BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9726
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 300 bits (769), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 157/325 (48%), Positives = 206/325 (63%), Gaps = 8/325 (2%)
Query: 61 SVQEHQSVPE---GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMS 117
+ Q +++P+ GR TLIPGDGVG E+ SV+ +F+A N+P+D+E + +
Sbjct: 3 AAQAERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTD--HK 60
Query: 118 APLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
+ +S+ RN I LKG+ TP TG +LN+ LRK LD+YANV KSL GVK
Sbjct: 61 EGVYEAVESLKRNKIGLKGLWHTP-ADQTGH-GSLNVALRKQLDIYANVALFKSLKGVKT 118
Query: 178 RHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKV 237
R ++D ++IRE TEGE+S LEHE VPGVVE LK++T K+ RIA+FAFD+A K NRK V
Sbjct: 119 RIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSV 178
Query: 238 TAVHKANIMKLGDGLFLNSCKEMA-KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNL 296
TAVHKANIMKLGDGLF N E+ K YP I +IVDN +MQ V+ PHQFDV+V P++
Sbjct: 179 TAVHKANIMKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSM 238
Query: 297 YGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 356
YG I+ N + + VFEPG+RH + G+NVANPTAM+L ST M
Sbjct: 239 YGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLM 298
Query: 357 LSHVNLQYYGDMIRNAVNRVLKAGK 381
L+H+ L Y I AV+ + GK
Sbjct: 299 LNHLGLNEYATRISKAVHETIAEGK 323
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 288 bits (736), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 153/325 (47%), Positives = 200/325 (61%), Gaps = 8/325 (2%)
Query: 61 SVQEHQSVPE---GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMS 117
+ Q +++P+ GR TLIPGDGVG E+ SV+ +F+A N+P+D+E + +
Sbjct: 3 AAQAERTLPKKYGGRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTD--HK 60
Query: 118 APLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
+ +S+ RN I LKG+ TP TG +LN+ LRK LD+YANV KSL GVK
Sbjct: 61 EGVYEAVESLKRNKIGLKGLWHTP-ADQTGH-GSLNVALRKQLDIYANVALFKSLKGVKT 118
Query: 178 RHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKV 237
R ++D ++IRE TEGE+S LEHE VPGVVE LK+ T K+ RIA+FAFD+A K NRK V
Sbjct: 119 RIPDIDLIVIRENTEGEFSGLEHESVPGVVESLKVXTRPKTERIARFAFDFAKKYNRKSV 178
Query: 238 TAVHKANIMKLGDGLFLNSCKEMA-KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNL 296
TAVHKANI KLGDGLF N E+ K YP I +IVDN + Q V+ PHQFDV+V P+
Sbjct: 179 TAVHKANIXKLGDGLFRNIITEIGQKEYPDIDVSSIIVDNASXQAVAKPHQFDVLVTPSX 238
Query: 297 YGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 356
YG I+ N + + VFEPG+RH + G+NVANPTA +L ST
Sbjct: 239 YGTILGNIGAALIGGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAXILSSTLX 298
Query: 357 LSHVNLQYYGDMIRNAVNRVLKAGK 381
L+H+ L Y I AV+ + GK
Sbjct: 299 LNHLGLNEYATRISKAVHETIAEGK 323
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 227 bits (579), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 187/318 (58%), Gaps = 16/318 (5%)
Query: 71 GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVAD----S 126
G+ + I GDG+GPE+ SV+++F AANVP+++E +V+P L T+ D S
Sbjct: 20 GKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWES---CDVSPIFVNGLTTIPDPAVQS 76
Query: 127 IARNGICLKGVLSTP-DYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCV 185
I +N + LKG L+TP H ++LN+ LRK L+ANV KS+ G K + NVD V
Sbjct: 77 ITKNLVALKGPLATPIGKGH----RSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLV 132
Query: 186 IIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANI 245
+IRE TEGEYS +EH PGVV+ +K++T + S R+ ++AF+YA R +V VHK+ I
Sbjct: 133 LIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTI 192
Query: 246 MKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD--VMVMPNLYGNIV-D 302
+L DGLF+N KE++K YP + E ++DN +++V+NP + V V PNLYG+I+ D
Sbjct: 193 QRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSD 252
Query: 303 NXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNL 362
+ +FE + + G++ ANPTA+LL S ML+H+ L
Sbjct: 253 LNSGLSAGSLGLTPSANIGHKISIFE-AVHGSAPDIAGQDKANPTALLLSSVMMLNHMGL 311
Query: 363 QYYGDMIRNAVNRVLKAG 380
+ D I+NAV + +G
Sbjct: 312 TNHADQIQNAVLSTIASG 329
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 185/318 (58%), Gaps = 16/318 (5%)
Query: 71 GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVAD----S 126
G+ + I GDG+GPE+ SV+++F AANVP+++E +V+P L T+ D S
Sbjct: 20 GKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWES---CDVSPIFVNGLTTIPDPAVQS 76
Query: 127 IARNGICLKGVLSTP-DYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCV 185
I +N + LKG L+TP H ++LN+ LRK L+ANV KS+ G K + NVD V
Sbjct: 77 ITKNLVALKGPLATPIGKGH----RSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLV 132
Query: 186 IIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANI 245
+IRE TEGEYS +EH PGVV+ +K++T + S R+ ++AF+YA R +V VHK+ I
Sbjct: 133 LIRENTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTI 192
Query: 246 MKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD--VMVMPNLYGNIV-D 302
+L DGLF+N KE++K YP + E ++DN +++V+NP + V V PNLYG+I+ D
Sbjct: 193 QRLADGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSD 252
Query: 303 NXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNL 362
+ +FE + + G++ ANPTA+LL S L+H L
Sbjct: 253 LNSGLSAGSLGLTPSANIGHKISIFE-AVHGSAPDIAGQDKANPTALLLSSVXXLNHXGL 311
Query: 363 QYYGDMIRNAVNRVLKAG 380
+ D I+NAV + +G
Sbjct: 312 TNHADQIQNAVLSTIASG 329
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/323 (34%), Positives = 173/323 (53%), Gaps = 21/323 (6%)
Query: 70 EGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTM-------SAPLET 122
+GR T+IPGDG+GPE V + +V +AA P+ +E E ++ P ET
Sbjct: 17 DGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYE---VREAGASVFRRGIASGVPQET 73
Query: 123 VADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSN- 181
+ +SI + + LKG L TP GE ++ N+ LRK + YANV V+ P V ++
Sbjct: 74 I-ESIRKTRVVLKGPLETP--VGYGE-KSANVTLRKLFETYANVRPVREFPNVPTPYAGR 129
Query: 182 -VDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAV 240
+D V++RE E Y+ +EH P V + LK+++ + S +I +FAF+ A RKKV
Sbjct: 130 GIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCA 189
Query: 241 HKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNI 300
K+NIMKL +G + +++A+ YP I+ +IVDN Q+V P QF+V+V N+ G+I
Sbjct: 190 TKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDI 249
Query: 301 VDNXXXXXXXXXXXXXXXXWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLS 358
+ + E +FE G+ Y+ GKNV NPTA+LL + ML
Sbjct: 250 LSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYA---GKNVINPTAVLLSAVMMLR 306
Query: 359 HVNLQYYGDMIRNAVNRVLKAGK 381
++ D+I NA+ L+ G+
Sbjct: 307 YLEEFATADLIENALLYTLEEGR 329
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 150/295 (50%), Gaps = 31/295 (10%)
Query: 75 CTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVA-----DSIAR 129
LI GDG+GPE+V + + +++N S P+E + ++AR
Sbjct: 4 VALIQGDGIGPEIVSKSKRIL--------------AKINELYSLPIEYIEVEAGDRALAR 49
Query: 130 NGICL-KGVLSTPDYSH------TGE-LQTLNMKLRKALDLYANVVHVKSLPGVKVRHSN 181
G L K L D + GE + +KLR+ D+YAN+ KS+PG+ ++ N
Sbjct: 50 YGEALPKDSLKIIDKADIILKGPVGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGN 109
Query: 182 VDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVH 241
VD +I+RE TE Y EH GV +KI+T S RIAK ++A + RKKVT VH
