Query psy9726
Match_columns 381
No_of_seqs 231 out of 1367
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:01:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 1E-111 2E-116 820.9 28.7 308 71-379 2-320 (348)
2 PRK08997 isocitrate dehydrogen 100.0 9E-108 2E-112 803.3 32.0 305 73-381 3-311 (334)
3 PLN00123 isocitrate dehydrogen 100.0 1E-106 3E-111 799.1 34.6 306 69-380 27-335 (360)
4 PLN00118 isocitrate dehydrogen 100.0 5E-107 1E-111 805.7 31.2 313 65-381 34-349 (372)
5 PRK14025 multifunctional 3-iso 100.0 2E-106 3E-111 793.4 31.6 301 73-381 2-308 (330)
6 PRK03437 3-isopropylmalate deh 100.0 3E-106 6E-111 796.0 31.7 309 71-380 3-326 (344)
7 TIGR00175 mito_nad_idh isocitr 100.0 9E-106 2E-110 791.3 33.1 310 70-381 1-310 (333)
8 PRK09222 isocitrate dehydrogen 100.0 2E-105 5E-110 813.3 32.1 305 72-380 4-312 (482)
9 TIGR02924 ICDH_alpha isocitrat 100.0 6E-105 1E-109 807.2 30.4 303 74-380 2-308 (473)
10 PRK08194 tartrate dehydrogenas 100.0 1E-104 3E-109 786.6 30.6 307 72-380 3-326 (352)
11 TIGR02089 TTC tartrate dehydro 100.0 2E-104 5E-109 785.4 30.8 307 72-380 3-329 (352)
12 KOG0785|consensus 100.0 1E-104 3E-109 754.3 24.8 312 66-381 29-342 (365)
13 PLN02329 3-isopropylmalate deh 100.0 4E-104 9E-109 791.1 29.5 306 72-380 46-374 (409)
14 TIGR00169 leuB 3-isopropylmala 100.0 1E-102 3E-107 772.0 31.1 304 74-380 1-326 (349)
15 PRK06451 isocitrate dehydrogen 100.0 1E-102 3E-107 783.6 30.9 304 73-381 25-381 (412)
16 PRK00772 3-isopropylmalate deh 100.0 2E-101 4E-106 765.1 31.1 305 72-380 2-329 (358)
17 PRK07006 isocitrate dehydrogen 100.0 2E-101 3E-106 776.8 30.7 302 75-380 22-380 (409)
18 TIGR02088 LEU3_arch isopropylm 100.0 6E-101 1E-105 752.7 30.6 300 75-381 1-303 (322)
19 TIGR00183 prok_nadp_idh isocit 100.0 7E-101 1E-105 774.9 31.3 304 74-381 28-388 (416)
20 PRK07362 isocitrate dehydrogen 100.0 1E-100 2E-105 768.5 31.0 303 74-380 30-444 (474)
21 PF00180 Iso_dh: Isocitrate/is 100.0 2E-98 4E-103 745.9 22.7 304 74-380 1-325 (348)
22 KOG0784|consensus 100.0 9E-93 1.9E-97 680.8 26.5 313 67-381 37-349 (375)
23 PRK08299 isocitrate dehydrogen 100.0 5.2E-91 1.1E-95 695.5 29.7 301 72-380 7-368 (402)
24 PLN00103 isocitrate dehydrogen 100.0 8.6E-89 1.9E-93 681.0 30.4 304 72-381 9-373 (410)
25 PTZ00435 isocitrate dehydrogen 100.0 2.3E-83 4.9E-88 641.7 29.2 301 72-380 9-371 (413)
26 TIGR00127 nadp_idh_euk isocitr 100.0 2.6E-83 5.6E-88 640.6 29.0 300 73-380 7-369 (409)
27 PLN03065 isocitrate dehydrogen 100.0 4.3E-82 9.4E-87 639.4 31.0 303 72-381 77-440 (483)
28 COG0538 Icd Isocitrate dehydro 100.0 5.4E-81 1.2E-85 608.1 28.7 320 44-381 4-377 (407)
29 KOG0786|consensus 100.0 4E-81 8.7E-86 580.5 20.9 308 71-380 3-335 (363)
30 PLN00096 isocitrate dehydrogen 100.0 7.7E-66 1.7E-70 509.4 27.1 295 76-381 2-369 (393)
31 KOG1526|consensus 100.0 5.6E-35 1.2E-39 278.0 18.4 301 73-381 19-381 (422)
32 KOG0784|consensus 98.2 1.1E-06 2.5E-11 86.2 3.9 62 36-97 35-99 (375)
33 KOG0785|consensus 98.0 4.2E-06 9.1E-11 81.4 3.2 56 42-97 34-94 (365)
34 PLN00123 isocitrate dehydrogen 97.3 0.00015 3.2E-09 73.1 3.2 62 36-98 23-85 (360)
35 PLN00118 isocitrate dehydrogen 97.0 0.00046 1E-08 69.9 3.3 58 41-98 39-101 (372)
36 PRK09222 isocitrate dehydrogen 96.7 0.0011 2.3E-08 69.2 3.0 38 42-79 3-40 (482)
37 TIGR00175 mito_nad_idh isocitr 96.6 0.0011 2.4E-08 66.4 2.2 58 41-98 1-61 (333)
38 PRK08997 isocitrate dehydrogen 96.5 0.0018 3.8E-08 64.9 2.8 54 44-97 3-61 (334)
39 TIGR02924 ICDH_alpha isocitrat 96.3 0.0022 4.7E-08 66.7 2.7 35 45-79 2-36 (473)
40 TIGR02089 TTC tartrate dehydro 96.3 0.002 4.4E-08 65.0 2.2 55 43-97 3-67 (352)
41 PRK14025 multifunctional 3-iso 96.2 0.0029 6.3E-08 63.2 2.9 35 44-78 2-36 (330)
42 COG0473 LeuB Isocitrate/isopro 96.1 0.0012 2.6E-08 65.8 -0.6 55 43-97 3-65 (348)
43 PRK00772 3-isopropylmalate deh 96.1 0.0033 7.1E-08 63.6 2.4 53 44-97 3-65 (358)
44 PRK03437 3-isopropylmalate deh 96.1 0.0032 6.9E-08 63.3 2.3 55 43-98 4-67 (344)
45 PRK08194 tartrate dehydrogenas 96.0 0.0035 7.6E-08 63.2 2.4 56 43-98 3-68 (352)
46 PLN02329 3-isopropylmalate deh 95.8 0.0029 6.3E-08 64.8 0.4 55 43-98 46-110 (409)
47 TIGR02088 LEU3_arch isopropylm 95.6 0.0062 1.3E-07 60.8 2.1 49 46-97 1-57 (322)
48 TIGR00169 leuB 3-isopropylmala 95.4 0.0066 1.4E-07 61.2 1.6 52 45-97 1-62 (349)
49 PRK06451 isocitrate dehydrogen 95.4 0.0081 1.8E-07 61.7 2.0 52 46-98 26-90 (412)
50 PF03971 IDH: Monomeric isocit 95.1 0.65 1.4E-05 49.6 14.9 177 199-381 443-641 (735)
51 PRK03371 pdxA 4-hydroxythreoni 94.9 0.028 6.1E-07 56.2 4.2 134 211-357 176-323 (326)
52 PRK03743 pdxA 4-hydroxythreoni 94.7 0.032 7E-07 55.9 4.1 138 211-359 177-326 (332)
53 PRK00232 pdxA 4-hydroxythreoni 94.7 0.036 7.9E-07 55.5 4.5 137 211-359 177-326 (332)
54 PRK02746 pdxA 4-hydroxythreoni 94.7 0.033 7.2E-07 56.0 4.1 140 211-359 179-339 (345)
55 TIGR00183 prok_nadp_idh isocit 94.7 0.016 3.5E-07 59.8 1.9 26 45-70 28-53 (416)
56 PRK01909 pdxA 4-hydroxythreoni 94.6 0.036 7.8E-07 55.5 4.1 137 211-359 172-322 (329)
57 TIGR00557 pdxA 4-hydroxythreon 94.5 0.042 9.1E-07 54.8 4.2 134 211-357 169-317 (320)
58 PRK07006 isocitrate dehydrogen 94.3 0.022 4.8E-07 58.6 1.9 24 46-69 22-45 (409)
59 PRK03946 pdxA 4-hydroxythreoni 94.3 0.048 1E-06 54.1 4.1 134 211-358 157-302 (307)
60 PRK05312 pdxA 4-hydroxythreoni 94.2 0.048 1E-06 54.7 4.1 136 211-359 181-331 (336)
61 PF00180 Iso_dh: Isocitrate/is 94.0 0.0041 8.8E-08 62.7 -4.0 53 45-98 1-63 (348)
62 PF04166 PdxA: Pyridoxal phosp 94.0 0.036 7.7E-07 54.8 2.6 135 211-355 150-296 (298)
63 TIGR00178 monomer_idh isocitra 93.9 1.2 2.6E-05 47.7 13.5 185 189-381 439-645 (741)
64 PRK07362 isocitrate dehydrogen 93.4 0.016 3.5E-07 60.0 -0.9 29 40-69 26-54 (474)
65 COG1995 PdxA Pyridoxal phospha 92.1 0.1 2.2E-06 52.0 2.5 63 288-357 259-323 (332)
66 KOG0786|consensus 90.3 0.064 1.4E-06 51.6 -0.8 29 42-70 3-31 (363)
67 COG2838 Icd Monomeric isocitra 88.8 5.5 0.00012 42.0 11.7 164 211-380 461-646 (744)
68 PRK08299 isocitrate dehydrogen 82.5 0.9 2E-05 46.8 2.5 55 44-98 8-67 (402)
69 PRK12862 malic enzyme; Reviewe 71.0 29 0.00064 38.8 10.4 101 211-311 607-721 (763)
70 PTZ00435 isocitrate dehydrogen 59.3 12 0.00026 38.9 4.2 23 181-203 127-149 (413)
71 PLN00103 isocitrate dehydrogen 59.3 7 0.00015 40.5 2.6 54 45-98 11-69 (410)
72 TIGR00651 pta phosphate acetyl 57.8 78 0.0017 31.4 9.6 98 214-311 157-269 (303)
73 cd06308 PBP1_sensor_kinase_lik 46.0 1.6E+02 0.0034 27.2 9.3 79 215-296 105-191 (270)
74 PRK10499 PTS system N,N'-diace 44.3 73 0.0016 26.5 6.0 54 73-137 4-58 (106)
75 PRK07232 bifunctional malic en 42.6 2E+02 0.0043 32.4 10.7 98 214-311 602-713 (752)
76 PF03602 Cons_hypoth95: Conser 42.1 73 0.0016 29.0 6.2 80 225-309 57-138 (183)
77 PRK09653 eutD phosphotransacet 42.0 1.8E+02 0.0039 29.0 9.5 97 214-311 173-284 (324)
78 TIGR00853 pts-lac PTS system, 41.8 91 0.002 25.3 6.1 55 72-137 3-58 (95)
79 PF12847 Methyltransf_18: Meth 40.8 1E+02 0.0022 24.5 6.3 62 223-295 14-78 (112)
80 COG0655 WrbA Multimeric flavod 39.8 1.7E+02 0.0037 26.8 8.4 81 74-162 5-100 (207)
81 TIGR02356 adenyl_thiF thiazole 39.3 3.1E+02 0.0066 25.2 10.7 64 225-294 37-118 (202)
82 PRK05805 phosphate butyryltran 38.6 3.2E+02 0.007 26.9 10.6 111 207-324 143-273 (301)
83 COG0538 Icd Isocitrate dehydro 36.6 9.7 0.00021 39.0 -0.6 117 44-167 19-154 (407)
84 cd06322 PBP1_ABC_sugar_binding 36.1 3.2E+02 0.0069 24.9 9.7 78 216-297 105-189 (267)
85 PRK02746 pdxA 4-hydroxythreoni 34.5 36 0.00078 34.6 3.1 18 74-91 11-30 (345)
86 PF07820 TraC: TraC-like prote 34.4 51 0.0011 27.1 3.4 39 214-265 22-60 (92)
87 cd06320 PBP1_allose_binding Pe 34.1 3.1E+02 0.0066 25.2 9.3 62 233-296 121-191 (275)
88 TIGR00127 nadp_idh_euk isocitr 34.0 23 0.00049 36.8 1.6 22 181-202 124-145 (409)
89 PRK12475 thiamine/molybdopteri 33.7 4.3E+02 0.0093 26.5 10.7 75 225-305 40-137 (338)
90 PRK01909 pdxA 4-hydroxythreoni 33.6 34 0.00074 34.5 2.8 21 72-92 5-27 (329)
91 PRK10310 PTS system galactitol 33.4 1.3E+02 0.0028 24.4 5.7 54 73-137 3-58 (94)
92 PRK07742 phosphate butyryltran 33.2 4.7E+02 0.01 25.7 10.7 111 214-331 148-275 (299)
93 PRK03743 pdxA 4-hydroxythreoni 33.1 36 0.00078 34.4 2.8 20 73-92 4-25 (332)
94 cd05564 PTS_IIB_chitobiose_lic 32.8 98 0.0021 25.1 4.9 53 74-137 1-54 (96)
95 PF03358 FMN_red: NADPH-depend 32.0 1.7E+02 0.0037 24.9 6.6 80 74-163 2-96 (152)
96 PRK12861 malic enzyme; Reviewe 31.3 3.2E+02 0.0069 30.9 10.0 98 214-311 611-722 (764)
97 PRK03946 pdxA 4-hydroxythreoni 30.6 35 0.00077 34.0 2.3 19 73-91 2-22 (307)
98 cd06323 PBP1_ribose_binding Pe 30.5 3.2E+02 0.007 24.7 8.7 79 215-296 104-190 (268)
99 PRK00232 pdxA 4-hydroxythreoni 29.7 42 0.0009 33.9 2.6 20 73-92 5-26 (332)
100 PRK15490 Vi polysaccharide bio 29.2 2E+02 0.0044 31.3 7.8 108 206-315 164-308 (578)
101 PRK03371 pdxA 4-hydroxythreoni 29.2 41 0.00089 33.9 2.5 20 73-92 3-24 (326)
102 PRK11041 DNA-binding transcrip 29.0 2.1E+02 0.0045 27.0 7.3 71 223-295 141-221 (309)
103 TIGR02709 branched_ptb branche 28.9 5.6E+02 0.012 25.1 12.7 130 214-358 125-270 (271)
104 PF01515 PTA_PTB: Phosphate ac 28.4 2.6E+02 0.0056 27.9 8.0 97 215-311 174-285 (319)
105 cd06309 PBP1_YtfQ_like Peripla 28.2 4.3E+02 0.0093 24.3 9.2 74 222-297 110-195 (273)
106 COG1995 PdxA Pyridoxal phospha 28.0 62 0.0013 32.6 3.5 11 129-139 113-123 (332)
107 cd06270 PBP1_GalS_like Ligand 27.8 2.7E+02 0.006 25.5 7.8 71 223-295 105-185 (268)
108 TIGR02069 cyanophycinase cyano 27.7 2.5E+02 0.0055 26.9 7.6 63 71-137 27-90 (250)
109 PRK05312 pdxA 4-hydroxythreoni 27.7 48 0.001 33.5 2.7 20 73-92 4-25 (336)
110 cd06294 PBP1_ycjW_transcriptio 27.2 3.9E+02 0.0084 24.3 8.6 73 222-295 110-191 (270)
111 cd00293 USP_Like Usp: Universa 27.2 3E+02 0.0065 21.4 9.0 80 215-295 9-101 (130)
112 TIGR02706 P_butyryltrans phosp 25.4 6.5E+02 0.014 24.7 10.8 111 214-331 145-272 (294)
113 cd06305 PBP1_methylthioribose_ 25.1 4.3E+02 0.0092 24.1 8.5 77 215-295 103-191 (273)
114 cd02975 PfPDO_like_N Pyrococcu 24.8 3.1E+02 0.0068 22.5 6.8 56 218-276 7-63 (113)
115 KOG1014|consensus 24.7 1.3E+02 0.0028 30.2 5.0 44 223-275 64-107 (312)
116 TIGR02690 resist_ArsH arsenica 24.5 4.5E+02 0.0097 24.9 8.5 84 70-163 24-116 (219)
117 cd01545 PBP1_SalR Ligand-bindi 24.5 4.2E+02 0.0091 24.0 8.3 73 222-295 106-187 (270)
118 PF00532 Peripla_BP_1: Peripla 23.7 2E+02 0.0044 27.5 6.2 70 223-295 107-188 (279)
119 cd06287 PBP1_LacI_like_8 Ligan 23.7 4.8E+02 0.01 24.3 8.7 73 221-295 105-186 (269)
120 cd06313 PBP1_ABC_sugar_binding 23.5 5.9E+02 0.013 23.5 9.6 78 215-296 106-192 (272)
121 PF01547 SBP_bac_1: Bacterial 22.2 2.4E+02 0.0052 26.1 6.3 42 252-293 9-57 (315)
122 PRK09590 celB cellobiose phosp 22.1 1.9E+02 0.0042 24.0 4.9 56 73-137 2-58 (104)
123 TIGR00557 pdxA 4-hydroxythreon 22.0 63 0.0014 32.5 2.3 19 74-92 1-21 (320)
124 KOG1671|consensus 21.1 53 0.0011 30.8 1.4 36 307-343 151-186 (210)
125 cd07186 CofD_like LPPG:FO 2-ph 20.9 3.6E+02 0.0077 27.0 7.3 105 120-226 174-302 (303)
126 cd01537 PBP1_Repressors_Sugar_ 20.6 5.4E+02 0.012 22.8 8.1 75 221-296 105-187 (264)
127 PF02302 PTS_IIB: PTS system, 20.3 4E+02 0.0088 20.4 6.6 54 74-138 1-56 (90)
128 PF00205 TPP_enzyme_M: Thiamin 20.0 56 0.0012 27.7 1.3 62 72-135 11-83 (137)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-111 Score=820.86 Aligned_cols=308 Identities=39% Similarity=0.597 Sum_probs=293.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHcC---CCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC
Q psy9726 71 GRTKCTLIPGDGVGPELVYSVQEVFKAAN---VPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH 145 (381)
Q Consensus 71 ~~~~IavipGDGIGpEV~~aa~~VL~a~~---~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~ 145 (381)
.+|+|++|||||||||||+++++||+++. ++|+|+++++|..++++++. |++++++|+++||+||||+|+|+|+.
