RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9724
(140 letters)
>gnl|CDD|99963 cd03788, GT1_TPS, Trehalose-6-Phosphate Synthase (TPS) is a
glycosyltransferase that catalyses the synthesis of
alpha,alpha-1,1-trehalose-6-phosphate from
glucose-6-phosphate using a UDP-glucose donor. It is a
key enzyme in the trehalose synthesis pathway. Trehalose
is a nonreducing disaccharide present in a wide variety
of organisms and may serve as a source of energy and
carbon. It is characterized most notably in insect,
plant, and microbial cells. Its production is often
associated with a variety of stress conditions,
including desiccation, dehydration, heat, cold, and
oxidation. This family represents the catalytic domain
of the TPS. Some members of this domain family coexist
with a C-terminal trehalose phosphatase domain.
Length = 460
Score = 192 bits (490), Expect = 2e-60
Identities = 66/106 (62%), Positives = 87/106 (82%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
L++ VDRLDY+KG+ RL AFE LLE++PE KV L+QIAVPSRTDV EYQ+L+ E+++
Sbjct: 266 LIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEE 325
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
LVGRING+F T +W+P+RY+Y + ++ELA+ YR A VALVTPLRD
Sbjct: 326 LVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRD 371
>gnl|CDD|233848 TIGR02400, trehalose_OtsA, alpha,alpha-trehalose-phosphate synthase
[UDP-forming]. This enzyme catalyzes the key,
penultimate step in biosynthesis of trehalose, a
compatible solute made as an osmoprotectant in some
species in all three domains of life. The gene symbol
OtsA stands for osmotically regulated trehalose
synthesis A. Trehalose helps protect against both
osmotic and thermal stresses, and is made from two
glucose subunits. This model excludes
glucosylglycerol-phosphate synthase, an enzyme of an
analogous osmoprotectant system in many cyanobacterial
strains. This model does not identify archaeal examples,
as they are more divergent than
glucosylglycerol-phosphate synthase. Sequences that
score in the gray zone between the trusted and noise
cutoffs include a number of yeast multidomain proteins
in which the N-terminal domain may be functionally
equivalent to this family. The gray zone also includes
the OtsA of Cornyebacterium glutamicum (and related
species), shown to be responsible for synthesis of only
trace amounts of trehalose while the majority is
synthesized by the TreYZ pathway; the significance of
OtsA in this species is unclear (see Wolf, et al.,
PMID:12890033) [Cellular processes, Adaptations to
atypical conditions].
Length = 456
Score = 173 bits (441), Expect = 3e-53
Identities = 64/107 (59%), Positives = 80/107 (74%)
Query: 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMD 61
L++ VDRLDY+KGL RL AFE LE+HPE KV L+QIAVPSR DV EYQ L+ +++
Sbjct: 260 KLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVE 319
Query: 62 QLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
+LVGRINGRF T +W+PIRY+ ++EL + YR A V LVTPLRD
Sbjct: 320 ELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRD 366
>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
synthase/HAD hydrolase subfamily IIB; Provisional.
Length = 726
Score = 174 bits (444), Expect = 4e-52
Identities = 64/106 (60%), Positives = 81/106 (76%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
++LS+DRLDYTKG+ RL AFE LEK+PE KV L+Q+AVPSRT V +YQ++K E+D+
Sbjct: 267 IILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDE 326
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
LVGRING F T +W+PI Y Y + +EL + YR A VALVTPLRD
Sbjct: 327 LVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRD 372
>gnl|CDD|216227 pfam00982, Glyco_transf_20, Glycosyltransferase family 20. Members
of this family belong to glycosyl transferase family 20.
OtsA (Trehalose-6-phosphate synthase) is homologous to
regions in the subunits of yeast trehalose-6-phosphate
synthase/phosphate complex.
