shock protein B; Provisional
Probab=58.99 E-value=11 Score=25.27 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHH-hCCCCCCC
Q psy9724 14 KGLVHRLKAFETLLE-KHPEHLEK 36 (140)
Q Consensus 14 KGi~~kl~A~~~~L~-~~P~~~~k 36 (140)
+-+..+++++|+.|. +||+||.+
T Consensus 52 ~rm~~RI~tLE~ILDae~P~WR~~ 75 (75)
T PRK09458 52 ERMRERIQALEAILDAEHPNWRNR 75 (75)
T ss_pred HHHHHHHHHHHHHHcccCCCcCCC
Confidence 346789999999886 79999864
No 130
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=58.76 E-value=9.7 Score=28.91 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=35.3
Q ss_pred HHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCC-CCCcccEEEEeCCCCHHHHHHHH
Q psy9724 24 ETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFT-TPNWSPIRYIYGCISQDELASFY 95 (140)
Q Consensus 24 ~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g-~~~~~pv~~~~~~~~~~el~aly 95 (140)
..+|+-||++-++..... |......-..+.++..+...+.|.+|- ..|+.=|++..+. +.+++.+-+
T Consensus 65 ~~~l~~HP~lg~~~~~~~----S~~EQ~gl~~l~~~~~~~l~~lN~~Y~~kFGfpFii~v~g~-s~~~IL~~l 132 (166)
T PRK13798 65 DEALAGHPRIGERPASKA----SAREQAGVADADEAVMAALAAGNRAYEEKFGFVFLICATGR-SADEMLAAL 132 (166)
T ss_pred HHHHHhCCcccCcccccc----CHHHhcccccCCHHHHHHHHHHHHHHHHhCCCeEEEeeCCC-CHHHHHHHH
Confidence 346889999987654322 222211111222233344445555552 2345567776666 777776654
No 131
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=57.93 E-value=1e+02 Score=25.31 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=30.6
Q ss_pred EEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeeecC
Q psy9724 79 IRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIKSA 125 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~~~ 125 (140)
+.-+.+..+..|+.++++.||+++-+-. -.|-+- |. |+|+|+=.
T Consensus 244 ~~~l~g~~sL~el~ali~~a~l~v~nDS-Gp~HlAaA~--g~P~v~lf 288 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQLFIGVDS-APAHIAAAV--NTPLICLF 288 (352)
T ss_pred cccccCCCCHHHHHHHHHhCCEEEecCC-HHHHHHHHc--CCCEEEEE
Confidence 3334677899999999999998876532 233333 66 88888643
No 132
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=57.72 E-value=70 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=34.4
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCC-CC--CeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhc
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEH-LE--KVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRING 69 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~-~~--kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~ 69 (140)
.|-++=||... +++|+.||++++.- ++ +-..||+....+. .+ -..-.+.+++++++-|.
T Consensus 135 eI~IYeDR~~h-------vk~Fr~Ff~~~~~~~r~~i~~~VI~V~~~~~~-L~-p~~E~~~V~~mi~~hN~ 196 (197)
T PF10307_consen 135 EIRIYEDRPKH-------VKGFRDFFEELNRNTRKPIQWEVIHVPPLSTY-LD-PVVEVALVQRMINEHNR 196 (197)
T ss_pred EEEEEcCCHHH-------HHHHHHHHHHhhhcccCCCceEEEEeCCCCCc-CC-hHHHHHHHHHHHHHhcc
Confidence 46667777444 45677777776664 33 3345555544332 11 12345778888888775
No 133
>KOG2941|consensus
Probab=57.29 E-value=1.2e+02 Score=26.44 Aligned_cols=48 Identities=10% Similarity=0.025 Sum_probs=36.8
Q ss_pred CcccEEEEeCCCCHHHHHHHHHHcCEE--EECCCCCCCce----e---eecCCceeeecC
Q psy9724 75 NWSPIRYIYGCISQDELASFYRDAAVA--LVTPLRDEWSN----S---FSRSGNFRIKSA 125 (140)
Q Consensus 75 ~~~pv~~~~~~~~~~el~aly~~ADv~--vvts~rdGmnL----v---A~~~G~~~v~~~ 125 (140)
.|+-|.+.+-=+.-|+.+.++..||.. +-||. .|+.| | .| |-||+|=+
T Consensus 316 ~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSS-SGLDLPMKVVDMFGc--glPvcA~~ 372 (444)
T KOG2941|consen 316 NLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSS-SGLDLPMKVVDMFGC--GLPVCAVN 372 (444)
T ss_pred cccceeeeecccccccchhHhhccccceEeeecC-cccCcchhHHHhhcC--CCceeeec
Confidence 477888888889999999999999965 45554 46655 2 88 99998743
No 134
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=56.85 E-value=62 Score=26.77 Aligned_cols=68 Identities=28% Similarity=0.378 Sum_probs=45.8
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHhcCCCCC---CcccEEEEeCCCCHHHHHHHHHHcC------E----EEECCCCCCC
Q psy9724 44 VPSRTDVKEYQDLKEEMDQLVGRINGRFTTP---NWSPIRYIYGCISQDELASFYRDAA------V----ALVTPLRDEW 110 (140)
Q Consensus 44 ~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~---~~~pv~~~~~~~~~~el~aly~~AD------v----~vvts~rdGm 110 (140)
.|.-+..+||+.+-+.+.+.-.| |.+- -|.|| .++++...+++... + +-|-|..|++
T Consensus 163 DPPfE~~~eY~rvv~~l~~~~kR----f~~g~yaiWYPi------k~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d~~ 232 (279)
T COG2961 163 DPPFELKDEYQRVVEALAEAYKR----FATGTYAIWYPI------KDRRQIRRFLRALEALGIRKILQIELAVRPDSDPR 232 (279)
T ss_pred CCCcccccHHHHHHHHHHHHHHh----hcCceEEEEEee------cchHHHHHHHHHHhhcCccceeeeEEEecCCCCCC
Confidence 56566667887776666666655 3332 25555 36777777777643 2 2345889999
Q ss_pred ceeeecCCceeee
Q psy9724 111 SNSFSRSGNFRIK 123 (140)
Q Consensus 111 nLvA~~~G~~~v~ 123 (140)
++.+| |..||-
T Consensus 233 gm~gS--GMivIN 243 (279)
T COG2961 233 GMNGS--GMIVIN 243 (279)
T ss_pred Cccce--eEEEEC
Confidence 99999 999985
No 135
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=56.48 E-value=27 Score=26.59 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccEE-E-EeCCCC-HHHHHHHHHH---cCEEEECCCCCCCc
Q psy9724 54 QDLKEEMDQLVGRINGRFTTPNWSPIR-Y-IYGCIS-QDELASFYRD---AAVALVTPLRDEWS 111 (140)
Q Consensus 54 ~~~~~~l~~lv~~IN~~~g~~~~~pv~-~-~~~~~~-~~el~aly~~---ADv~vvts~rdGmn 111 (140)
+++++.+.+++.+||..|...++.|+. . ..+.+. .+++...+.. -|.+-++|.++|.+
T Consensus 12 ~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~ 75 (178)
T PRK15423 12 AEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMS 75 (178)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCc
Confidence 578999999999999999865556543 2 245544 4444445543 34667788887765
No 136
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=56.27 E-value=1.2e+02 Score=25.33 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=39.4
Q ss_pred EEEecCcccc-CCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEE-E
Q psy9724 4 VLSVDRLDYT-KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR-Y 81 (140)
Q Consensus 4 il~VdRld~~-KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~-~ 81 (140)
|+=+|..|.. +|++.-++.++.+.+... +..=|.+ |..+-..+-+++.+.-++ .|+.|+. +
T Consensus 220 i~L~Dtyd~~~~~~~~~l~~~~~l~~~~~----~~~gvR~------DSGd~~~~~~~~r~~l~~-------~G~~~~~Iv 282 (327)
T cd01570 220 TLLVDTYDTLRSGLPNAIAVAKELGALGY----RLVGVRI------DSGDLAYLSKEARKMLDE-------AGLTKVKIV 282 (327)
T ss_pred EEEEEcccchhhhHHHHHHHHHHHHhhCC----CceEEEe------CCCCHHHHHHHHHHHHHH-------CCCCCcEEE
Confidence 4445777766 377777777766543211 1112221 112212233333333333 3455543 3
Q ss_pred EeCCCCHHHHHHHHHH
Q psy9724 82 IYGCISQDELASFYRD 97 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ 97 (140)
+.+.++.+.+..++..
T Consensus 283 ~Sdgld~~~i~~l~~~ 298 (327)
T cd01570 283 ASNDLDEYTIAALNAQ 298 (327)
T ss_pred EeCCCCHHHHHHHHHC
Confidence 4578999999998864
No 137
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=56.20 E-value=1.1e+02 Score=25.08 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=30.1
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeeecC
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIKSA 125 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~~~ 125 (140)
+.+..+..|+.++...||.++ +.=.-.|.|- |. |+|+|+--
T Consensus 236 l~~k~sL~e~~~li~~a~l~I-~~DSg~~HlAaA~--~~P~I~iy 277 (334)
T COG0859 236 LAGKTSLEELAALIAGADLVI-GNDSGPMHLAAAL--GTPTIALY 277 (334)
T ss_pred cCCCCCHHHHHHHHhcCCEEE-ccCChHHHHHHHc--CCCEEEEE
Confidence 577889999999999999844 4334455554 55 88888754
No 138
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=55.16 E-value=36 Score=29.10 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHH
Q psy9724 16 LVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFY 95 (140)
Q Consensus 16 i~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly 95 (140)
++.-++|.+++.+++|+++ ++.-..+. ...+.+.+.....+. . .++... ..+....+
T Consensus 202 lP~~l~aa~~l~~~~p~l~----fvvp~a~~--------~~~~~i~~~~~~~~~----~--~~~~~~-----~~~~~~~m 258 (373)
T PF02684_consen 202 LPIFLEAAKLLKKQRPDLQ----FVVPVAPE--------VHEELIEEILAEYPP----D--VSIVII-----EGESYDAM 258 (373)
T ss_pred HHHHHHHHHHHHHhCCCeE----EEEecCCH--------HHHHHHHHHHHhhCC----C--CeEEEc-----CCchHHHH
Confidence 4666899999999999863 44333331 112223333333211 0 122221 23456779
Q ss_pred HHcCEEEECC
Q psy9724 96 RDAAVALVTP 105 (140)
Q Consensus 96 ~~ADv~vvts 105 (140)
+.||+++++|
T Consensus 259 ~~ad~al~~S 268 (373)
T PF02684_consen 259 AAADAALAAS 268 (373)
T ss_pred HhCcchhhcC
Confidence 9999999887
No 139
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=55.05 E-value=51 Score=28.56 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEecCCCC--ChhHHHHHHHHHHHHHHHHhcCC-CCCCcccEEEEe-CCCCHHHHHHHH
Q psy9724 20 LKAFETLLEKHPEHLEKVTLLQIAVPSRT--DVKEYQDLKEEMDQLVGRINGRF-TTPNWSPIRYIY-GCISQDELASFY 95 (140)
Q Consensus 20 l~A~~~~L~~~P~~~~kv~Lvqi~~psr~--~~~~y~~~~~~l~~lv~~IN~~~-g~~~~~pv~~~~-~~~~~~el~aly 95 (140)
+.++|+.+.+ +++.++.+|.|... ++..-.+ ...+.+++.+.|-.- ++.=|.|+++.. .+++...+..-+
T Consensus 147 ~~~LE~~~~~-----~~vkl~iLCnPHNP~Grvwt~ee-L~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~ 220 (388)
T COG1168 147 FDALEKAFVD-----ERVKLFILCNPHNPTGRVWTKEE-LRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERF 220 (388)
T ss_pred HHHHHHHHhc-----CCccEEEEeCCCCCCCccccHHH-HHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhh
Confidence 5678877753 35789999998663 4444323 356677777665543 334577887755 456666555544
Q ss_pred HHcCEEEECCCCCCCceee
Q psy9724 96 RDAAVALVTPLRDEWSNSF 114 (140)
Q Consensus 96 ~~ADv~vvts~rdGmnLvA 114 (140)
+-..+.++|-.-+|||-+
T Consensus 221 -a~~~it~~saSKtFNlaG 238 (388)
T COG1168 221 -ADNSITLTSASKTFNLAG 238 (388)
T ss_pred -hcceEEEeeccccccchh
Confidence 456677788899999963
No 140
>PRK14986 glycogen phosphorylase; Provisional
Probab=54.89 E-value=1.5e+02 Score=28.25 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=71.5
Q ss_pred EEEecCccccCCHHH-HHHHHHHH--HHhCCCCC-CCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE
Q psy9724 4 VLSVDRLDYTKGLVH-RLKAFETL--LEKHPEHL-EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79 (140)
Q Consensus 4 il~VdRld~~KGi~~-kl~A~~~~--L~~~P~~~-~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv 79 (140)
++.+=|+..=|=-.+ .|..++++ +.++|+.. ..+++|--|-+.-.+ ..-+.+.+.|..++.-||+.=.-.+.--|
T Consensus 546 d~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y-~~aK~iIk~I~~va~~in~Dp~v~~~lkV 624 (815)
T PRK14986 546 DVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAY-YMAKHIIHLINDVAKVINNDPQIGDKLKV 624 (815)
T ss_pred eeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCc-HHHHHHHHHHHHHHHHhccChhhcCceeE
Confidence 455667776665555 66665555 45567532 245665555444333 33357888888899988873111222347
Q ss_pred EEEeC-CCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeecCCCC
Q psy9724 80 RYIYG-CISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSAPSG 128 (140)
Q Consensus 80 ~~~~~-~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~~gg 128 (140)
+|+++ .++.+| -++.+|||-.-+|.+ ++=|| ||-=|+.+.-|
T Consensus 625 VFlenY~vslAe--~lipg~Dv~eqis~a---g~EAS--GTsnMK~alNG 667 (815)
T PRK14986 625 VFIPNYSVSLAQ--LIIPAADLSEQISLA---GTEAS--GTSNMKFALNG 667 (815)
T ss_pred EEeCCCCHHHHH--HhhhhhhhhhhCCCC---Ccccc--CcchhhHHhcC
Confidence 77764 466665 589999999999985 34455 55555544433
No 141
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=54.51 E-value=18 Score=18.47 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q psy9724 14 KGLVHRLKAFETLLEKHPE 32 (140)
Q Consensus 14 KGi~~kl~A~~~~L~~~P~ 32 (140)
+-....+..|++++++||+
T Consensus 14 g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 14 GDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHCcC
Confidence 3456778899999999996
No 142
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=53.78 E-value=35 Score=24.15 Aligned_cols=46 Identities=13% Similarity=0.321 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCC-CCCeEEEE---------EecCCCCChhHHHHHHHHHHHHHHHH
Q psy9724 22 AFETLLEKHPEH-LEKVTLLQ---------IAVPSRTDVKEYQDLKEEMDQLVGRI 67 (140)
Q Consensus 22 A~~~~L~~~P~~-~~kv~Lvq---------i~~psr~~~~~y~~~~~~l~~lv~~I 67 (140)
+.+.+...+|.. ..++.++- |-.|...+.+.|++..+++.+.+..+
T Consensus 82 ~~~~~~~~~p~~~~~kv~~~~~~~~~~~~dI~DP~~~~~~~f~~~~~~I~~~i~~l 137 (140)
T smart00226 82 HLRNICRLKPRVSRAKVELFGEYVTGSHGDVDDPYYGGIDGFEQVYDELENALQEF 137 (140)
T ss_pred HHHHHHHHccccccceeEeHhhhCcCCCCcCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 345566667775 56777775 66787777788999988888888765
No 143
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=53.00 E-value=1.4e+02 Score=25.25 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeecCC
Q psy9724 88 QDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSAP 126 (140)
Q Consensus 88 ~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~~ 126 (140)
..++..+|++||+++..|=-=-.=+.++ |+|+|--..
T Consensus 287 ~~~~~~~l~~ADlvI~rSGt~T~E~a~l--g~P~Ilip~ 323 (396)
T TIGR03492 287 RGAFAEILHWADLGIAMAGTATEQAVGL--GKPVIQLPG 323 (396)
T ss_pred hHhHHHHHHhCCEEEECcCHHHHHHHHh--CCCEEEEeC
Confidence 4567899999999999864111112256 999998763
No 144
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=52.08 E-value=1.3e+02 Score=28.38 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=68.7
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHHhCC-CCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHP-EHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~~~P-~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
+++.+=|+..=|=-.+-+.=.+++.+.-- ++..+++++--|-+.-.+. .-+.+...+...++.||.+ .-|+|
T Consensus 489 fd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~-~aK~iIk~I~~~a~~in~~------lkVvF 561 (750)
T COG0058 489 FDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADY-AAKEIIKLINDVADVINNK------LKVVF 561 (750)
T ss_pred eeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcch-HHHHHHHHHHHHHHhhccc------ceEEE
Confidence 35556666666654444433333322222 5555666555554433332 2247788888999998871 23667
Q ss_pred EeC-CCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeecCCCCcc
Q psy9724 82 IYG-CISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 82 ~~~-~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~~gg~~ 130 (140)
+.+ +++.++ .++.+|||-..+|.+ ++=|| ||.=|+.+--|..
T Consensus 562 l~nYdvslA~--~iipa~Dvweqis~a---~~EAS--GTsnMK~alNGal 604 (750)
T COG0058 562 LPNYDVSLAE--LLIPAADVWEQIPTA---GKEAS--GTSNMKAALNGAL 604 (750)
T ss_pred eCCCChhHHH--hhcccccccccCCCC---Ccccc--CcCcchHHhcCCc
Confidence 654 577775 579999999999987 45566 6666655554443
No 145
>KOG4626|consensus
Probab=51.99 E-value=87 Score=29.50 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc--EEEEeCCCCHHHHHHH
Q psy9724 17 VHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP--IRYIYGCISQDELASF 94 (140)
Q Consensus 17 ~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p--v~~~~~~~~~~el~al 94 (140)
+.-++-+.+.|++-|+- +|....-|.-++ .++.+-+++. |.+| |.| ..-...+|=..-
T Consensus 773 P~~l~~W~~ILk~VPnS----~LwllrfPa~ge--------~rf~ty~~~~-------Gl~p~riif-s~va~k~eHvrr 832 (966)
T KOG4626|consen 773 PSTLQMWANILKRVPNS----VLWLLRFPAVGE--------QRFRTYAEQL-------GLEPDRIIF-SPVAAKEEHVRR 832 (966)
T ss_pred HHHHHHHHHHHHhCCcc----eeEEEeccccch--------HHHHHHHHHh-------CCCccceee-ccccchHHHHHh
Confidence 56788999999999986 577778886543 3334445442 3333 333 333455666777
Q ss_pred HHHcCEEEECCCCCCCc----eeeecCCceeee
Q psy9724 95 YRDAAVALVTPLRDEWS----NSFSRSGNFRIK 123 (140)
Q Consensus 95 y~~ADv~vvts~rdGmn----LvA~~~G~~~v~ 123 (140)
+..||||+.||++.|-- ..=- |+|.|.