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 36899999999999999999999999986 89999999999999998864 79999999999999999999998754
Q ss_pred -CcccchhhHHHHHhhcceeecEEeeecCCCCCCC-CCccEEEeccCCCceeecccce-eeCC-eEeeeeeecHHHHHHH
Q psy9726 146 -TGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH-SNVDCVIIREQTEGEYSALEHE-CVPG-VVECLKIVTAEKSRRI 221 (381)
Q Consensus 146 -~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~-~~iDivIvREnteG~Y~g~e~~-~~~~-va~~~~~~Tr~~~eRi 221 (381)
+...+|.+++|||+||||||+||+|.+||+++++ +++|||||||||||+|+|.++. ..++ +++++++|||+++|||
T Consensus 82 ~~~~~~~~ll~lRk~l~lyANlRP~k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~eva~~~~~~Tr~~~eRI 161 (348)
T COG0473 82 LPRPERGLLLALRKELDLYANLRPAKSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGGEVAIDTKVITRKGSERI 161 (348)
T ss_pred CCCcccchHHHHHHhcCceeeeeecccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCCeEEEEEEeccHHHHHHH
Confidence 2456789999999999999999999999999987 6899999999999999999884 3344 8999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHH
Q psy9726 222 AKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIV 301 (381)
Q Consensus 222 ar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDIL 301 (381)
+|+|||+|++|++|+||+|||+|||+.|++||+++++|++++||||+++|+|||+++||||++|++||||||+|||||||
T Consensus 162 ~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva~~yPdv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDIL 241 (348)
T COG0473 162 ARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVAKEYPDVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDIL 241 (348)
T ss_pred HHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHhhcCCCcchhHHhHHHHHHHHhhCccccCEEEEccchhHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHc
Q psy9726 302 DNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKA 379 (381)
Q Consensus 302 SDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~ 379 (381)
||++|+++|||||+||||+|++ ++||||+| ||||||||||+|||+|+|||++|||+|+|..++|++|++||.++|++
T Consensus 242 SD~aa~l~GslGl~PSAnig~~~~~~lfEPvH-GSAPDIAGkgiANPiA~IlS~aMML~~~g~~~~A~~Ie~Av~~vl~~ 320 (348)
T COG0473 242 SDEAAALTGSLGLAPSANLGDERGPALFEPVH-GSAPDIAGKGIANPIATILSAAMMLRHLGEKEAADAIENAVEKVLAE 320 (348)
T ss_pred HhHHHHhcCccccCccCccCCCCCCceeecCC-CCcccccCCCccChHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence 9999999999999999999997 99999999 99999999999999999999999999999999999999999999985
No 2
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=8.9e-108 Score=803.28 Aligned_cols=305 Identities=40% Similarity=0.646 Sum_probs=292.2
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCCCcccc
Q psy9726 73 TKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSHTGELQ 150 (381)
Q Consensus 73 ~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~~~~~~ 150 (381)
++|++|||||||||||+++++||++++.+|+|+++++|..++++++. |++++++|+++|++||||+++|.+ .+++
T Consensus 3 ~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~---~~~~ 79 (334)
T PRK08997 3 QTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVG---EGFT 79 (334)
T ss_pred cEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCC---cCcc
Confidence 68999999999999999999999999999999999999999988754 699999999999999999999975 3467
Q ss_pred hhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeC--CeEeeeeeecHHHHHHHHHHHHHH
Q psy9726 151 TLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVP--GVVECLKIVTAEKSRRIAKFAFDY 228 (381)
Q Consensus 151 s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~--~va~~~~~~Tr~~~eRiar~AFe~ 228 (381)
|++++|||+||||+|+||||++||+++|++++|+|||||||||+|+|.+++..+ .+++++++|||+++|||+|+||+|
T Consensus 80 ~~~~~LR~~ldlyanvRP~k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~a~~~~~~Tr~~~eRi~r~Af~~ 159 (334)
T PRK08997 80 SINVTLRKKFDLYANVRPVLSFPGTKARYDNIDIITVRENTEGMYSGEGQTVSEDGETAEATSIITRKGAERIVRFAYEL 159 (334)
T ss_pred chHHHHHHHcCCeEEEeecccCCCCCCccCCcCEEEEEeccCceecCccceecCCCceEEEEEEeeHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999865433 389999999999999999999999
Q ss_pred HHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhh
Q psy9726 229 ATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGL 308 (381)
Q Consensus 229 A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l 308 (381)
|++|++|+||++||+|||+.||+||+++|+|++++||+|+++|++||++||+|+++|++||||||+|||||||||++|++
T Consensus 160 A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l 239 (334)
T PRK08997 160 ARKEGRKKVTAVHKANIMKSTSGLFLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGL 239 (334)
T ss_pred HHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHh
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 309 VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 309 ~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
+||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|+
T Consensus 240 ~GglGl~psanig~~~a~FEp~H-GSAPdIAGk~iANP~a~IlS~amML~~lG~~~~A~~i~~AV~~vl~~G~ 311 (334)
T PRK08997 240 VGGLGMAPGANIGRDAAIFEAVH-GSAPDIAGKNLANPTSVILAAIQMLEYLGMPDKAERIRKAIVAVIEAGD 311 (334)
T ss_pred cCCCCcCcceeECCCceEEECCC-CchhhhCCCCccCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999 9999999999999999999999999999999999999999999999984
No 3
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.2e-106 Score=799.08 Aligned_cols=306 Identities=53% Similarity=0.848 Sum_probs=291.1
Q ss_pred CCCceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEecccCCCCCCCcc
Q psy9726 69 PEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGE 148 (381)
Q Consensus 69 ~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~v~~p~~~~~~~ 148 (381)
++++++|++|||||||||||+++++||++++++++|+++++|... ...|++++++|+++|++||||+++|.+ .+
T Consensus 27 ~~~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~~---~~lp~~~l~~~~~~da~L~Gavg~p~~---~~ 100 (360)
T PLN00123 27 DGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGDM---KKVPEEVLESIRRNKVCLKGGLATPVG---GG 100 (360)
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCCC---ccCCHHHHHHHHHCCEEEEccccCCCC---cC
Confidence 334689999999999999999999999999999999999998862 223799999999999999999999975 24
Q ss_pred cchhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHHH
Q psy9726 149 LQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDY 228 (381)
Q Consensus 149 ~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~ 228 (381)
.+++++.||++||||+|+||||++||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+|
T Consensus 101 ~~s~~l~LR~~ldLyaNvRP~k~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~~~g~~~~~~v~Tr~~~eRIar~AF~~ 180 (360)
T PLN00123 101 VSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEY 180 (360)
T ss_pred ccchHHHHHHHcCCEEEEEEeecCCCCCCccCCCCEEEEEeCCCceeccceeecCCCceEEEEEecHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999987777899999999999999999999999
Q ss_pred HHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhh
Q psy9726 229 ATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGL 308 (381)
Q Consensus 229 A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l 308 (381)
|++|+||+||++||+|||+.|||||+++|+||+++||+|+++|++||++||+||++|++||||||+|||||||||++|++
T Consensus 181 A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva~eyPdV~~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l 260 (360)
T PLN00123 181 AYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGI 260 (360)
T ss_pred HHhcCCCcEEEEECCccccchhhHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHh
Confidence 99987889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccCCCccccccCC-cCcc--ccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcC
Q psy9726 309 VGGAGVVAGASWSPECVVFEPGA-RHTY--SEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 309 ~GslGl~psanig~~~a~FEp~H-~GsA--pdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G 380 (381)
+||+||+||+|+|++++||||+| |||| |||||||+|||+|||||++|||+|||+.++|++|++||.+++++|
T Consensus 261 ~GglGl~pSanig~~~a~FEpvh~hGSA~~PdIAGk~iANP~a~IlS~amML~~lG~~~~A~~I~~AV~~~l~~G 335 (360)
T PLN00123 261 AGGTGVMPGGNVGADHAVFEQGASAGNVGNEKLVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEG 335 (360)
T ss_pred cCCcCccceEeeCCCceEEEecccCCCcCCccccCCCccChHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999976 5999 999999999999999999999999999999999999999999998
No 4
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.8e-107 Score=805.69 Aligned_cols=313 Identities=46% Similarity=0.746 Sum_probs=298.2
Q ss_pred cccCCCCceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCC
Q psy9726 65 HQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPD 142 (381)
Q Consensus 65 vfsa~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~ 142 (381)
-|+....+++|++|||||||||||+++++||++++++|+|+++++|...+++++. |++++++|+++|++||||+++|.
T Consensus 34 ~~~~~~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~ 113 (372)
T PLN00118 34 AFSSSSTPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPI 113 (372)
T ss_pred hhccCCCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCc
Confidence 3444455689999999999999999999999999999999999999998888754 69999999999999999999995
Q ss_pred CCCCcccchhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHH
Q psy9726 143 YSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIA 222 (381)
Q Consensus 143 ~~~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRia 222 (381)
. .+++|+|++|||+||||+||||||++||++++++++|||||||||||+|+|.|++..+++++++++|||+++|||+
T Consensus 114 ~---~~~~s~~~~LRk~ldLyaNvRPvr~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~~~gv~~~~~v~Tr~~~eRIa 190 (372)
T PLN00118 114 G---KGHRSLNLTLRKELGLYANVRPCYSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVA 190 (372)
T ss_pred c---ccccCchHHHHHHcCCeeeecccccCCCccCcccCceEEEEEecCCCcccceeeeccCCeEEEEEecCHHHHHHHH
Confidence 3 3467889999999999999999999999999999999999999999999999988778899999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHH
Q psy9726 223 KFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVD 302 (381)
Q Consensus 223 r~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILS 302 (381)
|+||+||++|++|+||++||+|||+.|||||+++|+|++++||||++++++||++||+||++|++||||||+||||||||
T Consensus 191 r~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILS 270 (372)
T PLN00118 191 EYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIIS 270 (372)
T ss_pred HHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccCcEEEEcCcccchhh
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCcccccccccCCC-ccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 303 NLASGLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 303 Dlaa~l~GslGl~psanig~~-~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
|++++++||+||+||+|+|++ .+||||+| ||||||||||+|||+|||||++|||+|||+.++|++|++||.++|++||
T Consensus 271 Dlaa~l~GglGlapSanig~~~~a~FEpvH-GSAPdIAGk~iANP~A~IlS~amML~~lG~~~~A~~I~~Av~~~l~~G~ 349 (372)
T PLN00118 271 DLCAGLIGGLGLTPSCNIGENGLALAEAVH-GSAPDIAGKNLANPTALLLSAVMMLRHLKLNEQAEQIHNAILNTIAEGK 349 (372)
T ss_pred HHHHHhcCCcccCcceeecCCCCeEEECCC-CChhhhCCCCCcCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999987 79999999 9999999999999999999999999999999999999999999999984
No 5
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-106 Score=793.40 Aligned_cols=301 Identities=37% Similarity=0.554 Sum_probs=290.6
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCCCcccc
Q psy9726 73 TKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSHTGELQ 150 (381)
Q Consensus 73 ~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~~~~~~ 150 (381)
++|++|||||||||||+++++||++++++++|+++++|.+++++++. |++++++|+++|++||||+++|. +
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------~ 74 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------A 74 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc-------c
Confidence 68999999999999999999999999999999999999999988754 69999999999999999999973 3
Q ss_pred hhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHHHHH
Q psy9726 151 TLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYAT 230 (381)
Q Consensus 151 s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~ 230 (381)
|.+++|||+||||+|+||||++||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||+
T Consensus 75 ~~~~~LR~~ldlyanvRP~r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~ 154 (330)
T PRK14025 75 DVIVKLRRILDTYANVRPVKSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEIADGVTVATRVITRKASERIFRFAFEMAK 154 (330)
T ss_pred chHHHHHHHcCCeEEEEEeecCCCCCCccCCcCEEEEEECCCceecCcccccCCCceEEeEeccHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999998777789999999999999999999999999
Q ss_pred hC----CCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhh
Q psy9726 231 KN----NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 306 (381)
Q Consensus 231 ~r----~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa 306 (381)
+| ++|+||++||+|||+.|||||+++|+||+++||+|++++++||++||+|+++|++||||||+|||||||||++|
T Consensus 155 ~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa 234 (330)
T PRK14025 155 RRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAA 234 (330)
T ss_pred hccccCCCCeEEEEECCCchhhhhHHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHH
Confidence 98 67889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 307 GLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 307 ~l~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
+++||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.+++++|.
T Consensus 235 ~l~GglGl~psanig~~~a~FEp~H-GSAPdiAGk~iANP~a~IlS~ammL~~lG~~~~A~~I~~Av~~vl~~g~ 308 (330)
T PRK14025 235 GLVGGLGLAPSANIGDKYGLFEPVH-GSAPDIAGKGIANPTATILTAVLMLRHLGENEEADKVEKALEEVLALGL 308 (330)
T ss_pred HhcCCCCcccceeeCCCcceeEcCC-CCchhhCCCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999873
No 6
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-106 Score=796.01 Aligned_cols=309 Identities=30% Similarity=0.471 Sum_probs=289.4
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHc---CCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC
Q psy9726 71 GRTKCTLIPGDGVGPELVYSVQEVFKAA---NVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH 145 (381)
Q Consensus 71 ~~~~IavipGDGIGpEV~~aa~~VL~a~---~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~ 145 (381)
++++|++|||||||||||+++++||+++ +++|+|+++++|.+++++++. |++++++|+++|++||||+++|..+.
T Consensus 3 k~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~ 82 (344)
T PRK03437 3 KTMKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS 82 (344)
T ss_pred ceEEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC
Confidence 4689999999999999999999999977 889999999999999988754 69999999999999999999996421
Q ss_pred CcccchhhHHHHHhhcceeecEEeeecCCCCCCC---CCccEEEeccCCCceeeccccee----eCCeEeeeeeecHHHH
Q psy9726 146 TGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH---SNVDCVIIREQTEGEYSALEHEC----VPGVVECLKIVTAEKS 218 (381)
Q Consensus 146 ~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~---~~iDivIvREnteG~Y~g~e~~~----~~~va~~~~~~Tr~~~ 218 (381)
....++.+++|||+||||+|+||||++||+++|+ +++||+||||||||+|+|.+++. .+++|+++++|||+++
T Consensus 83 ~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~a~~~~~~Tr~~~ 162 (344)
T PRK03437 83 GVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALRVGTPHEVATEVSVNTAFGV 162 (344)
T ss_pred CCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccccCCCcceeEEEEEEecHHHH
Confidence 1124678999999999999999999999999987 68999999999999999987543 2457889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcch
Q psy9726 219 RRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYG 298 (381)
Q Consensus 219 eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~G 298 (381)
|||+|+||+||++|++|+||++||+|||+.|++||+++|+|++++||||++++++||++|||||++|++||||||+||||
T Consensus 163 ~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfG 242 (344)
T PRK03437 163 ERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFG 242 (344)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccCcEEEEcccch
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhcCCcccccccccCCC---ccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHH
Q psy9726 299 NIVDNLASGLVGGAGVVAGASWSPE---CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNR 375 (381)
Q Consensus 299 DILSDlaa~l~GslGl~psanig~~---~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~ 375 (381)
|||||++++++||+|++||+|+|++ ++||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.+
T Consensus 243 DILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~H-GSAPdiAGk~iANP~a~IlS~amML~~lg~~~~a~~I~~Av~~ 321 (344)
T PRK03437 243 DIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVH-GSAPDIAGQGIADPTAAILSVALLLDHLGEEDAAARIEAAVEA 321 (344)
T ss_pred hhhhHHHHHhcCCccccceeeecCCCCcceeEecCC-CCchhhcCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999864 39999999 9999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy9726 376 VLKAG 380 (381)
Q Consensus 376 ~l~~G 380 (381)
++++|
T Consensus 322 ~l~~g 326 (344)
T PRK03437 322 DLAER 326 (344)
T ss_pred HHHhc
Confidence 99985
No 7
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=9e-106 Score=791.32 Aligned_cols=310 Identities=59% Similarity=0.927 Sum_probs=292.4
Q ss_pred CCceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEecccCCCCCCCccc
Q psy9726 70 EGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGEL 149 (381)
Q Consensus 70 ~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~v~~p~~~~~~~~ 149 (381)
|++++|++|||||||||||+++++||++++++|+|+++++|.+....+..|++++++|+++|++||||+++|... ..+
T Consensus 1 ~g~~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~--~~~ 78 (333)
T TIGR00175 1 GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQTDGKTEIPDEAVESIKRNKVALKGPLETPIGK--GGH 78 (333)
T ss_pred CCcEEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChhhccCCcCCHHHHHHHHHCCEEEEcccCCcccc--ccc
Confidence 567999999999999999999999999999999999999998633222237999999999999999999998531 126
Q ss_pred chhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHHHH
Q psy9726 150 QTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYA 229 (381)
Q Consensus 150 ~s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 229 (381)
+|++++||++||||+|+||||++||++++++++||+||||||||+|+|.|++..+++++++++|||+++|||+|+||+||
T Consensus 79 ~s~~~~lR~~ldlyanvRP~k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~~~~~~~~~~~~Tr~~~eRi~r~Af~~A 158 (333)
T TIGR00175 79 RSLNVALRKELDLYANVVHCKSLPGFKTRHEDVDIVIIRENTEGEYSGLEHESVPGVVESLKVITRDKSERIARYAFEYA 158 (333)
T ss_pred cchhHHHHHHcCCEEEeEEecCCCCCCCCCCCcCEEEEEEeCCCcccceeEeccCCeEEEEEecCHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999998777778999999999999999999999999
Q ss_pred HhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhc
Q psy9726 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLV 309 (381)
Q Consensus 230 ~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~ 309 (381)
++|++|+||++||+|||+.||++|+++|+|++++||+|+++|++||+++|+||++|++||||||+|||||||||++++++
T Consensus 159 ~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~ 238 (333)
T TIGR00175 159 RKNGRKKVTAVHKANIMKLADGLFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLV 238 (333)
T ss_pred HhcCCCeEEEEECCccchhhHHHHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhc
Confidence 99977889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 310 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 310 GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
||+||+||+|+|++.+||||+||||||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|+
T Consensus 239 GslGl~pSanig~~~a~fEp~~hGSApdiaGk~iaNP~a~Ils~ammL~~lG~~~~a~~i~~Av~~~l~~G~ 310 (333)
T TIGR00175 239 GGPGLVPGANIGRDYAVFEPGVRHTGPDIAGQNIANPTALILSSVMMLNHLGLKEHADRIQKAVLSTIAEGK 310 (333)
T ss_pred CCcccCceeEEcCCCceEeccCCCCchhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999997779999999999999999999999999999999999999999999999983
No 8
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.1e-105 Score=813.31 Aligned_cols=305 Identities=39% Similarity=0.633 Sum_probs=295.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCC--C-hHHHHHHHHhcCcEEEecccCCCCCCCcc
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--P-LETVADSIARNGICLKGVLSTPDYSHTGE 148 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~--~-~~etl~~i~~~daiL~G~v~~p~~~~~~~ 148 (381)
+++|+||||||||||||+++++||++++.+|+|+++++|.+.|++++ . |++++++|+++|++||||+++|.+ ++
T Consensus 4 ~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~---~~ 80 (482)
T PRK09222 4 KTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG---GG 80 (482)
T ss_pred cceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc---cC
Confidence 58999999999999999999999999999999999999999998863 3 699999999999999999999974 35
Q ss_pred cchhhHHHHHhhcceeecEEeeec-CCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHH
Q psy9726 149 LQTLNMKLRKALDLYANVVHVKSL-PGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFD 227 (381)
Q Consensus 149 ~~s~~~~LR~~ldlyanvRPv~~~-pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe 227 (381)
++|+|++||++|||||||||||++ ||++++++++|+|||||||||+|+|+|++..+++++++++|||+++|||+|+||+
T Consensus 81 ~~s~~~~LRk~ldLYaNvRP~r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~~~~~~~~~k~iTr~~~eRI~r~AFe 160 (482)
T PRK09222 81 YKSLNVTLRKTLGLYANVRPCVSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQTPDVYQCLKLISRPGSEKIIRYAFE 160 (482)
T ss_pred ccchHHHHHHHcCCeEEeeeEEecCCCCCCCCCCcCEEEEEeccCCeeccceeecCCCeeeEeeccCHHHHHHHHHHHHH
Confidence 788999999999999999999999 9999999999999999999999999998877889999999999999999999999
Q ss_pred HHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhh
Q psy9726 228 YATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASG 307 (381)
Q Consensus 228 ~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~ 307 (381)
||++|+||+||++||+|||+.|||||+++|+|++++||||+++|++||++||+|+++|++||||||+|||||||||++|+
T Consensus 161 ~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~ 240 (482)
T PRK09222 161 YARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAE 240 (482)
T ss_pred HHHhcCCCeEEEEECCCcccccchHHHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcC
Q psy9726 308 LVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 308 l~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G 380 (381)
++||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|
T Consensus 241 l~GslGlapSanig~~~amFEpvH-GSAPdIAGk~iANP~a~IlSaamML~hlG~~~~A~~I~~Av~~tl~~G 312 (482)
T PRK09222 241 ISGSVGLAGSANIGEEYAMFEAVH-GSAPDIAGKNIANPSGLLNAAVMMLVHIGQFDIAELIENAWLKTLEDG 312 (482)
T ss_pred hcCCcccccceecCCCceeeECCC-CCchhhcCCCccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999 999999999999999999999999999999999999999999999987
No 9
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=6.4e-105 Score=807.17 Aligned_cols=303 Identities=36% Similarity=0.593 Sum_probs=292.8
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCC--C-hHHHHHHHHhcCcEEEecccCCCCCCCcccc
Q psy9726 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--P-LETVADSIARNGICLKGVLSTPDYSHTGELQ 150 (381)
Q Consensus 74 ~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~--~-~~etl~~i~~~daiL~G~v~~p~~~~~~~~~ 150 (381)
+|++|||||||||||+++++||++++.+|+|+++++|...+++++ . |++++++|+++|++||||+++|.+ .+.+
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~---~~~~ 78 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQG---GGHK 78 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCc---cCcc
Confidence 699999999999999999999999999999999999999998763 3 699999999999999999999975 3567
Q ss_pred hhhHHHHHhhcceeecEEeeec-CCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHHHH
Q psy9726 151 TLNMKLRKALDLYANVVHVKSL-PGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYA 229 (381)
Q Consensus 151 s~~~~LR~~ldlyanvRPv~~~-pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A 229 (381)
|+|++|||+||||||+||||++ ||++++++++|+|||||||||+|+|.|++..+++++++++|||+++|||+|+||+||
T Consensus 79 s~~~~LRk~ldLYANvRPv~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~~~~~~~~kviTr~g~eRI~r~AFe~A 158 (473)
T TIGR02924 79 SLNVTLRKTLGLYANIRPCVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQTPDTYECTKLITRSGSEKICRYAFEYA 158 (473)
T ss_pred cHHHHHHHHcCCeEEEEEeeccCCCCCCccCCcCEEEEEeccCceecCceeeccCChheEeEecCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999 999999999999999999999999999887778899999999999999999999999
Q ss_pred HhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhc
Q psy9726 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLV 309 (381)
Q Consensus 230 ~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~ 309 (381)
++|+||+||++||+|||+.|||||+++|+|++++||+|+++|++||+++|+|+++|++||||||+|||||||||++|+++
T Consensus 159 ~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva~eyPdI~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~ 238 (473)
T TIGR02924 159 RKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIAAEYPDIESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEIS 238 (473)
T ss_pred HhcCCCeEEEEECCccccccchhHHHHHHHHHhhCCCcEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhc
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcC
Q psy9726 310 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 310 GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G 380 (381)
||+||+||+|+|++++||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|
T Consensus 239 GslGlapSaNiG~~~amFEpvH-GSAPdIAGk~iANP~a~IlSaamML~hLG~~~~A~~I~~AV~~vl~~G 308 (473)
T TIGR02924 239 GSVGLAGSANIGEEYAMFEAVH-GSAPDIAGQNIANPSGLLNAAIQMLVHIGQSDIAQLIYNAWLKTLEDG 308 (473)
T ss_pred CCcCcccceecCCCcceeecCC-CchhhhCCCCccChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999987
No 10
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-104 Score=786.55 Aligned_cols=307 Identities=26% Similarity=0.437 Sum_probs=286.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHc-----CCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCC
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAA-----NVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYS 144 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~-----~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~ 144 (381)
.++|++|||||||||||+++++||+++ +++++|+++++|.+++++++. |++++++|+++|++||||+++|.|.