Length = 470
Score = 153 bits (389), Expect = 1e-45
Identities = 56/108 (51%), Positives = 78/108 (72%)
Query: 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEM 60
L+L VDRLDY KG+ +L AFE LE++PE KV L+QIAVPSR DV+EYQ+L+ ++
Sbjct: 272 KKLILGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAVPSRGDVEEYQNLRSQV 331
Query: 61 DQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
++LVGRING F T +++P+ +++ + DEL + Y A V LVT LRD
Sbjct: 332 EELVGRINGEFGTLDYTPVHHLHRSLDFDELIALYAIADVCLVTSLRD 379
>gnl|CDD|223457 COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate
transport and metabolism].
Length = 486
Score = 148 bits (376), Expect = 1e-43
Identities = 59/108 (54%), Positives = 81/108 (75%)
Query: 1 MSLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEM 60
L++ VDRLDY+KG+ RL AFE LLE++PE KV LLQIA PSR DV+EYQ L+ ++
Sbjct: 282 KKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQI 341
Query: 61 DQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
++LVGRING F + +W+P+ Y++ + ++EL + YR A V LVTPLRD
Sbjct: 342 EELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRD 389
>gnl|CDD|215555 PLN03063, PLN03063, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 797
Score = 114 bits (287), Expect = 2e-30
Identities = 51/106 (48%), Positives = 70/106 (66%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
++L VDRLD KG+ + AFE LE++PE +KV L+QIAVP+R DV EYQ LK ++ +
Sbjct: 281 VILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHE 340
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
LVGRINGRF + + PI ++ + + L + Y V LVT LRD
Sbjct: 341 LVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRD 386
>gnl|CDD|131451 TIGR02398, gluc_glyc_Psyn, glucosylglycerol-phosphate synthase.
Glucosylglycerol-phosphate synthase catalyzes the key
step in the biosynthesis of the osmolyte
glucosylglycerol. It is known in several cyanobacteria
and in Pseudomonas anguilliseptica. The enzyme is
closely related to the alpha,alpha-trehalose-phosphate
synthase, likewise involved in osmolyte biosynthesis, of
E. coli and many other bacteria. A close homolog from
Xanthomonas campestris is excluded from this model and
scores between trusted and noise.
Length = 487
Score = 112 bits (282), Expect = 3e-30
Identities = 45/106 (42%), Positives = 74/106 (69%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
L+LS +R+DYTKG++ +L A+E LLE+ PE L KVTL+ VP+ + + Y +L+ +++Q
Sbjct: 287 LILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQ 346
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
VGRINGRF W+P+++ + +E+++++ A V +TPLRD
Sbjct: 347 AVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRD 392
>gnl|CDD|215556 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 111 bits (278), Expect = 3e-29
Identities = 53/104 (50%), Positives = 68/104 (65%)
Query: 5 LSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLV 64
L VDRLD KG+ ++ AFE LE++PE +KV LLQIAVP+RTDV EYQ L ++ ++V
Sbjct: 367 LGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIV 426
Query: 65 GRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
GRINGRF T PI ++ + L + Y VALVT LRD
Sbjct: 427 GRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRD 470
>gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional.
Length = 474
Score = 109 bits (275), Expect = 3e-29
Identities = 47/105 (44%), Positives = 68/105 (64%)
Query: 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQL 63
+ SV+RLDY+KGL R A+E LLEK+P+H K+ QIA SR DV+ YQD++ +++
Sbjct: 258 IFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETE 317
Query: 64 VGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
GRING++ W+P+ Y+ + L +R + V LVTPLRD
Sbjct: 318 AGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRD 362
>gnl|CDD|177855 PLN02205, PLN02205, alpha,alpha-trehalose-phosphate synthase
[UDP-forming].