T Consensus 833 ~~LaDv~LDTplcnGhTTg~dvLw~--GvPmVT 863 (966)
T KOG4626|consen 833 GQLADVCLDTPLCNGHTTGMDVLWA--GVPMVT 863 (966)
T ss_pred hhhhhhcccCcCcCCcccchhhhcc--CCceee
Confidence 99999999999998753 2333 778763
No 146
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=51.52 E-value=17 Score=24.29 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHH-hCCCCCCC
Q psy9724 15 GLVHRLKAFETLLE-KHPEHLEK 36 (140)
Q Consensus 15 Gi~~kl~A~~~~L~-~~P~~~~k 36 (140)
.+..+++++|+.|. ++|+||.|
T Consensus 53 rm~eRI~tLE~ILdae~P~wR~~ 75 (75)
T PF06667_consen 53 RMEERIETLERILDAEHPNWRQK 75 (75)
T ss_pred HHHHHHHHHHHHHcCCCCCcccC
Confidence 35788999999875 68999865
No 147
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=51.31 E-value=91 Score=26.84 Aligned_cols=44 Identities=9% Similarity=0.020 Sum_probs=31.0
Q ss_pred EEEEeCCCCHHHHHHHHHHcC-----E-----EEECCC-----CCCCcee----eecCCceeee
Q psy9724 79 IRYIYGCISQDELASFYRDAA-----V-----ALVTPL-----RDEWSNS----FSRSGNFRIK 123 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~AD-----v-----~vvts~-----rdGmnLv----A~~~G~~~v~ 123 (140)
+..+.+.++.+....|++.++ . -++|+. ..++|+| +| +|.|+++
T Consensus 306 ~iv~Sd~Lde~~i~~L~~~~~g~~~~~FGIGT~L~~d~~~~~~~~pl~~V~KLv~~-~g~P~~K 368 (377)
T cd01401 306 TLVFSDGLDVEKALELYEYFKGRIKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVEC-NGRPVAK 368 (377)
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCcceeEecCcceecCCCcccCCCCcceEEEEEEE-CCcceeE
Confidence 345688999999999998766 1 244544 3667776 55 6788875
No 148
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=50.56 E-value=17 Score=26.52 Aligned_cols=70 Identities=14% Similarity=0.306 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCC-CCCCcccEEEEeCCCCHHHHHHHH
Q psy9724 17 VHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRF-TTPNWSPIRYIYGCISQDELASFY 95 (140)
Q Consensus 17 ~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~-g~~~~~pv~~~~~~~~~~el~aly 95 (140)
...+..+.++.+++ ++..+.+|.|...+..+ .+....+.+.++++..+| + -||+++....|-.+-..++
T Consensus 37 ~~~~~~l~~li~~~-----~i~~iVvGlP~~~~G~~-~~~~~~v~~f~~~L~~~~~~----ipV~~~DEr~TT~~A~~~l 106 (135)
T PF03652_consen 37 EKDIEELKKLIEEY-----QIDGIVVGLPLNMDGSE-SEQARRVRKFAEELKKRFPG----IPVILVDERLTTKEAERRL 106 (135)
T ss_dssp CCCHHHHHHHHHHC-----CECEEEEEEEBBCTSSC--CCHHHHHHHHHHHHHHH-T----SEEEEEECSCSHHCCHCCH
T ss_pred chHHHHHHHHHHHh-----CCCEEEEeCCcccCCCc-cHHHHHHHHHHHHHHHhcCC----CcEEEECCChhHHHHHHHH
Confidence 45567788888877 46789999986653222 234556666777776666 3 4899988888776654444
Q ss_pred H
Q psy9724 96 R 96 (140)
Q Consensus 96 ~ 96 (140)
+
T Consensus 107 ~ 107 (135)
T PF03652_consen 107 R 107 (135)
T ss_dssp H
T ss_pred H
Confidence 4
No 149
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=48.50 E-value=1.8e+02 Score=27.60 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=63.0
Q ss_pred EEEEecCccccCCHHH-HHHHHHHH--HHhCCCCC-CCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy9724 3 LVLSVDRLDYTKGLVH-RLKAFETL--LEKHPEHL-EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP 78 (140)
Q Consensus 3 iil~VdRld~~KGi~~-kl~A~~~~--L~~~P~~~-~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p 78 (140)
+++.+=|+..=|=-.+ .|.-++++ +.++|+.. ..+++|--|-+.-.+ ..-+++.+.+..++..||+.=.-.++--
T Consensus 532 fdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y-~~aK~iIklI~~va~~in~Dp~v~~~lk 610 (797)
T cd04300 532 FDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGY-YMAKLIIKLINAVADVVNNDPDVGDKLK 610 (797)
T ss_pred EEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCc-HHHHHHHHHHHHHHHHhccChhcCCceE
Confidence 3456677777775555 55554444 34466532 245555555444333 3335788889999999997422122223
Q ss_pred EEEEeC-CCCHHHHHHHHHHcCEEEECCCC
Q psy9724 79 IRYIYG-CISQDELASFYRDAAVALVTPLR 107 (140)
Q Consensus 79 v~~~~~-~~~~~el~aly~~ADv~vvts~r 107 (140)
|+|+++ .++.+| -++.+|||-.-+|.+
T Consensus 611 VVFlenY~VslAe--~iipaaDvseqis~a 638 (797)
T cd04300 611 VVFLPNYNVSLAE--KIIPAADLSEQISTA 638 (797)
T ss_pred EEEeCCCChHHHH--HhhhhhhhhhhCCCC
Confidence 777765 466665 589999999999985
No 150
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=48.38 E-value=1.9e+02 Score=25.37 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=57.3
Q ss_pred EEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE-E
Q psy9724 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY-I 82 (140)
Q Consensus 4 il~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~-~ 82 (140)
|+=+|..|..+|++..++..+.|-+ ..+..-| |.|..+-..+-.++.+..++ .|..++.. .
T Consensus 223 i~LvDTyd~~~~i~~ai~v~~~l~~-----~~~~~gV------RlDSGDl~~l~~~~r~~ld~-------~G~~~~kIi~ 284 (443)
T PRK12484 223 TLLVDTYDTLRGVRNAIEVAKELGN-----RFDPRGV------RLDSGDLAELSKATRAILDA-------AGLEQVKIVA 284 (443)
T ss_pred EEEEEcCCcHHHHHHHHHHHHHhhc-----ccCccee------eCCCCCHHHHHHHHHHHHHH-------CCCCCcEEEE
Confidence 5567777777777777766666532 1111111 12223222344444443332 34455443 3
Q ss_pred eCCCCHHHHHHHHHH---cCEE-----EECCC-CCCCcee----eecCCceeee
Q psy9724 83 YGCISQDELASFYRD---AAVA-----LVTPL-RDEWSNS----FSRSGNFRIK 123 (140)
Q Consensus 83 ~~~~~~~el~aly~~---ADv~-----vvts~-rdGmnLv----A~~~G~~~v~ 123 (140)
.+.++.+.+..|... +|.+ ++|+. ++.+|.| ++ +|.|+++
T Consensus 285 S~gLde~~i~~l~~~g~~id~fGvGt~L~~~~~~p~l~~v~Klv~~-~g~pv~K 337 (443)
T PRK12484 285 SGGLDEYRIAALLAAGAPIDGFGVGTRLGVAADAPVLDSAYKLVAY-EGRGVTK 337 (443)
T ss_pred eCCCCHHHHHHHHHCCCcCeEEeeCcccccCCCCCccceEEEEEEe-cCCCeEE
Confidence 678999999998876 5665 55544 4557776 55 6889886
No 151
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=47.44 E-value=93 Score=26.32 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=16.5
Q ss_pred HHHHHHHcCEEEECCCCCCCcee----eecCCceee
Q psy9724 91 LASFYRDAAVALVTPLRDEWSNS----FSRSGNFRI 122 (140)
Q Consensus 91 l~aly~~ADv~vvts~rdGmnLv----A~~~G~~~v 122 (140)
+.++|++||.++. |-|=+.+ |+ |.|.|
T Consensus 246 m~~~~~~ADLvIs---RaGa~Ti~E~~a~--g~P~I 276 (357)
T COG0707 246 MAALLAAADLVIS---RAGALTIAELLAL--GVPAI 276 (357)
T ss_pred HHHHHHhccEEEe---CCcccHHHHHHHh--CCCEE
Confidence 6777788887765 3343333 66 66655
No 152
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=46.15 E-value=54 Score=26.17 Aligned_cols=40 Identities=28% Similarity=0.451 Sum_probs=28.6
Q ss_pred CEEEEEecCccccCC--HHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Q psy9724 1 MSLVLSVDRLDYTKG--LVHRLKAFETLLEKHPEHLEKVTLLQIAVP 45 (140)
Q Consensus 1 k~iil~VdRld~~KG--i~~kl~A~~~~L~~~P~~~~kv~Lvqi~~p 45 (140)
++||+.+|-||+... +...++++..|+.. | ++++|....+
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~-~----~i~~Il~~D~ 213 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDF-P----NIIFILAFDP 213 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCC-C----CeEEEEEecH
Confidence 589999999998543 67778888888864 3 4566665533
No 153
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.95 E-value=1.2e+02 Score=28.07 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q psy9724 21 KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFT 72 (140)
Q Consensus 21 ~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g 72 (140)
.-+-+||+..|+ ++.|||+...... ...+.+++.+.+-.++
T Consensus 67 ~~li~il~~lP~---~tkLVQVTg~~g~--------~~sL~~lArr~G~~~~ 107 (652)
T COG2433 67 RDLIRILKRLPE---GTKLVQVTGRPGE--------QESLWELARRHGIRVN 107 (652)
T ss_pred hHHHHHHHhCCC---CceEEEEeCCCCC--------cchHHHHHHHhCCCCC
Confidence 456678999997 4689999865322 3455778988766555
No 154
>PLN02757 sirohydrochlorine ferrochelatase
Probab=45.50 E-value=97 Score=23.03 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=27.7
Q ss_pred EEEecCccccCCHHHHHHHHHHHHHhCCCCCC-CeEEEEEecCC
Q psy9724 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLE-KVTLLQIAVPS 46 (140)
Q Consensus 4 il~VdRld~~KGi~~kl~A~~~~L~~~P~~~~-kv~Lvqi~~ps 46 (140)
++-|++=...+.-..-++.+.+.++..+.+.. ++.|+..+.|+
T Consensus 16 lllvgHGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFle~~~Ps 59 (154)
T PLN02757 16 VVIVDHGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHMELAEPS 59 (154)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEecCCCC
Confidence 34444444555566777888888877766643 56777777664
No 155
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.45 E-value=1.3e+02 Score=28.15 Aligned_cols=76 Identities=13% Similarity=0.227 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHH
Q psy9724 17 VHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 96 (140)
Q Consensus 17 ~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~ 96 (140)
+.|+.|++.+++.|.. +++=++| .+.. .+.+..++..+|. | ++++..+.+|+..++.
T Consensus 479 p~K~~~~~~Li~~he~-~g~kiLV-F~~~-----------~~~l~~~a~~L~~--------~--~I~G~ts~~ER~~il~ 535 (732)
T TIGR00603 479 PNKFRACQFLIRFHEQ-RGDKIIV-FSDN-----------VFALKEYAIKLGK--------P--FIYGPTSQQERMQILQ 535 (732)
T ss_pred hHHHHHHHHHHHHHhh-cCCeEEE-EeCC-----------HHHHHHHHHHcCC--------c--eEECCCCHHHHHHHHH
Confidence 4688999999987742 2322333 3311 2335556665531 2 5689999888888766
Q ss_pred Hc------CEEEECCCC-CCCceeee
Q psy9724 97 DA------AVALVTPLR-DEWSNSFS 115 (140)
Q Consensus 97 ~A------Dv~vvts~r-dGmnLvA~ 115 (140)
.- +++++|.+- +|+++-.+
T Consensus 536 ~Fr~~~~i~vLv~SkVgdeGIDlP~a 561 (732)
T TIGR00603 536 NFQHNPKVNTIFLSKVGDTSIDLPEA 561 (732)
T ss_pred HHHhCCCccEEEEecccccccCCCCC
Confidence 52 466666554 49999644
No 156
>PRK10945 gene expression modulator; Provisional
Probab=45.34 E-value=35 Score=22.67 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcC
Q psy9724 57 KEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAA 99 (140)
Q Consensus 57 ~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~AD 99 (140)
.+.+++.+++.| ..++.+|+.++|++||
T Consensus 21 ~eTLEkvie~~~---------------~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 21 IDTLERVIEKNK---------------YELSDDELAVFYSAAD 48 (72)
T ss_pred HHHHHHHHHHhh---------------ccCCHHHHHHHHHHHH
Confidence 456677777643 2456789999999998
No 157
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=44.47 E-value=1.2e+02 Score=27.25 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEE
Q psy9724 22 AFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVA 101 (140)
Q Consensus 22 A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~ 101 (140)
++++.++..+ .+++.++--+.....+.-.|.++.+++.+++.-+-+..|-.| +.+.+.-+...+-..++++.+-+.
T Consensus 14 ~~dr~~~~~~--~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gvkG--DrV~iymp~~pe~~~a~LA~~riG 89 (528)
T COG0365 14 ALDRHLEADR--PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKG--DRVAIYMPNSPEAVIALLATARIG 89 (528)
T ss_pred hhhhhhhccC--CCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCCCC--CEEEEEcCCCHHHHHHHHHHHHcC
Confidence 4555555443 346777766655444556799999999999999876665543 344445567888899999999998
Q ss_pred EEC-CCCCCCcee-----eecCCceeeecCCCCccc
Q psy9724 102 LVT-PLRDEWSNS-----FSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 102 vvt-s~rdGmnLv-----A~~~G~~~v~~~~gg~~~ 131 (140)
.+. ++..||.-= --+.+..+|-++.|+.+.
T Consensus 90 AI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~ 125 (528)
T COG0365 90 AIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRN 125 (528)
T ss_pred CEEeecccCCCHHHHHHHHHccCCCEEEEecccccc
Confidence 654 456666531 011134444455555554
No 158
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=44.17 E-value=1.7e+02 Score=23.56 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=57.5
Q ss_pred CCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee
Q psy9724 34 LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS 113 (140)
Q Consensus 34 ~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv 113 (140)
+.+|+||=-+.-. .++..|.++..+.-+. .|..+........+.+++......+|+..|.- -.-|||.
T Consensus 32 ~~~i~FIPtAs~~----~~~~~Yv~k~~~~l~~-------lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgG-GNTF~LL 99 (224)
T COG3340 32 RKTIAFIPTASVD----SEDDFYVEKVRNALAK-------LGLEVSELHLSKPPLAAIENKLMKADIIYVGG-GNTFNLL 99 (224)
T ss_pred CceEEEEecCccc----cchHHHHHHHHHHHHH-------cCCeeeeeeccCCCHHHHHHhhhhccEEEECC-chHHHHH
Confidence 5578886554433 3344566666666655 45667766666789999999999999999863 3345553
Q ss_pred --------------eecCCceeeecCCCCc
Q psy9724 114 --------------FSRSGNFRIKSAPSGN 129 (140)
Q Consensus 114 --------------A~~~G~~~v~~~~gg~ 129 (140)
+.++|+|.++--+|.+
T Consensus 100 ~~lke~gld~iIr~~vk~G~~YiG~SAGA~ 129 (224)
T COG3340 100 QELKETGLDDIIRERVKAGTPYIGWSAGAN 129 (224)
T ss_pred HHHHHhCcHHHHHHHHHcCCceEEeccCce
Confidence 5667888888777764
No 159
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=44.12 E-value=17 Score=27.29 Aligned_cols=70 Identities=16% Similarity=0.304 Sum_probs=34.2
Q ss_pred HHHHhCCCCCCCeEEE-EEecCCCCChhH--HHHHHHHHHHHHHHHhcCCC-CCCcccEEEEeCCCCHHHHHHHH
Q psy9724 25 TLLEKHPEHLEKVTLL-QIAVPSRTDVKE--YQDLKEEMDQLVGRINGRFT-TPNWSPIRYIYGCISQDELASFY 95 (140)
Q Consensus 25 ~~L~~~P~~~~kv~Lv-qi~~psr~~~~~--y~~~~~~l~~lv~~IN~~~g-~~~~~pv~~~~~~~~~~el~aly 95 (140)
.+|.-||++-++...- ..+..|+.+... ...+.++..+...+.|.+|- ..|+.=|+|..+. +.+++.+-+
T Consensus 54 ~ll~~HP~Lg~~~~~~~~ls~~S~~EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGfpFvi~v~g~-~~~~Il~~l 127 (157)
T TIGR03164 54 ALIRAHPDLAGKLAVAGELTAESTSEQASAGLDQLSQEEFARFTRLNNAYRARFGFPFIMAVKGK-TKQSILAAF 127 (157)
T ss_pred HHHHhCCcccccccccccchHhhHHHHHhccccCCCHHHHHHHHHHHHHHHHHCCCeeEEeeCCC-CHHHHHHHH
Confidence 4578899997765311 011111111100 00112233344455566553 2455667776765 788877654
No 160
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=43.92 E-value=58 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCCCCeEEE-------EEecCCCCChhHHHHHHHHHHHHHHHH
Q psy9724 23 FETLLEKHPEHLEKVTLL-------QIAVPSRTDVKEYQDLKEEMDQLVGRI 67 (140)
Q Consensus 23 ~~~~L~~~P~~~~kv~Lv-------qi~~psr~~~~~y~~~~~~l~~lv~~I 67 (140)
.+.+.+..|.+.+|+.++ .|-.|.....+.|++..+++.+.+..+
T Consensus 87 ~~~l~~~~p~~~~k~~~l~~~~~~~~I~DPy~~~~~~f~~~~~~I~~~i~~l 138 (144)
T PRK11391 87 IAQVTAIAPEVRGKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEW 138 (144)
T ss_pred HHHHHHHCCCCcCeEEehhHhCCCCCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 445566678777777654 344577777777887777776666543
No 161
>PRK14865 rnpA ribonuclease P; Provisional
Probab=43.46 E-value=82 Score=22.13 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=24.5
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q psy9724 36 KVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFT 72 (140)
Q Consensus 36 kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g 72 (140)
++++ ++-++.. ..+|+++.+++..+..+++.+|.