T Consensus 3 ~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~ 82 (352)
T PRK08194 3 QFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLV 82 (352)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcC
Confidence 589999999999999999999999976 579999999999999988754 6999999999999999999999742
Q ss_pred CC-cccchhhHHHHHhhcceeecEEeeecCCCCCCC---CCccEEEeccCCCceeeccccee---eCCeEeeeeeecHHH
Q psy9726 145 HT-GELQTLNMKLRKALDLYANVVHVKSLPGVKVRH---SNVDCVIIREQTEGEYSALEHEC---VPGVVECLKIVTAEK 217 (381)
Q Consensus 145 ~~-~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~---~~iDivIvREnteG~Y~g~e~~~---~~~va~~~~~~Tr~~ 217 (381)
.. .+.++++++|||+||||||+||||++||+++|+ +++|||||||||||+|+|.++.. ..++|+++++|||++
T Consensus 83 ~~~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~g~~~~a~~~~~~Tr~~ 162 (352)
T PRK08194 83 PDHISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHRGEDEIAIQNAVFTRKG 162 (352)
T ss_pred CCCCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccCCccceEEEEEEeeHHH
Confidence 11 233456999999999999999999999999987 68999999999999999987553 235789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcc
Q psy9726 218 SRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY 297 (381)
Q Consensus 218 ~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~ 297 (381)
+|||+|+||+||++| +++||++||+|||+.|++||+++|+|++++||||++++++||++|||||++|++||||||+|||
T Consensus 163 ~eRI~r~Af~~A~~r-~~~Vt~v~KaNvl~~t~~lf~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~Nlf 241 (352)
T PRK08194 163 TERAMRYAFELAAKR-RKHVTSATKSNGIVHSMPFWDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEFDVIVASNLF 241 (352)
T ss_pred HHHHHHHHHHHHHHc-CCcEEEEeCcchhhhhHHHHHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhCcEEEEccch
Confidence 999999999999998 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhcCCcccccccccCCC--c-cccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHH
Q psy9726 298 GNIVDNLASGLVGGAGVVAGASWSPE--C-VVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVN 374 (381)
Q Consensus 298 GDILSDlaa~l~GslGl~psanig~~--~-a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~ 374 (381)
||||||++++++||+||+||+|+|++ . +||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++||.
T Consensus 242 GDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~H-GSAPdiAGk~iANP~a~IlS~amML~~lg~~~~A~~i~~Av~ 320 (352)
T PRK08194 242 GDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVH-GSAPDIAGKGIANPIGQIWTAKLMLDHFGEEELGSHLLDVIE 320 (352)
T ss_pred HHHHhHHHHHhcCCccccceeeecCCCCcceEEECCC-CCchhhCCCCcCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 99999999999999999999999954 4 9999999 999999999999999999999999999999999999999999
Q ss_pred HHHHcC
Q psy9726 375 RVLKAG 380 (381)
Q Consensus 375 ~~l~~G 380 (381)
+++++|
T Consensus 321 ~~l~~g 326 (352)
T PRK08194 321 DVTEDG 326 (352)
T ss_pred HHHHcC
Confidence 999987
No 11
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=2.2e-104 Score=785.45 Aligned_cols=307 Identities=31% Similarity=0.492 Sum_probs=286.6
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHc-----CCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCC
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAA-----NVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYS 144 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~-----~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~ 144 (381)
+|+|++|||||||||||+++++||+++ +++|+|+++++|++++++++. |++++++|+++|++||||+++|.+.
T Consensus 3 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~ 82 (352)
T TIGR02089 3 QYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALV 82 (352)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCC
Confidence 579999999999999999999999976 489999999999999988753 6999999999999999999999631
Q ss_pred -CCcccchhhHHHHHhhcceeecEEeeecCCCCCCC-----CCccEEEeccCCCceeecccceee----CCeEeeeeeec
Q psy9726 145 -HTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH-----SNVDCVIIREQTEGEYSALEHECV----PGVVECLKIVT 214 (381)
Q Consensus 145 -~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~-----~~iDivIvREnteG~Y~g~e~~~~----~~va~~~~~~T 214 (381)
...+.++++++|||+||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.. ++.|+++++||
T Consensus 83 ~~~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~~~~~~~~a~~~~~~t 162 (352)
T TIGR02089 83 PDHISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIHRGTDEEVATQNAIFT 162 (352)
T ss_pred CCccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCcccccccccccCCccceeEEEeEEec
Confidence 11244567999999999999999999999999987 589999999999999999875432 25788999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcC
Q psy9726 215 AEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMP 294 (381)
Q Consensus 215 r~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~ 294 (381)
|+++|||+|+||+||++| +|+||++||+|||+.|++||+++|+|++++||+|+++|+|||++||||+++|++||||||+
T Consensus 163 r~~~eRi~r~Af~~A~~r-r~kVt~v~KaNvl~~t~~lf~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~fDVivt~ 241 (352)
T TIGR02089 163 RKGVERIMRFAFELAQKR-RKHLTSATKSNGIRHSMPFWDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETFDVIVAS 241 (352)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCEEEEeCCcchhhhhHHHHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhCcEEEec
Confidence 999999999999999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHhhhhhcCCcccccccccCCC---ccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHH
Q psy9726 295 NLYGNIVDNLASGLVGGAGVVAGASWSPE---CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRN 371 (381)
Q Consensus 295 Nl~GDILSDlaa~l~GslGl~psanig~~---~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~ 371 (381)
|||||||||++++++||+||+||+|+|++ .+||||+| ||||||||||+|||+|+|||++|||+|||+.++|++|++
T Consensus 242 NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~H-GSAPdiAGk~iANP~a~Ils~amML~~lg~~~~A~~I~~ 320 (352)
T TIGR02089 242 NLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVH-GSAPDIAGKGIANPIGAIWTAAMMLEHLGEKEAGAKIMD 320 (352)
T ss_pred ccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCC-CCchhhcCCCccCcHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 99999999999999999999999999864 38999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC
Q psy9726 372 AVNRVLKAG 380 (381)
Q Consensus 372 Av~~~l~~G 380 (381)
||.+++++|
T Consensus 321 Av~~~l~~g 329 (352)
T TIGR02089 321 AIERVTAAG 329 (352)
T ss_pred HHHHHHHcC
Confidence 999999987
No 12
>KOG0785|consensus
Probab=100.00 E-value=1.2e-104 Score=754.27 Aligned_cols=312 Identities=46% Similarity=0.769 Sum_probs=298.8
Q ss_pred ccCCCCceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCC--CChHHHHHHHHhcCcEEEecccCCCC
Q psy9726 66 QSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMS--APLETVADSIARNGICLKGVLSTPDY 143 (381)
Q Consensus 66 fsa~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~--~~~~etl~~i~~~daiL~G~v~~p~~ 143 (381)
|....+++++++||||||||||++++++|++++.++|+|+++++....-..+ ..|++++++++++.+.||||+.+|.+
T Consensus 29 ~~~~~~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~ 108 (365)
T KOG0785|consen 29 FNSATKTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIG 108 (365)
T ss_pred ccCCCCceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccc
Confidence 3444557899999999999999999999999999999999999887543323 33799999999999999999999997
Q ss_pred CCCcccchhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHH
Q psy9726 144 SHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAK 223 (381)
Q Consensus 144 ~~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar 223 (381)
++++|+|++|||+|+||||||||++++|.++||+++|+|+|||||||+|+|+||...+||++++|++|+..++||++
T Consensus 109 ---kgh~S~nl~LRK~f~LyANVRPc~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vvpGVvqsiK~IT~~AS~Ria~ 185 (365)
T KOG0785|consen 109 ---KGHRSLNLALRKEFGLYANVRPCKSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVVPGVVQSIKLITEAASRRIAE 185 (365)
T ss_pred ---cccccHHHHHHHHhchhccceecccccCCcCCCCCceEEEEecCCccccccceeeccccHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHH
Q psy9726 224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDN 303 (381)
Q Consensus 224 ~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSD 303 (381)
|||+||++++|++||++||+|||+.|||||+++|+|++++||||.++++|+|+||++|+++|+.|||+|++|||||||||
T Consensus 186 ~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a~~y~dI~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD 265 (365)
T KOG0785|consen 186 YAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVAKKYPDIKFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSD 265 (365)
T ss_pred HHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHhhhCCccchhHHHHHHHHHHHhcCchhceEEeccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 304 LASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 304 laa~l~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
+||+|+||||++||+|||++.++|||+| ||||||||||+|||+|++||++|||+|+|+.++|++|++||.++|++||
T Consensus 266 ~~agLvGgLGltPS~NiG~g~~~~e~vH-GsAPDIAGkdlANPtAlllS~vmMLrhm~l~~~A~~I~~Av~~ti~eg~ 342 (365)
T KOG0785|consen 266 LCAGLVGGLGLTPSANIGDGIVIFEAVH-GSAPDIAGKDLANPTALLLSAVMMLRHMGLNDQADQIESAVFKTIAEGK 342 (365)
T ss_pred HHHHhccCcccCCCcccCCCeeeeeccc-CCCcccccCCcCCcHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999899999999 9999999999999999999999999999999999999999999999986
No 13
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=4.2e-104 Score=791.10 Aligned_cols=306 Identities=28% Similarity=0.438 Sum_probs=284.9
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHc----CCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH 145 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~----~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~ 145 (381)
.|+|++|||||||||||+++++||+++ +++|+|+++++|++++++++. |++++++|+++|++||||+++|+++.
T Consensus 46 ~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~~ 125 (409)
T PLN02329 46 RYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWDK 125 (409)
T ss_pred eEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCCC
Confidence 689999999999999999999999976 589999999999999988754 69999999999999999999997632
Q ss_pred C-c--ccchhhHHHHHhhcceeecEEeeecCCCCC--CC-----CCccEEEeccCCCceeeccccee-----eCCeEeee
Q psy9726 146 T-G--ELQTLNMKLRKALDLYANVVHVKSLPGVKV--RH-----SNVDCVIIREQTEGEYSALEHEC-----VPGVVECL 210 (381)
Q Consensus 146 ~-~--~~~s~~~~LR~~ldlyanvRPv~~~pg~~~--~~-----~~iDivIvREnteG~Y~g~e~~~-----~~~va~~~ 210 (381)
. . ..++++++|||+||||+|+||||++||+++ |+ +++|||||||||||+|+|.++.. ..++++++
T Consensus 126 ~~~~~~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~~~~~~~~a~~~ 205 (409)
T PLN02329 126 NEKHLRPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITINENGEEVGVST 205 (409)
T ss_pred CcccccccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceecccCCceeEEEe
Confidence 1 1 234679999999999999999999999985 54 68999999999999999987432 24588999
Q ss_pred eeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccE
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDV 290 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdV 290 (381)
++|||+++|||+|+||+||++|+ ++||++||+|||+ +++||+++|+||+++||+|++++++||++|||||++|++|||
T Consensus 206 ~~iTr~~~eRI~r~AFe~A~~r~-~kVT~v~KaNVl~-t~~lf~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~FDV 283 (409)
T PLN02329 206 EIYAAHEIDRIARVAFETARKRR-GKLCSVDKANVLD-ASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDT 283 (409)
T ss_pred EEecHHHHHHHHHHHHHHHHHcC-CeEEEEECCCCcc-chHHHHHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhCCE
Confidence 99999999999999999999984 5999999999999 899999999999999999999999999999999999999999
Q ss_pred EEcCCcchhHHHHhhhhhcCCcccccccccCCC-ccccccCCcCccccccCCCccChhHHHHHHHHHHhh-cCchHHHHH
Q psy9726 291 MVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDM 368 (381)
Q Consensus 291 ivt~Nl~GDILSDlaa~l~GslGl~psanig~~-~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~h-lg~~~~A~~ 368 (381)
|||+|||||||||++++++||+||+||+|+|++ ++||||+| ||||||||||+|||+|+|||++|||+| ||+.++|++
T Consensus 284 IVt~NLfGDILSDlaa~l~GglGlaPSanig~~~~a~FEpvH-GSAPdIAGk~iANP~A~ILS~amML~~~Lg~~~~A~~ 362 (409)
T PLN02329 284 IVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIH-GSAPDIAGQDKANPLATILSAAMLLKYGLGEEKAAKR 362 (409)
T ss_pred EEEcCcccccccHHHHHhcCCcccCceeecCCCCceeeeccC-CCchhhcCCcccChHHHHHHHHHHHhhhCCCHHHHHH
Confidence 999999999999999999999999999999987 69999999 999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHcC
Q psy9726 369 IRNAVNRVLKAG 380 (381)
Q Consensus 369 i~~Av~~~l~~G 380 (381)
|++||.++|++|
T Consensus 363 I~~AV~~vl~~g 374 (409)
T PLN02329 363 IEDAVVDALNKG 374 (409)
T ss_pred HHHHHHHHHHcC
Confidence 999999999986
No 14
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=1.3e-102 Score=771.99 Aligned_cols=304 Identities=33% Similarity=0.520 Sum_probs=281.7
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHc----CCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCCC-
Q psy9726 74 KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSHT- 146 (381)
Q Consensus 74 ~IavipGDGIGpEV~~aa~~VL~a~----~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~~- 146 (381)
+|++|||||||||||+++++||+++ +++|+|+++++|.+.+++++. |++++++|+++|++||||+++|.++..
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999999976 689999999999999888754 699999999999999999999975321
Q ss_pred c--ccchhhHHHHHhhcceeecEEeeecCCCCC--CC-----CCccEEEeccCCCceeeccccee-e---CCeEeeeeee
Q psy9726 147 G--ELQTLNMKLRKALDLYANVVHVKSLPGVKV--RH-----SNVDCVIIREQTEGEYSALEHEC-V---PGVVECLKIV 213 (381)
Q Consensus 147 ~--~~~s~~~~LR~~ldlyanvRPv~~~pg~~~--~~-----~~iDivIvREnteG~Y~g~e~~~-~---~~va~~~~~~ 213 (381)
. ...+.+++|||+||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++. . +++++++++|
T Consensus 81 ~~~~~~~~~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~~~~ 160 (349)
T TIGR00169 81 RDQRPEQGLLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAGGEGEAWDTEVY 160 (349)
T ss_pred ccccchhhHHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCCCcceEEEEEEe
Confidence 1 113349999999999999999999999975 44 68999999999999999997632 2 3688999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEc
Q psy9726 214 TAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVM 293 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt 293 (381)
||.++|||+|+||+||++|+ ++||++||+|+|+ ++++|+++|+|++++||+|++++++||+++|+|+++|++||||||
T Consensus 161 Tr~~~eRI~r~AF~~A~~r~-~~Vt~v~KaNvlk-t~glf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~fDViv~ 238 (349)
T TIGR00169 161 TKPEIERIARVAFEMARKRR-KKVTSVDKANVLE-SSRLWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQFDVVVT 238 (349)
T ss_pred eHHHHHHHHHHHHHHHHHcC-CcEEEEECCcccc-hhHHHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCceEEEE
Confidence 99999999999999999985 4999999999999 899999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhhhcCCcccccccccCC-CccccccCCcCccccccCCCccChhHHHHHHHHHHhh-cCchHHHHHHHH
Q psy9726 294 PNLYGNIVDNLASGLVGGAGVVAGASWSP-ECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRN 371 (381)
Q Consensus 294 ~Nl~GDILSDlaa~l~GslGl~psanig~-~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~h-lg~~~~A~~i~~ 371 (381)
+|||||||||++++++||+|++||+|+|+ +++||||+| ||||||||||+|||+|+|||++|||+| ||+.++|++|++
T Consensus 239 ~NlfGDILSDlaa~l~GglGlapSanig~~~~a~FEp~H-GSAPdiAGk~iANP~a~IlS~amML~~~lg~~~~a~~i~~ 317 (349)
T TIGR00169 239 GNIFGDILSDEASVIPGSLGMLPSASLGSDGFGLFEPVH-GSAPDIAGKGIANPIAQILSAAMMLRYSFNLEEAADAIEA 317 (349)
T ss_pred cCcccchhhHHHHHhcCCCCCCceEEECCCCCEEEECCC-CChhHhcCCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999999999999995 589999999 999999999999999999999999999 899999999999
Q ss_pred HHHHHHHcC
Q psy9726 372 AVNRVLKAG 380 (381)
Q Consensus 372 Av~~~l~~G 380 (381)
||.++|++|
T Consensus 318 Av~~~l~~g 326 (349)
T TIGR00169 318 AVKKVLAEG 326 (349)
T ss_pred HHHHHHHcC
Confidence 999999986
No 15
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-102 Score=783.58 Aligned_cols=304 Identities=30% Similarity=0.481 Sum_probs=285.6
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHHc---C----CCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCC
Q psy9726 73 TKCTLIPGDGVGPELVYSVQEVFKAA---N----VPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDY 143 (381)
Q Consensus 73 ~~IavipGDGIGpEV~~aa~~VL~a~---~----~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~ 143 (381)
+ |++|||||||||||+++++||+++ + ++|+|.++++|.+++++++. |++++++|+++|++||||+++|..
T Consensus 25 ~-I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~ 103 (412)
T PRK06451 25 I-ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIG 103 (412)
T ss_pred E-EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCC
Confidence 5 999999999999999999999965 1 48999999999999988854 699999999999999999999953
Q ss_pred CCCcccchhhHHHHHhhcceeecEEeeecCCCCCCC---CCccEEEeccCCCceeeccccee------------------
Q psy9726 144 SHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH---SNVDCVIIREQTEGEYSALEHEC------------------ 202 (381)
Q Consensus 144 ~~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~---~~iDivIvREnteG~Y~g~e~~~------------------ 202 (381)
.+++|+|++|||+||||||+||||++||+++|+ +++|||||||||||+|+|.+++.