Length = 854
Score = 71.6 bits (175), Expect = 2e-15
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
++L VD +D KG+ +L A E LL +HPE KV L+QIA P+R K+ ++++ E
Sbjct: 341 MLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHS 400
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD-----EWSNSFSRS 117
V RIN F P + PI I + E ++Y A LVT +RD + SR
Sbjct: 401 TVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQ 460
Query: 118 GNFRI 122
GN ++
Sbjct: 461 GNEKL 465
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 36.9 bits (86), Expect = 0.001
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
++L V RL KGL L+AF L E+HP L I D +E + LK+ +
Sbjct: 4 IILFVGRLVPEKGLDLLLEAFALLKEQHPN-----LKLVIV----GDGEEEKKLKKLALK 54
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDE 109
L N F G + ++L YR A + V P R E
Sbjct: 55 LGLEDNVIFV-----------GFVPDEDLIELYRIADL-FVLPSRYE 89
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
to the GT1 family of glycosyltransferases. The
sucrose-phosphate synthases in this family may be unique
to plants and photosynthetic bacteria. This enzyme
catalyzes the synthesis of sucrose 6-phosphate from
fructose 6-phosphate and uridine 5'-diphosphate-glucose,
a key regulatory step of sucrose metabolism. The
activity of this enzyme is regulated by phosphorylation
and moderated by the concentration of various
metabolites and light.
Length = 398
Score = 35.6 bits (83), Expect = 0.005
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLE---KHPEHLEKVTLLQIAVPSRTDVKEYQDLKEE 59
+L+V RLD K +TL+ + PE E+ L+ + P + ++ E
Sbjct: 222 RILAVGRLD-------PRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRE 274
Query: 60 MDQLVGRINGRFTTPNWSPIRYIY-GCISQDELASFYRDAAVALVTPL 106
+ + +G I+ R + G +S+++L + YR A V + L
Sbjct: 275 LARELGVID-----------RVDFPGRVSREDLPALYRAADVFVNPAL 311
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol)
ligase, subunit 1. This model represents the enzyme
(also called D-alanine-D-alanyl carrier protein ligase)
which activates D-alanine as an adenylate via the
reaction D-ala + ATP -> D-ala-AMP + PPi, and further
catalyzes the condensation of the amino acid adenylate
with the D-alanyl carrier protein (D-ala-ACP). The
D-alanine is then further transferred to teichoic acid
in the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 35.5 bits (82), Expect = 0.005
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 20 LKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79
++A + E +P+ IA + YQ LKE+ D+L I R P SPI
Sbjct: 3 IEAIQAFAETYPQT--------IAYRYQGQELTYQQLKEQSDRLAAFIQKR-ILPKKSPI 53
Query: 80 RYIYGCISQDELASF 94
+YG + L +F
Sbjct: 54 -IVYGHMEPHMLVAF 67
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 35.0 bits (81), Expect = 0.008
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 28/118 (23%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
++L + RL KGL ++AF L E+ P+ L+ IA P D Y+ +++
Sbjct: 205 IILFLGRLHPKKGLDLLIEAFAKLAERFPD----WHLV-IAGP---DEGGYRAELKQIAA 256
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNF 120
+G + R T G + ++ A+ DA + V P S S NF
Sbjct: 257 ALG-LEDRVT---------FTGMLYGEDKAAALADADL-FVLP---------SHSENF 294
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase
subunit 1; Provisional.
Length = 503
Score = 33.3 bits (77), Expect = 0.025
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 20 LKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPI 79
++ E + P+ A + Y LKE+ D L I+ P+ SPI
Sbjct: 5 IETIEEFAQTQPD--------FPAYDYLGEKLTYGQLKEDSDALAAFIDSL-KLPDKSPI 55
Query: 80 RYIYGCISQDELASF 94
++G +S + LA+F
Sbjct: 56 -IVFGHMSPEMLATF 69
>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family. This family includes eukaryotic
translation initiation factor 6 as well as presumed
archaebacterial homologues.
Length = 197
Score = 30.9 bits (71), Expect = 0.15
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 42 IAVPSRTDVKEYQDLKEEMDQLVGRINGRFT 72
+ VPS +E LKE +D V R+ + T
Sbjct: 65 LLVPSTATDEELDHLKESLDVNVERLEEKLT 95
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea.
