RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9724
         (140 letters)



>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
           {Escherichia coli [TaxId: 562]}
          Length = 456

 Score = 86.1 bits (212), Expect = 3e-21
 Identities = 47/111 (42%), Positives = 69/111 (62%)

Query: 3   LVLSVDRLDYTKGLVHRLKAFETLLEKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQ 62
            + SV+RLDY+KGL  R  A+E LLEK+P+H  K+   QIA  SR DV+ YQD++ +++ 
Sbjct: 256 NIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLEN 315

Query: 63  LVGRINGRFTTPNWSPIRYIYGCISQDELASFYRDAAVALVTPLRDEWSNS 113
             GRING++    W+P+ Y+     +  L   +R + V LVTPLRD  +  
Sbjct: 316 EAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLV 366


>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 96

 Score = 25.0 bits (54), Expect = 2.2
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 117 SGNFRIKSAPSGNRTHDLALTKP 139
           +G F I   P+    + L +++ 
Sbjct: 42  NGYFEITGVPANASGYTLKISRA 64


>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ
          {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 166

 Score = 24.8 bits (52), Expect = 4.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 4  VLSVDRLDYTKGLVHRLKAFETLLEKH 30
           LSV+R+   K +  +L+ F+ L ++ 
Sbjct: 15 WLSVNRIYPEKRIELQLEVFKKLQDEK 41


>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
          symbiosum [TaxId: 1512]}
          Length = 194

 Score = 24.5 bits (53), Expect = 4.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 24 ETLLEKHPEHLEKVTLLQIAVPSRT 48
            +++ HPE+ E   L ++ +P R 
Sbjct: 33 GPVVDAHPEYEEVALLERMVIPERV 57


>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 111

 Score = 23.9 bits (52), Expect = 5.9
 Identities = 4/47 (8%), Positives = 14/47 (29%)

Query: 28  EKHPEHLEKVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTP 74
                   K+      +   + + E+   ++++   +  I      P
Sbjct: 60  MPDASFQAKMEGFGKQIQGNSLLSEFFTKQQQLAIYLSDIEKIVFEP 106


>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
           synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
           29292]}
          Length = 107

 Score = 23.7 bits (51), Expect = 6.3
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 28  EKHPEHLE-KVTLLQIAVPSRTDVKEYQDLKEEMDQLVGRINGRFTTPNWSPIRYIYGCI 86
           + HP   +  V  + +    RT V   +   +  + L   +            + + G  
Sbjct: 22  KDHPNADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYVVVVANLE----PKKLRGIG 77

Query: 87  SQDELASFYRDAAVALVTPLRD 108
           SQ  L +      VAL+ P ++
Sbjct: 78  SQGMLLAADDGERVALLMPDKE 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 518,746
Number of extensions: 23273
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.3 bits)