T Consensus 104 ---~~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~ 180 (412)
T PRK06451 104 ---KGWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGV 180 (412)
T ss_pred ---cCCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccccccccc
Confidence 356789999999999999999999999999987 68999999999999999998421
Q ss_pred --eCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHh-hCCC-------------
Q psy9726 203 --VPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPK------------- 266 (381)
Q Consensus 203 --~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-eypd------------- 266 (381)
..++++++++||+.++|||+|+||+||++|++|+||+|||+|||+.|||+|+++|+|+++ ||||
T Consensus 181 ~~~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~ 260 (412)
T PRK06451 181 EVEDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYN 260 (412)
T ss_pred ccccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhccc
Confidence 124577999999999999999999999999888999999999999999999999999996 8995
Q ss_pred -------eEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCccccccCCcCcccccc
Q psy9726 267 -------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAV 339 (381)
Q Consensus 267 -------I~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~a~FEp~H~GsApdia 339 (381)
|+++|++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+| |||||||
T Consensus 261 ~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~~alFEpvH-GSAPdiA 339 (412)
T PRK06451 261 GVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDTGGMFEAIH-GTAPKYA 339 (412)
T ss_pred cccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCCceeECCC-CCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 340 GKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 340 Gk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
|||+|||+|+|||++|||+|||+.++|++|++||.++|++|.
T Consensus 340 Gk~iANP~a~IlS~amML~~lg~~~~A~~I~~Av~~vl~~G~ 381 (412)
T PRK06451 340 GKNVANPTGIIKGGELMLRFMGWDKAADLIDKAIMESIKQKK 381 (412)
T ss_pred CCCCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999873
No 16
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2e-101 Score=765.14 Aligned_cols=305 Identities=33% Similarity=0.497 Sum_probs=284.7
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHc----CCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH 145 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~----~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~ 145 (381)
+++|++|||||||||||+++++||+++ +++|+|.++++|.+++++++. |++++++|+++|++||||+++|.++.
T Consensus 2 ~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~ 81 (358)
T PRK00772 2 TYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDN 81 (358)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCC
Confidence 379999999999999999999999976 689999999999999888754 69999999999999999999997532
Q ss_pred C----cccchhhHHHHHhhcceeecEEeeecCCCCC--CC-----CCccEEEeccCCCceeecccceee----CCeEeee
Q psy9726 146 T----GELQTLNMKLRKALDLYANVVHVKSLPGVKV--RH-----SNVDCVIIREQTEGEYSALEHECV----PGVVECL 210 (381)
Q Consensus 146 ~----~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~--~~-----~~iDivIvREnteG~Y~g~e~~~~----~~va~~~ 210 (381)
. .+.+| +++|||+||||+|+||||++||+++ |+ +++|+|||||||||+|+|.+++.. .++++++
T Consensus 82 ~~~~~~~~~~-~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~~~~~~~a~~~ 160 (358)
T PRK00772 82 LPPDVRPERG-LLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREGLGGEERAFDT 160 (358)
T ss_pred CCccCCChhh-HHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccCCCCceeEEEE
Confidence 1 13456 9999999999999999999999986 55 389999999999999999976532 3578899
Q ss_pred eeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccE
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDV 290 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdV 290 (381)
++|||+++|||+|+||+||++| +++||++||+|+|+ ++++|+++|+|+++|||+|++++++||+++|+|+++|++|||
T Consensus 161 ~~iTr~~~~Ri~r~Af~~A~~r-~~~Vt~v~KaNvl~-~~glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~fDV 238 (358)
T PRK00772 161 MVYTREEIERIARVAFELARKR-RKKVTSVDKANVLE-SSRLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQFDV 238 (358)
T ss_pred EEeeHHHHHHHHHHHHHHHHHc-CCcEEEEECccccc-cchHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccCeE
Confidence 9999999999999999999998 46999999999999 789999999999999999999999999999999999999999
Q ss_pred EEcCCcchhHHHHhhhhhcCCcccccccccCCC-ccccccCCcCccccccCCCccChhHHHHHHHHHHhh-cCchHHHHH
Q psy9726 291 MVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE-CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDM 368 (381)
Q Consensus 291 ivt~Nl~GDILSDlaa~l~GslGl~psanig~~-~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~h-lg~~~~A~~ 368 (381)
|||+|||||||||++++++||+||+||+|+|++ .+||||+| ||||||||||+|||+|+|||++|||+| ||+.++|++
T Consensus 239 iv~~NlfGDIlSDlaa~l~GglGl~psanig~~~~a~FEp~H-GSApdiAGk~~aNP~a~Ils~ammL~~~lg~~~~a~~ 317 (358)
T PRK00772 239 IVTENLFGDILSDEAAMLTGSLGMLPSASLGESGPGLYEPIH-GSAPDIAGKGIANPIATILSAAMMLRYSLGLEEAADA 317 (358)
T ss_pred EeecCcccccccHHHHHhcCCCCCCcceEeCCCCceeeecCC-CchhhhcCCCCcCCHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999976 79999999 999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHcC
Q psy9726 369 IRNAVNRVLKAG 380 (381)
Q Consensus 369 i~~Av~~~l~~G 380 (381)
|++||.+++++|
T Consensus 318 i~~Av~~~l~~g 329 (358)
T PRK00772 318 IEAAVEKVLAQG 329 (358)
T ss_pred HHHHHHHHHHcC
Confidence 999999999987
No 17
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-101 Score=776.77 Aligned_cols=302 Identities=29% Similarity=0.473 Sum_probs=282.8
Q ss_pred EEEecCCCchhHHHHHHHHHHHHc---C----CCcceEEEecccccCCCC-C--C-hHHHHHHHHhcCcEEEecccCCCC
Q psy9726 75 CTLIPGDGVGPELVYSVQEVFKAA---N----VPVDFEPFFFSEVNPTMS-A--P-LETVADSIARNGICLKGVLSTPDY 143 (381)
Q Consensus 75 IavipGDGIGpEV~~aa~~VL~a~---~----~~i~~~~~~~g~~~~~~~-~--~-~~etl~~i~~~daiL~G~v~~p~~ 143 (381)
|++|||||||||||+++++||+++ + .+|+|+++++|..+++++ . . |++++++|+++|++||||+++|..
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999999975 2 489999999999998876 3 4 699999999999999999999953
Q ss_pred CCCcccchhhHHHHHhhcceeecEEeeecCCCCCCC---CCccEEEeccCCCceeeccccee------------------
Q psy9726 144 SHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH---SNVDCVIIREQTEGEYSALEHEC------------------ 202 (381)
Q Consensus 144 ~~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~---~~iDivIvREnteG~Y~g~e~~~------------------ 202 (381)
.+++|+|++||++||||||+||||++||+++|+ +++|||||||||||+|+|.++..
T Consensus 102 ---~~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~~~ 178 (409)
T PRK07006 102 ---GGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEMGV 178 (409)
T ss_pred ---cCccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeeccccccCc
Confidence 346788999999999999999999999999987 68999999999999999997421
Q ss_pred -----eCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHh-hC------------
Q psy9726 203 -----VPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LY------------ 264 (381)
Q Consensus 203 -----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-ey------------ 264 (381)
..+.++++++|||+++|||+|+||+||++|++|+||++||+|||+.|||||++|+.|+++ +|
T Consensus 179 ~~~~~~~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~~ 258 (409)
T PRK07006 179 KKIRFPETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWDK 258 (409)
T ss_pred ccccccccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhccccccc
Confidence 123567999999999999999999999999888999999999999999999998889997 78
Q ss_pred -------CCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCccccccCCcCcccc
Q psy9726 265 -------PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSE 337 (381)
Q Consensus 265 -------pdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~a~FEp~H~GsApd 337 (381)
|+|++++++||++|||||++|++||||||+|||||||||++|+++||+||+||+|+|++++||||+| |||||
T Consensus 259 ~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~~a~FEpvH-GSAPd 337 (409)
T PRK07006 259 IKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDGHAIFEATH-GTAPK 337 (409)
T ss_pred cccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCCceEEECCC-Ccchh
Confidence 8999999999999999999999999999999999999999999999999999999999899999999 99999
Q ss_pred ccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcC
Q psy9726 338 AVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 338 iaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G 380 (381)
|||||+|||+|+|||++|||+|||+.++|++|++||.++|++|
T Consensus 338 iAGk~iANP~a~IlS~amML~~lG~~~~A~~Ie~Av~~~l~~G 380 (409)
T PRK07006 338 YAGLDKVNPGSVILSAEMMLRHMGWTEAADLIIKSMEKTIASK 380 (409)
T ss_pred hCCCCCcChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999987
No 18
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=6.5e-101 Score=752.68 Aligned_cols=300 Identities=36% Similarity=0.604 Sum_probs=286.8
Q ss_pred EEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCCCcccchh
Q psy9726 75 CTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSHTGELQTL 152 (381)
Q Consensus 75 IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~~~~~~s~ 152 (381)
|++|||||||||||+++++||++.+++|+|+++++|..++++++. |++++++|+++|++||||+++|.+ .+++|+
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~---~~~~s~ 77 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPAN---PGYKSV 77 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCC---CCccCh
Confidence 689999999999999999999998999999999999999988754 699999999999999999999975 346889
Q ss_pred hHHHHHhhcceeecEEeeecCCCCCCCC-CccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHHHHHh
Q psy9726 153 NMKLRKALDLYANVVHVKSLPGVKVRHS-NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATK 231 (381)
Q Consensus 153 ~~~LR~~ldlyanvRPv~~~pg~~~~~~-~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~ 231 (381)
|++|||+||||+|+||||++||++++++ ++|+|||||||||+|+|.++. .++++++++++||+++|||+|+||+||++
T Consensus 78 ~~~LR~~ldlyanvRP~r~~~g~~~~~~~~iD~vivREnteG~Y~g~~~~-~~~~a~~~~~~tr~~~eRi~r~AF~~A~~ 156 (322)
T TIGR02088 78 IVTLRKELDLYANVRPAKSLPGIPDLYPNGKDIVIVRENTEGLYAGFEFG-FSDRAIAIRVITREGSERIARFAFNLAKE 156 (322)
T ss_pred HHHHHHHcCCEEEEEEeeccCCCCCCCCCCCCEEEEEeCcCCeeeccccc-cCcceEEEEEecHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886 899999999999999999864 35688999999999999999999999999
Q ss_pred CCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCC
Q psy9726 232 NNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGG 311 (381)
Q Consensus 232 r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~Gs 311 (381)
|+| +||++||+|+|+.|+|||+++|+|++++|| |+++|++||++||+||++|++||||||+|||||||||++|+++||
T Consensus 157 r~~-~Vt~v~KaNvl~~t~glf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~Gg 234 (322)
T TIGR02088 157 RNR-KVTCVHKANVLKGTDGLFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGS 234 (322)
T ss_pred cCC-cEEEEeCCcchhhhHHHHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCC
Confidence 855 599999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 312 AGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 312 lGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
+||+||+|+|++.+||||.| ||||||+||++|||+|||+|++|||+|+|+.++|++|++||.+++++|.
T Consensus 235 lGl~pSanig~~~a~fep~h-Gsa~diaG~~~aNp~a~i~A~~~~l~~~g~~~~a~~i~~Av~~~l~~g~ 303 (322)
T TIGR02088 235 LGLAPSANIGDRKALFEPVH-GSAPDIAGKGIANPTAAILSVAMMLDYLGELEKGKLVWEAVEYYIIEGK 303 (322)
T ss_pred CCCCceeEEcCCceEEecCC-CChhHhCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999873
No 19
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=6.8e-101 Score=774.94 Aligned_cols=304 Identities=30% Similarity=0.471 Sum_probs=284.2
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHcC-------CCcceEEEecccccCCCCC--C--hHHHHHHHHhcCcEEEecccCCC
Q psy9726 74 KCTLIPGDGVGPELVYSVQEVFKAAN-------VPVDFEPFFFSEVNPTMSA--P--LETVADSIARNGICLKGVLSTPD 142 (381)
Q Consensus 74 ~IavipGDGIGpEV~~aa~~VL~a~~-------~~i~~~~~~~g~~~~~~~~--~--~~etl~~i~~~daiL~G~v~~p~ 142 (381)
.|++|||||||||||+++++||+++. .+|+|+++++|++++++++ . |++++++|+++|++||||+++|.
T Consensus 28 ~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~ 107 (416)
T TIGR00183 28 IIPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPV 107 (416)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCC
Confidence 39999999999999999999999652 4899999999999998876 4 69999999999999999999995
Q ss_pred CCCCcccchhhHHHHHhhcceeecEEeeecCCCCCCC---CCccEEEeccCCCceeeccccee-----------------
Q psy9726 143 YSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH---SNVDCVIIREQTEGEYSALEHEC----------------- 202 (381)
Q Consensus 143 ~~~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~---~~iDivIvREnteG~Y~g~e~~~----------------- 202 (381)
. .+++|+|+.||++||||||+||||++||+++|+ +++|||||||||||+|+|.++..
T Consensus 108 ~---~~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~g 184 (416)
T TIGR00183 108 G---GGIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNELG 184 (416)
T ss_pred C---ccccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccccC
Confidence 3 346788999999999999999999999999987 68999999999999999987321
Q ss_pred ------eCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHh-hC-----------
Q psy9726 203 ------VPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LY----------- 264 (381)
Q Consensus 203 ------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-ey----------- 264 (381)
..++++++++||++++|||+|+||+||++|++++||++||+|||+.|||+|++++.|+++ ||
T Consensus 185 ~~~~~~~~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~ 264 (416)
T TIGR00183 185 VKKIRFPEDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWD 264 (416)
T ss_pred ccccccccccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccccc
Confidence 124677999999999999999999999998778999999999999999999999889998 68
Q ss_pred --------CCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCccccccCCcCccc
Q psy9726 265 --------PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYS 336 (381)
Q Consensus 265 --------pdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~a~FEp~H~GsAp 336 (381)
|+|+++|++||+++||||++|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+| ||||
T Consensus 265 ~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~~alFEp~H-GSAP 343 (416)
T TIGR00183 265 KYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDEIGIFEATH-GTAP 343 (416)
T ss_pred cccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCCceEEECCC-CCch
Confidence 4999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 337 EAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 337 diaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
||||||+|||+|+|||++|||+|||+.++|++|++||.++|++|.
T Consensus 344 diAGk~iANP~a~IlS~amML~~lg~~~~A~~Ie~AV~~~l~~G~ 388 (416)
T TIGR00183 344 KYAGQDKVNPGSIILSGEMMLEHMGWKEAADLIKKAMEKAIASKI 388 (416)
T ss_pred hhcCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999873
No 20
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.1e-100 Score=768.51 Aligned_cols=303 Identities=28% Similarity=0.440 Sum_probs=281.5
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHc---C----CCcceEEEecccccCCCCC---C-hHHHHHHHHhcCcEEEecccCCC
Q psy9726 74 KCTLIPGDGVGPELVYSVQEVFKAA---N----VPVDFEPFFFSEVNPTMSA---P-LETVADSIARNGICLKGVLSTPD 142 (381)
Q Consensus 74 ~IavipGDGIGpEV~~aa~~VL~a~---~----~~i~~~~~~~g~~~~~~~~---~-~~etl~~i~~~daiL~G~v~~p~ 142 (381)
.|++|||||||||||+++++||+++ . .+|+|.++++|.+++++++ . |++|+++|+++|++||||+++|.
T Consensus 30 ~I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~ 109 (474)
T PRK07362 30 IIPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPI 109 (474)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCC
Confidence 4999999999999999999999965 1 4899999999999988775 3 69999999999999999999997
Q ss_pred CCCCcccchhhHHHHHhhcceeecEEeeecCCCCCCC---CCccEEEeccCCCceeeccccee-----------------
Q psy9726 143 YSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRH---SNVDCVIIREQTEGEYSALEHEC----------------- 202 (381)
Q Consensus 143 ~~~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~---~~iDivIvREnteG~Y~g~e~~~----------------- 202 (381)
+ .+.+|.|++|||.||||+|+||||++||+++|+ +++|+|||||||||+|+|.+++.
T Consensus 110 ~---~g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~ 186 (474)
T PRK07362 110 G---GGIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVI 186 (474)
T ss_pred C---cCccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhcccccccccc
Confidence 5 356789999999999999999999999999997 58999999999999999997531
Q ss_pred -----------eCCeEeeeeeecHHHHHHHHHHHHHHHHhC--CCCcEEEEEcCCccccccHHHHHHHHHHHh-h-----
Q psy9726 203 -----------VPGVVECLKIVTAEKSRRIAKFAFDYATKN--NRKKVTAVHKANIMKLGDGLFLNSCKEMAK-L----- 263 (381)
Q Consensus 203 -----------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r--~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-e----- 263 (381)
..++++++++|||.++|||+|+||+||++| +||+||+|||+|||++|+|+|++|+.|+++ +
T Consensus 187 ~~~~~~~~~~~~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~ 266 (474)
T PRK07362 187 PASPELGKRQIPLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDEC 266 (474)
T ss_pred cccccccccccccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhh
Confidence 123677999999999999999999999998 468899999999999999999998889986 4
Q ss_pred --------------CCC------------------------------------------------eEEeEEeHHHHHHHH
Q psy9726 264 --------------YPK------------------------------------------------IQFEQMIVDNCTMQI 281 (381)
Q Consensus 264 --------------ypd------------------------------------------------I~~~~~~vD~~~~~l 281 (381)
||+ |++++++||+++|||
T Consensus 267 v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~l 346 (474)
T PRK07362 267 VTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQI 346 (474)
T ss_pred hhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHH
Confidence 444 778999999999999
Q ss_pred HhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcC
Q psy9726 282 VSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVN 361 (381)
Q Consensus 282 v~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg 361 (381)
+++|++||||||+|||||||||++|+++||+||+||+|+|++.+||||+| ||||||||||+|||+|+|||++|||+|||
T Consensus 347 v~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~~a~FEpvH-GSAPdIAGk~iANP~A~ILS~aMML~~LG 425 (474)
T PRK07362 347 QTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDNAAIFEATH-GTAPKHAGLDRINPGSVILSGVMMLEYLG 425 (474)
T ss_pred HhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCCceeeecCC-CCchhhcCCCCcCcHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHcC
Q psy9726 362 LQYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 362 ~~~~A~~i~~Av~~~l~~G 380 (381)
+.++|++|++||.++|++|
T Consensus 426 ~~~~A~~I~~AV~~vl~~g 444 (474)
T PRK07362 426 WQEAADLITKGLSAAIANK 444 (474)
T ss_pred CHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999987
No 21
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=2e-98 Score=745.92 Aligned_cols=304 Identities=44% Similarity=0.689 Sum_probs=282.5
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHcC----CCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCCCc
Q psy9726 74 KCTLIPGDGVGPELVYSVQEVFKAAN----VPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSHTG 147 (381)
Q Consensus 74 ~IavipGDGIGpEV~~aa~~VL~a~~----~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~~~ 147 (381)
+|++|||||||||||+++++||+++. ++|+|+++++|..++++++. |++++++|+++|++||||+++|.++. .