Length = 374
Score = 30.8 bits (70), Expect = 0.17
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
++L V RL KG+ L+A L +++P+ V L+ I D ++L+ +
Sbjct: 201 VILFVGRLVPRKGVDLLLEALAKLRKEYPD----VRLV-IV----GDGPLREELEALAAE 251
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNSF 114
L F G + ++L + Y A V ++ L + +
Sbjct: 252 LGLGDRVTFL-----------GFVPDEDLPALYAAADVFVLPSLYEGFGLVL 292
>gnl|CDD|234487 TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG-Bacteroidales
peptide system. Members of this protein family are
predicted glycosyltransferases that occur in conserved
gene neighborhoods in various members of the
Bacteroidales. These neighborhoods feature a radical SAM
enzyme predicted to act in peptide modification (family
TIGR04148), peptides from family TIGR04149 with a
characteristic GG cleavage motif, and several other
proteins.
Length = 406
Score = 30.7 bits (70), Expect = 0.20
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPE-HL 34
++L V RLD KG+ + ++AF+ +L+K P L
Sbjct: 229 IILFVGRLDEIKGVDYLIEAFKIVLKKDPNCRL 261
>gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to
the GT1 family of glycosyltransferases. ORF704 in E.
coli has been shown to be involved in the biosynthesis
of O-specific mannose homopolysaccharides.
Length = 366
Score = 29.9 bits (68), Expect = 0.38
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 14 KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT 73
KGL L+A L+ KHP+ V LL +A + D++ Y+ + + +G + R
Sbjct: 198 KGLELLLEALPLLVAKHPD----VRLL-VAGETHPDLERYRGEAYALAERLG-LADRVIF 251
Query: 74 PNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNSFSRSGNFRI 122
N RY + +EL + A V +V P R ++SG
Sbjct: 252 IN----RY----LPDEELPELFSAADV-VVLPYRSA---DQTQSGVLAY 288
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 791
Score = 29.0 bits (66), Expect = 0.82
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 40 LQIAVPS-RTDVKEYQDLKEEMDQLVGRING 69
L + VPS R D++ +DL EE V RI G
Sbjct: 442 LTVTVPSWRFDIEIEEDLVEE----VARIYG 468
>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmSD in Erwinia
amylovora has been shown to be involved in the
biosynthesis of amylovoran, the acidic exopolysaccharide
acting as a virulence factor. This enzyme may be
responsible for the formation of galactose alpha-1,6
linkages in amylovoran.
Length = 348
Score = 28.7 bits (65), Expect = 0.94
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPE 32
+L+V RL KG ++A+ + +KHP+
Sbjct: 181 ILAVGRLVPQKGFDLLIEAWAKIAKKHPD 209
>gnl|CDD|216258 pfam01037, AsnC_trans_reg, AsnC family. The AsnC family is a
family of similar bacterial transcription regulatory
proteins.
Length = 73
Score = 26.7 bits (60), Expect = 1.4
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 18 HRLKAFETLLEKHPEHLE--KVT-----LLQIAVPSRTDVKEYQDLKEEMDQLVGRING 69
H L AF L PE +E +VT LL++ D++ + + + + R+ G
Sbjct: 9 HDLDAFAEALAAIPEVVECYRVTGDYDYLLKVVAR---DMEALERF---LREKLRRLPG 61
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and
metabolism].
Length = 487
Score = 28.0 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKH 30
L V RL KGL L+A + LLE+
Sbjct: 296 LFGFVSRLTAQKGLDLLLEAIDELLEQG 323
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer
membrane].
