RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9724
         (140 letters)



>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase,
           transferase; HET: U2F; 2.0A {Escherichia coli} SCOP:
           c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
          Length = 482

 Score =  197 bits (504), Expect = 1e-62
 Identities = 47/106 (44%), Positives = 68/106 (64%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
            + SV+RLDY+KGL  R  A+E LLEK+P+H  K+   QIA  SR DV+ YQD++ +++ 
Sbjct: 257 NIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLEN 316

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
             GRING++    W+P+ Y+     +  L   +R + V LVTPLRD
Sbjct: 317 EAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRD 362


>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase;
           1.70A {Streptomyces hygroscopicus} PDB: 3t7d_A*
          Length = 496

 Score =  173 bits (440), Expect = 4e-53
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
           LV+   R D  K     ++AF  +L      LEK  +L    P+R  V    D    ++ 
Sbjct: 283 LVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVET 340

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
            V   N    +        I      +   + +R A + +     D
Sbjct: 341 AVAEANAELGS----DTVRIDNDNDVNHTIACFRRADLLIFNSTVD 382


>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
           alpha beta, substrate AS catalysis; 2.10A
           {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
          Length = 438

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPS--RTDVKEYQDLKEEM 60
           +V  V RL   KG    +KA   L ++ P+    + ++    PS        Y+ + EE+
Sbjct: 245 VVAFVGRLQPFKGPQVLIKAVAALFDRDPDR--NLRVIICGGPSGPNATPDTYRHMAEEL 302

Query: 61  DQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPL 106
             +  RI  RF                  EL + YR A +  V   
Sbjct: 303 G-VEKRI--RFL-----------DPRPPSELVAVYRAADIVAVPSF 334


>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
           {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
          Length = 499

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 17/111 (15%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
            +++  RLD  K     ++A+    E   +    +TL  I  P     +  Q+ KE + +
Sbjct: 264 AIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGK 323

Query: 63  LVGRI-----NGRFTTPNWSPIRYIYGCISQDELASFYR---DAAVALVTP 105
           ++  I      G+ +              SQ ELA  Y             
Sbjct: 324 IIELIDNNDCRGKVSMF---------PLNSQQELAGCYAYLASKGSVFALT 365


>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
           horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
          Length = 416

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
           ++  V R D  KG+   ++ +  + EK P     V LL + V +  D + +   ++ + +
Sbjct: 233 IITQVSRFDPWKGIFDVIEIYRKVKEKIPG----VQLLLVGVMAHDDPEGWIYFEKTLRK 288

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLR 107
           +    + +               +   E+ +F R + V L   +R
Sbjct: 289 IGEDYDVKV--------LTNLIGVHAREVNAFQRASDVILQMSIR 325


>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
           glycosyltransferase, rossmann fold, complex; HET: GDP;
           2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
          Length = 406

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 24/108 (22%)

Query: 3   LVLSVDRLDYT-KGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMD 61
            VL + R D   KG+   L A   L+ + P+    V +L +         +  +L+E+  
Sbjct: 210 TVLFLGRYDEPRKGMAVLLAALPKLVARFPD----VEILIVGRG------DEDELREQAG 259

Query: 62  QLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDE 109
            L G +  RF            G +     AS  R A V     L  E
Sbjct: 260 DLAGHL--RFL-----------GQVDDATKASAMRSADVYCAPHLGGE 294


>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
           donar complex rossmann fold, GT-B fold,
           glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
           {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
          Length = 816

 Score = 35.0 bits (80), Expect = 0.005
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 11/106 (10%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
           ++ ++ RLD  K L   ++ +                L +    R    +  + K EM +
Sbjct: 574 ILFTMARLDRVKNLSGLVEWYGKNTRLREL-----ANLVVVGGDRRKESKDNEEKAEMKK 628

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYR---DAAVALVTP 105
           +   I            R+I   + +      YR   D   A V P
Sbjct: 629 MYDLIEEY---KLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQP 671


>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
           mannosyltransferase...; GT-B fold,
           alpha-mannosyltransferase; HET: GDD; 2.00A
           {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
          Length = 394

 Score = 33.5 bits (77), Expect = 0.013
 Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 22/101 (21%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
           ++    RL   KG    +KA   ++   P+      LL +             L+     
Sbjct: 200 VIACNSRLVPRKGQDSLIKAMPQVIAARPD----AQLLIVGSGR-----YESTLRRLATD 250

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALV 103
           +   +  +F            G +   ++ +    A +  +
Sbjct: 251 VSQNV--KFL-----------GRLEYQDMINTLAAADIFAM 278


>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
           lipopolysaccharide biosynthesis, family GT-4,
           glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
           coli} SCOP: c.87.1.8 PDB: 2iv7_A*
          Length = 374