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~-~ 79 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPG-I 79 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSS-H
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccc-c
Confidence 69999999999999999999999974 88999999999999988643 79999999999999999999998421 1
Q ss_pred ccchhhHHHHHhhcceeecEEeeec--CCCCCCCC-----CccEEEeccCCCceeecccceeeCC-----eEeeeeeecH
Q psy9726 148 ELQTLNMKLRKALDLYANVVHVKSL--PGVKVRHS-----NVDCVIIREQTEGEYSALEHECVPG-----VVECLKIVTA 215 (381)
Q Consensus 148 ~~~s~~~~LR~~ldlyanvRPv~~~--pg~~~~~~-----~iDivIvREnteG~Y~g~e~~~~~~-----va~~~~~~Tr 215 (381)
...+++++||++||||+|+||||++ ++..+|++ ++||+||||||||+|+|.++...++ +++++++|||
T Consensus 80 ~~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~~~~~~~~a~~~~~~t~ 159 (348)
T PF00180_consen 80 RSENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGDGGTPDEVAIDTKVITR 159 (348)
T ss_dssp SHHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECSEEEGSSEEEEEEEEEH
T ss_pred ccHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceeeccCCCceEEEeecccc
Confidence 2234569999999999999999999 56677766 5999999999999999999887654 8999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHh-hCCCeEEeEEeHHHHHHHHHhCCCCccEEEcC
Q psy9726 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMP 294 (381)
Q Consensus 216 ~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~ 294 (381)
+++|||+|+||+||++|+||+||++||+|+|+.++ ||+++|+|+++ +||+|++++++||+++|+|+++|++||||||+
T Consensus 160 ~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~fdViv~~ 238 (348)
T PF00180_consen 160 EGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQFDVIVTP 238 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGESEEEEE
T ss_pred chhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcceeEeeeeechhhhheeecCCcceeEEeec
Confidence 99999999999999999999999999999999998 99999999998 99999999999999999999999999999999
Q ss_pred CcchhHHHHhhhhhcCCcccccccccC-CCccccccCCcCccccccCCCccChhHHHHHHHHHHhh-cCchHHHHHHHHH
Q psy9726 295 NLYGNIVDNLASGLVGGAGVVAGASWS-PECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYYGDMIRNA 372 (381)
Q Consensus 295 Nl~GDILSDlaa~l~GslGl~psanig-~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~h-lg~~~~A~~i~~A 372 (381)
|||||||||++++++||+||+||+|+| +.++||||+| ||||||+|||+|||+|||||++|||+| ||+.++|++|++|
T Consensus 239 Nl~GDIlSDl~a~l~G~lGl~psanig~~~~a~fEp~H-GSApdiaGk~~aNP~a~Ils~a~mL~~~lg~~~~a~~i~~A 317 (348)
T PF00180_consen 239 NLFGDILSDLAAGLVGGLGLAPSANIGPDGHAMFEPVH-GSAPDIAGKGIANPIAMILSAAMMLEHSLGLPEAADAIEKA 317 (348)
T ss_dssp HHHHHHHHHHHHHHHTSGGGEEEEEEETSSEEEEEESS-TTTGGGTTSSHS-THHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhHHHHHHHhhhcCCChhhhhhhccCccccccccccc-cccccccCCcccCcHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999999999999999999999 7899999999 999999999999999999999999999 9999999999999
Q ss_pred HHHHHHcC
Q psy9726 373 VNRVLKAG 380 (381)
Q Consensus 373 v~~~l~~G 380 (381)
|.+++++|
T Consensus 318 v~~~l~~g 325 (348)
T PF00180_consen 318 VEKVLEEG 325 (348)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999986
No 22
>KOG0784|consensus
Probab=100.00 E-value=9e-93 Score=680.80 Aligned_cols=313 Identities=64% Similarity=0.985 Sum_probs=294.3
Q ss_pred cCCCCceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEecccCCCCCCC
Q psy9726 67 SVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHT 146 (381)
Q Consensus 67 sa~~~~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~v~~p~~~~~ 146 (381)
+.||++++|++|||||||||++.++.+|+++..+|++|+++++++........+++++++++++++.|||.+.||.. +
T Consensus 37 ~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~~~~~~~~~~e~v~Si~rNkValkG~i~t~~~--~ 114 (375)
T KOG0784|consen 37 AKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGSNKESSEDLDEAVESIKRNKVALKGNIETPDL--P 114 (375)
T ss_pred cccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCCccccchhHHHHHHHHHhcceeEeecccCCCC--c
Confidence 35677778888888899999999999999999999999999999822222234799999999999999999999932 4
Q ss_pred cccchhhHHHHHhhcceeecEEeeecCCCCCCCCCccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHH
Q psy9726 147 GELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAF 226 (381)
Q Consensus 147 ~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AF 226 (381)
++..|.|++||++||||||+-.|+++||++++++++|+|||||||||+|+|.||++++|++++++++|++.+|||+||||
T Consensus 115 g~~~s~n~~LR~~LDLyanvv~~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~VpGVVEsLKVvT~~kseRIaryAF 194 (375)
T KOG0784|consen 115 GGAKSLNVKLRKELDLYANVVHCKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESVPGVVESLKVVTRFKSERIARYAF 194 (375)
T ss_pred cchhhhHHHHHHhhhhhhheeeeeccCCcccccCCccEEEEecCCcccccccccccCcchhheeeeehhhhhHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhh
Q psy9726 227 DYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 306 (381)
Q Consensus 227 e~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa 306 (381)
|||.+++|||||.|||+|+||.+||||+++|+||++.||+|+++.|+||++|||||++|++|||+|++||||.|+|.+|+
T Consensus 195 ~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva~~Yp~I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaa 274 (375)
T KOG0784|consen 195 EYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVAKKYPDITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAA 274 (375)
T ss_pred HHHHHhCCceEEEEeccCceecchhhHHHHHHHHHhcCCCccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hhcCCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 307 GLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 307 ~l~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
+++||.|+.|++|+|+++++|||.-+.+--+++||++|||+|||+|++|||+|||++..|++|++||.+||.+||
T Consensus 275 GlvGG~Glv~G~n~G~~yAVFE~g~r~~~~~~~g~~~aNPtA~llss~~MLrHL~l~~~Ad~i~~Av~~vi~egk 349 (375)
T KOG0784|consen 275 GLVGGAGLVSGANYGDDYAVFEPGARHTGTSIAGKNIANPTAMLLSSVDMLRHLGLPSHADRISTAVKRVIDEGK 349 (375)
T ss_pred HhcCCCCcccccccccceEEecccccccchhhhcccccCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999996544446799999999999999999999999999999999999999999996
No 23
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.2e-91 Score=695.53 Aligned_cols=301 Identities=19% Similarity=0.271 Sum_probs=274.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC----
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH---- 145 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~---- 145 (381)
+.+|++||||||||||+++++.+|.+..++|+|+++++|.+++++++. |++++++|+++|++||||+++|....
T Consensus 7 ~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~ 86 (402)
T PRK08299 7 KNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEARVKEF 86 (402)
T ss_pred CCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCccccccc
Confidence 457999999999999999999999999999999999999999988754 69999999999999999999996210
Q ss_pred --CcccchhhHHHHHhhcceeecEEe--ee----cCCCCCCCCCccEEEeccCCCceeeccccee------------eCC
Q psy9726 146 --TGELQTLNMKLRKALDLYANVVHV--KS----LPGVKVRHSNVDCVIIREQTEGEYSALEHEC------------VPG 205 (381)
Q Consensus 146 --~~~~~s~~~~LR~~ldlyanvRPv--~~----~pg~~~~~~~iDivIvREnteG~Y~g~e~~~------------~~~ 205 (381)
...++|+|++|||+||||+|+||| +. +||+++ +++||||||||+|+|.++.. .++
T Consensus 87 ~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~-----~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g 161 (402)
T PRK08299 87 NLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTK-----PIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDG 161 (402)
T ss_pred CccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCC-----CEEEEecccCCcccceeEEeccCccceeeeecCCC
Confidence 123679999999999999999998 66 788754 59999999999999998764 122
Q ss_pred ------------eEeeeee-ecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHh-hCC------
Q psy9726 206 ------------VVECLKI-VTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYP------ 265 (381)
Q Consensus 206 ------------va~~~~~-~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-eyp------ 265 (381)
.+.++++ +||+++|||+|+||+||++|+ ++||++||+|||+.+||||+++|+||++ +||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~-~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~ 240 (402)
T PRK08299 162 EPIEHEVHDFPGAGVAMGMYNLDESIRDFARASFNYGLDRK-YPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAA 240 (402)
T ss_pred ccccceecccccCceeEEEeecHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccC
Confidence 1234455 999999999999999999985 5699999999999999999999999995 899
Q ss_pred CeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCc--cccccCCcCcccc-----c
Q psy9726 266 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPEC--VVFEPGARHTYSE-----A 338 (381)
Q Consensus 266 dI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~--a~FEp~H~GsApd-----i 338 (381)
||++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|++. +||||+| ||||| |
T Consensus 241 ~i~~~~~~vDa~~~~lv~~P~~f-Vivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~H-GSAPD~~~~~I 318 (402)
T PRK08299 241 GITYEHRLIDDMVASALKWEGGY-VWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAH-GTVTRHYRQHQ 318 (402)
T ss_pred cEEEEEeeHHHHHHHHHhCcCCc-EEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCC-CCCcccccccc
Confidence 59999999999999999999999 99999999999999999999999999999999874 8999999 99999 9
Q ss_pred cCCCc-cChhHHHHHHHHHHhhcCc-------hHHHHHHHHHHHHHHHcC
Q psy9726 339 VGKNV-ANPTAMLLCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 339 aGk~~-ANP~a~Ils~ammL~hlg~-------~~~A~~i~~Av~~~l~~G 380 (381)
||||+ |||+|||||++|||+|||+ .++|++|++||.+++++|
T Consensus 319 aGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g 368 (402)
T PRK08299 319 KGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESG 368 (402)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcC
Confidence 99997 9999999999999999999 889999999999999987
No 24
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=8.6e-89 Score=681.03 Aligned_cols=304 Identities=18% Similarity=0.220 Sum_probs=276.3
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCC-----
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYS----- 144 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~----- 144 (381)
...+++|+|||||+|++++++++|.+..++|+|+++++|.+++++++. |++++++|+++|++||||++||...
T Consensus 9 ~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~ 88 (410)
T PLN00103 9 ANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (410)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCccccccccc
Confidence 457999999999999999999999999999999999999999988754 6999999999999999999999521
Q ss_pred -CCcccchhhHHHHHhhcceeecEE--eeecC----CCCCCC---------------------CCccEEEeccCCCceee
Q psy9726 145 -HTGELQTLNMKLRKALDLYANVVH--VKSLP----GVKVRH---------------------SNVDCVIIREQTEGEYS 196 (381)
Q Consensus 145 -~~~~~~s~~~~LR~~ldlyanvRP--v~~~p----g~~~~~---------------------~~iDivIvREnteG~Y~ 196 (381)
....++|+|++||++||||+|+|| ||++| |+++|+ +++|+|||||||||+|
T Consensus 89 ~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~y- 167 (410)
T PLN00103 89 GLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKT- 167 (410)
T ss_pred CccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCcee-
Confidence 012267999999999999999999 99988 888775 6789999999999999
Q ss_pred cccceee--C-CeEeeeeee-cHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHh-----hCC--
Q psy9726 197 ALEHECV--P-GVVECLKIV-TAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-----LYP-- 265 (381)
Q Consensus 197 g~e~~~~--~-~va~~~~~~-Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-----eyp-- 265 (381)
|++.. . ..+++++++ |++++|||+|+||+||++|+ ++||++||+|||+.+||+|+++|+||++ +||
T Consensus 168 --e~~~~~~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~r~-~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~ 244 (410)
T PLN00103 168 --ELEVYNFTGAGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAA 244 (410)
T ss_pred --EEEeeccCCCcceEEEEEcCHHHHHHHHHHHHHHHHhcC-CcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCC
Confidence 22221 1 234567886 99999999999999999985 4699999999999999999999999986 799
Q ss_pred CeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCc--cccccCCcCcccc------
Q psy9726 266 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPEC--VVFEPGARHTYSE------ 337 (381)
Q Consensus 266 dI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~--a~FEp~H~GsApd------ 337 (381)
+|++++++||++||+|+++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+| |||||
T Consensus 245 ~I~~~~~lVDa~a~~lv~~P~~f-Viv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~H-GSApd~~~~~d 322 (410)
T PLN00103 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH-GTVTRHYRVHQ 322 (410)
T ss_pred ceEEEEeEHHHHHHHHhcCCCCC-EEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCC-CcCcccchhhh
Confidence 89999999999999999999999 99999999999999999999999999999999873 6999999 99998
Q ss_pred ccCCCccChhHHHHHHHHHHhhc-------CchHHHHHHHHHHHHHHHcCC
Q psy9726 338 AVGKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 338 iaGk~~ANP~a~Ils~ammL~hl-------g~~~~A~~i~~Av~~~l~~G~ 381 (381)
|+|||+|||+|+|||++|||+|| |+.++|++|++||.+++++|.
T Consensus 323 iaGk~iANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G~ 373 (410)
T PLN00103 323 KGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESGK 373 (410)
T ss_pred hcCCCccChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999999 889999999999999999873
No 25
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-83 Score=641.72 Aligned_cols=301 Identities=21% Similarity=0.258 Sum_probs=269.5
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHH----cCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKA----ANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH 145 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a----~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~ 145 (381)
+..+..|.|| |++..+.+.+.. ..++++|+++++|.+.+++++. |++++++|+++|++||||++||..+.
T Consensus 9 ~~~~v~~~~~----em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~ 84 (413)
T PTZ00435 9 KNPVVELDGD----EMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEAR 84 (413)
T ss_pred cCCeEEeccc----HHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCcccc
Confidence 3578999999 666655554433 3689999999999999988854 69999999999999999999997521
Q ss_pred C------cccchhhHHHHHhhcceeecEEe------eecCCCCCC-----------CCCccEEEeccCC-Cceeecc-cc
Q psy9726 146 T------GELQTLNMKLRKALDLYANVVHV------KSLPGVKVR-----------HSNVDCVIIREQT-EGEYSAL-EH 200 (381)
Q Consensus 146 ~------~~~~s~~~~LR~~ldlyanvRPv------~~~pg~~~~-----------~~~iDivIvREnt-eG~Y~g~-e~ 200 (381)
. ++++|+|++||+.||||+|+||| +++||+++| ++++|++|+|||| ||+|++. ++
T Consensus 85 ~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g~ 164 (413)
T PTZ00435 85 VKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADGS 164 (413)
T ss_pred ccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCCC
Confidence 1 23789999999999999999998 668888766 6889999999999 9999998 54
Q ss_pred e---------eeCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHh-hCC-----
Q psy9726 201 E---------CVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK-LYP----- 265 (381)
Q Consensus 201 ~---------~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~-eyp----- 265 (381)
+ ..++++.+. ++||+++|||+|+||+||++|+ ++||++||+||||.+||||+++|+|+++ +||
T Consensus 165 ~~~~~~~~~~~~~~v~~~~-~~Tr~~~eRIar~AF~~A~~r~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~ 242 (413)
T PTZ00435 165 EPQRVDVFDFKGGGVAMGM-YNTDESIEGFARSCFQYALDRK-MPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEK 242 (413)
T ss_pred cceeeeeeccCCCCeeEEE-EeCHHHHHHHHHHHHHHHHHcC-CCEEEECCCCcchhhHHHHHHHHHHHHHHhCcccccc
Confidence 3 236777656 9999999999999999999985 4799999999999999999999999985 799
Q ss_pred -CeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCc--cccccCCcCccccc----
Q psy9726 266 -KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPEC--VVFEPGARHTYSEA---- 338 (381)
Q Consensus 266 -dI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~--a~FEp~H~GsApdi---- 338 (381)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++. +||||+| ||||||
T Consensus 243 ~~I~~~~~lVDa~~m~lv~~P~~f-ViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~H-GSApdi~~~~ 320 (413)
T PTZ00435 243 AGLWYEHRLIDDMVAQAIKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAH-GTVTRHYRQH 320 (413)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCe-EEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCc-CCccccchhh
Confidence 99999999999999999999999 99999999999999999999999999999999874 9999999 999998
Q ss_pred -cCC-CccChhHHHHHHHHHHhhcCc-------hHHHHHHHHHHHHHHHcC
Q psy9726 339 -VGK-NVANPTAMLLCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 339 -aGk-~~ANP~a~Ils~ammL~hlg~-------~~~A~~i~~Av~~~l~~G 380 (381)
+|| ++|||+|+|||++|||+|||+ .++|++|++||.+++++|
T Consensus 321 iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g 371 (413)
T PTZ00435 321 QKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAG 371 (413)
T ss_pred hcCCCCccChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcC
Confidence 896 789999999999999999995 688999999999999987
No 26
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=2.6e-83 Score=640.65 Aligned_cols=300 Identities=19% Similarity=0.246 Sum_probs=270.6
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHH----cCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC-
Q psy9726 73 TKCTLIPGDGVGPELVYSVQEVFKA----ANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH- 145 (381)
Q Consensus 73 ~~IavipGDGIGpEV~~aa~~VL~a----~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~- 145 (381)
..+..+.|| |++..+.+.+.. ..++++|+++++|.+.+++++. |++++++|+++|++||||++||....
T Consensus 7 ~p~v~~~g~----em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~ 82 (409)
T TIGR00127 7 NPVVEMDGD----EMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARV 82 (409)
T ss_pred CCeEEecCc----HHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccc
Confidence 468899999 666666655543 3689999999999999988754 69999999999999999999997421
Q ss_pred -----CcccchhhHHHHHhhcceeecEE------eeecCCCCCC-----------CCCccEEEeccCC-Cceeeccccee
Q psy9726 146 -----TGELQTLNMKLRKALDLYANVVH------VKSLPGVKVR-----------HSNVDCVIIREQT-EGEYSALEHEC 202 (381)
Q Consensus 146 -----~~~~~s~~~~LR~~ldlyanvRP------v~~~pg~~~~-----------~~~iDivIvREnt-eG~Y~g~e~~~ 202 (381)
.++++|+|++||+.||||||+|| ++++||+++| ++++|++|+|||| ||+|+|.++..
T Consensus 83 ~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~ 162 (409)
T TIGR00127 83 EEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQ 162 (409)
T ss_pred cccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCc
Confidence 13468999999999999999999 8899999876 7899999999999 99999998632
Q ss_pred -----------eCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-hhCC-----
Q psy9726 203 -----------VPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYP----- 265 (381)
Q Consensus 203 -----------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva-~eyp----- 265 (381)
.+++++++ ++||+++|||+|+||+||++|+ ++||++||+|||+.+||+|+++|+|++ ++||
T Consensus 163 ~~~~~~~~~~~~~~v~~~~-~~T~~~~eRIar~AF~~A~~~~-~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 163 KVTLKVYDFEEGGGVAMAM-YNTDESIEGFAHSSFQLALEKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred ccceeeeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHcC-CCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 14677766 8999999999999999999985 579999999999999999999999996 7999
Q ss_pred -CeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCcc--ccccCCcCccccc----
Q psy9726 266 -KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECV--VFEPGARHTYSEA---- 338 (381)
Q Consensus 266 -dI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~a--~FEp~H~GsApdi---- 338 (381)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++.+ ||||+| ||||||
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~f-Viv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~H-GSApdi~~~~ 318 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGF-IWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAH-GTVTRHYRMY 318 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCc-EEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEecccc-CCCcccchhh
Confidence 89999999999999999999999 999999999999999999999999999999998855 679999 999998
Q ss_pred -cCC-CccChhHHHHHHHHHHhhcC-------chHHHHHHHHHHHHHHHcC
Q psy9726 339 -VGK-NVANPTAMLLCSTKMLSHVN-------LQYYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 339 -aGk-~~ANP~a~Ils~ammL~hlg-------~~~~A~~i~~Av~~~l~~G 380 (381)
||| ++|||+|+|||++|||+|+| +.++|++|++||.+++++|
T Consensus 319 iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g 369 (409)
T TIGR00127 319 QKGQETSTNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAG 369 (409)
T ss_pred hCCCCCccChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcC
Confidence 896 78999999999999999986 6899999999999999987
No 27
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=4.3e-82 Score=639.38 Aligned_cols=303 Identities=19% Similarity=0.239 Sum_probs=277.8
Q ss_pred ceEEEEecCCCchhHHHHHHHHHHHHcCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC----
Q psy9726 72 RTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH---- 145 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~---- 145 (381)
+..|++|+|||||+||++..+++|....++++|+++++|.+.+++++. +++++++++++|++||||++||....