Sbjct: 110 VDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFALR-RRKKVTCVH 168
Query: 242 KANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIV 301
KAN+M++ DGLF +C+ + K K+++ +M VD +V NP FDV+V N+YG+I+
Sbjct: 169 KANVMRITDGLFAEACRSVLK--GKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDIL 226
Query: 302 DNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 356
+ + +FEP + A GKN+ NPTA LL + M
Sbjct: 227 SDEASQIAGSLGIAPSANIGDKKALFEPVHGAAFDIA-GKNIGNPTAFLLSVSMM 280
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 8/310 (2%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDF---EPFFFSEVNPTMSAPLETVADSIARN 130
+ LI GDG+G E++ + + V +A +P++F E + + S P ETV + I
Sbjct: 4 RICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETV-EKILSC 62
Query: 131 GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQ 190
L G ++P G + LR+ LDLYANV KS P V VD VI+RE
Sbjct: 63 HATLFGAATSPTRKVPGFFGAIRY-LRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVREN 120
Query: 191 TEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGD 250
TEG Y E + V +++ + S RI + A A RK + HKAN++ L
Sbjct: 121 TEGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQ 179
Query: 251 GLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXX 310
GLFL++ KE+AK +P + + +IVDNC MQ+V P +FDV+V NL G+I+ +
Sbjct: 180 GLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 239
Query: 311 XXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIR 370
VFEP + + GK +ANPTA +L + ML ++ + +
Sbjct: 240 GLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVE 298
Query: 371 NAVNRVLKAG 380
AV+ VL+ G
Sbjct: 299 KAVDLVLERG 308
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 8/310 (2%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDF---EPFFFSEVNPTMSAPLETVADSIARN 130
+ LI GDG+G E++ + + V +A +P++F E + + S P ETV + I
Sbjct: 3 RICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETV-EKILSC 61
Query: 131 GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQ 190
L G ++P G + LR+ LDLYANV KS P V VD VI+RE
Sbjct: 62 HATLFGAATSPTRKVPGFFGAIRY-LRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVREN 119
Query: 191 TEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGD 250
TEG Y E + V +++ + S RI + A A RK + HKAN++ L
Sbjct: 120 TEGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQ 178
Query: 251 GLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXX 310
GLFL++ KE+AK +P + + +IVDNC MQ+V P +FDV+V NL G+I+ +
Sbjct: 179 GLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 238
Query: 311 XXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIR 370
VFEP + + GK +ANPTA +L + ML ++ + +
Sbjct: 239 GLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVE 297
Query: 371 NAVNRVLKAG 380
AV+ VL+ G
Sbjct: 298 KAVDLVLERG 307
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 155/310 (50%), Gaps = 8/310 (2%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDF---EPFFFSEVNPTMSAPLETVADSIARN 130
+ LI GDG+G E++ + + V +A +P++F E + + S P ETV ++ +
Sbjct: 4 RICLIEGDGIGYEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVVKILSCH 63
Query: 131 GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQ 190
L G + P G + M LR+ LDLYANV KS P V VD VI+RE
Sbjct: 64 A-TLFGAATIPTRKVPGFFGAI-MALRRRLDLYANVRPAKSRP-VPGSRPGVDLVIVREN 120
Query: 191 TEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGD 250
TEG Y E + V +++ + S RI + A A RK + HKAN++ L
Sbjct: 121 TEGLYVEQERRYL-DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQ 179
Query: 251 GLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXX 310
GLFL++ KE+AK +P + + +IVDNC Q+V P ++DV+V NL G+I+ +
Sbjct: 180 GLFLDTVKEVAKDFPLVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMG 239
Query: 311 XXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIR 370
VFEP + + GK +ANPTA +L + ML ++ + +
Sbjct: 240 GLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKRVE 298
Query: 371 NAVNRVLKAG 380
AV+ VL+ G
Sbjct: 299 KAVDLVLERG 308
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 161/332 (48%), Gaps = 28/332 (8%)
Query: 72 RTKCTLIPGDGVGPELVYSVQEVFKAA--NVPVDFEPFFFSEVNPTM----SAPL-ETVA 124
+ K ++PGDG+GPE++ + EV KA +FE F + + PL E
Sbjct: 23 KKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFE-FEYGLIGGAAIDEAGTPLPEETL 81
Query: 125 DSIARNGICLKGVLSTPDYSHT-GELQTLN--MKLRKALDLYANVVHVK-------SLPG 174
D + L G + P + EL+ + +RK LDL+AN+ VK + P
Sbjct: 82 DVCRGSDAILLGAVGGPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPL 141
Query: 175 VKVRHSNVDCVIIREQTEGEY----SALEHECVPGVVECLKIVTAEKSRRIAKFAFDYAT 230
K VD VI+RE T G Y S E V+ L + T E+ RI + AF+ A
Sbjct: 142 KKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL-LYTREEIERIIRKAFELAL 200
Query: 231 KNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDV 290
+KKVT+V KAN+++ L+ +E+AK YP ++ E M+VDN MQ++ NP QFDV
Sbjct: 201 -TRKKKVTSVDKANVLE-SSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDV 258
Query: 291 MVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV-VFEPGARHTYSEAVGKNVANPTAM 349
+V N++G+I+ + S + + ++EP + + GK +ANP A
Sbjct: 259 IVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEP-VHGSAPDIAGKGIANPLAT 317
Query: 350 LLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+L + ML + L+ I AV +VL G
Sbjct: 318 ILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG 349
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 152/338 (44%), Gaps = 34/338 (10%)
Query: 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVP---------VDFEPFFFSEVNPTMSAPLET 122
R LIP DG+G E+V + + + + N+P +D + + + + P T
Sbjct: 10 RIVLGLIPADGIGKEVVPAARRLME--NLPAKHKLKFDFIDLDAGWGTFERTGKALPERT 67
Query: 123 VADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNV 182
V L G + +P + G + + LRK + LYANV VKSL G K + V
Sbjct: 68 VERLKTECNAALFGAVQSPTHKVAGYSSPI-VALRKKMGLYANVRPVKSLDGAKGKP--V 124
Query: 183 DCVIIREQTEGEYSALEH--ECVPG--VVECLKIVTAEKSRRIAKFAFDYATKNNRKK-- 236
D VI+RE TE Y E + PG V E ++ ++ E S +I K AF+ A + +
Sbjct: 125 DLVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRES 184
Query: 237 ----------VTAVHKANIMKLGDGLFLNSCKEMAKL---YPKIQFEQMIVDNCTMQIVS 283
VT +HK+N+M + DGLF SC+ L Y I ++ IVD+ ++
Sbjct: 185 GTYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFR 244
Query: 284 NPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNV 343
P FDV+V PNLYG+I+ + V+ EP + + G+ +
Sbjct: 245 EPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEP-VHGSAPDIAGRGI 303
Query: 344 ANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381
ANP A ML + Q I AV++VL GK
Sbjct: 304 ANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGK 341
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 158/344 (45%), Gaps = 38/344 (11%)
Query: 68 VPEGRTKCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEVNPTMS----AP 119
+P + IPGDG+G E++ V +AA + ++F+ F ++ + + P
Sbjct: 1 MPAHSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMP 60
Query: 120 LETVADSIARNGICLKGVLSTPDY--SHTGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
+ A+ + + G + PD H +L +K R+ D Y N+ V+ PGV
Sbjct: 61 -DDWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSL-LKFRREFDQYVNIRPVRLFPGVPC 118
Query: 178 RHSN-----VDCVIIREQTEGEYSAL--------EHECVPGVVECLKIVTAEKSRRIAKF 224
+N +D V++RE TEGEYS+L E+E V + E I T RI K+