Length = 381
Score = 28.0 bits (61), Expect = 1.9
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 20/106 (18%)
Query: 4 VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQL 63
VL V RLD KGL ++A L ++ P+ + L+ + + ++L++ +L
Sbjct: 202 VLYVGRLDPEKGLDLLIEAAAKLKKRGPD----IKLVIVGDGP----ERREELEKLAKKL 253
Query: 64 VGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDE 109
N +F + +ELA A V V P E
Sbjct: 254 GLEDNVKFLGY-----------VPDEELAELLASADV-FVLPSLSE 287
>gnl|CDD|212581 cd11708, DHR2_DOCK5, Dock Homology Region 2, a GEF domain, of Class
A Dedicator of Cytokinesis 5. Dock5 is an atypical
guanine nucleotide exchange factor (GEF) that lacks the
conventional Dbl homology (DH) domain. As a GEF, it
activates small GTPases by exchanging bound GDP for free
GTP. It functions upstream of Rac1 to regulate
osteoclast function. DOCK proteins are divided into four
classes (A-D) based on sequence similarity and domain
architecture; class A includes Dock1, 2 and 5. All DOCKs
contain two homology domains: the DHR-1 (Dock homology
region-1), also called CZH1 (CED-5, Dock180, and
MBC-zizimin homology 1), and DHR-2 (also called CZH2 or
Docker). The DHR-1 domain binds
phosphatidylinositol-3,4,5-triphosphate. This alignment
model represents the DHR-2 domain of Dock5, which
contains the catalytic GEF activity for Rac and/or
Cdc42. Class A DOCKs, like Dock5, are specific GEFs for
Rac and they contain an SH3 domain at the N-terminal
region and a PxxP motif at the C-terminus.
Length = 400
Score = 27.6 bits (61), Expect = 2.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 21 KAF--ETLLEKHPEHLEKVTLLQ 41
KAF E L++HPE EK+ LL+
Sbjct: 331 KAFFTEKYLQEHPEDQEKIELLK 353
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain. This domain is found
in phenylalanine-tRNA synthetase beta subunits.
Length = 68
Score = 25.9 bits (58), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 40 LQIAVPS-RTDVKEYQDLKEEMDQLVGRING 69
L++ VPS R D+ DL EE V RI G
Sbjct: 41 LEVTVPSYRFDILIEADLIEE----VARIYG 67
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
GT1 family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to
the B. pertussis lipopolysaccharide (LPS) core (band B),
generates band A LPS.
Length = 377
Score = 26.9 bits (60), Expect = 4.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEH 33
++L V RL KG+ + ++A LL+K P+
Sbjct: 204 VILFVGRLVPRKGIDYLIEALARLLKKRPDV 234
>gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent
methonine synthase, or MetE, C-terminal domain_like.
Many members have been characterized as
5-methyltetrahydropteroyltriglutamate-homocysteine
methyltransferases, EC:2.1.1.14, mostly from bacteria
and plants. This enzyme catalyses the last step in the
production of methionine by transferring a methyl group
from 5-methyltetrahydrofolate to L-homocysteine without
using an intermediate methyl carrier. The active enzyme
has a dual (beta-alpha)8-barrel structure, and this
model covers the C-terminal barrel, and a few
single-barrel sequences most similar to the C-terminal
barrel. It is assumed that the homologous N-terminal
barrel has evolved from the C-terminus via gene
duplication and has subsequently lost binding sites, and
it seems as if the two barrels forming the active enzyme
may sometimes reside on different polypeptides. The
C-terminal domain incorporates the Zinc ion, which binds
and activates homocysteine. Sidechains from both barrels
contribute to the binding of the folate substrate.
Length = 332
Score = 26.4 bits (59), Expect = 4.9
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 63 LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDE 109
L G + G T P+ S +R+ S++ELA +AL LR+E
Sbjct: 121 LKGILTGPVTIPSPSFVRFRGYYPSREELA-----MDLALA--LREE 160
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate
glycosyltransferase. Members of this protein family,
found exclusively in the Actinobacteria, are MshA, the
glycosyltransferase of mycothiol biosynthesis. Mycothiol
replaces glutathione in these species.