T Consensus 77 ~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~ 156 (483)
T PLN03065 77 QNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 156 (483)
T ss_pred cCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccc
Confidence 346999999999999999999999999999999999999999998865 69999999999999999999997521
Q ss_pred --CcccchhhHHHHHhhcceeecEEe------eecCCCCCC-----------CCCccEEEe----------ccCCCceee
Q psy9726 146 --TGELQTLNMKLRKALDLYANVVHV------KSLPGVKVR-----------HSNVDCVII----------REQTEGEYS 196 (381)
Q Consensus 146 --~~~~~s~~~~LR~~ldlyanvRPv------~~~pg~~~~-----------~~~iDivIv----------REnteG~Y~ 196 (381)
.+.|+|+|++||+.||||+|+||| +++||++.| ++++|++|+ |||||+
T Consensus 157 ~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~--- 233 (483)
T PLN03065 157 GLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNA--- 233 (483)
T ss_pred ccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCC---
Confidence 245789999999999999999999 889999775 678999998 999987
Q ss_pred cccce----eeCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-----hhCC--
Q psy9726 197 ALEHE----CVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA-----KLYP-- 265 (381)
Q Consensus 197 g~e~~----~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva-----~eyp-- 265 (381)
+.++. ..+++++++ ++|++++|||+|+||+||++| +++||++||+||||.+||+|+++|+||+ ++||
T Consensus 234 ~~e~~v~~f~~~gva~~~-~nT~~sieriAr~AF~yA~~r-k~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~ 311 (483)
T PLN03065 234 PVELDVYDFKGPGVALAM-YNVDESIRAFAESSMAMALQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEH 311 (483)
T ss_pred cceeEeeccCCCCeEEEE-EECHHHHHHHHHHHHHHHHHc-CCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCC
Confidence 55544 246788875 899999999999999999997 4579999999999999999999999998 4599
Q ss_pred CeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCc--cccccCCcCcccc-----c
Q psy9726 266 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPEC--VVFEPGARHTYSE-----A 338 (381)
Q Consensus 266 dI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~--a~FEp~H~GsApd-----i 338 (381)
+|+++|++||+|||+||++|++| ||||+|||||||||++|+++|||||+||+|+|++. ++|||+| ||||| +
T Consensus 312 ~I~~e~~lIDa~~~~lvk~P~~F-Viv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~H-GSapd~~~~~i 389 (483)
T PLN03065 312 SIWYEHRLIDDMVAYAVKSEGGY-VWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAH-GTVTRHFRLHQ 389 (483)
T ss_pred CceEEeeeHHHHHHHHHhCCCCc-EEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCc-CcCccccchhc
Confidence 69999999999999999999999 99999999999999999999999999999999875 6999999 99999 8
Q ss_pred cCCC-ccChhHHHHHHHHHHhhcCc-------hHHHHHHHHHHHHHHHcCC
Q psy9726 339 VGKN-VANPTAMLLCSTKMLSHVNL-------QYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 339 aGk~-~ANP~a~Ils~ammL~hlg~-------~~~A~~i~~Av~~~l~~G~ 381 (381)
+||+ +|||+|+|+|++|||+|+|. .++|++|++||.+++++|.
T Consensus 390 aGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~ 440 (483)
T PLN03065 390 KGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGK 440 (483)
T ss_pred cCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCC
Confidence 9999 59999999999999999997 6789999999999999873
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.4e-81 Score=608.14 Aligned_cols=320 Identities=32% Similarity=0.472 Sum_probs=298.3
Q ss_pred eEEEeeCCCCCCcceeeeccccccCCCCceEEEEecCCCchhHHHHHHHHHHHHc-------CCCcceEEEecccccCCC
Q psy9726 44 TKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEVNPTM 116 (381)
Q Consensus 44 ~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~IavipGDGIGpEV~~aa~~VL~a~-------~~~i~~~~~~~g~~~~~~ 116 (381)
.++++.+|.-..|. +..|.+|.|||||+||++++.+|++++ ..+|+|.++++|.++++.
T Consensus 4 ~~i~~~~g~l~vp~--------------~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~ 69 (407)
T COG0538 4 EKITVKNGKLMVPD--------------KPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDK 69 (407)
T ss_pred ceEEecCCcccCCC--------------CcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHh
Confidence 46676677667776 889999999999999999999999985 279999999999999998
Q ss_pred CCC--hHHHHHHHHhcCcEEEecccCCCCCCCcccchhhHHHHHhhcceeecEEeeecCCCCCCCC---CccEEEeccCC
Q psy9726 117 SAP--LETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHS---NVDCVIIREQT 191 (381)
Q Consensus 117 ~~~--~~etl~~i~~~daiL~G~v~~p~~~~~~~~~s~~~~LR~~ldlyanvRPv~~~pg~~~~~~---~iDivIvREnt 191 (381)
++. |+||+++++++.+.+|||+.||.. ++++|+|++||+.||||+|+|||+.+||+|+|.+ .+||||+||||
T Consensus 70 tg~~lp~etl~aikky~VaIKgpl~TPvg---~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRent 146 (407)
T COG0538 70 TGDQLPIETLEAIKKYGVAIKGPLTTPVG---KGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENT 146 (407)
T ss_pred hcCcCCHHHHHHHHHhCEEeeccccCccc---ccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccc
Confidence 864 799999999999999999999985 7899999999999999999999999999999864 59999999999
Q ss_pred Cceeecccceee-----------------------CCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCcccc
Q psy9726 192 EGEYSALEHECV-----------------------PGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKL 248 (381)
Q Consensus 192 eG~Y~g~e~~~~-----------------------~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~ 248 (381)
|+.|.|.|+... ++..+.++.+++++++|++|.||+||.+++|+.||++||.||||.
T Consensus 147 eDiYagiE~~~~s~~a~kl~~fl~~e~~~~~i~~pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~ 226 (407)
T COG0538 147 EDIYAGIEWKAGSPEALKLIFFLEDEMGVKKIRFPEDSGIGIKPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKF 226 (407)
T ss_pred cchhheeeeccCCcchhhhhhhhhcccccceEecCCCCceEEEecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeec
Confidence 999999987531 234567899999999999999999999998899999999999999
Q ss_pred ccHHHHHHHHHHHhh--C-------------CC----eEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhc
Q psy9726 249 GDGLFLNSCKEMAKL--Y-------------PK----IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLV 309 (381)
Q Consensus 249 tdglf~~~~~eva~e--y-------------pd----I~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~ 309 (381)
|+|-|++|+.||+++ | .+ |.++|+++|+|.+|++++|+.||||.|.||.||++||.+|+.+
T Consensus 227 teGaFkdw~yeva~~~ef~~~~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~v 306 (407)
T COG0538 227 TEGAFKDWGYEVAEEEEFGDEVVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQV 306 (407)
T ss_pred ccchHHHHHHHHHhhhcccccccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhc
Confidence 999999999999864 3 24 9999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHcCC
Q psy9726 310 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 310 GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~hlg~~~~A~~i~~Av~~~l~~G~ 381 (381)
||+||+||+|+|+.+++|||+| ||||+++||+++||+|.|||+.|||+|+|+.++|+.|++|+..++++|+
T Consensus 307 GglGi~pgani~~~~~~fEA~H-GTapk~aG~~~~Np~a~Ils~~~ml~~~Gw~eaa~li~~a~~~ti~~~~ 377 (407)
T COG0538 307 GGLGLAPGANIGDGTAEFEATH-GTAPKYAGKDSTNPIASILSGTMMLRHRGWLEAADLIEKAVEDTIESGK 377 (407)
T ss_pred CCccccccceecCceEEEEecc-CccccccCcCCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999985
No 29
>KOG0786|consensus
Probab=100.00 E-value=4e-81 Score=580.53 Aligned_cols=308 Identities=27% Similarity=0.430 Sum_probs=283.1
Q ss_pred CceEEEEecCCCchhHHHHHHHHHHHHc----CCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCC
Q psy9726 71 GRTKCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYS 144 (381)
Q Consensus 71 ~~~~IavipGDGIGpEV~~aa~~VL~a~----~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~ 144 (381)
.+|+|+++|||||||||+..+++||+++ +++|+|++.++|+++.+..+. |+||+++.+++|++|+|++|.|+|+
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~ 82 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWD 82 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccC
Confidence 4799999999999999999999999997 589999999999999998764 6999999999999999999999996
Q ss_pred CC-cccchhhHHHHHhhcceeecEEeeecCCCC--CC-----CCCccEEEeccCCCceeeccccee-eCCeEeeeeeecH
Q psy9726 145 HT-GELQTLNMKLRKALDLYANVVHVKSLPGVK--VR-----HSNVDCVIIREQTEGEYSALEHEC-VPGVVECLKIVTA 215 (381)
Q Consensus 145 ~~-~~~~s~~~~LR~~ldlyanvRPv~~~pg~~--~~-----~~~iDivIvREnteG~Y~g~e~~~-~~~va~~~~~~Tr 215 (381)
.. -.++..+++||++|.+|||+|||.+.|.+- |+ .+++|++||||.|+|+|+|..... .++++.++.+|+-
T Consensus 83 ~~~lrpe~gll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~eng~gva~dte~Ya~ 162 (363)
T KOG0786|consen 83 KNHLRPEMGLLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRNENGEGVAFDTEIYAA 162 (363)
T ss_pred cCCcChhhhHHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCcccCCCcceeeccccccH
Confidence 42 345678999999999999999999988662 22 368999999999999999986543 4679999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-CCcEEEEEcCCccccccHHHHHHHHH-HHhhCCCeEEeEEeHHHHHHHHHhCCCCcc-EEE
Q psy9726 216 EKSRRIAKFAFDYATKNN-RKKVTAVHKANIMKLGDGLFLNSCKE-MAKLYPKIQFEQMIVDNCTMQIVSNPHQFD-VMV 292 (381)
Q Consensus 216 ~~~eRiar~AFe~A~~r~-~k~Vt~v~KaNv~~~tdglf~~~~~e-va~eypdI~~~~~~vD~~~~~lv~~P~~fd-Viv 292 (381)
+++.||+|.||+.|++|+ ..+++++||+||+.. +.|||+.+.+ ++.|||++++.|++||+++|+||+||.+|| +||
T Consensus 163 ~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLaa-SrLWRKtV~~~~k~EyP~l~l~hqliDsAAM~Lvk~P~~lng~iv 241 (363)
T KOG0786|consen 163 HEVDRIARVAAETARKRRPPGPLCSLDKANVLAA-SRLWRKTVTKALKSEYPDLELSHQLIDSAAMQLVKDPKQLNGTIV 241 (363)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCccccchhhHHHH-HHHHHHHHHHHHHhhCCCcchhhhhhhHHHHHHhcCchhcCceEE
Confidence 999999999999999873 478999999999985 6999998875 478999999999999999999999999999 999
Q ss_pred cCCcchhHHHHhhhhhcCCcccccccccCC------CccccccCCcCccccccCCCccChhHHHHHHHHHHhh-cCchHH
Q psy9726 293 MPNLYGNIVDNLASGLVGGAGVVAGASWSP------ECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSH-VNLQYY 365 (381)
Q Consensus 293 t~Nl~GDILSDlaa~l~GslGl~psanig~------~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~h-lg~~~~ 365 (381)
|.|+||||+||+++.+.||+||.|||+++. .+++|||+| ||||||+||+++||+|+|||++|||+| ||.+++
T Consensus 242 T~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~~gL~EPiH-GSAPDiagk~kvNPlaTILSAamlLkygLn~pke 320 (363)
T KOG0786|consen 242 TNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESGPGLFEPIH-GSAPDIAGKDKVNPLATILSAAMLLKYGLNEPKE 320 (363)
T ss_pred eccchhhhhccccccccCccccccchhhcCCcccccCCcccccCC-CCCCCcCCCCccChHHHHHHHHHHHHhcCCChhh
Confidence 999999999999999999999999999982 378999999 999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHcC
Q psy9726 366 GDMIRNAVNRVLKAG 380 (381)
Q Consensus 366 A~~i~~Av~~~l~~G 380 (381)
|++|++||..+|+.|
T Consensus 321 akaIEdAV~kvLd~G 335 (363)
T KOG0786|consen 321 AKAIEDAVVKVLDKG 335 (363)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999876
No 30
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.7e-66 Score=509.39 Aligned_cols=295 Identities=17% Similarity=0.205 Sum_probs=249.7
Q ss_pred EEecCCCchhHHHHHHHHHHHH----cCCCcc-eEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC---
Q psy9726 76 TLIPGDGVGPELVYSVQEVFKA----ANVPVD-FEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH--- 145 (381)
Q Consensus 76 avipGDGIGpEV~~aa~~VL~a----~~~~i~-~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~--- 145 (381)
..+.|| |+++-..+.++. ..++++ |+++|+|.+.++.+++ .-|+.++++++.+++|||+.||...+
T Consensus 2 v~~~gd----emtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e 77 (393)
T PLN00096 2 VYVAGE----EMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKR 77 (393)
T ss_pred eeecch----HHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHh
Confidence 346777 666666655544 368895 9999999999999865 58899999999999999999997421
Q ss_pred ---CcccchhhHHHHHhhcc-eeecEEeeecCCCCCCCCCccEEEeccCCCceeeccccee-------------------
Q psy9726 146 ---TGELQTLNMKLRKALDL-YANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHEC------------------- 202 (381)
Q Consensus 146 ---~~~~~s~~~~LR~~ldl-yanvRPv~~~pg~~~~~~~iDivIvREnteG~Y~g~e~~~------------------- 202 (381)
.+.|+|||.+||+.||. .++-+|+. +++++ |.=...++|-|..-+|.|.. +...
T Consensus 78 ~~lk~~w~sPNgtiR~~l~G~tvfR~pi~-~~~i~-~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~ 154 (393)
T PLN00096 78 LGLKKAWGSPNGAMRRGWNGITISRDTIH-IDGVE-LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPI 154 (393)
T ss_pred hchhhhcCCCcHHHHhhcCCceEeeCCEe-cCCCC-CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCce
Confidence 25688999999999999 88888874 34443 11135677888888888765 3221
Q ss_pred ---------eCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-hhC--------
Q psy9726 203 ---------VPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLY-------- 264 (381)
Q Consensus 203 ---------~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva-~ey-------- 264 (381)
.++++ -.+.+|.+.++||+|+||+||++|+ ++||++||+||||++++||+ +|+|++ ++|
T Consensus 155 ~~~~~~f~~~~gv~-~~~~N~~~si~RiAr~AF~~A~~r~-~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~ 231 (393)
T PLN00096 155 VVDDRTITDDLNAV-VTYHNPLDNVHHLARIFFGRCLDAG-IVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKG 231 (393)
T ss_pred EEEEEecCCCCeEE-EEeccCHHHHHHHHHHHHHHHHHhC-CcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcc
Confidence 01233 2479999999999999999999984 56999999999999999998 999997 788
Q ss_pred ---CCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC---c--cccccCCcCccc
Q psy9726 265 ---PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE---C--VVFEPGARHTYS 336 (381)
Q Consensus 265 ---pdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~---~--a~FEp~H~GsAp 336 (381)
|+|+++|++||+|+||||++|++||||||+|||||||||++|+++|||||+||+|+|++ . ++|||+| ||||
T Consensus 232 ~~~p~V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~H-GSAp 310 (393)
T PLN00096 232 VMKSGDELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASH-GTVT 310 (393)
T ss_pred cCCCceEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCC-CChH
Confidence 78999999999999999999999999999999999999999999999999999999943 3 8999999 9999
Q ss_pred ccc-----CCC-ccChhHHHHHHHHHHhhc----Cc----hHHHHHHHHHHHHHHHcCC
Q psy9726 337 EAV-----GKN-VANPTAMLLCSTKMLSHV----NL----QYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 337 dia-----Gk~-~ANP~a~Ils~ammL~hl----g~----~~~A~~i~~Av~~~l~~G~ 381 (381)
||+ ||+ +|||+|+|||++|||+|+ |+ .++|++|++||.+++++|.
T Consensus 311 diag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~ 369 (393)
T PLN00096 311 DMDEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGR 369 (393)
T ss_pred HhhhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCC
Confidence 999 895 999999999999999998 66 5699999999999999873
No 31
>KOG1526|consensus
Probab=100.00 E-value=5.6e-35 Score=278.03 Aligned_cols=301 Identities=20% Similarity=0.277 Sum_probs=244.8
Q ss_pred eEEEEecCCCchhHHHHHHHHHHHH----cCCCcceEEEecccccCCCCCC--hHHHHHHHHhcCcEEEecccCCCCCC-
Q psy9726 73 TKCTLIPGDGVGPELVYSVQEVFKA----ANVPVDFEPFFFSEVNPTMSAP--LETVADSIARNGICLKGVLSTPDYSH- 145 (381)
Q Consensus 73 ~~IavipGDGIGpEV~~aa~~VL~a----~~~~i~~~~~~~g~~~~~~~~~--~~etl~~i~~~daiL~G~v~~p~~~~- 145 (381)
..|.-+.|| |+++-..+.++. .-+++++.++|+|-+.++.+++ .-++.++++++++.+||++.||...+
T Consensus 19 ~pvVemdGD----EmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaRv 94 (422)
T KOG1526|consen 19 NPVVEMDGD----EMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEARV 94 (422)
T ss_pred CCeEEeccc----HHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHHH
Confidence 358889999 555555555554 4688999999999999999865 47889999999999999999997422
Q ss_pred -----CcccchhhHHHHHhhcceeecEEe------eecCCCCCC-----------CCCccEEEeccCC-Cceeeccc---
Q psy9726 146 -----TGELQTLNMKLRKALDLYANVVHV------KSLPGVKVR-----------HSNVDCVIIREQT-EGEYSALE--- 199 (381)
Q Consensus 146 -----~~~~~s~~~~LR~~ldlyanvRPv------~~~pg~~~~-----------~~~iDivIvREnt-eG~Y~g~e--- 199 (381)
.+.|+|||.++|+.|+..++-+|+ |+.||+..| ++..|+||-..-+ +=.|...+
T Consensus 95 ~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~ 174 (422)
T KOG1526|consen 95 EEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQ 174 (422)
T ss_pred HHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCc
Confidence 246889999999999999999998 456677543 2345555543322 11222111
Q ss_pred ---cee----eCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-hhCC------
Q psy9726 200 ---HEC----VPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KLYP------ 265 (381)
Q Consensus 200 ---~~~----~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva-~eyp------ 265 (381)
+.. .+|++ ..+.+|.+.++-+|+..|+||.++ +-++++.+|..++|.+||-|.++|+|+. ++|.
T Consensus 175 ~~~~~V~~f~~~G~~-~~m~~~dds~~~FAhssf~~Al~k-k~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~~ 252 (422)
T KOG1526|consen 175 KVTLKVYDFKGSGVA-AMMYNTDDSIRGFAHSSFQYALQK-KWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEAL 252 (422)
T ss_pred ceeEEEEecCCCcee-EEEeeccchhhHHHHHHHHHHHHh-cCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHhh
Confidence 011 13444 356788888999999999999996 6799999999999999999999999996 5664
Q ss_pred CeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCCc--cccccCCcCccccc-----
Q psy9726 266 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPEC--VVFEPGARHTYSEA----- 338 (381)
Q Consensus 266 dI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~~--a~FEp~H~GsApdi----- 338 (381)
+|++||++||+|.+|.+++-++| ||.|.|+.||+-||+.||-.|||||+.|..+.++- -.-|++| ||...-
T Consensus 253 ~IwYEHRLIDDmVAqa~KS~GGf-vwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAH-GTVtRHyr~hq 330 (422)
T KOG1526|consen 253 GIWYEHRLIDDMVAQAMKSEGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAH-GTVTRHYRMHQ 330 (422)
T ss_pred cchhhhhhHHHHHHHHHhcCCce-EEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccc-cchhHHHHHHh
Confidence 79999999999999999999999 99999999999999999999999999999999864 3567799 998863
Q ss_pred cCC-CccChhHHHHHHHHHHhhcC-------chHHHHHHHHHHHHHHHcCC
Q psy9726 339 VGK-NVANPTAMLLCSTKMLSHVN-------LQYYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 339 aGk-~~ANP~a~Ils~ammL~hlg-------~~~~A~~i~~Av~~~l~~G~ 381 (381)
.|+ ...||||.|+||..-|.|.| +..+|+.||+|+..++++|+
T Consensus 331 kG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~ 381 (422)
T KOG1526|consen 331 KGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGK 381 (422)
T ss_pred cCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 354 59999999999999999955 45789999999999999985
No 32
>KOG0784|consensus
Probab=98.19 E-value=1.1e-06 Score=86.22 Aligned_cols=62 Identities=34% Similarity=0.430 Sum_probs=46.6
Q ss_pred ccccCCCceEEEeeCCCCCCcceeeeccccccCCCCceEEEEecCCC---chhHHHHHHHHHHHH
Q psy9726 36 HQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDG---VGPELVYSVQEVFKA 97 (381)
Q Consensus 36 ~~~~~~~~~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~IavipGDG---IGpEV~~aa~~VL~a 97 (381)
++.+++|+++||||||||||||++.+|+++|++++-+...=.+.=.| -+.+..+++..-++.