T Consensus 83 divi--i~r~~~~-~~~~~~l~~~l~~ll~~~~~~~~ 116 (116)
T PRK14865 83 DYNI--IAKKGAE-QLDFQQISRELANALERLRKKYA 116 (116)
T ss_pred CEEE--EEeCCcc-cCCHHHHHHHHHHHHHHHHhhcC
Confidence 4554 4555433 35688999999999999988773
No 162
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=43.03 E-value=1.8e+02 Score=23.66 Aligned_cols=39 Identities=3% Similarity=-0.058 Sum_probs=27.7
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeee
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIK 123 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~ 123 (140)
+.+..+-.|+.++++.||+++-+- -..|-+- |. |+|+|+
T Consensus 246 l~g~~sL~el~ali~~a~l~I~nD-TGp~HlAaA~--g~P~va 285 (348)
T PRK10916 246 LAGETQLEQAVILIAACKAIVTND-SGLMHVAAAL--NRPLVA 285 (348)
T ss_pred ccCCCCHHHHHHHHHhCCEEEecC-ChHHHHHHHh--CCCEEE
Confidence 357789999999999999776543 3344443 44 888875
No 163
>PRK10126 tyrosine phosphatase; Provisional
Probab=43.03 E-value=64 Score=23.39 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCCCCeEEEE-------EecCCCCChhHHHHHHHHHHHHHHH
Q psy9724 23 FETLLEKHPEHLEKVTLLQ-------IAVPSRTDVKEYQDLKEEMDQLVGR 66 (140)
Q Consensus 23 ~~~~L~~~P~~~~kv~Lvq-------i~~psr~~~~~y~~~~~~l~~lv~~ 66 (140)
.+.+.+..|++.+|+.++- |-.|.+.+.+.|++..++|.+.+..
T Consensus 87 ~~~l~~~~p~~~~k~~~l~~~~~~~~I~DP~~~~~~~f~~~~~~I~~~i~~ 137 (147)
T PRK10126 87 IERLCEMAPEMRGKVMLFGHWDNECEIPDPYRKSREAFEAVYTLLERSARQ 137 (147)
T ss_pred HHHHHHhcCcccCcEEehhhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445666788777776542 5567777667777666665544443
No 164
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=42.80 E-value=34 Score=27.17 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=39.2
Q ss_pred ccEEEEeCCCCHHHHHHHHHHcCEEEECCC----CCCCceeeecCCceeeecCCCCcccc
Q psy9724 77 SPIRYIYGCISQDELASFYRDAAVALVTPL----RDEWSNSFSRSGNFRIKSAPSGNRTH 132 (140)
Q Consensus 77 ~pv~~~~~~~~~~el~aly~~ADv~vvts~----rdGmnLvA~~~G~~~v~~~~gg~~~~ 132 (140)
..|..+...++.+....+++.+|+.+.+.- +.=+|-.+...+.|.|...++|...+
T Consensus 102 v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 161 (245)
T PRK05690 102 IAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQ 161 (245)
T ss_pred CEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCce
Confidence 346666778888888889999999988762 11122235566899999888776544
No 165
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=42.02 E-value=3e+02 Score=25.87 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=61.5
Q ss_pred EEEEecCccccCCHHHH-H---HHHHHHHHhCCCCCC-CeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy9724 3 LVLSVDRLDYTKGLVHR-L---KAFETLLEKHPEHLE-KVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 3 iil~VdRld~~KGi~~k-l---~A~~~~L~~~P~~~~-kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
+++.+-|+..=|=-.+. | .-+.+ +.++|+... .+++|--|-..-.+ ..-+++.+.+.++++.||..=.-.+.-
T Consensus 446 fdv~~rR~heYKRq~LniL~ii~~y~r-ik~~p~~~~~Pv~~IFaGKAhP~d-~~gK~iIk~I~~va~~in~Dp~v~~~l 523 (713)
T PF00343_consen 446 FDVQARRFHEYKRQLLNILHIIDRYNR-IKNNPNKKIRPVQFIFAGKAHPGD-YMGKEIIKLINNVAEVINNDPEVGDRL 523 (713)
T ss_dssp EEEEES-SCCCCTHHHHHHHHHHHHHH-HHHSTTSCCS-EEEEEE----TT--HHHHHHHHHHHHHHHHHCT-TTTCCGE
T ss_pred hhhhhhhcccccccCcccccHHHHHHH-HHhcccCCCCCeEEEEeccCCCCc-HHHHHHHHHHHHHHHHHhcChhhccce
Confidence 45678888888865553 2 33445 455776543 44555444433233 223467778888888888732211222
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeecCCCC
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSAPSG 128 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~~gg 128 (140)
-|+|+++ .+.+--.-++.++||-.-+|.+ ++=|| ||.=|+.+.-|
T Consensus 524 kVvFlen-YdvslA~~lipg~DVwln~p~~---p~EAS--GTSgMK~~~NG 568 (713)
T PF00343_consen 524 KVVFLEN-YDVSLAEKLIPGVDVWLNIPTR---PKEAS--GTSGMKAAMNG 568 (713)
T ss_dssp EEEEETT--SHHHHHHHGGG-SEEEE---T---TSSSS---SHHHHHHHTT
T ss_pred eEEeecC-CcHHHHHHHhhhhhhhhhCCCC---Ccccc--CCCcchhhcCC
Confidence 4667654 3444445689999999999987 34466 66555544444
No 166
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=41.77 E-value=34 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.1
Q ss_pred hHHHH-HHHHHHHHHHHHhcCCCCCCcc
Q psy9724 51 KEYQD-LKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 51 ~~y~~-~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
.||+. +++.++++++.|..+++...+.
T Consensus 46 ~DYH~vlk~~L~~l~~~i~~~~~~~~~r 73 (78)
T PF08331_consen 46 RDYHKVLKKKLEQLAEWIRELGPDFEYR 73 (78)
T ss_pred CChHHHHHHHHHHHHHHHHHHCCCCCeE
Confidence 67876 9999999999999999765443
No 167
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=41.58 E-value=55 Score=24.39 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=25.1
Q ss_pred EecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEE
Q psy9724 6 SVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQI 42 (140)
Q Consensus 6 ~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi 42 (140)
|+.++.+.......++|+.+|+.+++..-.+|.|+-.
T Consensus 124 G~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~ 160 (175)
T cd02907 124 GIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDY 160 (175)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEEC
Confidence 4455666667777888888888887655555655543
No 168
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.78 E-value=2e+02 Score=23.15 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=27.7
Q ss_pred EeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeee
Q psy9724 82 IYGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIK 123 (140)
Q Consensus 82 ~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~ 123 (140)
+.+..+..|+.++++.||.++-+- ..+|-+- |. |+|+|+
T Consensus 236 l~g~~sL~el~ali~~a~l~I~~D-SGp~HlAaA~--~~P~i~ 275 (334)
T TIGR02195 236 LAGETSLDEAVDLIALAKAVVTND-SGLMHVAAAL--NRPLVA 275 (334)
T ss_pred CCCCCCHHHHHHHHHhCCEEEeeC-CHHHHHHHHc--CCCEEE
Confidence 356779999999999999877553 2334443 55 888875
No 169
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=39.68 E-value=1.7e+02 Score=22.61 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHH
Q psy9724 14 KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELAS 93 (140)
Q Consensus 14 KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~a 93 (140)
.-+...|..+..||+.|| +.++++.+-.-...... ..-.++.+.|++.||+....+-.......+.+|+..
T Consensus 79 ~~~~~vL~~i~~fl~~~p---~E~vil~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~ptL~el~~ 149 (271)
T cd08557 79 QTLEDVLNEVKDFLDAHP---SEVVILDLEHEYGGDNG------EDHDELDALLRDVLGDPLYRPPVRAGGWPTLGELRA 149 (271)
T ss_pred ccHHHHHHHHHHHHHHCC---CcEEEEEEEccCCCcch------hhHHHHHHHHHHHhCccccCCccccCCCCcHHHHhc
Confidence 456778999999999999 45777766544332211 122344555555566543322111233456666543
No 170
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=39.28 E-value=1.4e+02 Score=21.36 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=48.8
Q ss_pred EEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeC
Q psy9724 5 LSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYG 84 (140)
Q Consensus 5 l~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~ 84 (140)
+-+++=.+..--..-++.+.+.++..|++.=...|+..+.|+ +.+.+.+++++ -+...-..|+....+
T Consensus 4 llvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~---------l~~~l~~l~~~---G~~~ivVvPlFL~~G 71 (125)
T cd03415 4 IIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPN---------WRDLLNELLSE---GYGHIIIALAFLGRG 71 (125)
T ss_pred EEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCC---------HHHHHHHHHHC---CCCEEEEehhhccCC
Confidence 334444444456677788888888787765456777777773 45566666653 112222234444456
Q ss_pred CCCHHHHHHHHHH
Q psy9724 85 CISQDELASFYRD 97 (140)
Q Consensus 85 ~~~~~el~aly~~ 97 (140)
....+++++....
T Consensus 72 ~Hv~~DiP~~l~~ 84 (125)
T cd03415 72 NHVARDIMGELGV 84 (125)
T ss_pred cchHHHHHHHHHh
Confidence 6677777777765
No 171
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=38.71 E-value=25 Score=26.98 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCC------ceeeecCCceeeecCCCCcccc
Q psy9724 59 EMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEW------SNSFSRSGNFRIKSAPSGNRTH 132 (140)
Q Consensus 59 ~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGm------nLvA~~~G~~~v~~~~gg~~~~ 132 (140)
..+.++++|+.... +..+..+...++.+.+..+++.+|+.+.+. |.+ |-.+...+.|.|.+...|...|
T Consensus 76 Ka~~~~~~l~~~np---~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~--d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~ 150 (202)
T TIGR02356 76 KVEVAAQRLRELNS---DIQVTALKERVTAENLELLINNVDLVLDCT--DNFATRYLINDACVALGTPLISAAVVGFGGQ 150 (202)
T ss_pred HHHHHHHHHHHhCC---CCEEEEehhcCCHHHHHHHHhCCCEEEECC--CCHHHHHHHHHHHHHcCCCEEEEEeccCeEE
Confidence 33444455544322 234555567778888888999999988774 332 3346667899999888777665
Q ss_pred cc
Q psy9724 133 DL 134 (140)
Q Consensus 133 ~~ 134 (140)
-.
T Consensus 151 ~~ 152 (202)
T TIGR02356 151 LM 152 (202)
T ss_pred EE
Confidence 43
No 172
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=37.91 E-value=46 Score=25.88 Aligned_cols=57 Identities=9% Similarity=0.001 Sum_probs=38.8
Q ss_pred ccEEEEeCCCCHHHHHHHHHHcCEEEECCCCC-C---CceeeecCCceeeecCCCCccccc
Q psy9724 77 SPIRYIYGCISQDELASFYRDAAVALVTPLRD-E---WSNSFSRSGNFRIKSAPSGNRTHD 133 (140)
Q Consensus 77 ~pv~~~~~~~~~~el~aly~~ADv~vvts~rd-G---mnLvA~~~G~~~v~~~~gg~~~~~ 133 (140)
..|..+...++.+.+..++..+|+.+.+.-.- . +|-.+...+.|.|...+.|...|-
T Consensus 91 ~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 91 VEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred CEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 34556666777888888999999988763211 1 232355678999988888876653
No 173
>PLN02885 nicotinate phosphoribosyltransferase
Probab=37.66 E-value=3.1e+02 Score=24.82 Aligned_cols=110 Identities=18% Similarity=0.154 Sum_probs=63.9
Q ss_pred EEEEecCccc-cCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccE-E
Q psy9724 3 LVLSVDRLDY-TKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI-R 80 (140)
Q Consensus 3 iil~VdRld~-~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv-~ 80 (140)
.|+=||..|- ..|++.-+..+..+ ... ..+.. .-|.+..|-..+-.++.++.+++..+++..+...+ +
T Consensus 282 ~i~LvDTyd~l~sg~~n~~~v~~~l-~~~---g~~~~------GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kI 351 (545)
T PLN02885 282 FLALVDTYDVMKSGIPNFCAVALAL-NDL---GYKAV------GIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSI 351 (545)
T ss_pred eEEEEEccccHHHHHHHHHHHHHHH-Hhc---CcccC------eeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEE
Confidence 4556777763 34766666543332 111 00111 11222233345667778888877778887777766 6
Q ss_pred EEeCCCCHHHHHHHHHH---cCEEE-ECCC-----CCCCcee----eecCCceeee
Q psy9724 81 YIYGCISQDELASFYRD---AAVAL-VTPL-----RDEWSNS----FSRSGNFRIK 123 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~---ADv~v-vts~-----rdGmnLv----A~~~G~~~v~ 123 (140)
+..++++.+.+..|.+. .|.+= =|.+ .-.+|.| +| +|.|+++
T Consensus 352 v~Sn~Lde~~i~~L~~~g~~id~fGVGT~LvT~~~~p~l~~VyKLVe~-~g~p~~K 406 (545)
T PLN02885 352 TASNDINEETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEI-NGQPRIK 406 (545)
T ss_pred EEeCCCCHHHHHHHHHcCCCccEEecCCccccCCCCCCCceEEEEEEE-CCeeeeE
Confidence 77889999999999877 34431 1222 2335554 55 6788876
No 174
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=37.65 E-value=1.1e+02 Score=24.14 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHcCEEEECCCCCCCcee--eecCCceeeecCC
Q psy9724 86 ISQDELASFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSAP 126 (140)
Q Consensus 86 ~~~~el~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~~ 126 (140)
.+..++..+++.||+++..+ |.|++ |+.-|+|.+.=..
T Consensus 239 ~~~~~~~~~m~~ad~vIs~~---G~~t~~Ea~~~g~P~l~ip~ 278 (318)
T PF13528_consen 239 FSTPDFAELMAAADLVISKG---GYTTISEALALGKPALVIPR 278 (318)
T ss_pred cChHHHHHHHHhCCEEEECC---CHHHHHHHHHcCCCEEEEeC
Confidence 45578889999999999874 77854 3333999876443
No 175
>PRK15005 universal stress protein F; Provisional
Probab=37.61 E-value=1.3e+02 Score=20.57 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHH--HcCEEEECCCCCCC
Q psy9724 85 CISQDELASFYR--DAAVALVTPLRDEW 110 (140)
Q Consensus 85 ~~~~~el~aly~--~ADv~vvts~rdGm 110 (140)
.-+.+++..+-. .+|..++.+.+.|+
T Consensus 93 G~p~~~I~~~a~~~~~DLIV~Gs~~~~~ 120 (144)
T PRK15005 93 GSPKDRILELAKKIPADMIIIASHRPDI 120 (144)
T ss_pred CCHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 346777877644 79999998875443
No 176
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=37.21 E-value=1.2e+02 Score=23.55 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccE--EEEeCCCCHHHHHHHHHH------cCEEEECCCCCCCc
Q psy9724 54 QDLKEEMDQLVGRINGRFTTPNWSPI--RYIYGCISQDELASFYRD------AAVALVTPLRDEWS 111 (140)
Q Consensus 54 ~~~~~~l~~lv~~IN~~~g~~~~~pv--~~~~~~~~~~el~aly~~------ADv~vvts~rdGmn 111 (140)
++..+++.+++++||..|+.. .|+ -.+.|++... .-|.++ -|-..++|+..|+-
T Consensus 15 e~I~~ri~ela~~I~~~y~g~--~~~vv~iLkGs~~F~--~dL~r~i~~~~e~dFm~vSSYg~~t~ 76 (178)
T COG0634 15 EQIKARIKELAAQITEDYGGK--DPLVVGVLKGSFPFM--ADLIRAIDFPLEVDFMHVSSYGGGTS 76 (178)
T ss_pred HHHHHHHHHHHHHHHHhhCCC--ceEEEEEcccchhhH--HHHHHhcCCCceeEEEEEeccCCCcc
Confidence 478999999999999999862 343 2345665553 233333 45677888888774
No 177
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=36.85 E-value=99 Score=22.93 Aligned_cols=67 Identities=22% Similarity=0.479 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHH
Q psy9724 18 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRD 97 (140)
Q Consensus 18 ~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ 97 (140)
.-.+.+..|+++| +.-+|.|+..++ +.+.+.+.+.+++.+... ...+.+|.++. =.++.+.+|..
T Consensus 50 ~~~~~l~~~i~~~-----kP~vI~v~g~~~----~s~~l~~~v~~~v~~~~~---~~~~~~i~V~~---v~~~~A~lY~~ 114 (150)
T PF14639_consen 50 EDMERLKKFIEKH-----KPDVIAVGGNSR----ESRKLYDDVRDIVEELDE---DEQMPPIPVVI---VDDEVARLYSN 114 (150)
T ss_dssp HHHHHHHHHHHHH-------SEEEE--SST----HHHHHHHHHHHHHHHTTB----TTS-B--EEE------TTHHHHHT
T ss_pred HHHHHHHHHHHHc-----CCeEEEEcCCCh----hHHHHHHHHHHHHHHhhh---cccCCCceEEE---ECcHHHHHHhc
Confidence 4445666777765 223566654432 334677777888877642 12233433322 23456777776
Q ss_pred cC
Q psy9724 98 AA 99 (140)
Q Consensus 98 AD 99 (140)
++
T Consensus 115 S~ 116 (150)
T PF14639_consen 115 SK 116 (150)
T ss_dssp SH
T ss_pred CH
Confidence 64
No 178
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=36.51 E-value=47 Score=26.32 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCC----CCceeeecCCceeeecCCCCcccc
Q psy9724 61 DQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD----EWSNSFSRSGNFRIKSAPSGNRTH 132 (140)
Q Consensus 61 ~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rd----GmnLvA~~~G~~~v~~~~gg~~~~ 132 (140)
.+...++|. +..|..+...++.+....++..+|+.+...-.- =+|-.+.+.|.|.|...+-|...|
T Consensus 84 ~~~l~~inp------~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 153 (240)
T TIGR02355 84 KDALTQINP------HIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQ 153 (240)
T ss_pred HHHHHHHCC------CcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeE
Confidence 344555553 344666677888888889999999998776321 134346677899888766655444
No 179
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=35.88 E-value=1.5e+02 Score=21.53 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=23.7
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHHHhc
Q psy9724 37 VTLLQIAVPSRTDVKEYQDLKEEMDQLVGRING 69 (140)
Q Consensus 37 v~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~ 69 (140)
+.++.+..+......+|+++.+++.++..+|..
T Consensus 100 ~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ri~~ 132 (133)
T PRK01903 100 LAIAFLYTGRSDEIPSLAEFRREMRKLLQRIRE 132 (133)
T ss_pred eEEEEEEeccccccCCHHHHHHHHHHHHHHHhh
Confidence 345666655444446788999999999998854
No 180
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=35.87 E-value=2.8e+02 Score=26.86 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHH--
Q psy9724 16 LVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELAS-- 93 (140)
Q Consensus 16 i~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~a-- 93 (140)
.+.|+.++-.+++.+..- | .+.++.. ++.+..+.+.+..++ |+..+ .+++.++..++..