Sbjct: 119 ALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIV--IQES--IFTRRGVDRILKY 174
Query: 225 AFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSN 284
AFD A K RK VT+ K+N M + + + MA YP + +++ +D + V
Sbjct: 175 AFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQ 234
Query: 285 PHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPE---CVVFEPGARHTYSEAVGK 341
P +FDV+V NL+G+I+ + +PE +FEP + + GK
Sbjct: 235 PERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEP-VHGSAPDIFGK 293
Query: 342 NVANPTAMLLCSTKMLSHVN-----LQYYGDMIRNAVNRVLKAG 380
N+ANP AM+ ML + Q D + NA+ RV+ G
Sbjct: 294 NIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADG 337
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 157/355 (44%), Gaps = 62/355 (17%)
Query: 80 GDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPL------ETVADSIARNGIC 133
GDG+G ++V + V AA + E +F + L + ++I +
Sbjct: 35 GDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVA 94
Query: 134 LKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRH-SNVDCVIIREQ 190
LKG L+TP G ++LN+ +R+ LDLYANV V L GV ++H V+ VI RE
Sbjct: 95 LKGPLTTP---VGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFREN 151
Query: 191 TEGEYSALEHECVPGVVECLKIVTAEK----------------------SRRIAKFAFDY 228
TE Y+ +E G E LK++ K ++R+ + A Y
Sbjct: 152 TEDVYAGIEWPR--GSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVRMAIRY 209
Query: 229 ATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------LYP---------KI 267
A +NNRK VT VHK NIMK +G F + E+AK L+ KI
Sbjct: 210 AIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKI 269
Query: 268 QFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVF 327
+ I DN QI++ ++DV+ +PNL G+ + + VF
Sbjct: 270 VVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGDGIGVF 329
Query: 328 EP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380
EP G+ Y+ G+N NPTA +L M ++ + +MI+ AV + +G
Sbjct: 330 EPVHGSAPKYA---GQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSG 381
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 155/328 (47%), Gaps = 36/328 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGELQTLN--MKLRKALDLYANVVHVKSLPGVKVRHS-- 180
G+ L G + P + TG ++ + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWG-TGSVRPEQGLLSLRKSQDLFANLRPAKVFPGLE-RLSPL 116
Query: 181 ------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYAT 230
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 117 KEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFE-AA 171
Query: 231 KNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDV 290
+ RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FDV
Sbjct: 172 RKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDV 230
Query: 291 MVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAML 350
+V N++G+I+ + VFEP + + GK +ANPTA +
Sbjct: 231 VVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAI 289
Query: 351 LCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
L + ML H L + +AV + L
Sbjct: 290 LSAAMMLEHAFGLVELARKVEDAVAKAL 317
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 154/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF++A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFEFA 173
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 174 RKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFELA 173
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 174 RKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFE-A 172
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
+ RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 173 ARKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAAAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFELA 173
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 174 RKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFELA 173
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 174 RKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFELA 173
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 174 RKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 5 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 61
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 62 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 120
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 121 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFE-A 175
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
+ RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 176 ARKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 234
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 235 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 293
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 294 ILSAAMMLEHAFGLVELARKVEDAVAKAL 322
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFE-A 172
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
+ RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 173 ARKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKISPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFE-A 172
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
+ RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 173 ARKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFEVA 173
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 174 RKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 153/329 (46%), Gaps = 36/329 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHTGEL---QTLNMKLRKALDLYANVVHVKSLPGVKVRHS- 180
G+ L G + P + +T + LRK+ DL+AN+ K PG++ R S
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLE-RLSP 117
Query: 181 -------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYA 229
VD +I+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 118 LKEEIARGVDVLIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFEGA 173
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FD
Sbjct: 174 RKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFD 231
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V+V N++G+I+ + VFEP + + GK +ANPTA
Sbjct: 232 VVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAA 290
Query: 350 LLCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
+L + ML H L + +AV + L
Sbjct: 291 ILSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 152/328 (46%), Gaps = 34/328 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-EVNPTMSAPLETVADSI---AR 129
K ++PGDG+GPE+ + +V +A + + E + EV P A ++ + R
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALD---EAEGLGLAYEVFPFGGAAIDAFGEPFPEPTR 58
Query: 130 NGI-----CLKGVLSTPDYSHT-GELQTLN--MKLRKALDLYANVVHVKSL-------PG 174
G+ L G + P + EL+ + +RK LDL+AN+ VK P
Sbjct: 59 KGVEEAEAVLLGSVGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPL 118
Query: 175 VKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSR----RIAKFAFDYAT 230
K NVD VI+RE T G Y G+ E T S+ R+A+ AF+ A
Sbjct: 119 KKEYIDNVDFVIVRELTGGIYFGEPR----GMSEAEAWNTERYSKPEVERVARVAFE-AA 173
Query: 231 KNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDV 290
+ RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P +FDV
Sbjct: 174 RKRRKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDV 232
Query: 291 MVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAML 350
+V N++G+I+ + VFEP + + GK +ANPTA +