T Consensus 35 p~~kygg~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~~~~~~~~~~~e~v~Si~r 99 (375)
T KOG0784|consen 35 PPAKYGGRHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSGSNKESSEDLDEAVESIKR 99 (375)
T ss_pred CCcccCCcceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccCCccccchhHHHHHHHHHh
Confidence 36789999999999999999999999999999999886555554444 344444555444443
No 33
>KOG0785|consensus
Probab=97.98 E-value=4.2e-06 Score=81.45 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=43.5
Q ss_pred CceEEEeeCCCCCCcceeeeccccccCCCCc-----eEEEEecCCCchhHHHHHHHHHHHH
Q psy9726 42 GRTKCTLIPGDGVGPELVYSVQEHQSVPEGR-----TKCTLIPGDGVGPELVYSVQEVFKA 97 (381)
Q Consensus 42 ~~~~vt~~pg~gigpe~~~~~~~vfsa~~~~-----~~IavipGDGIGpEV~~aa~~VL~a 97 (381)
+.+||||||||||||||+.+||++|+++..+ ..+.-+-|-.-+.-|.+++++.+++
T Consensus 34 ~~~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~ 94 (365)
T KOG0785|consen 34 KTITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRK 94 (365)
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHh
Confidence 4579999999999999999999999988875 2344444443455677788888876
No 34
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=97.31 E-value=0.00015 Score=73.08 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=46.5
Q ss_pred ccccCCCceEEEeeCCCCCCcceeeeccccccCCCCceEEEEec-CCCchhHHHHHHHHHHHHc
Q psy9726 36 HQSVPEGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP-GDGVGPELVYSVQEVFKAA 98 (381)
Q Consensus 36 ~~~~~~~~~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip-GDGIGpEV~~aa~~VL~a~ 98 (381)
+.+.+++.++|+++||||||||++.++.+++.+.+-+...-.++ |+ .|.-+-+++++.++..
T Consensus 23 ~~~~~~~~~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~-~~~~lp~~~l~~~~~~ 85 (360)
T PLN00123 23 PRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHG-DMKKVPEEVLESIRRN 85 (360)
T ss_pred CcccCCCceEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCC-CCccCCHHHHHHHHHC
Confidence 34455677999999999999999999999999887666666665 43 3545557777777654
No 35
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=97.02 E-value=0.00046 Score=69.87 Aligned_cols=58 Identities=26% Similarity=0.367 Sum_probs=39.2
Q ss_pred CCceEEEeeCCCCCCcceeeeccccccCCCCceEEEEec-CC----CchhHHHHHHHHHHHHc
Q psy9726 41 EGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP-GD----GVGPELVYSVQEVFKAA 98 (381)
Q Consensus 41 ~~~~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip-GD----GIGpEV~~aa~~VL~a~ 98 (381)
...++|+++||||||||++.++.++..+.+-+...-..+ |. --|.-+.+.+++.++..
T Consensus 39 ~~~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~ 101 (372)
T PLN00118 39 STPITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRN 101 (372)
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHC
Confidence 345899999999999999999999999876443333332 21 11333446666666653
No 36
>PRK09222 isocitrate dehydrogenase; Validated
Probab=96.68 E-value=0.0011 Score=69.16 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=31.6
Q ss_pred CceEEEeeCCCCCCcceeeeccccccCCCCceEEEEec
Q psy9726 42 GRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP 79 (381)
Q Consensus 42 ~~~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip 79 (381)
.+++|+++||||||||++.++.+++++.+-+..+-.++
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~ 40 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIE 40 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEc
Confidence 35899999999999999999999999887655554443
No 37
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=96.59 E-value=0.0011 Score=66.42 Aligned_cols=58 Identities=29% Similarity=0.373 Sum_probs=40.8
Q ss_pred CCceEEEeeCCCCCCcceeeeccccccCCCCceEEEEec-C--CCchhHHHHHHHHHHHHc
Q psy9726 41 EGRTKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP-G--DGVGPELVYSVQEVFKAA 98 (381)
Q Consensus 41 ~~~~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip-G--DGIGpEV~~aa~~VL~a~ 98 (381)
+|.++|+++||||||||++.++.++..+.+-+...-..+ | +--|.-+.+++++.++..
T Consensus 1 ~g~~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~g~~lp~~~l~~~~~~ 61 (333)
T TIGR00175 1 GGKYTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQTDGKTEIPDEAVESIKRN 61 (333)
T ss_pred CCcEEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChhhccCCcCCHHHHHHHHHC
Confidence 467899999999999999999999999876443333332 3 223334556676666654
No 38
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=96.47 E-value=0.0018 Score=64.92 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=37.2
Q ss_pred eEEEeeCCCCCCcceeeeccccccCCCCceEEEEec-CCC----chhHHHHHHHHHHHH
Q psy9726 44 TKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP-GDG----VGPELVYSVQEVFKA 97 (381)
Q Consensus 44 ~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip-GDG----IGpEV~~aa~~VL~a 97 (381)
++|++|||||||||++.++.++.++.+-+......+ |.. -|.-+-+++++.++.
T Consensus 3 ~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~ 61 (334)
T PRK08997 3 QTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEK 61 (334)
T ss_pred cEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHH
Confidence 689999999999999999999999776554444443 210 133344555555554
No 39
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=96.34 E-value=0.0022 Score=66.74 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=28.9
Q ss_pred EEEeeCCCCCCcceeeeccccccCCCCceEEEEec
Q psy9726 45 KCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP 79 (381)
Q Consensus 45 ~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip 79 (381)
+|+++||||||||++.++.++.++.+-+..+-.++
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~ 36 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIE 36 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 69999999999999999999999876555444443
No 40
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=96.31 E-value=0.002 Score=64.96 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=38.0
Q ss_pred ceEEEeeCCCCCCcceeeeccccccCCCCc---eEEEEecCC-Cc------hhHHHHHHHHHHHH
Q psy9726 43 RTKCTLIPGDGVGPELVYSVQEHQSVPEGR---TKCTLIPGD-GV------GPELVYSVQEVFKA 97 (381)
Q Consensus 43 ~~~vt~~pg~gigpe~~~~~~~vfsa~~~~---~~IavipGD-GI------GpEV~~aa~~VL~a 97 (381)
.++|+++||||||||++.++.++.++...+ ..+-+.+.| |- |.-+-+++++.++.
T Consensus 3 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~ 67 (352)
T TIGR02089 3 QYRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKK 67 (352)
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHh
Confidence 478999999999999999999999877532 345555444 21 33344555555554
No 41
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=96.24 E-value=0.0029 Score=63.24 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=28.3
Q ss_pred eEEEeeCCCCCCcceeeeccccccCCCCceEEEEe
Q psy9726 44 TKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLI 78 (381)
Q Consensus 44 ~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavi 78 (381)
++|++|||||||||++.++.+++++.+-+......
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~ 36 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYA 36 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEE
Confidence 58999999999999999999999977544333333
No 42
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.0012 Score=65.82 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=37.8
Q ss_pred ceEEEeeCCCCCCcceeeeccccccCCCCc-eEEEEecCC-------CchhHHHHHHHHHHHH
Q psy9726 43 RTKCTLIPGDGVGPELVYSVQEHQSVPEGR-TKCTLIPGD-------GVGPELVYSVQEVFKA 97 (381)
Q Consensus 43 ~~~vt~~pg~gigpe~~~~~~~vfsa~~~~-~~IavipGD-------GIGpEV~~aa~~VL~a 97 (381)
.++|++|||||||||++.++.+|+++.... ..+-....| --|.-+-+++++.++.
T Consensus 3 ~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~ 65 (348)
T COG0473 3 TYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKK 65 (348)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHh
Confidence 589999999999999999999999988841 123222222 1344445566666664
No 43
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=96.10 E-value=0.0033 Score=63.56 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=37.2
Q ss_pred eEEEeeCCCCCCcceeeeccccccCCCC--ceEEEEecCCCchh--------HHHHHHHHHHHH
Q psy9726 44 TKCTLIPGDGVGPELVYSVQEHQSVPEG--RTKCTLIPGDGVGP--------ELVYSVQEVFKA 97 (381)
Q Consensus 44 ~~vt~~pg~gigpe~~~~~~~vfsa~~~--~~~IavipGDGIGp--------EV~~aa~~VL~a 97 (381)
++|++|||||||||++.++.++.++... ...|-...-| +|- -+-+++++.++.
T Consensus 3 ~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~-~G~~~~~~~G~~lp~~tl~~~~~ 65 (358)
T PRK00772 3 YKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEAL-VGGAAIDAHGVPLPEETLEACRA 65 (358)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEec-CcHHHHHHHCCCCCHHHHHHHHH
Confidence 6899999999999999999999986643 2345444444 333 333556666664
No 44
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=96.08 E-value=0.0032 Score=63.33 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=37.3
Q ss_pred ceEEEeeCCCCCCcceeeeccccccCCCC-ceEEEEecCCCchh--------HHHHHHHHHHHHc
Q psy9726 43 RTKCTLIPGDGVGPELVYSVQEHQSVPEG-RTKCTLIPGDGVGP--------ELVYSVQEVFKAA 98 (381)
Q Consensus 43 ~~~vt~~pg~gigpe~~~~~~~vfsa~~~-~~~IavipGDGIGp--------EV~~aa~~VL~a~ 98 (381)
+++|+++||||||||++.++.+++.+... ...|-+.+-| +|- -+-+++++.++..
T Consensus 4 ~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~-~G~~~~~~~G~~lp~~tl~~~~~~ 67 (344)
T PRK03437 4 TMKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYD-LGARRYLRTGETLPDSVLAELRQH 67 (344)
T ss_pred eEEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEe-CCHHHHHHHCCcCCHHHHHHHHHC
Confidence 47999999999999999999999986632 2344444443 333 3445555555543
No 45
>PRK08194 tartrate dehydrogenase; Provisional
Probab=96.04 E-value=0.0035 Score=63.22 Aligned_cols=56 Identities=25% Similarity=0.244 Sum_probs=37.8
Q ss_pred ceEEEeeCCCCCCcceeeeccccccCCCC---ceEEEEecCC-Cc------hhHHHHHHHHHHHHc
Q psy9726 43 RTKCTLIPGDGVGPELVYSVQEHQSVPEG---RTKCTLIPGD-GV------GPELVYSVQEVFKAA 98 (381)
Q Consensus 43 ~~~vt~~pg~gigpe~~~~~~~vfsa~~~---~~~IavipGD-GI------GpEV~~aa~~VL~a~ 98 (381)
.++|+++||||||||++.++.++.++.+. .+.+-+.+-| |- |--+-+++++.++..
T Consensus 3 ~~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~ 68 (352)
T PRK08194 3 QFKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQF 68 (352)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhC
Confidence 47899999999999999999999987643 2334433333 11 333445666666653
No 46
>PLN02329 3-isopropylmalate dehydrogenase
Probab=95.77 E-value=0.0029 Score=64.83 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=38.4
Q ss_pred ceEEEeeCCCCCCcceeeeccccccCCCCc--eEEEEecCCCch--------hHHHHHHHHHHHHc
Q psy9726 43 RTKCTLIPGDGVGPELVYSVQEHQSVPEGR--TKCTLIPGDGVG--------PELVYSVQEVFKAA 98 (381)
Q Consensus 43 ~~~vt~~pg~gigpe~~~~~~~vfsa~~~~--~~IavipGDGIG--------pEV~~aa~~VL~a~ 98 (381)
.++|++|||||||||++.++.+++.+.+.+ +.+-+.+.| +| .-+-+++++.++..
T Consensus 46 ~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~-~G~~~~~~~G~~lP~~tl~~~~~~ 110 (409)
T PLN02329 46 RYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMP-VGGAALDLVGVPLPEETFTAAKQS 110 (409)
T ss_pred eEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEc-CCHHHHHHhCCcCCHHHHHHHHHC
Confidence 578999999999999999999999876542 345444443 33 33445566666543
No 47
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=95.63 E-value=0.0062 Score=60.79 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=35.0
Q ss_pred EEeeCCCCCCcceeeeccccccCCCCceEEEEecCCCchhH--------HHHHHHHHHHH
Q psy9726 46 CTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPE--------LVYSVQEVFKA 97 (381)
Q Consensus 46 vt~~pg~gigpe~~~~~~~vfsa~~~~~~IavipGDGIGpE--------V~~aa~~VL~a 97 (381)
|+++||||||||++.++.+++++++-+..+..+ | +|-+ +.+.+++.++.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~--~-~G~~~~~~~G~~lp~~~l~~~~~ 57 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEF--E-AGDEALKKYGSALPEDTLEEIRK 57 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEE--e-CCHHHHHHhCCCCCHHHHHHHHH
Confidence 589999999999999999999977644444444 3 4443 44556665554
No 48
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=95.44 E-value=0.0066 Score=61.20 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=35.1
Q ss_pred EEEeeCCCCCCcceeeeccccccCCCC--ceEEEEecCCCchhH--------HHHHHHHHHHH
Q psy9726 45 KCTLIPGDGVGPELVYSVQEHQSVPEG--RTKCTLIPGDGVGPE--------LVYSVQEVFKA 97 (381)
Q Consensus 45 ~vt~~pg~gigpe~~~~~~~vfsa~~~--~~~IavipGDGIGpE--------V~~aa~~VL~a 97 (381)
+|++|||||||||++.++.+++++... ...|-+.+-| +|-+ +-+++++.++.
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~-~G~~~~~~~G~~lp~~tl~~~~~ 62 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHL-IGGAAIDATGQPLPEETLKACKE 62 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEe-CCHHHHHHHCCCCCHHHHHHHHH
Confidence 589999999999999999999986642 1344444433 3333 33555555654
No 49
>PRK06451 isocitrate dehydrogenase; Validated
Probab=95.37 E-value=0.0081 Score=61.75 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=36.6
Q ss_pred EEeeCCCCCCcceeeeccccccCCC-----CceEEEEecCCCchh--------HHHHHHHHHHHHc
Q psy9726 46 CTLIPGDGVGPELVYSVQEHQSVPE-----GRTKCTLIPGDGVGP--------ELVYSVQEVFKAA 98 (381)
Q Consensus 46 vt~~pg~gigpe~~~~~~~vfsa~~-----~~~~IavipGDGIGp--------EV~~aa~~VL~a~ 98 (381)
|++|||||||||++.+++++..+.. +...|-..+-+ +|- -+.+++++.++..
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~-~G~~~~~~~G~~lp~etl~~ik~~ 90 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVL-AGDKAEKLTGNRFPKESEELIEKY 90 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEc-CCHHHHHHhCCcCCHHHHHHHHHC
Confidence 9999999999999999999998542 22355554443 333 3556676666654
No 50
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=95.11 E-value=0.65 Score=49.57 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=104.9
Q ss_pred cceeeCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhC--CCeEEeEEe-HH
Q psy9726 199 EHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY--PKIQFEQMI-VD 275 (381)
Q Consensus 199 e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~ey--pdI~~~~~~-vD 275 (381)
+|.+..|-....+-.-...++-.++.|.+.|+..|-.-|.-.|+.-. -|.-..+-+++.-++| .++++.-|- +|
T Consensus 443 eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa~lI~kV~~yL~~hdt~gldi~Im~P~~ 519 (735)
T PF03971_consen 443 EHEVEAGDIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDAELIKKVEKYLKDHDTSGLDIRIMSPVE 519 (735)
T ss_dssp EEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHHHHHHHHHHHHTTS--TT--EEEE-HHH
T ss_pred EeeecCCcchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHHHHHHHHHHHHHhcCCCCCceEeeCHHH
Confidence 34455555555556567778999999999999876555666665422 2433334444444555 356666665 46
Q ss_pred HHHHHHHhCCCCcc-EEEcCCcchhHHHHhhhhhc-C-C---cccccccccCCCccccccCCcCcccccc----CCC--c
Q psy9726 276 NCTMQIVSNPHQFD-VMVMPNLYGNIVDNLASGLV-G-G---AGVVAGASWSPECVVFEPGARHTYSEAV----GKN--V 343 (381)
Q Consensus 276 ~~~~~lv~~P~~fd-Vivt~Nl~GDILSDlaa~l~-G-s---lGl~psanig~~~a~FEp~H~GsApdia----Gk~--~ 343 (381)
++-..|-+=-.+-| +=||.|..-|+|+||.--|= | | |-+.|=-| +-+|||...-||||... -+| .
T Consensus 520 A~~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~---GGGLFETGAGGSAPKHVqQf~eEnhLR 596 (735)
T PF03971_consen 520 ATRFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN---GGGLFETGAGGSAPKHVQQFVEENHLR 596 (735)
T ss_dssp HHHHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT---S-EEEES-SS---HHHHHHHCCCS---
T ss_pred HHHHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc---CCceeccCCCCCccHHHHHHHHcCccc
Confidence 66666655445556 66999999999999986542 2 1 22223332 34899995548999853 334 6
Q ss_pred cChhHHHHHHHHHHhhcCch-------HHHHHHHHHHHHHHHcCC
Q psy9726 344 ANPTAMLLCSTKMLSHVNLQ-------YYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 344 ANP~a~Ils~ammL~hlg~~-------~~A~~i~~Av~~~l~~G~ 381 (381)
=+-+|-+||.+--|+||+.. --|+.|.+|+.+.|+++|
T Consensus 597 WDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~k 641 (735)
T PF03971_consen 597 WDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENNK 641 (735)
T ss_dssp --THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999998753 347889999999998765
No 51
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=94.90 E-value=0.028 Score=56.16 Aligned_cols=134 Identities=10% Similarity=0.110 Sum_probs=81.1
Q ss_pred eeecHHHHHHHHHHHHHHHHhCC--CCcEEE-EEcCCccccccHHH-HHHHHHH-------HhhCCCeEE-eEEeHHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNN--RKKVTA-VHKANIMKLGDGLF-LNSCKEM-------AKLYPKIQF-EQMIVDNCT 278 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~--~k~Vt~-v~KaNv~~~tdglf-~~~~~ev-------a~eypdI~~-~~~~vD~~~ 278 (381)
+.+|.+.+.+.++.+.+.-++-+ +-|+-+ .=..+.-. .|+| +|.-+.+ .++ ++++ -..-.|++-
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAi~~~~~~--G~~v~GP~paDt~F 251 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGE--NGLFGDEEIRIVTPAIEAMRAK--GMDVYGPCPPDTVF 251 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhhc
Confidence 46688888888777766555322 112322 22222222 4677 4332222 222 3332 344456665
Q ss_pred HHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHHH
Q psy9726 279 MQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 356 (381)
Q Consensus 279 ~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~amm 356 (381)
.+-.+ ++||++|+- --|++--=.-.+++--+.|+--+ .---.|-| |||-||||||+|||.+|+-|.-+.
T Consensus 252 ~~~~~--~~~D~vvaM------YHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DH-GTAfDIAGkG~A~~~S~~~Ai~lA 322 (326)
T PRK03371 252 LQAYE--GQYDMVVAM------YHDQGHIPLKLLGFYDGVNITAGLPFIRTSADH-GTAFDIAWTGKAKSESMAVSIKLA 322 (326)
T ss_pred ccccc--cCCCEEEEc------cccccchhheecccccceEEecCCCeeEecCCC-CchhhhhcCCcCCHHHHHHHHHHH
Confidence 44433 579988884 34666555667777777787432 33346788 999999999999999999887765
Q ss_pred H
Q psy9726 357 L 357 (381)
Q Consensus 357 L 357 (381)
.