T Consensus 477 ~d~Ki~~L~~~L~~~~~~--K--vLVF~~~-----------~~t~~~L~~~L~~~~---Gi~~~-~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 477 FDPRVEWLIDFLKSHRSE--K--VLVICAK-----------AATALQLEQALRERE---GIRAA-VFHEGMSIIERDRAA 537 (956)
T ss_pred cCHHHHHHHHHHHhcCCC--e--EEEEeCc-----------HHHHHHHHHHHhhcc---CeeEE-EEECCCCHHHHHHHH
Confidence 346788888888877522 2 3333422 333444555553333 34444 5688888777654
Q ss_pred -HHHH----cCEEEECCC-CCCCceeee
Q psy9724 94 -FYRD----AAVALVTPL-RDEWSNSFS 115 (140)
Q Consensus 94 -ly~~----ADv~vvts~-rdGmnLvA~ 115 (140)
.++. +.|++.|.+ .+|+|+-.+
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNlq~a 565 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNFQFA 565 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCcccc
Confidence 4443 668888876 489998644
No 181
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=35.24 E-value=77 Score=21.29 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCCcccEEEE---eCCCCHHHHHHHHHHcCE
Q psy9724 61 DQLVGRINGRFTTPNWSPIRYI---YGCISQDELASFYRDAAV 100 (140)
Q Consensus 61 ~~lv~~IN~~~g~~~~~pv~~~---~~~~~~~el~aly~~ADv 100 (140)
++|.+.|.++||.. ..|. ...++.++|..++..=.=
T Consensus 21 ~~L~~~i~~~FG~~----arFhTCSa~~m~a~~Li~FL~~kgK 59 (77)
T TIGR03853 21 ESLKAAIEQKFGED----ARFHTCSAEGMTADELLQFLLKKGK 59 (77)
T ss_pred HHHHHHHHHHhCCC----ceEeecccccCCHHHHHHHHHHCCC
Confidence 45778888899974 3344 478999999998865433
No 182
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=34.88 E-value=22 Score=28.47 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=39.0
Q ss_pred CCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE--------eCCCCHHHHHHHHHHcCEEEEC
Q psy9724 33 HLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI--------YGCISQDELASFYRDAAVALVT 104 (140)
Q Consensus 33 ~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~--------~~~~~~~el~aly~~ADv~vvt 104 (140)
...++.+||+.+....... | .-.+-+.+++++.++++-.. ..|...- ...-...+...+|+.+|+.++.
T Consensus 75 ~~~~~~vV~l~Gg~~~~~~-~-~~~~i~~~lA~~~g~~~~~l-~aP~~~~s~~~~~~l~~~~~i~~~l~~~~~~dial~g 151 (255)
T PF04198_consen 75 SLPNVTVVPLIGGVGNSNS-Y-QANEIARRLAEKLGGKYYFL-PAPAFVDSPELRDALLAEPSIREVLDLARKADIALVG 151 (255)
T ss_dssp SSSCEEEEESBSBTTTSSG-G-SHHHHHHHHHHHHTSEEE----SBSB-SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEE
T ss_pred CCCCcEEEECCCCCCCCCC-c-CHHHHHHHHHHHhCCcEEEE-eCCccCCCHHHHHHHHhChHHHHHHHHHHhCCEEEEe
Confidence 4557889998665444333 3 23355667777777665432 3344321 1222446667889999999873
No 183
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=34.08 E-value=54 Score=21.69 Aligned_cols=28 Identities=25% Similarity=0.529 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCCCCCcccEEEEeCCCC-HHHHHHHHHHcC
Q psy9724 57 KEEMDQLVGRINGRFTTPNWSPIRYIYGCIS-QDELASFYRDAA 99 (140)
Q Consensus 57 ~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~-~~el~aly~~AD 99 (140)
.+.++++.+++|-+ ++ .+|+.++|++||
T Consensus 16 ~eTLEkv~e~~~y~---------------L~~~~e~~~f~~AaD 44 (71)
T PRK10391 16 LESLEKLFDHLNYT---------------LTDDQEIINMYRAAD 44 (71)
T ss_pred HHHHHHHHHHhhcc---------------cCCHHHHHHHHHHHH
Confidence 46677888876532 22 388999999988
No 184
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.41 E-value=51 Score=22.13 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCCCCCcccEEE-EeCCCCHHH--HHHHHHHcCEEEECCCCCCCce---e---eecCCceeeecCCC
Q psy9724 57 KEEMDQLVGRINGRFTTPNWSPIRY-IYGCISQDE--LASFYRDAAVALVTPLRDEWSN---S---FSRSGNFRIKSAPS 127 (140)
Q Consensus 57 ~~~l~~lv~~IN~~~g~~~~~pv~~-~~~~~~~~e--l~aly~~ADv~vvts~rdGmnL---v---A~~~G~~~v~~~~g 127 (140)
...+.+++++. |+..+++ ..+.....+ +......||++++..=+=+=++ + |.+.|.|++-+.-.
T Consensus 12 ~~~~~~~~~~~-------G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 12 ERRYKRILEKY-------GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HHHHHHHHHHc-------CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCC
Confidence 34445566653 2344433 023334444 8888899999887654433333 3 77778899888755
Q ss_pred Ccc
Q psy9724 128 GNR 130 (140)
Q Consensus 128 g~~ 130 (140)
|..
T Consensus 85 ~~~ 87 (97)
T PF10087_consen 85 GVS 87 (97)
T ss_pred CHH
Confidence 543
No 185
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=32.24 E-value=2.6e+02 Score=22.25 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=59.7
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE
Q psy9724 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82 (140)
Q Consensus 3 iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~ 82 (140)
+++|-.|+.-..=+.....-+..|+.+.| +|++|=. .....+|..+.++..+.-.+++ ..+...
T Consensus 4 ll~s~~~~~~~~~l~~~~~~~~~~~~~~~----~v~fIPt----As~~~~~~~y~~~~~~af~~lG-------~~v~~l- 67 (233)
T PRK05282 4 LLLSNSTLPGTGYLEHALPLIAELLAGRR----KAVFIPY----AGVTQSWDDYTAKVAEALAPLG-------IEVTGI- 67 (233)
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHcCCC----eEEEECC----CCCCCCHHHHHHHHHHHHHHCC-------CEEEEe-
Confidence 56777787775545677777788877333 4555332 2222445555566666665543 343322
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCCCCCcee--------------eecCCceeeecCCCC
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLRDEWSNS--------------FSRSGNFRIKSAPSG 128 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~rdGmnLv--------------A~~~G~~~v~~~~gg 128 (140)
... ++..+.+..||+.+++ =-+-++|. +.++|.|.+++-+|.
T Consensus 68 ~~~---~d~~~~l~~ad~I~v~-GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 68 HRV---ADPVAAIENAEAIFVG-GGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred ccc---hhhHHHHhcCCEEEEC-CccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 211 3445678899966665 33333332 445677777776665
No 186
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=32.17 E-value=1e+02 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q psy9724 53 YQDLKEEMDQLVGRINGRFTT 73 (140)
Q Consensus 53 y~~~~~~l~~lv~~IN~~~g~ 73 (140)
++++.+.+.+++.+|+..|+.
T Consensus 5 ~~~i~~~i~~lA~~I~~~~~~ 25 (166)
T TIGR01203 5 EEQIKARIAELAKQITEDYAG 25 (166)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 568899999999999998854
No 187
>PRK14852 hypothetical protein; Provisional
Probab=31.70 E-value=1.2e+02 Score=29.59 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCce--------eeecCCceeeecCCCCcc
Q psy9724 59 EMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSN--------SFSRSGNFRIKSAPSGNR 130 (140)
Q Consensus 59 ~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnL--------vA~~~G~~~v~~~~gg~~ 130 (140)
.+.+.+.+||. .-.|..+...++.+....++...|+++... |.+.+ .|.+.|.|+|.+.+.|..
T Consensus 390 vaa~~l~~INP------~v~I~~~~~~I~~en~~~fl~~~DiVVDa~--D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 390 VMTERALSVNP------FLDIRSFPEGVAAETIDAFLKDVDLLVDGI--DFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred HHHHHHHHHCC------CCeEEEEecCCCHHHHHHHhhCCCEEEECC--CCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 34556667775 345777778899999999999999998533 54443 156779999999998887
Q ss_pred cccc
Q psy9724 131 THDL 134 (140)
Q Consensus 131 ~~~~ 134 (140)
.+-.
T Consensus 462 g~v~ 465 (989)
T PRK14852 462 CALL 465 (989)
T ss_pred eeEE
Confidence 6644
No 188
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=31.65 E-value=36 Score=25.56 Aligned_cols=71 Identities=20% Similarity=0.080 Sum_probs=33.0
Q ss_pred HHHHHhCCCCCCCeEEEE-EecCCCCChhHHHHHHHHHHHHHHHHhcCCC-CCCcccEEEEeCCCCHHHHHHHH
Q psy9724 24 ETLLEKHPEHLEKVTLLQ-IAVPSRTDVKEYQDLKEEMDQLVGRINGRFT-TPNWSPIRYIYGCISQDELASFY 95 (140)
Q Consensus 24 ~~~L~~~P~~~~kv~Lvq-i~~psr~~~~~y~~~~~~l~~lv~~IN~~~g-~~~~~pv~~~~~~~~~~el~aly 95 (140)
..+|+-||++-++...-- .+.-|+.....-..+.++..+...+.|.+|- ..|+.=|++..+ -+.+++.+-+
T Consensus 55 ~~~l~~HP~lg~~~~~~~~~~~~S~~EQagl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v~g-~s~~~IL~~l 127 (158)
T TIGR03180 55 FEALAGHPRIGEKPAGQAAYAATSRREQAGVDGADEETRAALLEGNAAYEEKFGRIFLIRAAG-RSAEEMLDAL 127 (158)
T ss_pred HHHHHhCCcccCccccccchhhhhHHHHhcccCCCHHHHHHHHHHHHHHHHHCCCeEEEeeCC-CCHHHHHHHH
Confidence 346888999977654211 1111111110001122223334445555552 234555767664 4677776644
No 189
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=31.63 E-value=2.3e+02 Score=21.47 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=26.9
Q ss_pred EEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeeec
Q psy9724 79 IRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIKS 124 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~~ 124 (140)
+.-+.+..+..|+.++.+.||+++-+-. -.|-|- |. |+|+|+=
T Consensus 165 ~~~~~~~~~l~e~~ali~~a~~~I~~Dt-g~~HlA~a~--~~p~v~l 208 (247)
T PF01075_consen 165 VINLAGKTSLRELAALISRADLVIGNDT-GPMHLAAAL--GTPTVAL 208 (247)
T ss_dssp TEEETTTS-HHHHHHHHHTSSEEEEESS-HHHHHHHHT--T--EEEE
T ss_pred eEeecCCCCHHHHHHHHhcCCEEEecCC-hHHHHHHHH--hCCEEEE
Confidence 4445677899999999999999876532 223332 44 7777653
No 190
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=31.47 E-value=2.7e+02 Score=24.11 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=31.5
Q ss_pred CCCCcccEEEEeC-CCCHHHHHHHHHH----cCEE------EECCCCCCCcee----eecCCceeee
Q psy9724 72 TTPNWSPIRYIYG-CISQDELASFYRD----AAVA------LVTPLRDEWSNS----FSRSGNFRIK 123 (140)
Q Consensus 72 g~~~~~pv~~~~~-~~~~~el~aly~~----ADv~------vvts~rdGmnLv----A~~~G~~~v~ 123 (140)
-..|+.|+..+.. ....+.....|+. .|++ ...+-++.+|.| +| +|.|+++
T Consensus 286 d~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~~d~FGvGT~L~~~~~~~~~~~v~Klvev-~g~p~~K 351 (405)
T COG1488 286 DKLGYDPVKIIVSDGLLDEKIIALLRAFGARNDAFGVGTNLTTAKPRPPLDIVYKLVEV-NGKPVAK 351 (405)
T ss_pred HHcCCCceEEEEeCCcchHHHHHHHHHhCCCccEeccchhhccCCCCCcceeEEEEEEE-CCcccee
Confidence 3467788776665 7888888999998 3332 112225556766 44 4566543
No 191
>PRK11118 putative monooxygenase; Provisional
Probab=31.35 E-value=1.3e+02 Score=21.23 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=25.5
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q psy9724 38 TLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFT 72 (140)
Q Consensus 38 ~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g 72 (140)
.++|+--|-.+...+ ++...+..||+.||++=|
T Consensus 3 ~lLQvdF~~~GP~g~--em~~~~~~LA~sI~~EpG 35 (100)
T PRK11118 3 TLLQVDFPFNGPFGE--EMAKALKPLAESINEEPG 35 (100)
T ss_pred eEEEEeccCCCCcHH--HHHHHHHHHHHHHhcCCC
Confidence 578988776554433 788899999999999755
No 192
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=31.04 E-value=1.9e+02 Score=23.71 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCC
Q psy9724 13 TKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGC 85 (140)
Q Consensus 13 ~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~ 85 (140)
-+||+.- |++.++++||.- +++||- .+.+.. ....++.+.+++.|.+||..--.++..+.++
T Consensus 127 dRGID~~--AL~~I~~~H~~~--~ivFVD---GWTGKG----aI~~eL~~al~~~~~~~~~~~~~~LaVLaDp 188 (257)
T PF11202_consen 127 DRGIDEN--ALRYILARHPPE--SIVFVD---GWTGKG----AITRELKKALAAFNARYGTRLSPDLAVLADP 188 (257)
T ss_pred CCCCCHH--HHHHHHHhCCCc--ceEEEe---cCcccc----HHHHHHHHHHHHHHhhcCCCCCCCeEEEecC
Confidence 3688875 999999999964 566653 333221 4567778888899999885222234444433
No 193
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=30.99 E-value=3e+02 Score=23.85 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=34.3
Q ss_pred EEEEeCCCCHHHHHHHHHHc-----CEE-----EECCC--CCCCcee----eecCCceeee-cCCCCccc
Q psy9724 79 IRYIYGCISQDELASFYRDA-----AVA-----LVTPL--RDEWSNS----FSRSGNFRIK-SAPSGNRT 131 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~A-----Dv~-----vvts~--rdGmnLv----A~~~G~~~v~-~~~gg~~~ 131 (140)
..++.+.++.+....|++.. |.+ ++|+. ...||.| +| +|.|+|+ |..-|.-|
T Consensus 309 ~Iv~S~~Lde~~i~~L~~~~~~~i~~~fGIGT~Lt~~~~~~p~l~~V~KLv~~-~g~P~~KlSd~~~K~t 377 (400)
T PRK05321 309 TLVFSDGLDFDKALELYRHFKGRIKLSFGIGTNLTNDFPGVKPLNIVIKLVEC-NGRPVAKLSDSPGKTM 377 (400)
T ss_pred EEEEeCCCCHHHHHHHHHHhcCCCcceEecCcceecCCCCCCCcceEEEEEEE-CCeeeEEecCCCcccC
Confidence 35668899999999998862 221 45555 5568876 66 6889886 44444443
No 194
>PRK03103 DNA polymerase IV; Reviewed
Probab=30.96 E-value=1.7e+02 Score=24.71 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=37.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC-------ChhHHHHHHHHHHHHHHHHhcCCCCC
Q psy9724 12 YTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRT-------DVKEYQDLKEEMDQLVGRINGRFTTP 74 (140)
Q Consensus 12 ~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~-------~~~~y~~~~~~l~~lv~~IN~~~g~~ 74 (140)
++--....+.+...+|++.+ ....+.++.+....-. +.-+...-.+.+.+++++||.+||..
T Consensus 315 pt~~~~~l~~~~~~ll~~~~-~~~~vr~lgv~~~~l~~~~~~q~~LF~~~~~~~~l~~~ld~l~~r~G~~ 383 (409)
T PRK03103 315 PTNLAMEVYEAACKLFHRHW-DGKPVRRVGVTLSNLVSDDVWQLSLFGDRERKRSLGYVMDDIKNRFGPT 383 (409)
T ss_pred CCCCHHHHHHHHHHHHHhcc-cCCCceEEEEEEeCCCCCcccCCCcccchhhHHHHHHHHHHHHHhhChh
Confidence 44445677788888888775 3345666666432111 11011112457889999999999974
No 195
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=30.94 E-value=2.6e+02 Score=21.90 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=25.0
Q ss_pred EEEecCccccCC---HHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Q psy9724 4 VLSVDRLDYTKG---LVHRLKAFETLLEKHPEHLEKVTLLQIAVP 45 (140)
Q Consensus 4 il~VdRld~~KG---i~~kl~A~~~~L~~~P~~~~kv~Lvqi~~p 45 (140)
|+.+|-+|.+.- -..--.+++.+++...+.+++++++-.+.+
T Consensus 108 VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~ 152 (261)
T TIGR02881 108 VLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYS 152 (261)
T ss_pred EEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCc
Confidence 566777766431 111234666677776667777777666554
No 196
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=30.77 E-value=72 Score=23.89 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=33.6
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCce------eeecC-CceeeecCCC
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPLRDEWSN------SFSRS-GNFRIKSAPS 127 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnL------vA~~~-G~~~v~~~~g 127 (140)
.+..+...++.+....++..+|+.+.. -|-+.. .+|+. +.|.|.+.+.
T Consensus 69 ~i~~~~~~~~~~~~~~~l~~~DlVi~~--~d~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 69 KIEAINIKIDENNLEGLFGDCDIVVEA--FDNAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred EEEEEEeecChhhHHHHhcCCCEEEEC--CCCHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 355566777888788899999998887 444433 16666 8888876443
No 197
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=30.52 E-value=1.9e+02 Score=20.31 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=21.3
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHHHHHHHh
Q psy9724 38 TLLQIAVPSRTDVKEYQDLKEEMDQLVGRIN 68 (140)
Q Consensus 38 ~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN 68 (140)
-+|.++-+.-. ..+|+++.+++..+..++|
T Consensus 84 diVviar~~~~-~~~~~~l~~~l~~ll~k~~ 113 (114)
T PRK01732 84 DFVVIAKKGVA-DLDNRELFELLEKLWRRHS 113 (114)
T ss_pred eEEEEeCCCcc-cCCHHHHHHHHHHHHHHhh
Confidence 45555655433 3568899999999998876
No 198
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=30.48 E-value=2.7e+02 Score=21.87 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=61.4
Q ss_pred EEEEecCc---cccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCC------
Q psy9724 3 LVLSVDRL---DYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT------ 73 (140)
Q Consensus 3 iil~VdRl---d~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~------ 73 (140)
+|++.... ..++|...=.++++++|++- .+ +|.. .-.. +..++.+.+.++++++|.+-++
T Consensus 12 lII~n~~f~~~~~r~g~~~D~~~l~~~f~~l-gF--~V~~--~~dl------t~~em~~~l~~~~~~~~~~~~d~~v~~~ 80 (241)
T smart00115 12 LIINNENFHSLPRRNGTDVDAENLTELFQSL-GY--EVHV--KNNL------TAEEMLEELKEFAERPEHSDSDSFVCVL 80 (241)
T ss_pred EEEECccCCCCcCCCCcHHHHHHHHHHHHHC-CC--EEEE--ecCC------CHHHHHHHHHHHHhccccCCCCEEEEEE
Confidence 56666654 47788888889999999853 12 2221 1112 2347888888888766532111
Q ss_pred --CCcccEEEEe-C-CCCHHHHHHHHHHcCEEEECCCCCCCcee---eecC
Q psy9724 74 --PNWSPIRYIY-G-CISQDELASFYRDAAVALVTPLRDEWSNS---FSRS 117 (140)
Q Consensus 74 --~~~~pv~~~~-~-~~~~~el~aly~~ADv~vvts~rdGmnLv---A~~~ 117 (140)
-|.....+-. + .++.+++...++.+.+ ++++.--+|+ |||.