Sbjct: 233 VVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEP-VHGSAPDIAGKGIANPTAAI 291
Query: 351 LCSTKMLSHV-NLQYYGDMIRNAVNRVL 377
L + ML H L + +AV + L
Sbjct: 292 LSAAMMLEHAFGLVELARKVEDAVAKAL 319
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 155/330 (46%), Gaps = 24/330 (7%)
Query: 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFF------FSEVNPTMSAPLETVAD 125
+ K ++PGDG+GPE++ + V K E F + ++ + E D
Sbjct: 2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLD 61
Query: 126 SIARNGICLKGVLSTPDYSHT-GELQTLN--MKLRKALDLYANVVHVKSL-------PGV 175
R+ L G + P + H L+ + LRK + L+AN+ VK+ P
Sbjct: 62 ICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK 121
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECV-PGVVECLKIV--TAEKSRRIAKFAFDYATKN 232
+ R NVD VI+RE T G Y E PG E + + T E+ RI + AF A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLA-QI 180
Query: 233 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMV 292
RKK+ +V KAN+++ ++ +E AK YP ++ M+VD+ +MQ+++NP QFDV+V
Sbjct: 181 RRKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIV 239
Query: 293 MPNLYGNIV-DNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLL 351
N++G+I+ D S ++EP + + G+ ANP +L
Sbjct: 240 TENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEP-VHGSAPDIAGQGKANPLGTVL 298
Query: 352 CSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+ ML + L+ I AV+ VL+ G
Sbjct: 299 SAALMLRYSFGLEKEAAAIEKAVDDVLQDG 328
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 155/330 (46%), Gaps = 24/330 (7%)
Query: 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFF------FSEVNPTMSAPLETVAD 125
+ K ++PGDG+GPE++ + V K E F + ++ + E D
Sbjct: 2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLD 61
Query: 126 SIARNGICLKGVLSTPDYSHT-GELQTLN--MKLRKALDLYANVVHVKSL-------PGV 175
R+ L G + P + H L+ + LRK + L+AN+ VK+ P
Sbjct: 62 ICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK 121
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECV-PGVVECLKIV--TAEKSRRIAKFAFDYATKN 232
+ R NVD VI+RE T G Y E PG E + + T E+ RI + AF A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLA-QI 180
Query: 233 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMV 292
RKK+ +V KAN+++ ++ +E AK YP ++ M+VD+ +MQ+++NP QFDV+V
Sbjct: 181 RRKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIV 239
Query: 293 MPNLYGNIV-DNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLL 351
N++G+I+ D S ++EP + + G+ ANP +L
Sbjct: 240 TENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEP-VHGSAPDIAGQGKANPLGTVL 298
Query: 352 CSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+ ML + L+ I AV+ VL+ G
Sbjct: 299 SAALMLRYSFGLEKEAAAIEKAVDDVLQDG 328
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 154/330 (46%), Gaps = 24/330 (7%)
Query: 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFF------FSEVNPTMSAPLETVAD 125
+ K ++PGDG+GPE++ + V K E F + ++ + E D
Sbjct: 2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLD 61
Query: 126 SIARNGICLKGVLSTPDYSHT-GELQTLN--MKLRKALDLYANVVHVKSL-------PGV 175
R+ L G + P + H L+ + LRK + L+AN+ VK+ P
Sbjct: 62 ICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK 121
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECV-PGVVECLKIV--TAEKSRRIAKFAFDYATKN 232
+ R NVD VI+RE T G Y E PG E + + T E+ RI + AF A +
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLA-QI 180
Query: 233 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMV 292
RKK+ +V KAN+++ ++ +E AK YP ++ M+VD+ MQ+++NP QFDV+V
Sbjct: 181 RRKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVIV 239
Query: 293 MPNLYGNIV-DNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLL 351
N++G+I+ D S ++EP + + G+ ANP +L
Sbjct: 240 TENMFGDILSDLASVITGSLGMLPSASLRSDRFGMYEP-VHGSAPDIAGQGKANPLGTVL 298
Query: 352 CSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+ ML + L+ I AV+ VL+ G
Sbjct: 299 SAALMLRYSFGLEKEAAAIEKAVDDVLQDG 328
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 160/357 (44%), Gaps = 60/357 (16%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTM---SAPLETVADSI 127
I GDG+GPE+ + +V A + + + + E + P ET + +
Sbjct: 30 IEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKET-QEML 88
Query: 128 ARNGICLKGVLSTPDYSHTGE-LQTLNMKLRKALDLYANVVHVKSLPGVK--VRH-SNVD 183
+ + LKG L TP G+ +++N+ +R LDLYAN+ VK + G++ ++H VD
Sbjct: 89 LKYRVVLKGPLETP----IGKGWKSVNVAIRLMLDLYANIRPVKYIEGLESPLKHPEKVD 144
Query: 184 CVIIREQTEGEYSALEH----ECVPGVVECL----------------KIVTAEKSRRIAK 223
+I RE T+ Y +E+ E + + L K+++ K++RI +
Sbjct: 145 MIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKVMSKYKTQRITR 204
Query: 224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLY-----------------P 265
A YA ++ RKKVT +HK N+MK +G F E+A K Y
Sbjct: 205 LAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQG 264
Query: 266 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV 325
KI I DN QI+ P ++D+++ PN+ G+ + + E
Sbjct: 265 KIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGMLGGANIGDEGG 324
Query: 326 VFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381
+FE A H T + GKNVANPT ++ ML + D+I A+N ++ K
Sbjct: 325 MFE--AIHGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAINMAIRDKK 379
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 153/338 (45%), Gaps = 47/338 (13%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVD--FEPFF----------FSEVNPTMSAPLE 121
K ++PGDG+GPE+V +V + FE F F E P + +
Sbjct: 14 KIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKIC 73
Query: 122 TVADSIARNGICLKGVLSTPDYS-----HTGELQTLNMKLRKALDLYANV---------V 167
AD+I G + P + E+ L + LRK L+LYAN+ V
Sbjct: 74 LEADAI------FLGSVGGPKWDDLPPEKRPEIGGL-LALRKMLNLYANIRPIKVYRSLV 126
Query: 168 HVKSLPGVKVRHSNVDCVIIREQTEGEY----SALEHECVPGVVECLKIVTAEKSRRIAK 223
HV L KV S VD V +RE + G Y L+ E + I + RIA+
Sbjct: 127 HVSPLKE-KVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTM----IYDRKTVERIAR 181
Query: 224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVS 283
AF+ A KN RKKVT+V KAN++ L+ E+A+ YP ++ + VDN MQ++
Sbjct: 182 TAFEIA-KNRRKKVTSVDKANVL-YSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLIL 239
Query: 284 NPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNV 343
P QFDV++ N++G+I+ + + + ++EP A + + GKN+
Sbjct: 240 KPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDKN-LYEP-AGGSAPDIAGKNI 297
Query: 344 ANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
ANP A +L ML H + I AV V++ G
Sbjct: 298 ANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEG 335
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 151/342 (44%), Gaps = 36/342 (10%)
Query: 69 PEGRTKCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEVNPTMS---APLE 121
P + IPGDG+G E++ V +AA + ++F+ F ++ + + +
Sbjct: 2 PAHSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKXXPD 61
Query: 122 TVADSIARNGICLKGVLSTPDY--SHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH 179
A+ + + G + PD H +L +K R+ D Y N+ V+ PGV
Sbjct: 62 DWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSL-LKFRREFDQYVNIRPVRLFPGVPCAL 120
Query: 180 SN-----VDCVIIREQTEGEYSAL--------EHECVPGVVECLKIVTAEKSRRIAKFAF 226
+N +D V++RE TEGEYS+L E+E V + E I T RI K+AF
Sbjct: 121 ANRKVGDIDFVVVRENTEGEYSSLGGIXFENTENEIV--IQES--IFTRRGVDRILKYAF 176