Length = 405
Score = 26.6 bits (59), Expect = 5.2
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 3 LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKE---YQDLKEE 59
+V V R+ K L+A LL++ P+ + ++ + PS + + +L E
Sbjct: 221 VVAFVGRIQPLKAPDVLLRAVAELLDRDPD--RNLRVIVVGGPSGSGLATPDALIELAAE 278
Query: 60 MDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNSF 114
+ + R+ RF P +EL YR AA + P ++ SF
Sbjct: 279 LG-IADRV--RFLPPR-----------PPEELVHVYR-AADVVAVP---SYNESF 315
>gnl|CDD|133432 cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4;
Phospho-beta-glucosidase. Some bacteria simultaneously
translocate and phosphorylate disaccharides via the
phosphoenolpyruvate-dependent phosphotransferase system
(PEP-PTS). After translocation, these
phospho-disaccharides may be hydrolyzed by the GH4
glycoside hydrolases such as the
phospho-beta-glucosidases. Other organisms (such as
archaea and Thermotoga maritima ) lack the PEP-PTS
system, but have several enzymes normally associated
with the PEP-PTS operon. The 6-phospho-beta-glucosidase
from Thermotoga maritima hydrolylzes cellobiose
6-phosphate (6P) into glucose-6P and glucose, in an NAD+
and Mn2+ dependent fashion. The Escherichia coli
6-phospho-beta-glucosidase (also called celF) hydrolyzes
a variety of phospho-beta-glucosides including
cellobiose-6P, salicin-6P, arbutin-6P, and
gentobiose-6P. Phospho-beta-glucosidases are part of the
NAD(P)-binding Rossmann fold superfamily, which includes
a wide variety of protein families including the
NAD(P)-binding domains of alcohol dehydrogenases,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 419
Score = 26.7 bits (60), Expect = 5.3
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 5 LSVDRLD-YTKGLVHRLKAFETL 26
L V L GL+ ++KA+E L
Sbjct: 353 LPVGPLPPAILGLIQQVKAYERL 375
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit,
non-spirochete bacterial. Every known example of the
phenylalanyl-tRNA synthetase, except the monomeric form
of mitochondrial, is an alpha 2 beta 2 heterotetramer.
The beta subunits break into two subfamilies that are
considerably different in sequence, length, and pattern
of gaps. This model represents the subfamily that
includes the beta subunit from Bacteria other than
spirochetes, as well as a chloroplast-encoded form from
Porphyra purpurea. The chloroplast-derived sequence is
considerably shorter at the amino end, however, so This
model was built in fragment mode [Protein synthesis,
tRNA aminoacylation].
Length = 797
Score = 26.5 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 40 LQIAVPS-RTDVKEYQDLKEEMDQLVGRING 69
++ VPS R D++ +DL EE + RI G
Sbjct: 445 WEVTVPSYRHDIEIEEDLIEE----IARIYG 471
>gnl|CDD|233813 TIGR02291, rimK_rel_E_lig, alpha-L-glutamate ligase-related
protein. Members of this protein family contain a
region of homology to the RimK family of
alpha-L-glutamate ligases (TIGR00768), various members
of which modify the Glu-Glu C-terminus of ribosomal
protein S6, or tetrahydromethanopterin, or a form of
coenzyme F420 derivative. Members of this family are
found so far in various Vibrio and Pseudomonas species
and some other gamma and beta Proteobacteria. The
function is unknown.
Length = 317
Score = 26.4 bits (58), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 14 KGLVHRLKAFETLLEKHPEH---LEKVTLLQ 41
GL+ RLK E LE E+ +E+V Q
Sbjct: 280 AGLLPRLKHIEARLETPAEYPKAIERVAYAQ 310
>gnl|CDD|235644 PRK05911, PRK05911, RNA polymerase sigma factor sigma-28; Reviewed.
Length = 257
Score = 26.5 bits (58), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 83 YGCISQDELASFYRDAAVALVTPLRDEWS 111
Y ISQ EL+ ++ A AL+ L +E+
Sbjct: 135 YLNISQQELSGWFSSARPALILSLNEEFP 163
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain. This domain is found
in phenylalanine-tRNA synthetase beta subunits.
Length = 70
Score = 24.9 bits (55), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 40 LQIAVPS-RTDVKEYQDLKEEMDQLVGRING 69
L++ VPS R D+ DL EE + R+ G
Sbjct: 43 LKVTVPSYRPDILHEVDLIEE----IARLYG 69
>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6;
Provisional.