T Consensus 81 ~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c---~~L~~kPKlffiqACRg 128 (241)
T smart00115 81 LSHGEEGGIYGTDHSPLPLDEIFSLFNGDNC---PSLAGKPKLFFIQACRG 128 (241)
T ss_pred cCCCCCCeEEEecCCEEEHHHHHHhccccCC---hhhcCCCcEEEEeCCCC
Confidence 1222222211 2 5788888887766554 7888888887 8853
No 199
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.41 E-value=44 Score=22.21 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHH-hCCCCCCC
Q psy9724 15 GLVHRLKAFETLLE-KHPEHLEK 36 (140)
Q Consensus 15 Gi~~kl~A~~~~L~-~~P~~~~k 36 (140)
-+.++++++|+.|. ++|+||.+
T Consensus 53 rm~eRI~tLE~ILd~e~P~wR~~ 75 (75)
T TIGR02976 53 RLEERIDTLERILDAEHPNWRRR 75 (75)
T ss_pred HHHHHHHHHHHHHcCCCcCcccC
Confidence 46789999999775 68999864
No 200
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=30.01 E-value=1.1e+02 Score=20.59 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCce
Q psy9724 61 DQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSN 112 (140)
Q Consensus 61 ~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnL 112 (140)
++|.+.|..+||... +=-.+....++.++|..++..=.=++.+ -+||..
T Consensus 23 ~~L~~ai~~~FG~~a-rFhTCSae~m~a~eLv~FL~~rgKfi~~--~~g~t~ 71 (78)
T PF10678_consen 23 EELKAAIIEKFGEDA-RFHTCSAEGMTADELVDFLEERGKFIPS--DDGFTV 71 (78)
T ss_pred HHHHHHHHHHhCCCc-eEEecCCCCCCHHHHHHHHHHcCCEeec--CCCEEE
Confidence 567888889999742 1122334789999999988765554433 455543
No 201
>KOG1939|consensus
Probab=29.48 E-value=76 Score=30.63 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=58.2
Q ss_pred EEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHH-HHHHHcCEEEECCCC-----CCCce
Q psy9724 39 LLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELA-SFYRDAAVALVTPLR-----DEWSN 112 (140)
Q Consensus 39 Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~-aly~~ADv~vvts~r-----dGmnL 112 (140)
|-.|-.|...+.=+-...+++.++|.++||. ++...++.||.+ .+.++|+=.++-|+| -|+|.
T Consensus 403 FPkIFGPnEdesld~e~tr~kF~eL~~~IN~-----------~l~s~~t~eevA~GFi~VANEtMcRPIR~lTesrG~d~ 471 (1247)
T KOG1939|consen 403 FPKIFGPNEDESLDVEITREKFEELTDEINI-----------DLKSELTVEEVALGFIKVANETMCRPIRALTESRGHDT 471 (1247)
T ss_pred cccccCCCcccccchHHHHHHHHHHHHHHhh-----------hccccccHHHHHHHHHHhhhhhhcchHHHHHhhcCCcc
Confidence 5556677665444455788999999999996 445568888864 589999999999996 58887
Q ss_pred eeecCCceeeecCCCCcccccccccc
Q psy9724 113 SFSRSGNFRIKSAPSGNRTHDLALTK 138 (140)
Q Consensus 113 vA~~~G~~~v~~~~gg~~~~~~~~~~ 138 (140)
-.+ ++++.-|.=.-|-.|..|
T Consensus 472 s~H-----~LacFGGAGgQHacaiA~ 492 (1247)
T KOG1939|consen 472 SNH-----ALACFGGAGGQHACAIAK 492 (1247)
T ss_pred cce-----eeEeecCCCcchhHHHHh
Confidence 533 334444444456555444
No 202
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=29.44 E-value=33 Score=21.77 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcC
Q psy9724 57 KEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAA 99 (140)
Q Consensus 57 ~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~AD 99 (140)
.+.+++.+++.+. .++.+|+.++|++||
T Consensus 9 ~dtLEkv~e~~~~---------------~L~~~e~~~f~~AaD 36 (57)
T PF05321_consen 9 LDTLEKVIEHNRY---------------KLTDDELEAFNSAAD 36 (57)
T ss_dssp HHHHHHHHHHHHH---------------HS-HHHHHHHHHHHH
T ss_pred HhhHHHHHHHhhC---------------cCCHHHHHHHHHHHH
Confidence 3566777776532 467889999999998
No 203
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=29.40 E-value=1.6e+02 Score=20.84 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=22.7
Q ss_pred EEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCC
Q psy9724 39 LLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT 73 (140)
Q Consensus 39 Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~ 73 (140)
+|.++-+.-. ..+|+++.+++..+..++....|.
T Consensus 83 vVviaR~~~~-~~~~~~l~~~l~~ll~~~~~~~~~ 116 (118)
T PRK00588 83 VVIRALPSSR-HVSSARLEQQLRCGLRRAVELAGA 116 (118)
T ss_pred EEEecCcccc-cCCHHHHHHHHHHHHHHhccccCC
Confidence 3344544332 356789999999999988666553
No 204
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=29.20 E-value=1e+02 Score=25.72 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=37.8
Q ss_pred EEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCce------eeecCCceeeecCCCCcccc
Q psy9724 79 IRYIYGCISQDELASFYRDAAVALVTPLRDEWSN------SFSRSGNFRIKSAPSGNRTH 132 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~ADv~vvts~rdGmnL------vA~~~G~~~v~~~~gg~~~~ 132 (140)
|..+...++.+.+..+...+|+.+... |.+.. .+.+.|.|.|...+.|...+
T Consensus 98 i~~~~~~~~~~~~~~~~~~~DlVid~~--D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~ 155 (338)
T PRK12475 98 IVPVVTDVTVEELEELVKEVDLIIDAT--DNFDTRLLINDLSQKYNIPWIYGGCVGSYGV 155 (338)
T ss_pred EEEEeccCCHHHHHHHhcCCCEEEEcC--CCHHHHHHHHHHHHHcCCCEEEEEecccEEE
Confidence 555566777778888899999999986 44433 36667999998877765444
No 205
>COG4923 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=28.62 E-value=24 Score=28.13 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCe
Q psy9724 15 GLVHRLKAFETLLEKHPEHLEKV 37 (140)
Q Consensus 15 Gi~~kl~A~~~~L~~~P~~~~kv 37 (140)
||..|++-.+-||..+|+++++|
T Consensus 123 ~Iv~KiRevD~fLi~~pdlr~~v 145 (245)
T COG4923 123 GIVSKIREVDAFLIARPDLRGRV 145 (245)
T ss_pred hhhhhhhhhhhhhhcCcchhhhh
Confidence 67889999999999999998865
No 206
>PRK14851 hypothetical protein; Provisional
Probab=28.32 E-value=1.6e+02 Score=27.22 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCce--------eeecCCceeeecCCCCccc
Q psy9724 60 MDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSN--------SFSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 60 l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnL--------vA~~~G~~~v~~~~gg~~~ 131 (140)
+.+.+.+||- ...|..+...++.+.+..++...|+++... |-+++ .|++.+.|+|.+.+.|...
T Consensus 102 ~~~~l~~inP------~~~I~~~~~~i~~~n~~~~l~~~DvVid~~--D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g 173 (679)
T PRK14851 102 MKEQALSINP------FLEITPFPAGINADNMDAFLDGVDVVLDGL--DFFQFEIRRTLFNMAREKGIPVITAGPLGYSS 173 (679)
T ss_pred HHHHHHHhCC------CCeEEEEecCCChHHHHHHHhCCCEEEECC--CCCcHHHHHHHHHHHHHCCCCEEEeecccccc
Confidence 3455667764 234667788899888889999999966333 54322 2666799999999888777
Q ss_pred ccccc
Q psy9724 132 HDLAL 136 (140)
Q Consensus 132 ~~~~~ 136 (140)
+-+.+
T Consensus 174 ~~~~~ 178 (679)
T PRK14851 174 AMLVF 178 (679)
T ss_pred eEEEE
Confidence 65543
No 207
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=27.99 E-value=3.1e+02 Score=22.87 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHhCCCCCC----CeEEEEEec--CCCC-ChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHH
Q psy9724 23 FETLLEKHPEHLE----KVTLLQIAV--PSRT-DVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFY 95 (140)
Q Consensus 23 ~~~~L~~~P~~~~----kv~Lvqi~~--psr~-~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly 95 (140)
++++++.-|++++ .+...++.. +|.. ..++ ..+++++|+..+. ++.-|+..+|.-+.+|-.+++
T Consensus 31 ~~~~l~~~p~l~~~~~~~~~~~~~~~~idSs~mt~~~-------w~~la~~I~~~~~--~~dG~VVtHGTDTmeeTA~~L 101 (335)
T PRK09461 31 LQRQLALMPEFHRPEMPDFTIHEYTPLIDSSDMTPED-------WQHIADDIKANYD--DYDGFVILHGTDTMAYTASAL 101 (335)
T ss_pred HHHHHHhCccccccCcccEEEEEccCCCCcccCCHHH-------HHHHHHHHHHHhc--cCCeEEEeeccchHHHHHHHH
Confidence 4677777787763 355566653 4432 2232 3445556655552 356677778888888887766
Q ss_pred H
Q psy9724 96 R 96 (140)
Q Consensus 96 ~ 96 (140)
.
T Consensus 102 ~ 102 (335)
T PRK09461 102 S 102 (335)
T ss_pred H
Confidence 5
No 208
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=27.62 E-value=2.7e+02 Score=24.27 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=37.4
Q ss_pred HHHHHHhCCCCCC--CeEEEEEec-CCCC-ChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHH
Q psy9724 23 FETLLEKHPEHLE--KVTLLQIAV-PSRT-DVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 96 (140)
Q Consensus 23 ~~~~L~~~P~~~~--kv~Lvqi~~-psr~-~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~ 96 (140)
.+++|+.-|++.+ .+...|+.. +|.. ..++. .+++++|+..+.+ ++.-++..+|.-+.++-.+++.
T Consensus 104 ~~~ll~~vp~l~~~a~i~~~~~~~idS~~mtp~~W-------~~La~~I~~~~~~-~~dGvVVtHGTDTM~yTA~aLs 173 (419)
T PRK04183 104 AEDLLRAVPELLDIANIRGRVLFNILSENMTPEYW-------VEIAEAVYEEIKN-GADGVVVAHGTDTMHYTAAALS 173 (419)
T ss_pred HHHHHHhChhhcccceEEEEEeccCCchhCCHHHH-------HHHHHHHHHHhhc-cCCeEEEecCCchHHHHHHHHH
Confidence 4677787888765 355556653 2221 22322 4455555554433 3555666677777777766554
No 209
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=27.30 E-value=2.3e+02 Score=23.11 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=30.6
Q ss_pred EEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee--eecCCceeeecCCCC
Q psy9724 81 YIYGCISQDELASFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSAPSG 128 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~~gg 128 (140)
.+.+.+++++ ++..||+++ .+-|+|.+ |...|.|.|.-..++
T Consensus 291 ~~~~~~p~~~---ll~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~ 334 (401)
T cd03784 291 RVVDFVPHDW---LLPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFG 334 (401)
T ss_pred EEeCCCCHHH---Hhhhhheee---ecCCchhHHHHHHcCCCEEeeCCCC
Confidence 4456677765 577899999 67899887 444499998876554
No 210
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=27.27 E-value=3.7e+02 Score=25.68 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred ecCccccCCHHH-HHHHHHHH--HHhCCCCC-CCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE
Q psy9724 7 VDRLDYTKGLVH-RLKAFETL--LEKHPEHL-EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82 (140)
Q Consensus 7 VdRld~~KGi~~-kl~A~~~~--L~~~P~~~-~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~ 82 (140)
+=|+..=|=-.+ .|.-++++ +.++|+.. ..+++|--|-+.-.+ ..-+.+.+.+..+++.||+.=.-.+.--|+|+
T Consensus 535 ~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y-~~aK~iIklI~~va~~in~Dp~v~~~lkVVFl 613 (798)
T PRK14985 535 IKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGY-YLAKNIIFAINKVAEVINNDPLVGDKLKVVFL 613 (798)
T ss_pred HhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCc-HHHHHHHHHHHHHHHHhcCChhhCCceeEEEe
Confidence 334444443333 33333332 24467643 345565555444333 33357778888899999863221122247777
Q ss_pred eC-CCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeecCCCC
Q psy9724 83 YG-CISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSAPSG 128 (140)
Q Consensus 83 ~~-~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~~gg 128 (140)
++ .++.+| -++.+|||-.-+|.+ +.=|| ||-=|+.+.-|
T Consensus 614 enY~VslAe--~lipaaDvseqis~a---g~EAS--GTsnMK~amNG 653 (798)
T PRK14985 614 PDYCVSAAE--LLIPAADISEQISTA---GKEAS--GTGNMKLALNG 653 (798)
T ss_pred CCCChHHHH--HHhhhhhhhhhCCCC---Ccccc--CcchhHHHhcC
Confidence 64 466665 589999999999985 34455 65555444433
No 211
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=27.19 E-value=23 Score=22.46 Aligned_cols=15 Identities=7% Similarity=0.392 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCCCC
Q psy9724 21 KAFETLLEKHPEHLE 35 (140)
Q Consensus 21 ~A~~~~L~~~P~~~~ 35 (140)
+=+++||+.||++..
T Consensus 41 RrIdRFF~~NP~lA~ 55 (57)
T PF05484_consen 41 RRIDRFFRWNPDLAD 55 (57)
T ss_dssp HHHHHHHHH-GGGGG
T ss_pred HHHHHHHHhChHhhh
Confidence 457899999999853
No 212
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.17 E-value=1.1e+02 Score=25.61 Aligned_cols=96 Identities=15% Similarity=0.051 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHH
Q psy9724 15 GLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASF 94 (140)
Q Consensus 15 Gi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~al 94 (140)
.+...+.|+..+.+. .+++.+--+-.|.-.+.+ +-.+++.+++..++.+.--..+.|..--....+.+++.++
T Consensus 229 ~le~il~ai~~~~~~----~rri~ieyvLI~GvNDse---eda~~La~llk~l~~~vnlI~~N~~~~~~~~p~~~~i~~f 301 (336)
T PRK14470 229 PLDELVEAIREHAAL----RGRVTLEYVMISGVNVGE---EDAAALGRLLAGIPVRLNPIAVNDATGRYRPPDEDEWNAF 301 (336)
T ss_pred CHHHHHHHHHHHHHh----CCCeEEEEEEEecccCCH---HHHHHHHHHHhcCCCeEEEeccCCCCCCccCCCHHHHHHH
Confidence 466667777777653 356665555555333322 2234555566544333221122221112345678888787
Q ss_pred HHHc---CEEEECCCCCCCcee---eecCCc
Q psy9724 95 YRDA---AVALVTPLRDEWSNS---FSRSGN 119 (140)
Q Consensus 95 y~~A---Dv~vvts~rdGmnLv---A~~~G~ 119 (140)
...- +-.+.+.+|.-++-= || |.
T Consensus 302 ~~~l~~~~~g~~~~~R~~~G~di~aaC--Gq 330 (336)
T PRK14470 302 RDALARELPGTPVVRRYSGGQDEHAAC--GM 330 (336)
T ss_pred HHHHHHccCCeEEEEECCCCCChHhcc--Cc
Confidence 7665 556666677666552 88 64
No 213
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=27.12 E-value=2.5e+02 Score=25.53 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=26.3
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCC
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPL 106 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~ 106 (140)
.+.-++|.++.+++..+|.-++|++.||-
T Consensus 88 ~i~~ltGev~p~~R~~~w~~~kVfvaTPQ 116 (542)
T COG1111 88 EIAALTGEVRPEEREELWAKKKVFVATPQ 116 (542)
T ss_pred heeeecCCCChHHHHHHHhhCCEEEeccH
Confidence 46667999999999999999999999994
No 214
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=27.05 E-value=1.4e+02 Score=18.65 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHH
Q psy9724 55 DLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRD 97 (140)
Q Consensus 55 ~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ 97 (140)
...+.+..++..+|+.| ..+++.+|+.+..+-
T Consensus 33 ~~~~~v~~~~~~~N~~~-----------~~PL~~~Ev~~i~kS 64 (71)
T PF08708_consen 33 QFRQEVLSLAQAINSNF-----------SPPLPESEVKAIAKS 64 (71)
T ss_pred HHHHHHHHHHHHHHHHc-----------CCCCCHHHHHHHHHH
Confidence 45667899999999865 456788888776553
No 215
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=26.79 E-value=2.6e+02 Score=24.20 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCCC--CeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHH
Q psy9724 23 FETLLEKHPEHLE--KVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 96 (140)
Q Consensus 23 ~~~~L~~~P~~~~--kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~ 96 (140)
.+++++.-|++.+ ++...|+..-..++.. -+...+++++|+..+.. ++.-|+..+|.-+.++-.+++.
T Consensus 91 ~~~ll~~vp~l~~~a~i~~~~~~nidS~~mt-----p~~w~~La~~I~~~~~~-~~dGvVVtHGTDTM~yTA~aLs 160 (404)
T TIGR02153 91 AEELARAVPELLEIANIKARAVFNILSENMK-----PEYWIKIAEAVAKALKE-GADGVVVAHGTDTMAYTAAALS 160 (404)
T ss_pred HHHHHHhChhhcccceEEEEecCCCCchhCC-----HHHHHHHHHHHHHHhhc-CCCcEEEecCChhHHHHHHHHH
Confidence 4677777888765 4556666532222211 12224455555555532 3445666778888887776554
No 216
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=26.66 E-value=3.3e+02 Score=21.66 Aligned_cols=40 Identities=10% Similarity=-0.066 Sum_probs=28.9
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeeecC
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIKSA 125 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~~~ 125 (140)
.+..+..|+.++.+.||+++-+- --+|.+- |. |+|+|+=.