Query: 227 DYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPH 286
D A K RK VT+ K+N + + + A YP + +++ +D + V P
Sbjct: 177 DLAEKRERKHVTSATKSNGXAISXPYWDKRTEAXAAHYPHVSWDKQHIDILCARFVLQPE 236
Query: 287 QFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPE---CVVFEPGARHTYSEAVGKNV 343
+FDV+V NL+G+I+ + +PE +FEP + + GKN+
Sbjct: 237 RFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEP-VHGSAPDIFGKNI 295
Query: 344 ANPTAMLLCSTKMLSHVN-----LQYYGDMIRNAVNRVLKAG 380
ANP A + L + Q D NA+ RV+ G
Sbjct: 296 ANPIAXIWSGALXLEFLGQGDERYQRAHDDXLNAIERVIADG 337
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 150/332 (45%), Gaps = 32/332 (9%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFE----------PFFFSEVNPTMSAPLETV 123
K + GDG+GPE+V + ++V A + + +P +A L+
Sbjct: 3 KIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQL- 61
Query: 124 ADSIARNGICLKGVLSTPD---YSHTGELQTLNMKLRKALDLYANVVHVKSLPGV----K 176
++A + + L G + P Y + ++LRK LDLYAN+ + P +
Sbjct: 62 --AMAADAVIL-GAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASP 118
Query: 177 VRHS---NVDCVIIREQTEGEYSALEH--ECVPGVVECLKIVTAEKS--RRIAKFAFDYA 229
+R +VD +++RE T Y E + G + ++ RRIA AF A
Sbjct: 119 LRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAF-RA 177
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
+ RK++ +V KAN+++ L+ E+A+ YP ++ M VDN MQ++ P QFD
Sbjct: 178 AQGRRKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFD 236
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAM 349
V++ N++G+I+ + ++EP + + G++ ANP A
Sbjct: 237 VLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEP-IHGSAPDIAGQDKANPLAT 295
Query: 350 LLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+L ML H +N + + + AV RVL G
Sbjct: 296 ILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG 327
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 157/336 (46%), Gaps = 37/336 (11%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEV---NPTMSAPLETVADS 126
+ ++ GDG+GPE++ ++V KA + +++ + + N P T+
Sbjct: 15 QIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGC 74
Query: 127 IARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVK-- 176
A + + L G + P + H G L + LR +L+ N+ K PG++
Sbjct: 75 EAADAV-LFGSVGGPKWEHLPPNDQPERGAL----LPLRGHFELFCNMRPAKLHPGLEHM 129
Query: 177 ------VRHSNVDCVIIREQTEGEY----SALEHECVPGVVECLKIVTAEKSRRIAKFAF 226
+ D + +RE T G Y + E + ++ RRIAK AF
Sbjct: 130 SPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTMRYSRKEIRRIAKIAF 189
Query: 227 DYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPH 286
+ A + RKKVT+V KAN++ L+ +E+AK YP ++ E + +DN TMQ++ P+
Sbjct: 190 ESA-QGRRKKVTSVDKANVLAC-SVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPN 247
Query: 287 QFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV-VFEPGARHTYSEAVGKNVAN 345
+FDVM+ NL+G+IV + + + ++EP A + + G+ +AN
Sbjct: 248 EFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEP-AGGSAPDIAGQGIAN 306
Query: 346 PTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
P A +L + +L H + L+ I AV++ L +G
Sbjct: 307 PVAQILSAALLLRHSLKLEDAALAIEAAVSKALNSG 342
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 51/343 (14%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
+ ++ GDG+GPE++ ++V A D +SE + +A P T+
Sbjct: 15 QIAVLAGDGIGPEVMAEARKVLAAVEKRFDLS-IEYSEYDVGGAAIDNHGCPLPEATLKG 73
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVK- 176
A + + L G + P + H G L + LR +L+ N+ K PG++
Sbjct: 74 CEAADAV-LFGSVGGPKWEHLPPNDQPERGAL----LPLRGHFELFCNMRPAKLHPGLEH 128
Query: 177 -------VRHSNVDCVIIREQTEGEY--------SALEHECVPGVVECLKIV--TAEKSR 219
+ D + +RE T G Y E+E E + + ++ R
Sbjct: 129 MSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENE------EAFDTMRYSRKEIR 182
Query: 220 RIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTM 279
RIAK AF+ A + RKKVT+V KAN++ L+ +E+AK YP ++ E + +DN TM
Sbjct: 183 RIAKIAFESA-QGRRKKVTSVDKANVLAC-SVLWREVVEEVAKDYPDVELEHIYIDNATM 240
Query: 280 QIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV-VFEPGARHTYSEA 338
Q++ P++FDVM+ NL+G+IV + + + ++EP A + +
Sbjct: 241 QLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEP-AGGSAPDI 299
Query: 339 VGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
G+ +ANP A +L + +L H + L+ I AV++ L G
Sbjct: 300 AGQGIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSDG 342
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 78/373 (20%)
Query: 77 LIPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSE--VNPTMSA-PLETVADS 126
I GDG GP++ + +V +AA + ++ + E N T P ET+ D
Sbjct: 24 FIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETL-DV 82
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKV---RHSNVD 183
I I +KG L+TP G +++LN+ LR+ LDL+ + V+ GV R + D
Sbjct: 83 IREYFIAIKGPLTTP---VGGGIRSLNVALRQELDLFVXLRPVRYFTGVPSPVKRPEDTD 139
Query: 184 CVIIREQTEGEYSALEH----ECVPGVVECL-------------------KIVTAEKSRR 220
VI RE TE Y+ +E+ E V ++ L K V+ E + R
Sbjct: 140 MVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSR 199
Query: 221 IAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA------KLYPKIQFEQM-- 272
+ + A DYA ++ RK VT VHK NIMK +G F N E+A K++ Q++++
Sbjct: 200 LVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAE 259
Query: 273 -------------------------IVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXX 307
I D QI++ P++FDV+ NL G+ + +
Sbjct: 260 EQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAA 319
Query: 308 XXXXXXXXXXXXWSPEC--VVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQY 364
+ E +FE A H T + G + NP++++L +L H+
Sbjct: 320 QVGGIGIAPGANINYETGHAIFE--ATHGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNE 377
Query: 365 YGDMIRNAVNRVL 377
D++ ++ + +
Sbjct: 378 AADLVIKSMEKTI 390
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 26/307 (8%)
Query: 73 TKCTLIPGDGVGPELVYSVQEVFKAANVP------VDFEPFFFSEVNPTMSAPLETVADS 126
+K +I GDG+GPE+ +V A VP D F + P VA+
Sbjct: 2 SKLAIIAGDGIGPEVTAEAVKVLDAV-VPGVQKTSYDLGARRFHATGEVL--PDSVVAEL 58
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSN---VD 183
+ I L G + P + L ++LR LD + N+ + PGV S +D
Sbjct: 59 RNHDAILL-GAIGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGID 117
Query: 184 CVIIREQTEGEYSALEHECVPG----VVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTA 239
V++RE TEG Y+ G V + + TA RR+ AF+ A + RK +T
Sbjct: 118 FVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERA-RRRRKHLTL 176
Query: 240 VHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGN 299
VHK N++ GL+L + E+ + YP ++ VD T+ ++++P +FDV+V NL+G+
Sbjct: 177 VHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGD 236
Query: 300 IVDNXXXX-----XXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCST 354
I+ + +P +FEP + + G+ +A+PTA ++
Sbjct: 237 IITDLAAAVCGGIGLAASGNIDATRANPS--MFEP-VHGSAPDIAGQGIADPTAAIMSVA 293
Query: 355 KMLSHVN 361
+LSH+
Sbjct: 294 LLLSHLG 300
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 144/344 (41%), Gaps = 70/344 (20%)
Query: 75 CTLIPGDGVGPELVYS--------VQEVFKAANVPVDFEPFFF-------SEVNPTMSAP 119
I GDGVGPE+V S V++V+ + V +E E+ P A
Sbjct: 38 VAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLP--KAT 95
Query: 120 LETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVK--SLPGVKV 177
LE + +AR + LKG L TP TG ++LN+ +R+ALDLYAN+ V+ P
Sbjct: 96 LEGI--RLAR--VALKGPLETP--VGTG-YRSLNVAIRQALDLYANIRPVRYYGQPAPHK 148