 Score = 31.9 bits (73), Expect = 0.051
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 22/106 (20%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
           L+L V      KG+   ++A  +L E         TLL +    +    +++ L E++  
Sbjct: 198 LLLQVGSDFGRKGVDRSIEALASLPESLRH----NTLLFVVGQDKPR--KFEALAEKLG- 250

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRD 108
           +   +   F +              +++++     A + L    ++
Sbjct: 251 VRSNV--HFFSG-------------RNDVSELMAAADLLLHPAYQE 281


>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
           genomics, PSI, protein struct initiative; 1.80A
           {Archaeoglobus fulgidus} SCOP: c.87.1.8
          Length = 177

 Score = 30.6 bits (70), Expect = 0.098
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 23/106 (21%)

Query: 4   VLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQL 63
            LSV+R+   K +  +L+ F+         L+   L  +   S       +    ++ ++
Sbjct: 26  WLSVNRIYPEKRIELQLEVFK--------KLQDEKLYIVGWFS--KGDHAERYARKIMKI 75

Query: 64  VGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDE 109
                      N   ++++ G +S++EL   Y      L+   +DE
Sbjct: 76  AP--------DN---VKFL-GSVSEEELIDLYS-RCKGLLCTAKDE 108


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 30.5 bits (68), Expect = 0.12
 Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 42  IAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIY 83
           I +P    +    +  +  +  V  +N + T   W  I  +Y
Sbjct: 176 IELPPNEILFSENNDMDNNNDGVDELNKKCT--FWDAISKLY 215


>2cjj_A Radialis; plant development, DNA-binding protein, MYB
          transcription FA DNA-binding, nuclear protein, floral
          asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
          Length = 93

 Score = 29.1 bits (65), Expect = 0.20
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 21 KAFETLLEKHPEH----LEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRI-NGRFTTPN 75
          KAFE  L  + +        V     AV  RT  +E +   E + + +  I +G+   PN
Sbjct: 17 KAFERALAVYDKDTPDRWANV---ARAVEGRT-PEEVKKHYEILVEDIKYIESGKVPFPN 72


>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
           carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
          Length = 394

 Score = 30.0 bits (68), Expect = 0.23
 Identities = 4/32 (12%), Positives = 14/32 (43%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHL 34
           +++ +      K +   ++AF  ++ +    L
Sbjct: 213 ILIHISNFRKVKRVQDVVQAFAKIVTEVDAKL 244


>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
           stearothermophilus} PDB: 2x0f_A* 2x0e_A*
          Length = 413

 Score = 29.4 bits (65), Expect = 0.35
 Identities = 5/49 (10%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWS 111
            VG  +          +    G ++ ++ A   + +++ +   +    S
Sbjct: 281 SVGEKHKDIALGKGIHLNS-LGKLTLEDYADLLKRSSIGISLMISPHPS 328


>3tmg_A Glycine betaine, L-proline ABC transporter,
           glycine/betaine/L-proline-binding protein...; ssgcid,
           structural genomics; 1.90A {Borrelia burgdorferi}
          Length = 280

 Score = 29.0 bits (65), Expect = 0.49
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 42  IAVPSRTDVKEYQDLKEEMDQLVGRING 69
             VPS   +    +LK + D+   ++ G
Sbjct: 102 FVVPSYVPISSISELKGKGDKFKNKMIG 129


>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional
           regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis}
           SCOP: a.4.5.32 d.58.4.2
          Length = 144

 Score = 27.5 bits (62), Expect = 0.96
 Identities = 5/46 (10%), Positives = 17/46 (36%), Gaps = 10/46 (21%)

Query: 18  HRLKAFETLLEKHPEHLE--KVT-----LLQIAVPSRTDVKEYQDL 56
              + F++ ++  P      ++      +L+I       ++  +D 
Sbjct: 76  ADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAE---SLEAVEDF 118


>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor
           CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
          Length = 347

 Score = 26.5 bits (59), Expect = 2.8
 Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 81  YIYGCISQDELASFYRDAAVA 101
           Y+ GCI+ D      ++AA  
Sbjct: 88  YV-GCIADDRYGKVLKEAAEH 107


>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
           conformation, signaling protein,transferase; HET: ACP;
           1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
           2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
           1lik_A*
          Length = 383

 Score = 26.6 bits (59), Expect = 3.0
 Identities = 4/21 (19%), Positives = 7/21 (33%), Gaps = 1/21 (4%)

Query: 81  YIYGCISQDELASFYRDAAVA 101
           Y+ G I  D      ++    
Sbjct: 110 YM-GAIGDDPRGQVLKELCDK 129


>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
           tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
           gambiae}
          Length = 365

 Score = 26.6 bits (59), Expect = 3.4
 Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)