T Consensus 240 ~g~~sL~el~ali~~a~l~I~~D-Sgp~HlAaa~--g~P~i~lf 280 (319)
T TIGR02193 240 LPKMSLAEVAALLAGADAVVGVD-TGLTHLAAAL--DKPTVTLY 280 (319)
T ss_pred cCCCCHHHHHHHHHcCCEEEeCC-ChHHHHHHHc--CCCEEEEE
Confidence 46779999999999999887653 2344443 55 89988643
No 217
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=26.61 E-value=2.8e+02 Score=23.94 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC--CCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEe---------
Q psy9724 15 GLVHRLKAFETLLEKHPEHLEKVTLLQIAVPS--RTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIY--------- 83 (140)
Q Consensus 15 Gi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~ps--r~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~--------- 83 (140)
|=...+++|+++|.+|--- .-|+-... ..+...|...+..++.|.+. +.-||+=.+
T Consensus 81 GQ~~Lm~~y~~~f~~~g~~-----v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~--------gvVPIINENDtva~~Eik 147 (369)
T COG0263 81 GQVRLMQLYEELFARYGIK-----VGQILLTRDDFSDRRRYLNARNTLSALLEL--------GVVPIINENDTVATEEIK 147 (369)
T ss_pred CHHHHHHHHHHHHHhcCCe-----eeEEEeehhhhhhHHHHHHHHHHHHHHHHC--------CceeeecCCCceeeeeee
Confidence 3346789999999988543 34443321 12345677888888888864 344554332
Q ss_pred --CCCCHHHHHHHHHHcCEEEECCCCCCC
Q psy9724 84 --GCISQDELASFYRDAAVALVTPLRDEW 110 (140)
Q Consensus 84 --~~~~~~el~aly~~ADv~vvts~rdGm 110 (140)
+.-+..-+.|.+-.||.++.=|=-||+
T Consensus 148 fGDND~LsA~VA~lv~ADlLvlLsDiDGL 176 (369)
T COG0263 148 FGDNDTLSALVAILVGADLLVLLSDIDGL 176 (369)
T ss_pred ecCCchHHHHHHHHhCCCEEEEEEccCcc
Confidence 234455567788899999999999988
No 218
>PRK09982 universal stress protein UspD; Provisional
Probab=26.57 E-value=2.3e+02 Score=19.80 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=48.3
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC--------ChhH-HHHHHHHHHHHHHHHhcCC
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRT--------DVKE-YQDLKEEMDQLVGRINGRF 71 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~--------~~~~-y~~~~~~l~~lv~~IN~~~ 71 (140)
|+|++.+|-=+.+ .. |++.-.+--.....++.++-+-.+... ..++ .+.+.++.++..+++-.++
T Consensus 4 k~ILvavD~S~~s---~~---al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK09982 4 KHIGVAISGNEED---AL---LVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNI 77 (142)
T ss_pred eEEEEEecCCcch---HH---HHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899998754433 33 333322221223346777766433211 0011 1223333333333333333
Q ss_pred CCCCcccEEEEeCCCCHHHHHHH--HHHcCEEEECCCCCCCc
Q psy9724 72 TTPNWSPIRYIYGCISQDELASF--YRDAAVALVTPLRDEWS 111 (140)
Q Consensus 72 g~~~~~pv~~~~~~~~~~el~al--y~~ADv~vvts~rdGmn 111 (140)
+..... .....| -+.+++..+ =..||..++-+.+.|+.
T Consensus 78 ~~~~~~-~~v~~G-~p~~~I~~~A~~~~aDLIVmG~~~~~~~ 117 (142)
T PRK09982 78 QWPKTK-LRIERG-EMPETLLEIMQKEQCDLLVCGHHHSFIN 117 (142)
T ss_pred CCCcce-EEEEec-CHHHHHHHHHHHcCCCEEEEeCChhHHH
Confidence 322211 222334 466777765 45689988887665553
No 219
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=26.50 E-value=2.3e+02 Score=23.67 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=54.3
Q ss_pred cccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecC-CCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHH
Q psy9724 11 DYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVP-SRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQD 89 (140)
Q Consensus 11 d~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~p-sr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~ 89 (140)
+.+||-.+|++=+..++. .|+ |+.+-.| |..+.-.-+-+++.+.++-++ | ..|.|....+.+.
T Consensus 130 ~LSKGnqQKIQfisaviH-ePe------LlILDEPFSGLDPVN~elLk~~I~~lk~~-----G----atIifSsH~Me~v 193 (300)
T COG4152 130 ELSKGNQQKIQFISAVIH-EPE------LLILDEPFSGLDPVNVELLKDAIFELKEE-----G----ATIIFSSHRMEHV 193 (300)
T ss_pred HhhhhhhHHHHHHHHHhc-CCC------EEEecCCccCCChhhHHHHHHHHHHHHhc-----C----CEEEEecchHHHH
Confidence 358999999999998885 677 5777666 444533333444444444432 2 3477777667666
Q ss_pred HHHHHHHHcCEEEECCCCCCCceeeecCCceeeecCCCCccc
Q psy9724 90 ELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 90 el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~~gg~~~ 131 (140)
|... |-+.+... |.+|+...+-++|+
T Consensus 194 EeLC--------------D~llmL~k--G~~V~~G~v~~ir~ 219 (300)
T COG4152 194 EELC--------------DRLLMLKK--GQTVLYGTVEDIRR 219 (300)
T ss_pred HHHh--------------hhhheecC--CceEEeccHHHHHH
Confidence 6432 33334444 77777766655554
No 220
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=26.26 E-value=5e+02 Score=24.78 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=64.2
Q ss_pred EecCccccCCHHH-HHHHHHHH--HHhCCCCC-CCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEE
Q psy9724 6 SVDRLDYTKGLVH-RLKAFETL--LEKHPEHL-EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRY 81 (140)
Q Consensus 6 ~VdRld~~KGi~~-kl~A~~~~--L~~~P~~~-~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~ 81 (140)
.+=|+..=|=-.+ .|.-++++ +.++|+.. ..+++|--|-+.-.+ ..-+.+.+.+..+++.||+.=.-.+.--|+|
T Consensus 532 q~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y-~~aK~iIklI~~va~~iN~Dp~v~~~lkVVF 610 (794)
T TIGR02093 532 QVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGY-HMAKLIIKLINSVAEVVNNDPAVGDKLKVVF 610 (794)
T ss_pred hheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCc-HHHHHHHHHHHHHHHHhccChhhCCceeEEE
Confidence 3445554444333 34443333 33456542 245565555444333 3335788888999999987422122224777
Q ss_pred EeC-CCCHHHHHHHHHHcCEEEECCCCCCCceeeecCCceeeecCC
Q psy9724 82 IYG-CISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRIKSAP 126 (140)
Q Consensus 82 ~~~-~~~~~el~aly~~ADv~vvts~rdGmnLvA~~~G~~~v~~~~ 126 (140)
+++ .++.+| .++.+|||-.-+|.+ +.=|| ||-=|+-+.
T Consensus 611 lenY~VslAe--~iipaaDvseqista---g~EAS--GTsnMK~al 649 (794)
T TIGR02093 611 VPNYNVSLAE--LIIPAADLSEQISTA---GKEAS--GTGNMKFML 649 (794)
T ss_pred eCCCChHHHH--HhhhhhhhhhhCCCC---Ccccc--CcchhHHHh
Confidence 765 466665 589999999999985 23355 554444433
No 221
>PRK01810 DNA polymerase IV; Validated
Probab=26.03 E-value=3.6e+02 Score=22.70 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=38.3
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCC---------hhHH--HHHHHHHHHHHHHHhcCCCCC
Q psy9724 12 YTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTD---------VKEY--QDLKEEMDQLVGRINGRFTTP 74 (140)
Q Consensus 12 ~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~---------~~~y--~~~~~~l~~lv~~IN~~~g~~ 74 (140)
++--....+.+...+|++.+. ...+.++.+....-.. .-+. ..-.+.+.+++++||.+||..
T Consensus 310 pt~~~~~l~~~~~~ll~~~~~-~~~vr~lgv~~~~l~~~~~~~~q~~Lf~~~~~~~~~~l~~~id~l~~r~G~~ 382 (407)
T PRK01810 310 PIWEKRDIFQAASRLFKQHWN-GDPVRLLGVTATDLEWKTEAVKQLDLFSFEEDAKEEPLLAVIDQINDKYGMP 382 (407)
T ss_pred CCCCHHHHHHHHHHHHHhccC-CCCEEEEEEEEecCccccccccccccccchhhhhHHHHHHHHHHHHHhcCcc
Confidence 444556677788888888753 3467777665421111 0010 112346899999999999974
No 222
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.00 E-value=62 Score=27.20 Aligned_cols=56 Identities=18% Similarity=0.028 Sum_probs=40.0
Q ss_pred ccEEEEeCCCCHHHHHHHHHHcCEEEECCC----CCCCceeeecCCceeeecCCCCcccc
Q psy9724 77 SPIRYIYGCISQDELASFYRDAAVALVTPL----RDEWSNSFSRSGNFRIKSAPSGNRTH 132 (140)
Q Consensus 77 ~pv~~~~~~~~~~el~aly~~ADv~vvts~----rdGmnLvA~~~G~~~v~~~~gg~~~~ 132 (140)
..|..+...++.+....+.+.+|+.+.+.- |.=+|-.+.+.+.|.|...+-|...+
T Consensus 98 v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~ 157 (355)
T PRK05597 98 VKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQ 157 (355)
T ss_pred cEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEE
Confidence 346666778888888889999999998852 11134345566999998888777654
No 223
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=25.73 E-value=2.2e+02 Score=20.42 Aligned_cols=35 Identities=9% Similarity=0.092 Sum_probs=21.5
Q ss_pred CCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhc
Q psy9724 35 EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRING 69 (140)
Q Consensus 35 ~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~ 69 (140)
.+++++++|+-.........++.+.++++++.+-+
T Consensus 60 ~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~ 94 (183)
T cd04501 60 PAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEA 94 (183)
T ss_pred CCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHH
Confidence 35688888763322212234667778888888744
No 224
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=25.53 E-value=3.3e+02 Score=22.58 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCCCCe--EEEEEec-CCCC-ChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHH
Q psy9724 23 FETLLEKHPEHLEKV--TLLQIAV-PSRT-DVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 96 (140)
Q Consensus 23 ~~~~L~~~P~~~~kv--~Lvqi~~-psr~-~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~ 96 (140)
.+++|+..|++.+.. ...++.. +|.. ..++ ..+++++|+..+.+ +.-++..++.-+.+|..+++.
T Consensus 31 ~~~ll~~~p~l~~~~~~~~~~~~~idSs~~t~~~-------w~~l~~~I~~~~~~--~dGiVVtHGTDTmeeTA~~L~ 99 (323)
T cd00411 31 ADALLAAVPEIKNIANIKGEQLPNIDSSDMTDED-------WLKIAKDINELYDS--YDGFVITHGTDTMEETAYFLS 99 (323)
T ss_pred HHHHHHhCcccccccEEEEEEecCCCCccCCHHH-------HHHHHHHHHHHHHh--cCcEEEEcCcccHHHHHHHHH
Confidence 467888888887632 3333332 3322 2232 24455555544432 455777788888888777654
No 225
>PRK02794 DNA polymerase IV; Provisional
Probab=25.45 E-value=3e+02 Score=23.39 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC---C--h----hHHHHHHHHHHHHHHHHhcCCCCC
Q psy9724 12 YTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRT---D--V----KEYQDLKEEMDQLVGRINGRFTTP 74 (140)
Q Consensus 12 ~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~---~--~----~~y~~~~~~l~~lv~~IN~~~g~~ 74 (140)
++.-....+.+...+|++.+. ...+.++.+....-. . . ++-.+-...+.+++++||.+||..
T Consensus 338 pt~~~~~l~~~~~~ll~~~~~-~~~vr~igv~~~~l~~~~~~~q~~LF~~~~~~~~~l~~~id~l~~r~G~~ 408 (419)
T PRK02794 338 PTQLADRIFRTARELLEKETD-GTAFRLIGIGVSDLSPADEADPPDLLDPQATRRAAAERAIDALRAKFGAA 408 (419)
T ss_pred CcCCHHHHHHHHHHHHHhccc-CCCEEEEEEEEecCCCccccccccccCcchhhHHHHHHHHHHHHHhhCcc
Confidence 444556677788888888743 346777766542211 0 1 110122457899999999999974
No 226
>PTZ00489 glutamate 5-kinase; Provisional
Probab=25.30 E-value=3.7e+02 Score=21.73 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCh---hHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCC--------
Q psy9724 18 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDV---KEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCI-------- 86 (140)
Q Consensus 18 ~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~---~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~-------- 86 (140)
..+..|+..|.+|--. -.|+- .++.+. +.|...++.++++.+. +.-||.+-++.+
T Consensus 82 ~L~~~y~~~f~~~~~~-----~aqiL-lt~~d~~~~~~~~n~~~~l~~lL~~--------g~VPIinend~~~~~e~~~g 147 (264)
T PTZ00489 82 LLMHMYYTELQKHGIL-----CAQML-LAAYDLDSRKRTINAHNTIEVLISH--------KVIPIINENDATALHELVFG 147 (264)
T ss_pred HHHHHHHHHHHhCCCe-----EEEee-eeccccccchhhHHHHHHHHHHHHC--------CCEEEECCCCCcccceeEeC
Confidence 3444477888776432 24444 222222 3344556666666653 456776543322
Q ss_pred CHHHHHHHHHH---cCEEEE
Q psy9724 87 SQDELASFYRD---AAVALV 103 (140)
Q Consensus 87 ~~~el~aly~~---ADv~vv 103 (140)
+-+++.++.+. ||.+++
T Consensus 148 dnD~lAa~lA~~l~Ad~Lii 167 (264)
T PTZ00489 148 DNDRLSALVAHHFKADLLVI 167 (264)
T ss_pred ChHHHHHHHHHHhCCCEEEE
Confidence 56666665553 786665
No 227
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=25.01 E-value=3.9e+02 Score=21.95 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=25.1
Q ss_pred EEEEEecCccccC--CHHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Q psy9724 2 SLVLSVDRLDYTK--GLVHRLKAFETLLEKHPEHLEKVTLLQIAVP 45 (140)
Q Consensus 2 ~iil~VdRld~~K--Gi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~p 45 (140)
.+++-+|-+|.+- .-...+.++-++++..+.. ++.+|-++.+
T Consensus 139 ~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~--~v~vI~i~~~ 182 (394)
T PRK00411 139 VLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGA--RIGVIGISSD 182 (394)
T ss_pred EEEEEECCHhHhhccCCchHHHHHHHhhhccCCC--eEEEEEEECC
Confidence 4789999999864 1123445554555444432 5667766654
No 228
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=24.88 E-value=2e+02 Score=26.15 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCC-------CCc-----ccEEEEeCC
Q psy9724 18 HRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT-------PNW-----SPIRYIYGC 85 (140)
Q Consensus 18 ~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~-------~~~-----~pv~~~~~~ 85 (140)
.+++.+..-|++|-.. ..+-+.|.-++ .+|..+.+++.++-.+. -.+-+ .+. .|..-+...
T Consensus 32 ~~i~~L~~~l~~~~~~-----YY~~~~p~IsD-~eYD~L~~eL~~LE~~~-p~~~~~~spt~~vg~kv~H~~PMlSL~k~ 104 (562)
T PRK08097 32 EEIAALQQQLAQWDDA-----YWRQGKSEVDD-EVYDQLRARLTQWQRCF-GGPEPRDVPLPPLNGKVLHPVAHTGVKKL 104 (562)
T ss_pred HHHHHHHHHHHHHHHH-----HHhCCCCCCCh-HHHHHHHHHHHHHHHhC-cCcCCCCCCCCCCCCceECCCCccccccc
Confidence 3455556656655442 23445565544 66888888887774432 22210 111 122222345
Q ss_pred CCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeee
Q psy9724 86 ISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIK 123 (140)
Q Consensus 86 ~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~ 123 (140)
.+.+|+..|+..-+-+++.+--||+.+. -.++|..+=+
T Consensus 105 ~s~eel~~w~~~~~~~~vepKiDGlsisL~Ye~G~Lv~a 143 (562)
T PRK08097 105 ADKQALARWMAGRSDLWVQPKVDGVAVTLVYRDGKLVQA 143 (562)
T ss_pred CCHHHHHHHHhhccceEEEEecccEEEEEEEECCEEEEE
Confidence 6999999999887779999999999776 4566766533
No 229
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=24.71 E-value=59 Score=18.82 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=17.6
Q ss_pred eCCCCHHHHHHHHHHcCEEEECC
Q psy9724 83 YGCISQDELASFYRDAAVALVTP 105 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts 105 (140)
.|+++.+|+..+++.-.|---|-
T Consensus 11 ~GP~s~~el~~l~~~g~i~~~tl 33 (45)
T PF14237_consen 11 QGPFSLEELRQLISSGEIDPDTL 33 (45)
T ss_pred ECCcCHHHHHHHHHcCCCCCCCe
Confidence 57889999999998877654443
No 230
>PRK08328 hypothetical protein; Provisional
Probab=24.66 E-value=85 Score=24.60 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=39.2
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCCC----CCCceeeecCCceeeecCCCCccccc
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPLR----DEWSNSFSRSGNFRIKSAPSGNRTHD 133 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~r----dGmnLvA~~~G~~~v~~~~gg~~~~~ 133 (140)
.|..+.+.++.+....+++.+|+.+...-. -=+|-.|...|.|.|.+.+.|...+-
T Consensus 99 ~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 99 KIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred EEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 455556677777777899999999887432 11333355679999999888876553
No 231
>PRK08223 hypothetical protein; Validated
Probab=24.58 E-value=84 Score=26.02 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCce--------eeecCCceeeecCCCCccc
Q psy9724 60 MDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSN--------SFSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 60 l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnL--------vA~~~G~~~v~~~~gg~~~ 131 (140)
..+.+.+||. +..|..+...++.+....++..+|+.+... |-+++ .|...|.|.|.+++.|...