Query: 178 RHSNVDCVIIREQTEGEYSALE--HECVPGVVECLKIVTAE------------------- 216
VD VI RE TE Y+ +E H+ P + + E
Sbjct: 149 YADRVDMVIFRENTEDVYAGIEWPHDS-PEAARIRRFLAEEFGISIREDAGIGVKPISRF 207
Query: 217 KSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA--------------- 261
+RR+ + A ++A +N VT +HK NIMK +G F+ E+A
Sbjct: 208 ATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQ 267
Query: 262 ------KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+ KI I DN QI++ P + V+V PNL G+ + +
Sbjct: 268 EKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMA 327
Query: 316 XXXXWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH 359
V EP T + GK++ NP+A +L ++ ++
Sbjct: 328 AGMNMGDGIAVAEP-VHGTAPKYAGKDLINPSAEILSASLLIGE 370
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 152/331 (45%), Gaps = 31/331 (9%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAANVPVD-------FEPFFFSEVNPTMSAPLETVADSIA 128
++PGDG+GPE++ +V A D ++ + N P TV
Sbjct: 8 AVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQ 67
Query: 129 RNGICLKGVLSTPDYSH----TGELQTLNMKLRKALDLYANVVHVKSLPGVK-------- 176
+ I L G + P + + + + + LRK L++N+ K G++
Sbjct: 68 ADAI-LFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 177 VRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAE-----KSRRIAKFAFDYATK 231
+ + D + +RE T G Y + + G + K E + RIA+ AF+ A K
Sbjct: 127 IAANGFDILCVRELTGGIYFG-QPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARK 185
Query: 232 NNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVM 291
R+KVT++ KAN+++ L+ ++AK YP ++ M +DN TMQ++ +P QFDV+
Sbjct: 186 R-RRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVL 243
Query: 292 VMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV-VFEPGARHTYSEAVGKNVANPTAML 350
+ NL+G+I+ + + + ++EP A + + GKN+ANP A +
Sbjct: 244 LCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEP-AGGSAPDIAGKNIANPIAQI 302
Query: 351 LCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
L +L + ++ I A+NR L+ G
Sbjct: 303 LSLALLLRYSLDANDAATAIEQAINRALEEG 333
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G +++LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARHTYSEA-VGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H + A G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPAYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 27/311 (8%)
Query: 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETV 123
R TL+PGDG+GPE+V + V + A E F F E+ +A P ET+
Sbjct: 42 RYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVE-FNFREMPIGGAALDLVGVPLPEETI 100
Query: 124 ADSIARNGICLKGVLSTPDYSHTGELQTLN--MKLRKALDLYANVVHVKSLPGV------ 175
+ + + + L + ++ L+ +++R AL ++AN+ LP +
Sbjct: 101 SAAKESDAVLLGAIGGYKWDNNEKHLRPEKGLLQIRAALKVFANLRPATVLPQLVDASTL 160
Query: 176 -KVRHSNVDCVIIREQTEGEY-----SALEHECVPGVVECLKIVTAEKSRRIAKFAFDYA 229
+ VD +++RE T G Y +E V ++ A + RIA+ AF+ A
Sbjct: 161 KREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETA 220
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K R K+ +V KAN+++ L+ +A YP ++ M VDN MQ+V +P QFD
Sbjct: 221 RKR-RGKLCSVDKANVLE-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFD 278
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPEC-VVFEPGARHTYSEAVGKNVANPTA 348
+V N++G+I+ + S +FEP + + G++ ANP A
Sbjct: 279 TIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEP-IHGSAPDIAGQDKANPLA 337
Query: 349 MLLCSTKMLSH 359
+L + +L +
Sbjct: 338 TILSAAMLLKY 348
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G +++LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 41/338 (12%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEV---NPTMSAPLETVADS 126
+ ++ GDG+GPE++ ++V KA + +++ + + N P T+
Sbjct: 15 QIAVLAGDGIGPEVMAEARKVLKAVEARFGLNIEYTEYDVGGIAIDNHGCPLPEATLKGC 74
Query: 127 IARNGICLKGVLSTPDYS--------HTGELQTLNMKLRKALDLYANVVHVKSLPGVK-- 176
A + I L G + P + G L + LR +L+ N+ K G++
Sbjct: 75 EAADAI-LFGSVGGPKWEKLPPNEQPERGAL----LPLRGHFELFCNLRPAKLHDGLEHM 129
Query: 177 ------VRHSNVDCVIIREQTEGEYSAL------EHECVPGVVECLKIVTAEKSRRIAKF 224
+ D + +RE T G Y E E + ++ E S RIA+
Sbjct: 130 SPLRSDISARGFDVLCVRELTGGIYFGKPKGRQGEGESEE-AFDTMRYSRREIS-RIARI 187
Query: 225 AFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSN 284
AF+ A + RKKVT+V KAN++ L+ +E+A +P ++ E + +DN TMQ++
Sbjct: 188 AFE-AARGRRKKVTSVDKANVLAC-SVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRR 245
Query: 285 PHQFDVMVMPNLYGNIV-DNXXXXXXXXXXXXXXXXWSPECVVFEPGARHTYSEAVGKNV 343
P +FDVM+ NL+G+I+ D S +FEP A + + GK +
Sbjct: 246 PDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASMNSTGFGLFEP-AGGSAPDIAGKGI 304
Query: 344 ANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
ANP A +L + ML H + + I AV + L +G
Sbjct: 305 ANPIAQILSAALMLRHSLKQEEAASAIERAVTKALNSG 342
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 30 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 88
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G +++LN+ LR+ LDLY + V+ G V+H +
Sbjct: 89 LIREYRVAIKGPLTTP---VGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 145
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 146 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 201
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 202 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 261
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 262 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 321
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 322 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 379
Query: 375 RVLKA 379
+ A
Sbjct: 380 GAINA 384
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 148/331 (44%), Gaps = 31/331 (9%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAAN-------VPVDFEPFFFSEVNPTMSAPLETVADSIA 128
++PGDG+GPE++ +V A ++ + N P TV +
Sbjct: 8 AVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATV-EGCE 66
Query: 129 RNGICLKGVLSTPDYSHTGELQTLN----MKLRKALDLYANVVHVKSLPGVK-------- 176
+ L G + P + H Q + LRK L++N+ K G++
Sbjct: 67 QADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRAD 126
Query: 177 VRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAE-----KSRRIAKFAFDYATK 231
+ + D + +RE T G Y + + G + K E + RIA+ AF+ A K
Sbjct: 127 IAANGFDILCVRELTGGIYFG-QPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESARK 185
Query: 232 NNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVM 291
R KVT++ KAN+++ L+ E+A YP ++ M +DN TMQ++ +P QFDV+
Sbjct: 186 R-RHKVTSIDKANVLQ-SSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQFDVL 243
Query: 292 VMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV-VFEPGARHTYSEAVGKNVANPTAML 350
+ NL+G+I+ + + + ++EP A + + GKN+ANP A +
Sbjct: 244 LCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEP-AGGSAPDIAGKNIANPIAQI 302
Query: 351 LCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
L +L + ++ I A+NR L+ G
Sbjct: 303 LSLALLLRYSLDADDAACAIERAINRALEEG 333
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 152/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G ++ LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRDLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 152/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G ++ LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRXLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 153/361 (42%), Gaps = 65/361 (18%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGV--KVRHSNV- 182