Length = 222
Score = 26.3 bits (59), Expect = 6.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 42 IAVPSRTDVKEYQDLKEEMDQLVGRINGRFT 72
I VPS +E + LKE +D V + + T
Sbjct: 68 ILVPSIVLDEELELLKEALDLNVEVLPSKLT 98
>gnl|CDD|218278 pfam04816, DUF633, Family of unknown function (DUF633). This
family of proteins are uncharacterized have no known
function.
Length = 204
Score = 26.1 bits (58), Expect = 6.4
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 26 LLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQL 63
+K LEK+ + +PS + +L E+++ +
Sbjct: 165 FKKKWQRELEKLKKILSQIPSEQAKAKLSELDEKIEVI 202
>gnl|CDD|235206 PRK04031, PRK04031, DNA primase; Provisional.
Length = 408
Score = 26.3 bits (59), Expect = 6.9
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 41 QIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIR 80
+ P+ ++ + ++E + +L G + R NW+ I+
Sbjct: 302 EEKEPAPVPAEKEETVREHIKELKGTLEARLLDENWNVIK 341
>gnl|CDD|235351 PRK05137, tolB, translocation protein TolB; Provisional.
Length = 435
Score = 26.0 bits (58), Expect = 7.3
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 3/16 (18%)
Query: 66 RI---NGRFTTPNWSP 78
RI GR++TP WSP
Sbjct: 328 RISFGGGRYSTPVWSP 343
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 26.1 bits (57), Expect = 7.8
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 LVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQ 54
LVHR A +L K P+H+ K+T +A D KEY
Sbjct: 130 LVHRDLAARNVLVKTPQHV-KITDFGLAKLLGADEKEYH 167
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 26.2 bits (58), Expect = 8.0
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 14 KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTT 73
K L L+AF L K P+ ++ + + ++L + +L RF
Sbjct: 208 KNLERLLEAFARLPAKGPDP-------KLVIVGKRG-WLNEELLARLRELGLGDRVRFL- 258
Query: 74 PNWSPIRYIYGCISQDELASFYRDAAVALVTP 105
G +S +ELA+ YR A A V P
Sbjct: 259 ----------GYVSDEELAALYR-GARAFVFP 279
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein
LanM. Members of this family are known generally as
LanM, a multifunctional enzyme of lantibiotic
biosynthesis. This catalysis by LanM distinguishes the
type 2 lantibiotics, such as mersacidin, cinnamycin, and
lichenicidin, from LanBC-produced type 1 lantibiotics
such as nisin and subtilin. The N-terminal domain
contains regions associated with Ser and Thr
dehydration. The C-terminal region contains a pfam05147
domain, which catalyzes the formation of the lanthionine
bridge [Cellular processes, Toxin production and
resistance].
Length = 931
Score = 26.1 bits (58), Expect = 8.3
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 13/48 (27%)
Query: 62 QLVGRINGRFTTPNWSPIRYI----YG---------CISQDELASFYR 96
L+ +N + + + YG C S++E+ FY+
Sbjct: 180 DLLEWLNQKGLNLPLKTPKVLNRDDYGWMEFIEHEPCESEEEVERFYQ 227
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 25.7 bits (56), Expect = 9.2
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 19/112 (16%)
Query: 2 SLVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMD 61
+ + V RL KGL ++AF L E+ P + L+ D E + L+E +
Sbjct: 105 ADKVFVGRLAPEKGLDDLIEAFALLKERGP----DLKLVIAG-----DGPEREYLEELLA 155
Query: 62 QLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS 113
L+ F G ++ LA A V ++ LR+ +
Sbjct: 156 ALLLLDRVIFLG----------GLDPEELLALLLAAADVFVLPSLREGFGLV 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.394
Gapped
Lambda K H
0.267 0.0838 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,210,442
Number of extensions: 650373
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 67
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)