T Consensus 86 a~~~l~~iNP------~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~--D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~g 157 (287)
T PRK08223 86 LAEMVRDINP------ELEIRAFPEGIGKENADAFLDGVDVYVDGL--DFFEFDARRLVFAACQQRGIPALTAAPLGMGT 157 (287)
T ss_pred HHHHHHHHCC------CCEEEEEecccCccCHHHHHhCCCEEEECC--CCCcHHHHHHHHHHHHHcCCCEEEEeccCCeE
Confidence 3455567764 234666677788877788899999987333 44322 2556699999987777655
Q ss_pred c
Q psy9724 132 H 132 (140)
Q Consensus 132 ~ 132 (140)
+
T Consensus 158 q 158 (287)
T PRK08223 158 A 158 (287)
T ss_pred E
Confidence 4
No 232
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=24.37 E-value=2.2e+02 Score=23.10 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy9724 15 GLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSP 78 (140)
Q Consensus 15 Gi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~p 78 (140)
-+...|+.+..||..||+ .++++.+-..... .. ..++.+.|++.||+.-+.|
T Consensus 89 ~l~d~L~eI~~fL~~nP~---EvViL~~e~~~~~--~~-------~~~l~~~l~~~fGd~ly~P 140 (267)
T cd08590 89 LFEDGLNEIADWLNANPD---EVVILYLEDHGDG--GK-------DDELNALLNDAFGDLLYTP 140 (267)
T ss_pred hHHHHHHHHHHHHHhCCC---CcEEEEEecCCCc--cc-------HHHHHHHHHHHhCCeEEcC
Confidence 367779999999999995 3566655433211 11 2345555666677654443
No 233
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=24.26 E-value=2.1e+02 Score=21.21 Aligned_cols=77 Identities=13% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHhCCCCCCCeEEEEEecCCCCChh--HHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCE
Q psy9724 23 FETLLEKHPEHLEKVTLLQIAVPSRTDVK--EYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAV 100 (140)
Q Consensus 23 ~~~~L~~~P~~~~kv~Lvqi~~psr~~~~--~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv 100 (140)
+...+++. ++||+.|. |+-+... +-....+++++-.+++++ .|+.-|.|++-+.+-. ..-=-.+++
T Consensus 40 l~~~lErq--fKGRv~l~----P~~~Y~~~~~~~~~~~~L~~w~~~l~~----~GFkhV~~lT~D~~Wk--~~~~~~~~l 107 (142)
T PF10673_consen 40 LADELERQ--FKGRVLLF----PAFTYLKEEDEEELVERLNDWCEELKE----SGFKHVFYLTSDSEWK--QEEELEGSL 107 (142)
T ss_pred HHHHHHHh--cCceEEec----CCeeeecccchhHHHHHHHHHHHHHHh----cCCcEEEEEecCcccc--cccCCCCcE
Confidence 33445543 77787773 3322211 111333445555555543 4677787777442211 001116778
Q ss_pred EEECCC-CCCCc
Q psy9724 101 ALVTPL-RDEWS 111 (140)
Q Consensus 101 ~vvts~-rdGmn 111 (140)
+++|++ =|.|+
T Consensus 108 iwlPaipLe~md 119 (142)
T PF10673_consen 108 IWLPAIPLEHMD 119 (142)
T ss_pred EEEeCccccccC
Confidence 888875 34443
No 234
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=24.23 E-value=3.9e+02 Score=21.66 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=41.1
Q ss_pred CEEEEEecCccccCCHHHHHHHHHHHHHh--CCCCC-CCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy9724 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEK--HPEHL-EKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWS 77 (140)
Q Consensus 1 k~iil~VdRld~~KGi~~kl~A~~~~L~~--~P~~~-~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~ 77 (140)
+++++-+|-+|.+-+-.. ..+..+++. .++.. .++.+|.++.. .+ +. ..+-.++-++|+
T Consensus 129 ~~~vlvIDE~d~L~~~~~--~~L~~l~~~~~~~~~~~~~v~lI~i~n~--~~------~~---~~l~~~~~s~~~----- 190 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDD--DLLYQLSRARSNGDLDNAKVGVIGISND--LK------FR---ENLDPRVKSSLC----- 190 (365)
T ss_pred CeEEEEECchhhhccCCc--HHHHhHhccccccCCCCCeEEEEEEECC--cc------hH---hhcCHHHhccCC-----
Confidence 357899999999942221 123334433 33443 35666666632 11 11 123333334443
Q ss_pred cEEEEeCCCCHHHHHHHHHH
Q psy9724 78 PIRYIYGCISQDELASFYRD 97 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ 97 (140)
+..+...+.+.+|+..+++.
T Consensus 191 ~~~i~f~p~~~~e~~~il~~ 210 (365)
T TIGR02928 191 EEEIIFPPYDAEELRDILEN 210 (365)
T ss_pred cceeeeCCCCHHHHHHHHHH
Confidence 22234567788888887753
No 235
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.17 E-value=3.1e+02 Score=23.83 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHH
Q psy9724 14 KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELAS 93 (140)
Q Consensus 14 KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~a 93 (140)
+.+...+.+|++..+..|.- +|.++=. +- |..-....+.+++.|+ +.|..++.+....-+.+|+..
T Consensus 228 ~~~~~i~~~Y~~W~~~~~~~--~V~l~Y~-sm-------yg~T~~ma~aiaegl~----~~gv~v~~~~~~~~~~~eI~~ 293 (388)
T COG0426 228 GNPKEIVEAYRDWAEGQPKG--KVDLIYD-SM-------YGNTEKMAQAIAEGLM----KEGVDVEVINLEDADPSEIVE 293 (388)
T ss_pred CCHHHHHHHHHHHHccCCcc--eEEEEEe-cc-------cCCHHHHHHHHHHHhh----hcCCceEEEEcccCCHHHHHH
Confidence 45778889999998888765 4444432 11 2122233344555553 356677666666668999999
Q ss_pred HHHHcCEEEECCC
Q psy9724 94 FYRDAAVALVTPL 106 (140)
Q Consensus 94 ly~~ADv~vvts~ 106 (140)
..-.|+.+++-|-
T Consensus 294 ~i~~a~~~vvGsP 306 (388)
T COG0426 294 EILDAKGLVVGSP 306 (388)
T ss_pred HHhhcceEEEecC
Confidence 8888888877443
No 236
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=23.89 E-value=76 Score=25.61 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCEEEECCCCCCCcee--eecCCceeeecCCCC
Q psy9724 89 DELASFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSAPSG 128 (140)
Q Consensus 89 ~el~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~~gg 128 (140)
+++.++|..||+++..+ |.+.+ |+.-|+|++.-...|
T Consensus 239 ~~~~~~l~~ad~vI~~~---G~~t~~Ea~~~g~P~l~ip~~~ 277 (321)
T TIGR00661 239 DNFKELIKNAELVITHG---GFSLISEALSLGKPLIVIPDLG 277 (321)
T ss_pred HHHHHHHHhCCEEEECC---ChHHHHHHHHcCCCEEEEcCCC
Confidence 67999999999999977 77766 333499999877654
No 237
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=23.88 E-value=3.2e+02 Score=20.62 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHH--HHcCEEEECCCCCCCcee--eecCCceeee
Q psy9724 53 YQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFY--RDAAVALVTPLRDEWSNS--FSRSGNFRIK 123 (140)
Q Consensus 53 y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly--~~ADv~vvts~rdGmnLv--A~~~G~~~v~ 123 (140)
|..+.+.+++.+.+ .+|....+..+.-..+...... ..+|.+++.+....-..+ +.+.|.|+|.
T Consensus 25 ~~~~~~gi~~~~~~-------~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~ 92 (275)
T cd06295 25 FLSLLGGIADALAE-------RGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQDPLPERLAETGLPFVV 92 (275)
T ss_pred HHHHHHHHHHHHHH-------cCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEE
Confidence 45566666655554 3467655544332233333222 357877776543222222 3345777663
No 238
>cd08587 PI-PLCXDc_like Catalytic domain of phosphatidylinositol-specific phospholipase C X domain containing and similar proteins. This family corresponds to the catalytic domain present in phosphatidylinositol-specific phospholipase C X domain containing proteins (PI-PLCXD) which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs mainly found in eukaryota. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs and their bacterial homologs contain a single TIM-barrel type catalytic domain, X domain, which is more closely related to that of bacterial PI-PLCs. Although the biological function of eukaryotic PI-PLCXDs still remains unclear, it may be
Probab=23.67 E-value=3.7e+02 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCeEEEEEecC
Q psy9724 14 KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVP 45 (140)
Q Consensus 14 KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~p 45 (140)
--+...|.-+.+||++|| +.++++.+--.
T Consensus 92 ~~~~~~l~~i~~fl~~~p---~Evvil~~~~~ 120 (288)
T cd08587 92 EPVDEVLEDVNDFLDEHP---KEVVILDFNHF 120 (288)
T ss_pred cCHHHHHHHHHHHHHhCC---CcEEEEEEEcc
Confidence 456788899999999998 47788877643
No 239
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=23.61 E-value=2.3e+02 Score=25.13 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.6
Q ss_pred ecCccccCCHHHHHHHHHHHHHhCCCC
Q psy9724 7 VDRLDYTKGLVHRLKAFETLLEKHPEH 33 (140)
Q Consensus 7 VdRld~~KGi~~kl~A~~~~L~~~P~~ 33 (140)
-|.+|+-+.+....+||..|.++-|-+
T Consensus 185 ~DH~D~y~~~~~i~~~F~~f~~~vp~~ 211 (459)
T COG0773 185 FDHLDYYGDLEAIKQAFHHFVRNVPFY 211 (459)
T ss_pred cchhhhhCCHHHHHHHHHHHHHhCCcc
Confidence 378999999999999999999999976
No 240
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=23.40 E-value=1.6e+02 Score=23.16 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC---Cccc--EEEE-eCCCCH-HHHHHHHH------HcCEEEECCCCCCCc
Q psy9724 53 YQDLKEEMDQLVGRINGRFTTP---NWSP--IRYI-YGCISQ-DELASFYR------DAAVALVTPLRDEWS 111 (140)
Q Consensus 53 y~~~~~~l~~lv~~IN~~~g~~---~~~p--v~~~-~~~~~~-~el~aly~------~ADv~vvts~rdGmn 111 (140)
.+++.+.+++++.+||..|... +-.| +..+ .|.+.. .+|...+. .-|.+-++|+++|..
T Consensus 30 ~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~ 101 (211)
T PTZ00271 30 QEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVE 101 (211)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCc
Confidence 4589999999999999998531 1123 2333 455444 44444443 346677788888865
No 241
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=23.37 E-value=1.1e+02 Score=26.85 Aligned_cols=88 Identities=18% Similarity=0.288 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHH-hCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHH-----
Q psy9724 16 LVHRLKAFETLLE-KHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQD----- 89 (140)
Q Consensus 16 i~~kl~A~~~~L~-~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~----- 89 (140)
+-..|++|=+.|. +-|+|.+-+.|+.|-.++ . .+...+..+=.+-|.-|++..|..+..-.+..+..
T Consensus 88 ~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~------~varyLgs~D~~Y~~lF~d~~Wrdlf~r~~~~~~~~~~~d 160 (414)
T PF10254_consen 88 LSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-H------PVARYLGSIDSRYSSLFQDLAWRDLFERLEAPSAAQDTLD 160 (414)
T ss_pred HHHHHHHHHHHhccCCcccccceeEEEecCCC-C------HHHHHHhccchHHHHhcccHHHHHHHhcccccchhhhHHH
Confidence 3456677777666 579999999888876654 2 23344444556667777887888765443332211
Q ss_pred ---HHHHHHHHcCEEEECCCCCCC
Q psy9724 90 ---ELASFYRDAAVALVTPLRDEW 110 (140)
Q Consensus 90 ---el~aly~~ADv~vvts~rdGm 110 (140)
.+..|..-|.++.-=|+.|-|
T Consensus 161 i~~RI~qYi~ga~~~~qLPIaEAM 184 (414)
T PF10254_consen 161 IVSRISQYISGANCVHQLPIAEAM 184 (414)
T ss_pred HHHHHHHHHhcCCCccCCchhhhh
Confidence 344566666666555655555
No 242
>KOG1205|consensus
Probab=23.34 E-value=1.7e+02 Score=24.18 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHH--------HHHHHcCEEEECCC
Q psy9724 57 KEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELA--------SFYRDAAVALVTPL 106 (140)
Q Consensus 57 ~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~--------aly~~ADv~vvts~ 106 (140)
.+++++.++++-+..... .++++..+++.++=. ..+...||++.+.=
T Consensus 46 ~rrl~~v~~~l~~~~~~~---~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG 100 (282)
T KOG1205|consen 46 ARRLERVAEELRKLGSLE---KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAG 100 (282)
T ss_pred hhhHHHHHHHHHHhCCcC---ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCc
Confidence 444555555554433332 456666666554433 46788999998863
No 243
>KOG4584|consensus
Probab=23.32 E-value=4e+02 Score=22.70 Aligned_cols=98 Identities=26% Similarity=0.314 Sum_probs=50.2
Q ss_pred CEEEEEec--CccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCC--CC--
Q psy9724 1 MSLVLSVD--RLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFT--TP-- 74 (140)
Q Consensus 1 k~iil~Vd--Rld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g--~~-- 74 (140)
|+.++++| -+|++=|+.--. ++||++- -++.|++-..|.-.++. |.++.+-+.+++..-|.... +.
T Consensus 200 K~~lif~DNSG~DvILGilPf~---Rellr~g----t~vil~ans~palNdvt-~~el~~l~~~~~~~~~~l~~~~~~~~ 271 (348)
T KOG4584|consen 200 KCALIFVDNSGFDVILGILPFA---RELLRRG----TEVILCANSSPALNDVT-YSELKELAAELANDCNVLLKAIDTGQ 271 (348)
T ss_pred ceEEEEecCCCcceeeeecHHH---HHHHhCC----CeEEEEecCcchhcccc-HHHHHHHHHhhccCChHHHHHhhhcc
Confidence 56778887 666666664322 3455532 25677777767554432 33443333332222221110 00
Q ss_pred -------CcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCce
Q psy9724 75 -------NWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSN 112 (140)
Q Consensus 75 -------~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGmnL 112 (140)
.-.|+.= ...++ .|+.++-+-||.+++ |||+-
T Consensus 272 ll~~~~G~~~pciD-lrrvs-qeLa~l~~daDLVVi----EGMGR 310 (348)
T KOG4584|consen 272 LLVVQNGQDSPCID-LRRVS-QELAYLSSDADLVVI----EGMGR 310 (348)
T ss_pred eEEeecCCCCceee-HHhhh-HHHHHHhcCCCEEEE----eccch
Confidence 0112211 12344 458899999999987 77753
No 244
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.20 E-value=2.5e+02 Score=23.34 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=30.6
Q ss_pred EEEEeCCCCHHHHHHHHHHcCEEEECCCCCCCcee--eecCCceeeecCCCCcccc
Q psy9724 79 IRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS--FSRSGNFRIKSAPSGNRTH 132 (140)
Q Consensus 79 v~~~~~~~~~~el~aly~~ADv~vvts~rdGmnLv--A~~~G~~~v~~~~gg~~~~ 132 (140)
+.+ ..+++..++.++++.|++++-.|- ++. |+--|+|+|.=+-.|.|-+
T Consensus 241 v~~-~~~l~~~~~l~ll~~a~~vvgdSs----GI~eEa~~lg~P~v~iR~~geRqe 291 (346)
T PF02350_consen 241 VRL-IEPLGYEEYLSLLKNADLVVGDSS----GIQEEAPSLGKPVVNIRDSGERQE 291 (346)
T ss_dssp EEE-E----HHHHHHHHHHESEEEESSH----HHHHHGGGGT--EEECSSS-S-HH
T ss_pred EEE-ECCCCHHHHHHHHhcceEEEEcCc----cHHHHHHHhCCeEEEecCCCCCHH
Confidence 544 668999999999999999998884 444 4444999988766666544
No 245
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=23.11 E-value=3e+02 Score=20.02 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=43.0
Q ss_pred EEEEEecCccccC-C---HHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCC-Cc
Q psy9724 2 SLVLSVDRLDYTK-G---LVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTP-NW 76 (140)
Q Consensus 2 ~iil~VdRld~~K-G---i~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~-~~ 76 (140)
++|+-+|-+++.. + ....+.++..+++..++ ..++.+|..++. . .+.. .++...++. +.
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S~-----~---~~~~-------~~~~~~~~~~~~ 182 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNVSIVITGSS-----D---SLME-------EFLDDKSPLFGR 182 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESS-----H---HHHH-------HTT-TTSTTTT-
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCceEEEECCc-----h---HHHH-------HhhcccCccccc
Confidence 5899999999999 3 36778899999988443 345666655533 1 1111 122322222 22
Q ss_pred ccEEEEeCCCCHHHHHHHHHH
Q psy9724 77 SPIRYIYGCISQDELASFYRD 97 (140)
Q Consensus 77 ~pv~~~~~~~~~~el~aly~~ 97 (140)
... +.-++++.+|...+++.
T Consensus 183 ~~~-~~l~~l~~~e~~~~~~~ 202 (234)
T PF01637_consen 183 FSH-IELKPLSKEEAREFLKE 202 (234)
T ss_dssp --E-EEE----HHHHHHHHHH
T ss_pred cce-EEEeeCCHHHHHHHHHH
Confidence 333 44678899998888876
No 246
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.06 E-value=2.8e+02 Score=19.60 Aligned_cols=35 Identities=9% Similarity=0.232 Sum_probs=17.4
Q ss_pred CeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcC
Q psy9724 36 KVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGR 70 (140)
Q Consensus 36 kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~ 70 (140)
+++++++|+--.....+-.++.+.+++++..+-.+
T Consensus 50 d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~ 84 (169)
T cd01828 50 KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKH 84 (169)
T ss_pred CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55677777532211111234555666666666554
No 247
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=22.96 E-value=2e+02 Score=23.90 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=30.8
Q ss_pred eCCCCHHHHHHHHHHcC-------EEEECCCCCCCcee-eecCCceeee
Q psy9724 83 YGCISQDELASFYRDAA-------VALVTPLRDEWSNS-FSRSGNFRIK 123 (140)
Q Consensus 83 ~~~~~~~el~aly~~AD-------v~vvts~rdGmnLv-A~~~G~~~v~ 123 (140)
....+.+|+.+|+..-. -+++.+--||+.+. -.++|..+=+
T Consensus 78 ~k~~~~~el~~~~~r~~~~~~~~~~~~vepKiDGlsisL~Y~~G~L~~a 126 (307)
T cd00114 78 DNAFDEEELRAFDERIKRFLGEEPAYVVEPKIDGLSISLRYENGVLVQA 126 (307)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCcEEEEEeccceEEEEEEECCEEEEE
Confidence 34568899999987764 58999999999886 5566766533
No 248
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=22.87 E-value=2.9e+02 Score=23.19 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=14.4
Q ss_pred EEEEecCccccCCH---HHHHHHHHHHH
Q psy9724 3 LVLSVDRLDYTKGL---VHRLKAFETLL 27 (140)
Q Consensus 3 iil~VdRld~~KGi---~~kl~A~~~~L 27 (140)
+|++|+|+|-.+.- ...++.+..++
T Consensus 121 vVLyV~rLD~~R~~~~DkqlLk~Iqe~F 148 (313)
T TIGR00991 121 VLLYVDRLDAYRVDTLDGQVIRAITDSF 148 (313)
T ss_pred EEEEEeccCcccCCHHHHHHHHHHHHHh
Confidence 68888888754432 33344444444
No 249
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=22.77 E-value=1.1e+02 Score=27.57 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=36.9
Q ss_pred HHHHHhCCCCCCCeEEE-EEecCCCCChh--HHHHHHHHHHHHHHHHhcCCCC-CCcccEEEEeCC----CCHHHHHHH
Q psy9724 24 ETLLEKHPEHLEKVTLL-QIAVPSRTDVK--EYQDLKEEMDQLVGRINGRFTT-PNWSPIRYIYGC----ISQDELASF 94 (140)
Q Consensus 24 ~~~L~~~P~~~~kv~Lv-qi~~psr~~~~--~y~~~~~~l~~lv~~IN~~~g~-~~~~pv~~~~~~----~~~~el~al 94 (140)
..+|+-||++-++...- +++..|+.++. .-..+.++..+...+.|.+|-. +|+.=|.+..+. -+.+++.+.