I + +KG L+TP G +++LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHECVPGVVE-----------------------CLKIVTAEKSR 219
D VI RE +E Y+ +E + E +K ++ E ++
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPMSEEGTK 207
Query: 220 RIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK----------------- 262
R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 208 RLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVK 267
Query: 263 ---LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXX 319
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 268 NPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGAN 327
Query: 320 WSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLK 378
E +FE A H T + G++ ANP +++L + ML H+ D+I + +
Sbjct: 328 IGDEYALFE--ATHGTAPDIAGQDKANPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
Query: 379 A 379
A
Sbjct: 386 A 386
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 152/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G ++ LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRELNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|3DMS|A Chain A, 1.65a Crystal Structure Of Isocitrate Dehydrogenase From
Burkholderia Pseudomallei
Length = 427
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/402 (25%), Positives = 166/402 (41%), Gaps = 78/402 (19%)
Query: 36 HQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVF 95
H VPEG K T V + +V + +P I GDG G ++ + +V
Sbjct: 13 HIKVPEGGDKIT------VNKDFSLNVSDQPIIP-------YIEGDGTGFDITPVMIKVV 59
Query: 96 KAA-------NVPVDFEPFFFSE-----VNPTMSAPLETVADSIARNGICLKGVLSTPDY 143
AA + + + E P + P ET+ + + +KG L+TP
Sbjct: 60 DAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETL-QVLKEYVVSIKGPLTTP-- 116
Query: 144 SHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRH-SNVDCVIIREQTEGEYS---- 196
G +++LN+ LR+ LDLY + ++ GV VR + VI RE +E Y+
Sbjct: 117 -VGGGIRSLNVALRQELDLYVCLRPIQYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEW 175
Query: 197 ALEHECVPGVVECL-------------------KIVTAEKSRRIAKFAFDYATKNNRKKV 237
A E E V++ L K V+ E + R+ + A YA N+RK V
Sbjct: 176 AAESEQAKKVIKFLQEEMGVKKIRFPQTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSV 235
Query: 238 TAVHKANIMKLGDGLFLNSCKEMAKLY---------PKIQF-----------EQMIVDNC 277
T VHK NIMK +G F ++ +A+ P ++F + I D
Sbjct: 236 TLVHKGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAF 295
Query: 278 TMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECVVFEPGARH-TYS 336
QI+ P ++DV+ NL G+ + + S +FE A H T
Sbjct: 296 LQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFE--ATHGTAP 353
Query: 337 EAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLK 378
+ GK+ NP + +L + ML H+ D+I +A+ + +K
Sbjct: 354 KYAGKDYVNPGSEILSAEMMLRHLGWTEAADVIISAMEKSIK 395
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 153/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G +++LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E ++ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIFAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 152/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G +++LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VH NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHMGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 152/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + + G L+TP G +++LN+ LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIMGPLTTP---VGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 152/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G +++L + LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRSLLVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 151/365 (41%), Gaps = 73/365 (20%)
Query: 78 IPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTMSA-----PLETVAD 125
I GDG+G ++ ++ +V AA + + + E + + P ET+ D
Sbjct: 32 IEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL-D 90
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK--VRHSNV- 182
I + +KG L+TP G ++ L + LR+ LDLY + V+ G V+H +
Sbjct: 91 LIREYRVAIKGPLTTP---VGGGIRELLVALRQELDLYICLRPVRYYQGTPSPVKHPELT 147
Query: 183 DCVIIREQTEGEYSALEHE---------------------------CVPGVVECLKIVTA 215
D VI RE +E Y+ +E + C G+ C +
Sbjct: 148 DMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPDHCGIGIKPC----SE 203
Query: 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK------------- 262
E ++R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 204 EGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPW 263
Query: 263 -------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXX 315
+I + +I D QI+ P ++DV+ NL G+ + +
Sbjct: 264 LKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIA 323
Query: 316 XXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374
EC +FE A H T + G++ NP +++L + ML H+ D+I +
Sbjct: 324 PGANIGDECALFE--ATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGME 381
Query: 375 RVLKA 379
+ A
Sbjct: 382 GAINA 386
>pdb|2D4V|A Chain A, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|B Chain B, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|C Chain C, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
pdb|2D4V|D Chain D, Crystal Structure Of Nad Dependent Isocitrate
Dehydrogenase From Acidithiobacillus Thiooxidans
Length = 429
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 93/379 (24%), Positives = 149/379 (39%), Gaps = 82/379 (21%)
Query: 77 LIPGDGVGPELVYSVQEVFKAANVPV-------DFEPFFFSEVNPTMSA-----PLETVA 124
I GDG+G ++ +++ V AA V + F + + P ET+A
Sbjct: 31 FIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMA 90
Query: 125 DSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGV--KVRH-SN 181
+I + +KG L TP G +++LN+ +R+ LDLY + V+ G +RH
Sbjct: 91 -AIREYKVAIKGPLETP---VGGGIRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPEK 146
Query: 182 VDCVIIREQTEGEYSALEHECVPGVVECLKI-------------------------VTAE 216
VD VI RE +E Y+ +E G E KI V+ E
Sbjct: 147 VDMVIFRENSEDIYAGIEWPA--GSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTE 204
Query: 217 KSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLN--------------------- 255
S R+ + YA ++ + V+ VHK NIMK +G F +
Sbjct: 205 GSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKA 264
Query: 256 ------------SCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDN 303
++ A K+ + +I DN QI+ P + V+ NL G+ V +
Sbjct: 265 AISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSD 324
Query: 304 XXXXXXXXXXXXXXXXWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNL 362
S +FE A H T + G+ ANP++++L + ML H+
Sbjct: 325 ALAAEVGGIGMAPGANLSDTHAIFE--ATHGTAPDIAGQGKANPSSLILSAVMMLEHLGW 382
Query: 363 QYYGDMIRNAVNRVLKAGK 381
I A+N + AG+
Sbjct: 383 GEAAQAIVAAMNATIAAGE 401
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 145/333 (43%), Gaps = 32/333 (9%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA-PLETVADSIARNG- 131
K ++PGDG+GPE+V +V A + + E S PL ++A+
Sbjct: 10 KIAVLPGDGIGPEIVNEAVKVLNALDEKFELEHAPVGGAGYEASGHPLPDATLALAKEAD 69
Query: 132 ICLKGVLSTPDYSHTGELQTLN-----MKLRKALDLYANVVH-------VKSLPGVKVRH 179
L G + D+ + + L + LRK L+L+AN V + P