Query: 81  YIYGCISQDELASFYRDAAVA 101
           +  GC+ QDE A    + A +
Sbjct: 102 FF-GCVGQDEYARILEERATS 121


>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase;
           HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB:
           2i6a_A* 2i6b_A*
          Length = 345

 Score = 26.5 bits (59), Expect = 3.5
 Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 1/21 (4%)

Query: 81  YIYGCISQDELASFYRDAAVA 101
           +  GCI  D+     +  A  
Sbjct: 86  FF-GCIGIDKFGEILKRKAAE 105


>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center
           for structural genomics, JCSG, protein structure INI
           PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}
          Length = 496

 Score = 26.5 bits (58), Expect = 4.2
 Identities = 9/60 (15%), Positives = 23/60 (38%)

Query: 54  QDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS 113
             L+  +++++ R+N       +    Y+         + FY    ++   P+   + NS
Sbjct: 21  TQLELLLERIIDRVNVNLRHQKFDVGDYVRRQTPHLHYSKFYAFYGLSADDPVHFHFKNS 80


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 5.3
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 55/162 (33%)

Query: 7   VDRLD-----YTKGLVHRLKAFET----LLEKHPEHLEKVTL----------LQIAVPSR 47
            DRL      + K  V RL+ +      LLE  P   + V +          + + V   
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLS 173

Query: 48  TDVKEY----------------QDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCIS-QDE 90
             V+                  + + E + +L+ +I+  +T+ +           S Q E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 91  LASF-----YRDAAVALVTPLRDEWS----NSFSRSGNFRIK 123
           L        Y +    LV  L +  +    N+F    N   K
Sbjct: 234 LRRLLKSKPYENC--LLV--LLNVQNAKAWNAF----NLSCK 267



 Score = 26.0 bits (56), Expect = 6.6
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 19  RLKAFETLLEKHPEHL---EKVTLLQIA 43
            + A    L K  E+L   +   LL+IA
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIA 571


>2cyy_A Putative HTH-type transcriptional regulator PH151; structural
           genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE
           GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32
           d.58.4.2
          Length = 151

 Score = 25.2 bits (56), Expect = 6.0
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 18  HRLKAFETLLEKHPEHLE--KVT-----LLQIAVPSRTDVKEYQDLKEEMDQLVG 65
            +     + L K+PE +E  + T     +++I      + +E  +  + +  + G
Sbjct: 78  GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTK---NSEELNNFLDLIGSIPG 129


>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ);
          rossmann fold, glycosyltransferase, transferase; 1.50A
          {Helicobacter pylori}
          Length = 166

 Score = 25.2 bits (56), Expect = 6.9
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 4  VLSVDRLDYTKGLVHRLKAFETLLEKHPEHL 34
          +  V R    K     +KA      K    L
Sbjct: 5  IAMVGRYSNEKNQSVLIKAVALSKYKQDIVL 35


>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP,
           A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus}
           PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A*
           1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A*
           1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A*
           ...
          Length = 267

 Score = 25.6 bits (57), Expect = 7.0
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 9   RLDYTKGLVHRLKAFETLLEKHPEHLE 35
            L   +G++  +     +  K+ E + 
Sbjct: 239 PLSQLEGIIEAILEIREVASKYYETIP 265


>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding,
           transcriptional regulatory protein, archaeal; HET: DNA;
           2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
           PDB: 1ri7_A* 2zny_A* 2znz_A*
          Length = 171

 Score = 25.3 bits (56), Expect = 7.5
 Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 10/55 (18%)

Query: 18  HRLKAFETLLEKHPEHLE--KVT-----LLQIAVPSRTDVKEYQDLKEEMDQLVG 65
            +     + L K+PE +E  + T     +++I      + +E  +  + +  + G
Sbjct: 98  GKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTK---NSEELNNFLDLIGSIPG 149


>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA
           synthesis, NUCL binding, magnesium; HET: DNA DOC TTD
           DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A*
           3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A*
           1jih_A*
          Length = 520

 Score = 25.6 bits (55), Expect = 8.0
 Identities = 4/42 (9%), Positives = 16/42 (38%)

Query: 41  QIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYI 82
              V  +    +  +L +   + V  ++ +    ++ P+  +
Sbjct: 465 SGPVAYKGINFQSHELLKVGIKFVTDLDIKGKNKSYYPLTKL 506


>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
           nucleotide-binding, transferase; HET: AP5; 2.00A
           {Marinibacillus marinus}
          Length = 216

 Score = 24.8 bits (55), Expect = 9.9
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 16/55 (29%)

Query: 21  KAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPN 75
            A ++LL    + L+ V  L I V                ++L+ R+ GR+    
Sbjct: 94  DALDSLLTDLGKKLDYV--LNIKVEQ--------------EELMKRLTGRWICKT 132


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,139,616
Number of extensions: 120852
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 50
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)