T Consensus 63 ~~~l~~HP~lg~~~~~~~~~~~~S~~EQ~~agl~~~~~~~~~~l~~lN~~Y~~kFGf~fii~~~g~~~~~~~~~~il~~ 141 (591)
T PRK13799 63 LDLIRAHPELAGKAAEAGELTAESTGEQAKAGLNLCTPEEFAAIQKLNADYGKKFGFPFILAVKGARGAGLAKAEIIAT 141 (591)
T ss_pred HHHHHhCcccccCcccccccchhhHhHHHhhhcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEcCcccCCCCHHHHHHH
Confidence 34688899998775433 11222322221 1112233444555567776633 456667776654 356666553
No 250
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=22.47 E-value=3.1e+02 Score=19.84 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCC
Q psy9724 37 VTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTP 74 (140)
Q Consensus 37 v~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~ 74 (140)
.-+|.++-+...+ .+|.++.+++..+..++....+.+
T Consensus 84 ~DiVviaR~~~~~-~~~~~l~~~l~~ll~kl~~~~~~~ 120 (130)
T PRK00396 84 WDIVVVARKGLGE-LENPELHQQFGKLWKRLARNRPNP 120 (130)
T ss_pred eeEEEEeCCCccc-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456666554333 567899999999999987766654
No 251
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=22.34 E-value=1.9e+02 Score=26.69 Aligned_cols=98 Identities=22% Similarity=0.298 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhc---------C--------CCCCCc-ccEE
Q psy9724 19 RLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRING---------R--------FTTPNW-SPIR 80 (140)
Q Consensus 19 kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~---------~--------~g~~~~-~pv~ 80 (140)
+++.+.+.+++|-.. ..+.+.|.-+| .+|..+.+++.++-.+.-. + |.+..+ .|..
T Consensus 8 ~i~~L~~~i~~~~~~-----YY~~~~p~IsD-~eYD~L~~~L~~le~~~p~~~~~~Spt~~VG~~~~~~f~kv~H~~pMl 81 (665)
T PRK07956 8 RIEELREELNHHAYA-----YYVLDAPSISD-AEYDRLYRELVALEAEHPELITPDSPTQRVGGAPLDGFEKVRHLVPML 81 (665)
T ss_pred HHHHHHHHHHHHHHH-----HHhCCCCCCCh-HHHHHHHHHHHHHHHhCcccCCCCCCccccCccccccCcceeCCCcCc
Confidence 455566656555442 23445565554 6688888887777544210 1 111111 1222
Q ss_pred EEeCCCCHHHHHHHHHHcC--------EEEECCCCCCCcee-eecCCceee
Q psy9724 81 YIYGCISQDELASFYRDAA--------VALVTPLRDEWSNS-FSRSGNFRI 122 (140)
Q Consensus 81 ~~~~~~~~~el~aly~~AD--------v~vvts~rdGmnLv-A~~~G~~~v 122 (140)
-+....+.+|+.+|+..-. -+++.+--||+.+. -.++|..+-
T Consensus 82 SL~k~~~~~el~~w~~r~~~~~~~~~~~~~~epKiDGlsisL~Y~~G~L~~ 132 (665)
T PRK07956 82 SLDNAFSEEELRAFDKRVRKRLPDPPLTYLCELKIDGLAVSLLYENGVLVR 132 (665)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCcceEEEEecccEEEEEEEECCEEEE
Confidence 2234568899999987663 38999999999875 556676653
No 252
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=22.22 E-value=2.6e+02 Score=19.42 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECCCCCCC----ceeeecCCceeeecCCCCc
Q psy9724 60 MDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEW----SNSFSRSGNFRIKSAPSGN 129 (140)
Q Consensus 60 l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts~rdGm----nLvA~~~G~~~v~~~~gg~ 129 (140)
+.+.+.++|. +..+..+...++.+....+++-+|+.+.+.-.-.. |-.+...|.|.|.+...|.
T Consensus 61 ~~~~l~~~np------~~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~ 128 (135)
T PF00899_consen 61 AKERLQEINP------DVEVEAIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGF 128 (135)
T ss_dssp HHHHHHHHST------TSEEEEEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred HHHHHHHhcC------ceeeeeeecccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 3444555543 34567778888889999999999988876543221 2125556888888776554
No 253
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=22.18 E-value=78 Score=22.34 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=35.5
Q ss_pred cEEEEeCCCCHHHHHHHHHHcCEEEECCCCCC----CceeeecCCceeeecCCCCccc
Q psy9724 78 PIRYIYGCISQDELASFYRDAAVALVTPLRDE----WSNSFSRSGNFRIKSAPSGNRT 131 (140)
Q Consensus 78 pv~~~~~~~~~~el~aly~~ADv~vvts~rdG----mnLvA~~~G~~~v~~~~gg~~~ 131 (140)
.+..+...++.+....++..+|+.+.+.-.-- +|-.+.+.|.|.|.+...|...
T Consensus 70 ~i~~~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g 127 (143)
T cd01483 70 NVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGG 127 (143)
T ss_pred EEEEEeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence 34444555666656788899999988765411 1222555689999998887543
No 254
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=21.97 E-value=4.2e+02 Score=21.20 Aligned_cols=40 Identities=10% Similarity=-0.059 Sum_probs=28.8
Q ss_pred eCCCCHHHHHHHHHHcCEEEECCCCCCCcee-eecCCceeeecC
Q psy9724 83 YGCISQDELASFYRDAAVALVTPLRDEWSNS-FSRSGNFRIKSA 125 (140)
Q Consensus 83 ~~~~~~~el~aly~~ADv~vvts~rdGmnLv-A~~~G~~~v~~~ 125 (140)
.+..+-.|+.++++.||+++-+-. ..|-+- |+ |+|+|+=.
T Consensus 239 ~g~~sL~elaali~~a~l~I~nDS-Gp~HlA~A~--g~p~valf 279 (322)
T PRK10964 239 LPKLSLEQVARVLAGAKAVVSVDT-GLSHLTAAL--DRPNITLY 279 (322)
T ss_pred cCCCCHHHHHHHHHhCCEEEecCC-cHHHHHHHh--CCCEEEEE
Confidence 467899999999999998876542 344443 66 88888643
No 255
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.74 E-value=3e+02 Score=19.46 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=16.6
Q ss_pred EEEEEecCccccCC------HHHHHHHHHHHHHh
Q psy9724 2 SLVLSVDRLDYTKG------LVHRLKAFETLLEK 29 (140)
Q Consensus 2 ~iil~VdRld~~KG------i~~kl~A~~~~L~~ 29 (140)
-+++.+|.=|...+ +..-...++.+++.
T Consensus 64 ~v~l~~G~ND~~~~~~~~~~~~~~~~~l~~~v~~ 97 (191)
T cd01834 64 VVSIMFGINDSFRGFDDPVGLEKFKTNLRRLIDR 97 (191)
T ss_pred EEEEEeecchHhhcccccccHHHHHHHHHHHHHH
Confidence 35666666666654 55555666666654
No 256
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.64 E-value=1.4e+02 Score=21.49 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhc
Q psy9724 21 KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRING 69 (140)
Q Consensus 21 ~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~ 69 (140)
.++|-+|.-+|.++.++-..-|.-|. =|..+-+++++=|+
T Consensus 28 ~~iEGlLa~~P~l~~~ldV~rV~f~R---------PR~~vi~llGE~~Q 67 (112)
T PF11287_consen 28 AAIEGLLASFPDLRERLDVRRVDFPR---------PRQAVIALLGEANQ 67 (112)
T ss_pred HHHHhHHhhChhhhhcccEEEeCCCC---------chHHHHHHhChhcc
Confidence 36788899999999988888887662 25666777777665
No 257
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=21.49 E-value=4.7e+02 Score=21.60 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEEEec-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHH
Q psy9724 30 HPEHLEKVTLLQIAV-PSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYR 96 (140)
Q Consensus 30 ~P~~~~kv~Lvqi~~-psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~ 96 (140)
-|+....+...++.. +|.. .. -+...+++++|+......++.-++..++.-+.+|...++.
T Consensus 37 ~~~~~~~~~~~~~~~idSs~-~t-----~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls 98 (323)
T smart00870 37 LPELADDIEVEQVFNIDSSN-MT-----PADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLS 98 (323)
T ss_pred hhcccCceEEEEecCCCccc-CC-----HHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHH
Confidence 344443566666654 4332 11 1223455556655333334556777789999999877654
No 258
>PRK11096 ansB L-asparaginase II; Provisional
Probab=21.24 E-value=5.1e+02 Score=21.89 Aligned_cols=67 Identities=22% Similarity=0.186 Sum_probs=41.5
Q ss_pred HHHHHHhCCCCCC--CeEEEEEec-CCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHH
Q psy9724 23 FETLLEKHPEHLE--KVTLLQIAV-PSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRD 97 (140)
Q Consensus 23 ~~~~L~~~P~~~~--kv~Lvqi~~-psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ 97 (140)
.+++++.-|++.+ ++...|+.. +|. +.. .+...++++.|+..+ .++.-++..++.-+.++...++..
T Consensus 53 ~~~ll~~vp~l~~~~~i~~~~~~~~dS~-~~t-----~~~~~~l~~~i~~~~--~~~dGiVVtHGTDTme~tA~~Ls~ 122 (347)
T PRK11096 53 VENLVNAVPQLKDIANVKGEQVVNIGSQ-DMN-----DEVWLTLAKKINTDC--DKTDGFVITHGTDTMEETAYFLDL 122 (347)
T ss_pred HHHHHHhCccccccceEEEEEcccCCcc-cCC-----HHHHHHHHHHHHHhc--CCCCEEEEeCCCchHHHHHHHHHH
Confidence 3678888888775 466667654 332 221 122245666666543 345667788888899988776654
No 259
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=20.82 E-value=4.5e+02 Score=21.15 Aligned_cols=42 Identities=19% Similarity=0.461 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCC
Q psy9724 23 FETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFT 72 (140)
Q Consensus 23 ~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g 72 (140)
|++-.+++|+. +.++- .....=.|+++.+.+.+++..+. +.|
T Consensus 1 f~~~a~~~pd~---~a~~~----~~~~~~Ty~~l~~~v~~la~~L~-~~g 42 (417)
T PF00501_consen 1 FERQAQRYPDR---IALID----DEGRSLTYKQLYERVRKLAAALR-KLG 42 (417)
T ss_dssp HHHHHHHSTTS---EEEEE----TTTEEEEHHHHHHHHHHHHHHHH-HTT
T ss_pred ChhHHhhCCCc---eEEEE----CCCEEEEHHHHHHHHHHHhhHHH-HhC
Confidence 67788888885 34433 22333558888999999998887 444
No 260
>TIGR03678 het_cyc_patell bacteriocin leader peptide, microcyclamide/patellamide family. This model represents a conserved N-terminal region shared by microcyclamide and patellamide bacteriocins precursors. These bacteriocin precursors are associated with heterocyclization.
Probab=20.56 E-value=55 Score=18.52 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.2
Q ss_pred cCCceeeecCCCCcccccccc
Q psy9724 116 RSGNFRIKSAPSGNRTHDLAL 136 (140)
Q Consensus 116 ~~G~~~v~~~~gg~~~~~~~~ 136 (140)
|||.|+.-+..|-+|+|--.|
T Consensus 9 qQ~~Pi~R~taGqLp~~lAEL 29 (34)
T TIGR03678 9 QQGAPVIRGTAGKLPSHLAEL 29 (34)
T ss_pred ccCCCeeecccccCcHHHHHh
Confidence 589999999999999875433
No 261
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=20.53 E-value=2.5e+02 Score=18.77 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=24.6
Q ss_pred EEEEecCcccc-CCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC
Q psy9724 3 LVLSVDRLDYT-KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPS 46 (140)
Q Consensus 3 iil~VdRld~~-KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~ps 46 (140)
.++-+|-+|.+ + ...+..+..+.+ ..++.+|.+|.|+
T Consensus 89 ~~lviDe~~~l~~--~~~l~~l~~l~~-----~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 89 VLLVIDEADHLFS--DEFLEFLRSLLN-----ESNIKVVLVGTPE 126 (131)
T ss_dssp EEEEEETTHHHHT--HHHHHHHHHHTC-----SCBEEEEEEESST
T ss_pred eEEEEeChHhcCC--HHHHHHHHHHHh-----CCCCeEEEEEChh
Confidence 57888888887 5 444444444433 4578888888884
No 262
>PRK00431 RNase III inhibitor; Provisional
Probab=20.48 E-value=2e+02 Score=21.35 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=30.0
Q ss_pred EecCccccCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHH
Q psy9724 6 SVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMD 61 (140)
Q Consensus 6 ~VdRld~~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~ 61 (140)
|+.++.+......-++|+.+|+++++. ..+|.|+.. +.++|+.+++.+.
T Consensus 124 G~~g~p~~~~A~~~~~~i~~f~~~~~~-l~~I~~v~~------~~~~~~~f~~~l~ 172 (177)
T PRK00431 124 GVYGYPLEDAARIAVKTVREFLTRHKS-PEEVYFVCY------DEEAYRLYERLLT 172 (177)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCC-cCEEEEEEC------CHHHHHHHHHHHH
Confidence 455666677777888899999876653 344554432 2355555555444
No 263
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=20.46 E-value=2.7e+02 Score=23.40 Aligned_cols=72 Identities=19% Similarity=0.165 Sum_probs=41.5
Q ss_pred CCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEE--------eCCCCHHHHHHHHHHcCEEE
Q psy9724 31 PEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI--------YGCISQDELASFYRDAAVAL 102 (140)
Q Consensus 31 P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~--------~~~~~~~el~aly~~ADv~v 102 (140)
|....++.+||..+.-......| ....-+.+++.+.|+++-.. ..|...- .+.-.-.+...+++.||+.+
T Consensus 135 ~~~~~~~~vV~l~GG~~~~~~~~-~~~~~~~~~A~k~~~~~~~l-~aP~~~~s~e~r~~l~~e~~v~~vl~~~~~ad~al 212 (321)
T COG2390 135 PAPLRDVKVVQLTGGVGHADGSY-NANTIALRLAEKLGAESYLL-PAPLVASSPELREALLQEPSVREVLDLARSADLAL 212 (321)
T ss_pred cCccCCeEEEECCCCCCCCcccc-CHHHHHHHHHHHhCCcEEee-ecCccCCCHHHHHHHHhCcHHHHHHHHHHhCCEEE
Confidence 44467899999866544222233 22344567788777664332 2343221 12334556677899999998
Q ss_pred EC
Q psy9724 103 VT 104 (140)
Q Consensus 103 vt 104 (140)
|.
T Consensus 213 vG 214 (321)
T COG2390 213 VG 214 (321)
T ss_pred Ee
Confidence 73
No 264
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=20.42 E-value=2.8e+02 Score=26.08 Aligned_cols=92 Identities=18% Similarity=0.350 Sum_probs=49.7
Q ss_pred cccCCHHHHH--HH-HHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHHHHHHHHHHHHHhcCCCCCCcccEEEEeCCCC
Q psy9724 11 DYTKGLVHRL--KA-FETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCIS 87 (140)
Q Consensus 11 d~~KGi~~kl--~A-~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~~~~l~~lv~~IN~~~g~~~~~pv~~~~~~~~ 87 (140)
..-||+..+- ++ ++.|-++.|...+++....+..+ +++.++.++....-++=-.+-..+.-..|..+++-
T Consensus 417 A~~KGf~l~hIGkvL~~~~k~eFp~iVdkvqVtiiTd~-----e~V~el~~~A~~~y~~RD~R~~~l~de~vd~fY~C-- 489 (711)
T PRK09529 417 AFEKGFRLKHIGEILYAKFKQEFPSIVDKVQVTLYTDP-----EKVLELLEKARAIYKKRDERLKGLTDEDVDTFYSC-- 489 (711)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhhhhEEEEEEEeCH-----HHHHHHHHHHHHHHHHHHHHHhhCcccCccceecc--
Confidence 3446655321 12 23455567778888888777655 33333333322222222222222333445444433
Q ss_pred HHHHHHHHHHcCEEEECCCCCCCc
Q psy9724 88 QDELASFYRDAAVALVTPLRDEWS 111 (140)
Q Consensus 88 ~~el~aly~~ADv~vvts~rdGmn 111 (140)
.|+-=++=+.||+|||=|=|++
T Consensus 490 --~lCQsFAP~hVCvvtPeR~~lC 511 (711)
T PRK09529 490 --TLCQSFAPTHVCVVTPERPGLC 511 (711)
T ss_pred --hhhhccCCceeEEECCCCCccc
Confidence 2455577899999999998874
No 265
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=2e+02 Score=24.79 Aligned_cols=40 Identities=13% Similarity=0.392 Sum_probs=30.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCChhHHHHH
Q psy9724 13 TKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDL 56 (140)
Q Consensus 13 ~KGi~~kl~A~~~~L~~~P~~~~kv~Lvqi~~psr~~~~~y~~~ 56 (140)
.+|-..|.++++..|.++|+. .++-+|.....+.+.|.++
T Consensus 258 ~sga~rK~~~l~nil~~~p~~----kfvLVGDsGE~DpeIYae~ 297 (373)
T COG4850 258 ESGAARKGQSLRNILRRYPDR----KFVLVGDSGEHDPEIYAEM 297 (373)
T ss_pred cchhhhcccHHHHHHHhCCCc----eEEEecCCCCcCHHHHHHH
Confidence 356677888999999999987 5888887776777777544
No 266
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.14 E-value=1.7e+02 Score=20.46 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=28.9
Q ss_pred EEEEEecCccccCCHHHHHHHHHHHHHhCCCC
Q psy9724 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEH 33 (140)
Q Consensus 2 ~iil~VdRld~~KGi~~kl~A~~~~L~~~P~~ 33 (140)
+|.+..+-+|-.|||+-...-.++-+...|--
T Consensus 3 ri~l~~~~vDmRkg~dgL~~lV~~~~~~dp~~ 34 (107)
T PF05717_consen 3 RIYLACGPVDMRKGIDGLAALVREELGLDPFS 34 (107)
T ss_pred EEEEEeCCcccccChhHHHHHHHHhhcCCCCc
Confidence 68899999999999999999999999888853
No 267
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=20.14 E-value=1e+02 Score=25.77 Aligned_cols=33 Identities=12% Similarity=0.418 Sum_probs=21.3
Q ss_pred HHHhcCCCCCCcccEEEEeCCCCHHHHHHHHHHcCEEEECC
Q psy9724 65 GRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTP 105 (140)
Q Consensus 65 ~~IN~~~g~~~~~pv~~~~~~~~~~el~aly~~ADv~vvts 105 (140)
.++..+| ++..+|.|++ |.+|.-| .+|+|+.+|
T Consensus 92 ~~~k~~~--p~~~vV~YVN---ssAevKA---~sdi~cTSs 124 (296)
T PF02445_consen 92 RELKEEY--PDAAVVTYVN---SSAEVKA---ESDICCTSS 124 (296)
T ss_dssp HHHHHHS--TTS-EEEESS---S-HHHHT---T-SEEE-TT
T ss_pred HHHHHHC--CCCeEEEEec---ChHHHHc---cCCeEEECc
Confidence 4455555 5678899988 6677777 899998776
Done!