Sbjct: 70 AILFGAVG--DWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELV 127
Query: 180 SNVDCVIIRE--------QTEGEYSALEHECVPGVVECLKIV--TAEKSRRIAKFAFDYA 229
+ +D +I+RE Q G +A + G E + + + RRIA AF A
Sbjct: 128 AGLDILIVRELNGDIYFGQPRGVRAAPDGPFA-GEREGFDTMRYSEPEVRRIAHVAFQAA 186
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
K KK+ +V K+N+++ + + +++K Y ++ M VDN MQ+ P QFD
Sbjct: 187 QKRA-KKLLSVDKSNVLETSQ-FWRDVMIDVSKEYADVELSHMYVDNAAMQLAKAPKQFD 244
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV-VFEPGARHTYSEAVGKNVANPTA 348
V+V N++G+I+ + ++EP + + + GK +ANP A
Sbjct: 245 VIVTGNMFGDILSDEASMLTGSIGMLPSASLDKNNKGLYEP-SHGSAPDIAGKGIANPLA 303
Query: 349 MLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+L + +L + +N D I AV VL+ G
Sbjct: 304 TILSAAMLLRYSLNRAEQADRIERAVKTVLEQG 336
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 144/334 (43%), Gaps = 36/334 (10%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGIC 133
K ++ GDG+GP LV ++E K F F E+N A +A +
Sbjct: 8 KVAVLAGDGIGP-LV--MKEALKILTFIAQKYNFSF-ELNEAKIGGASIDAYGVALSDET 63
Query: 134 LK----------GVLSTPDYSHTG-----ELQTLNMKLRKALDLYANV---------VHV 169
LK G + P + + E +L + LRK +L+AN+ H
Sbjct: 64 LKLCEQSDAILFGSVGGPKWDNLPIDQRPERASL-LPLRKHFNLFANLRPCKIYESLTHA 122
Query: 170 KSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYA 229
L ++ VD + +RE T G Y + + +I T ++ RIA+ AF+ A
Sbjct: 123 SPLKN-EIIQKGVDILCVRELTGGIYFGKQDLGKESAYDT-EIYTKKEIERIARIAFESA 180
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
+ +KKV + KAN++ L+ +AK Y I E M VDN MQIV NP FD
Sbjct: 181 -RIRKKKVHLIDKANVLA-SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFD 238
Query: 290 VMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPECV-VFEPGARHTYSEAVGKNVANPTA 348
VM+ NL+G+I+ + + + ++EP A + + N+ANP A
Sbjct: 239 VMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP-AGGSAPDIAHLNIANPIA 297
Query: 349 MLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
+L + ML + + I NA++ L GK
Sbjct: 298 QILSAALMLKYSFKEEQAAQDIENAISLALAQGK 331
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 106/239 (44%), Gaps = 16/239 (6%)
Query: 154 MKLRKALDLYANV---------VHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVP 204
+ LRK +L+AN+ H L ++ VD + +RE T G Y +
Sbjct: 98 LPLRKHFNLFANLRPCKIYESLTHASPLKN-EIIQKGVDILCVRELTGGIYFGKQDLGKE 156
Query: 205 GVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY 264
+ +I T ++ RIA+ AF+ A + +KKV + KAN++ L+ +AK Y
Sbjct: 157 SAYDT-EIYTKKEIERIARIAFESA-RIRKKKVHLIDKANVLA-SSILWREVVANVAKDY 213
Query: 265 PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNXXXXXXXXXXXXXXXXWSPEC 324
I E VDN QIV NP FDV + NL+G+I+ + + +
Sbjct: 214 QDINLEYXYVDNAAXQIVKNPSIFDVXLCSNLFGDILSDELAAINGSLGLLSSASLNDKG 273
Query: 325 V-VFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
++EP A + + N+ANP A +L + L + + I NA++ L GK
Sbjct: 274 FGLYEP-AGGSAPDIAHLNIANPIAQILSAALXLKYSFKEEQAAQDIENAISLALAQGK 331
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNV 182
++RNG+ KG S D+ T L+ L++ + + +N + ++ L + +HSN+
Sbjct: 354 LSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNV 182
++RNG+ KG S D+ T L+ L++ + + +N + ++ L + +HSN+
Sbjct: 354 LSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNV 182
++RNG+ KG S D+ T L+ L++ + + +N + ++ L + +HSN+
Sbjct: 378 LSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 126 SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNV 182
S++ NG+ KG S D+ T L+ L++ + + +N + ++ L + +HSN+
Sbjct: 58 SLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
>pdb|4E2Z|A Chain A, X-Ray Structure Of The H225n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 18 KNYGQNIVKNSIHSTAVIHQSVPEGRT---------KCTLIPGDGVGPELVYSVQEHQSV 68
+ + N+VK TA++H+ EGR+ T+ G+GP+LV+SV + +
Sbjct: 295 RAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSV--YDTT 352
Query: 69 PEGRTKCTLIPG 80
P+ + + T PG
Sbjct: 353 PDKQNRLT--PG 362
>pdb|4E2W|A Chain A, X-Ray Structure Of The H181n Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 18 KNYGQNIVKNSIHSTAVIHQSVPEGRT---------KCTLIPGDGVGPELVYSVQEHQSV 68
+ + N+VK TA++H+ EGR+ T+ G+GP+LV+SV + +
Sbjct: 295 RAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSV--YDTT 352
Query: 69 PEGRTKCTLIPG 80
P+ + + T PG
Sbjct: 353 PDKQNRLT--PG 362
>pdb|4E30|A Chain A, X-Ray Structure Of The H181nE224Q DOUBLE MUTANT OF TCAB9,
A C-3'- Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 18 KNYGQNIVKNSIHSTAVIHQSVPEGRT---------KCTLIPGDGVGPELVYSVQEHQSV 68
+ + N+VK TA++H+ EGR+ T+ G+GP+LV+SV + +
Sbjct: 295 RAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSV--YDTT 352
Query: 69 PEGRTKCTLIPG 80
P+ + + T PG
Sbjct: 353 PDKQNRLT--PG 362
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 18 KNYGQNIVKNSIHSTAVIHQSVPEGRT---------KCTLIPGDGVGPELVYSVQEHQSV 68
+ + N+VK TA++H+ EGR+ T+ G+GP+LV+SV + +
Sbjct: 295 RAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSV--YDTT 352
Query: 69 PEGRTKCTLIPG 80
P+ + + T PG
Sbjct: 353 PDKQNRLT--PG 362
>pdb|4E2X|A Chain A, X-Ray Structure Of The Y222f Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Dtdp
Length = 416
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 18 KNYGQNIVKNSIHSTAVIHQSVPEGRT---------KCTLIPGDGVGPELVYSVQEHQSV 68
+ + N+VK TA++H+ EGR+ T+ G+GP+LV+SV + +
Sbjct: 295 RAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSV--YDTT 352
Query: 69 PEGRTKCTLIPG 80
P+ + + T PG
Sbjct: 353 PDKQNRLT--PG 362
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 18 KNYGQNIVKNSIHSTAVIHQSVPEGRT---------KCTLIPGDGVGPELVYSVQEHQSV 68
+ + N+VK TA++H+ EGR+ T+ G+GP+LV+SV + +
Sbjct: 295 RAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSV--YDTT 352
Query: 69 PEGRTKCTLIPG 80
P+ + + T PG
Sbjct: 353 PDKQNRLT--PG 362
>pdb|3NDI|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosylmethionine And Dtmp
pdb|3NDJ|A Chain A, X-Ray Structure Of A C-3'-Methyltransferase In Complex
With S- Adenosyl-L-Homocysteine And Sugar Product
pdb|4E32|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Dtdp-Sugar
Substrate
pdb|4E33|A Chain A, X-Ray Structure Of The C-3'-Methyltransferase Tcab9 In
Complex With S- Adenosyl-L-Homocysteine And Reduced
Dtdp-Sugar Substrate
Length = 416
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 18 KNYGQNIVKNSIHSTAVIHQSVPEGRT---------KCTLIPGDGVGPELVYSVQEHQSV 68
+ + N+VK TA++H+ EGR+ T+ G+GP+LV+SV + +
Sbjct: 295 RAFAGNVVKIRDELTALLHRLRAEGRSVVGYGATAKSATVTNFCGIGPDLVHSV--YDTT 352
Query: 69 PEGRTKCTLIPG 80
P+ + + T PG
Sbjct: 353 PDKQNRLT--PG 362
>pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
pdb|2PLA|B Chain B, Crystal Structure Of Human Glycerol-3-Phosphate
Dehydrogenase 1-Like Protein
Length = 349
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 68 VPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPL---ETVA 124
VP+ TLI G GPE + + ++ + + +D + + ++A T+
Sbjct: 111 VPKKALGITLIKGIDEGPEGLKLISDIIRE-KMGIDISVLMGANIANEVAAEKFCETTIG 169
Query: 125 DSIARNGICLKGVLSTPDYSHT 146
+ NG+ K +L TP++ T
Sbjct: 170 SKVMENGLLFKELLQTPNFRIT 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,713,424
Number of Sequences: 62578
Number of extensions: 420518
Number of successful extensions: 1131
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 129
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)