T Consensus 323 ~ 323 (326)
T PRK03371 323 M 323 (326)
T ss_pred H
Confidence 4
No 52
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=94.73 E-value=0.032 Score=55.91 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=84.4
Q ss_pred eeecHHHHHHHHHHHHHHHHhCC--CCcEE-EEEcCCccccccHHH-HHHHHHH----H-hhCCCeEE-eEEeHHHHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNN--RKKVT-AVHKANIMKLGDGLF-LNSCKEM----A-KLYPKIQF-EQMIVDNCTMQ 280 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~--~k~Vt-~v~KaNv~~~tdglf-~~~~~ev----a-~eypdI~~-~~~~vD~~~~~ 280 (381)
+.+|.+.+.+.++.+.+.-++-+ +-|+- +.=..+.-. .|+| +|.-+.+ . .+-.++++ -.+-.|++-.+
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~g~~v~GP~paDt~F~~ 254 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSGE--HGLFGDEEVDEIIPAVEAAQEMGINVEGPVPADSVFHL 254 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHCCCcccCCCCchhhccc
Confidence 46788889888888887666432 12232 222222222 4566 3322221 1 01123332 34445766655
Q ss_pred HHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHHHHh
Q psy9726 281 IVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLS 358 (381)
Q Consensus 281 lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL~ 358 (381)
-.+ +.||++|+- .-|++---.-.++.--+.|+--+ .---.|-| |||-||||||+|||.+|+.|.-+..+
T Consensus 255 ~~~--~~~D~vvaM------YHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DH-GTAfDIAGkg~A~~~S~~~Ai~lA~~ 325 (332)
T PRK03743 255 ALQ--GRYDAVLSL------YHDQGHIATKTLDFERTIAITNGLPFLRTSVDH-GTAFDIAGTGKASSVSMEEAILLAAK 325 (332)
T ss_pred ccc--cCCCEEEEc------ccccCChhheecccCCceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHHH
Confidence 444 579999884 34666666677777777787432 33456789 99999999999999999988877554
Q ss_pred h
Q psy9726 359 H 359 (381)
Q Consensus 359 h 359 (381)
.
T Consensus 326 ~ 326 (332)
T PRK03743 326 Y 326 (332)
T ss_pred H
Confidence 3
No 53
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=94.72 E-value=0.036 Score=55.52 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=81.9
Q ss_pred eeecHHHHHHHHHHHHHHHHhCCC--CcEEEEEcCCccccccHHH-HHHHH-------HHHhhCCCeEE-eEEeHHHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNNR--KKVTAVHKANIMKLGDGLF-LNSCK-------EMAKLYPKIQF-EQMIVDNCTM 279 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~~--k~Vt~v~KaNv~~~tdglf-~~~~~-------eva~eypdI~~-~~~~vD~~~~ 279 (381)
+.+|.+.+.+.+|.+-+.-++.+- -|+-+. =-|==.--.|+| +|.-+ +..++ ++.+ -..-.|++-.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~-gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~F~ 253 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAVC-GLNPHAGEGGHFGREEIDIIIPALEELRAE--GINLVGPLPADTLFQ 253 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEE-eeCCCCCCCCCCCHHHHHHHHHHHHHHHhC--CCCcCCCCCchhhcc
Confidence 467888888888888775553231 123222 112211113566 33222 22222 2322 3444576655
Q ss_pred HHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHHHH
Q psy9726 280 QIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 357 (381)
Q Consensus 280 ~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL 357 (381)
+-.+ +.||++|+- | -|++--=.-.+++--+.|+--+ .---.|-| |||-||||||+|||.+|+-|.-+..
T Consensus 254 ~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~DH-GTAfDIAGkg~A~~~S~~~Ai~lA~ 324 (332)
T PRK00232 254 PAYL--GDADAVLAM--Y----HDQGLPVLKYLGFGRGVNITLGLPFIRTSVDH-GTALDLAGKGIADVGSFITALNLAI 324 (332)
T ss_pred cccc--CCCCEEEEC--c----ccccchhheecccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHHH
Confidence 5443 579988884 2 4666555667777777777432 23356788 9999999999999999998887755
Q ss_pred hh
Q psy9726 358 SH 359 (381)
Q Consensus 358 ~h 359 (381)
+.
T Consensus 325 ~~ 326 (332)
T PRK00232 325 RM 326 (332)
T ss_pred HH
Confidence 43
No 54
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.68 E-value=0.033 Score=56.02 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=85.9
Q ss_pred eeecHHHHHHHHHHHHHHHHh-CC--CCcEEEE-EcCCccccccHHH-HH-------HHHHHHhhCCCeEEe-EEeHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATK-NN--RKKVTAV-HKANIMKLGDGLF-LN-------SCKEMAKLYPKIQFE-QMIVDNC 277 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~-r~--~k~Vt~v-~KaNv~~~tdglf-~~-------~~~eva~eypdI~~~-~~~vD~~ 277 (381)
+.+|.+.+.+-++.+.+.-++ -+ +-||-+. =..+.-. .|+| +| ..++..++.+++.++ ..-.|++
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAIe~~r~~g~g~~v~GP~paDt~ 256 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAGE--QGQLGTEEKDWLIPWLESWRQKNPDIQLLGPIPPDTC 256 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHhcCCCceeeCCCCchhh
Confidence 456888888777777665542 22 2233322 1222222 3565 32 223333343345443 4456887
Q ss_pred HHHHHhC------CCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHH
Q psy9726 278 TMQIVSN------PHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAM 349 (381)
Q Consensus 278 ~~~lv~~------P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~ 349 (381)
-.+-.+. .+.||++|+- | -|++--=.-.+++--+.|+--+ +---.|-| |||-||||||+|||.+|
T Consensus 257 F~~~~~~~~~~~~~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DH-GTAfDIAGkg~A~~~S~ 329 (345)
T PRK02746 257 WVSPAQAWYGKGVAEAPDGYLAL--Y----HDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDH-GTAFDIAGKGIARPQSM 329 (345)
T ss_pred ccccccccccccccCCCCEEEEC--c----ccCCChhheeeccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHH
Confidence 7665542 2579999984 3 4666666677777778887432 33346788 99999999999999999
Q ss_pred HHHHHHHHhh
Q psy9726 350 LLCSTKMLSH 359 (381)
Q Consensus 350 Ils~ammL~h 359 (381)
+-|.-+..+.
T Consensus 330 ~~Ai~lA~~l 339 (345)
T PRK02746 330 KAAIKLAWEL 339 (345)
T ss_pred HHHHHHHHHH
Confidence 9888765443
No 55
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=94.67 E-value=0.016 Score=59.76 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.5
Q ss_pred EEEeeCCCCCCcceeeeccccccCCC
Q psy9726 45 KCTLIPGDGVGPELVYSVQEHQSVPE 70 (381)
Q Consensus 45 ~vt~~pg~gigpe~~~~~~~vfsa~~ 70 (381)
.|++|||||||||++.++.+++.+..
T Consensus 28 ~I~vipGDGIGpEv~~~a~~vl~a~~ 53 (416)
T TIGR00183 28 IIPYIEGDGIGVDVTPAAIKVLDAAV 53 (416)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHH
Confidence 39999999999999999999998554
No 56
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=94.59 E-value=0.036 Score=55.49 Aligned_cols=137 Identities=9% Similarity=0.030 Sum_probs=85.1
Q ss_pred eeecHHHHHHHHHHHHHHHHh-CC--CCcEEE-EEcCCccccccHHH-HHHHHHH------HhhCCCeEE-eEEeHHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATK-NN--RKKVTA-VHKANIMKLGDGLF-LNSCKEM------AKLYPKIQF-EQMIVDNCT 278 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~-r~--~k~Vt~-v~KaNv~~~tdglf-~~~~~ev------a~eypdI~~-~~~~vD~~~ 278 (381)
+.+|.+.+.+.++.+.+.-++ -+ +-|+-+ .=..+.-. +|+| +|.-+.+ +++ .++.+ -.+-.|++-
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAi~~~~~-~Gi~v~GP~paDt~F 248 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAGE--NGYLGREEIDVIEPALARARA-AGIDARGPYPADTLF 248 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHH-CCCCccCCCCchhhc
Confidence 467899999888888886663 22 123322 22222222 4666 4322222 111 23332 345567776
Q ss_pred HHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHHH
Q psy9726 279 MQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKM 356 (381)
Q Consensus 279 ~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~amm 356 (381)
.+-.+ +.||++|+- --|++---.-.+++--+.|+--+ +---.|-| |||-||||||+|||.+|+-|.-+.
T Consensus 249 ~~~~~--~~~D~vvaM------YHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDH-GTAfDIAGkg~A~~~S~~~Ai~lA 319 (329)
T PRK01909 249 QPRYL--EDADCVLAM------FHDQGLPVLKYATFGEGINVTLGLPIIRTSVDH-GTALDLAGTGRADPGSMIAAIDTA 319 (329)
T ss_pred ccccc--cCCCEEEEc------cccccchhheecccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHHH
Confidence 55544 479999884 34676666677777778887432 33356788 999999999999999999887765
Q ss_pred Hhh
Q psy9726 357 LSH 359 (381)
Q Consensus 357 L~h 359 (381)
.+.
T Consensus 320 ~~~ 322 (329)
T PRK01909 320 VTM 322 (329)
T ss_pred HHH
Confidence 443
No 57
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=94.45 E-value=0.042 Score=54.83 Aligned_cols=134 Identities=11% Similarity=0.101 Sum_probs=81.1
Q ss_pred eeecHHHHHHHHHHHHHHHHh-CC--CCcEEE-EEcCCccccccHHH-HHHH-------HHHHhhCCCeEE-eEEeHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATK-NN--RKKVTA-VHKANIMKLGDGLF-LNSC-------KEMAKLYPKIQF-EQMIVDNC 277 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~-r~--~k~Vt~-v~KaNv~~~tdglf-~~~~-------~eva~eypdI~~-~~~~vD~~ 277 (381)
+.+|.+.+.+-++.+.+.-++ -+ +-|+-+ .=..+.-. .|+| +|.- ++..++ ++.+ -..-.|++
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--G~~v~GP~paDt~ 244 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAGE--GGHLGREEIDIIIPALEALRAE--GIDLIGPLPADTL 244 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCcccCCCCchhh
Confidence 457888888888888876663 22 223322 22222222 3566 3222 222222 2322 23445666
Q ss_pred HHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHH
Q psy9726 278 TMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTK 355 (381)
Q Consensus 278 ~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~am 355 (381)
-.+-.+ +.||++|+- .-|++--=.-.++.--+.|+--+ .---.|-| |||-||||||+|||.+|+.|.-+
T Consensus 245 F~~~~~--~~~D~vvaM------YHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DH-GTAfDIAGkg~A~~~S~~~Ai~~ 315 (320)
T TIGR00557 245 FHPAAL--AKYDAVLAM------YHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDH-GTAFDIAGKGKADPGSLIAAIKL 315 (320)
T ss_pred cccccc--cCCCEEEEC------cccccchhheecccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHH
Confidence 544322 579988884 34666655667777777776432 23346788 99999999999999999888766
Q ss_pred HH
Q psy9726 356 ML 357 (381)
Q Consensus 356 mL 357 (381)
..
T Consensus 316 A~ 317 (320)
T TIGR00557 316 AI 317 (320)
T ss_pred HH
Confidence 44
No 58
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=94.30 E-value=0.022 Score=58.58 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=22.6
Q ss_pred EEeeCCCCCCcceeeeccccccCC
Q psy9726 46 CTLIPGDGVGPELVYSVQEHQSVP 69 (381)
Q Consensus 46 vt~~pg~gigpe~~~~~~~vfsa~ 69 (381)
|++|||||||||++.++.+++.+.
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~ 45 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAA 45 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHH
Confidence 999999999999999999999854
No 59
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.29 E-value=0.048 Score=54.10 Aligned_cols=134 Identities=11% Similarity=0.075 Sum_probs=80.8
Q ss_pred eeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHH-HH------HHHHHHhhCCCeEEe--EEeHHHHHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLF-LN------SCKEMAKLYPKIQFE--QMIVDNCTMQI 281 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf-~~------~~~eva~eypdI~~~--~~~vD~~~~~l 281 (381)
+.+|.+.+.+-++...+.-+ ..|--|.-.. .+.-. .|+| +| ..++..++ -++.++ ..-.|++-.+-
T Consensus 157 ~~it~~~i~~~i~~~~~~l~-~PrIaV~gLN-PHAGE--~G~~G~EE~iI~PAi~~~~~~-~g~~~~~GP~paDt~F~~~ 231 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK-FKKIGVLGLN-PHAGD--NGVIGGEEEEIKKAIKKANQF-LGFEIFFGPLVPDSAFTPN 231 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc-CCCEEEEeeC-CCCCC--CCCCCcchHHHHHHHHHHHHh-cCCCcccCCcCchhhcccc
Confidence 45688888877776665433 3221222222 22211 2444 22 22222211 144444 66778776554
Q ss_pred HhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCC-ccChhHHHHHHHHHHh
Q psy9726 282 VSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKN-VANPTAMLLCSTKMLS 358 (381)
Q Consensus 282 v~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~-~ANP~a~Ils~ammL~ 358 (381)
.+ ..||++|+- | -|++--=.-.+++--+.|+--+ +---.|-| |||-|||||| +|||.+|+-|.-+..+
T Consensus 232 ~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVnvTlGLP~iRTSpDH-GTAfDIAGkg~~A~~~S~~~Ai~lA~~ 302 (307)
T PRK03946 232 KR--KKFNYYVAM--Y----HDQGLAPLKALYFDESINVSLNLPILRTSVDH-GTAFDIAYKNAKANTKSYLNAIKYAIN 302 (307)
T ss_pred cc--cCCCEEEEC--c----cccCchhheeeccCcceEEecCCCEeEecCCC-CchhhhcCCCCcCCHHHHHHHHHHHHH
Confidence 33 689999984 3 4666555667777777776432 33346788 9999999999 9999999988776544
No 60
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=94.24 E-value=0.048 Score=54.72 Aligned_cols=136 Identities=11% Similarity=0.089 Sum_probs=82.7
Q ss_pred eeecHHHHHHHHHHHHHHHHh-CCC--CcEEEE-EcCCccccccHHH-HHHH-------HHHHhhCCCeEE-eEEeHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATK-NNR--KKVTAV-HKANIMKLGDGLF-LNSC-------KEMAKLYPKIQF-EQMIVDNC 277 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~-r~~--k~Vt~v-~KaNv~~~tdglf-~~~~-------~eva~eypdI~~-~~~~vD~~ 277 (381)
+.+|.+.+.+.++.+.+.-++ -+. -|+-+. =..+.-. .|+| +|.- ++..++ ++.+ -..-.|++
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAGE--~G~~G~EE~~iI~PAI~~~~~~--Gi~v~GP~paDt~ 256 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAGE--GGALGREDIDIIAPAIEQLRAE--GIDARGPLPADTM 256 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCCC--CCCCcHHHHHHHHHHHHHHHHC--CCCccCCCCchhh
Confidence 467888898888888886663 221 133322 1222222 4666 3322 222222 3322 34445666
Q ss_pred HHHHHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHH
Q psy9726 278 TMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTK 355 (381)
Q Consensus 278 ~~~lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~am 355 (381)
-.+-.. ..||++|+- --|++---.-.++.--+.|+--+ .---.|-| |||-||||||+|||.+|+-|.-+
T Consensus 257 F~~~~~--~~~D~vvaM------YHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDH-GTAfDIAGkg~A~~~S~~~Ai~l 327 (336)
T PRK05312 257 FHAAAR--ATYDAAICM------YHDQALIPIKTLDFDGGVNVTLGLPFIRTSPDH-GTAFDIAGKGIARPDSLIAALRL 327 (336)
T ss_pred cccccc--cCCCEEEEc------ccccCChhheecccCcceEEecCCCeeEeCCCC-cchhhhhcCCCCCHHHHHHHHHH
Confidence 554333 579988884 34666555667777777776432 23346778 99999999999999999988877
Q ss_pred HHhh
Q psy9726 356 MLSH 359 (381)
Q Consensus 356 mL~h 359 (381)
..+.
T Consensus 328 A~~~ 331 (336)
T PRK05312 328 AAQM 331 (336)
T ss_pred HHHH
Confidence 5543
No 61
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=94.03 E-value=0.0041 Score=62.71 Aligned_cols=53 Identities=30% Similarity=0.442 Sum_probs=38.0
Q ss_pred EEEeeCCCCCCcceeeeccccccCCCCc--eEEEEecCCCchhH--------HHHHHHHHHHHc
Q psy9726 45 KCTLIPGDGVGPELVYSVQEHQSVPEGR--TKCTLIPGDGVGPE--------LVYSVQEVFKAA 98 (381)
Q Consensus 45 ~vt~~pg~gigpe~~~~~~~vfsa~~~~--~~IavipGDGIGpE--------V~~aa~~VL~a~ 98 (381)
||+++||||||||++.++.++.++.+.+ .++-+...| +|.+ +.+++++.++..
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~-~G~~~~~~~g~~lp~et~~~i~~~ 63 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFD-IGGEAYDKTGEPLPDETLEAIKRA 63 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEE-TSHHHHHHHSSSSHHHHHHHHHHC
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhccccccccccc-chhhhhhhccccccHHHHHHHhhc
Confidence 7999999999999999999999998843 455555544 3333 344555555554
No 62
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=94.02 E-value=0.036 Score=54.82 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=73.9
Q ss_pred eeecHHHHHHHHHHHHHHHHh-CC--CCcEEEEEcCCccccccHHHH-H----HHHHHH-hhCCCeEEe-EEeHHHHHHH
Q psy9726 211 KIVTAEKSRRIAKFAFDYATK-NN--RKKVTAVHKANIMKLGDGLFL-N----SCKEMA-KLYPKIQFE-QMIVDNCTMQ 280 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~-r~--~k~Vt~v~KaNv~~~tdglf~-~----~~~eva-~eypdI~~~-~~~vD~~~~~ 280 (381)
..+|.+.+.+.++...+.-++ -| +-|+-+. =-|-=.--.|+|= | +.-.+. .+-.+|.+. ..-.|++-.+
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~-gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~GP~paDt~F~~ 228 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVA-GLNPHAGEGGLFGREEIEIIIPAIEEARAEGIDVFGPYPADTVFGK 228 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE--SSGGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEEEEE-HHHHTSH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEE-EeCCCCCCCCCCcHhHHHHHHHHHHHHHhCCCceECCCccHHhhhc
Confidence 466888888888777665544 22 1233332 2232221145552 1 222221 112456544 4446776544
Q ss_pred HHhCCCCccEEEcCCcchhHHHHhhhhhcCCcccccccccCC--CccccccCCcCccccccCCCccChhHHHHHHHH
Q psy9726 281 IVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSP--ECVVFEPGARHTYSEAVGKNVANPTAMLLCSTK 355 (381)
Q Consensus 281 lv~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~--~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~am 355 (381)
- .-++||++|+ || -|++--=.-.++.--+.|+-- ..----|-| |||-||||||+|||.+|+.|.-+
T Consensus 229 ~--~~~~fD~vva--MY----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~DH-GTAfDIAGkg~A~~~s~~~Ai~~ 296 (298)
T PF04166_consen 229 A--NRGKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDH-GTAFDIAGKGIADPSSMIEAIKL 296 (298)
T ss_dssp H--HHTT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEEESSSSEEEEESS--S-CCGTTTTTS-THHHHHHHHH
T ss_pred c--hhccCCEEEE--ee----cccCccceeecccccceEEecCCCeeeecCCC-CchhhhhCCCCCChHHHHHHHHH
Confidence 4 4578999998 44 456554455555556666632 233456789 99999999999999999988765
No 63
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=93.85 E-value=1.2 Score=47.67 Aligned_cols=185 Identities=17% Similarity=0.171 Sum_probs=115.7
Q ss_pred cCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCC--C
Q psy9726 189 EQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYP--K 266 (381)
Q Consensus 189 EnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eyp--d 266 (381)
+.++..+. +|.+..|-....+-.-...++-.++.|.+.|+..|-.-|.-.|+.-.= |.-...-++..-++|- +
T Consensus 439 d~~G~vl~--eh~Ve~GDIwRmcq~KD~pI~DWVkLAV~Rar~sg~pavFWLD~~RaH---Da~lI~kV~~yL~~hdt~g 513 (741)
T TIGR00178 439 DSSGEVLL--EQSVEAGDIWRMCQVKDAPIQDWVKLAVTRARATGTPAVFWLDPARAH---DAQLIKKVETYLKDHDTEG 513 (741)
T ss_pred eCCCCEEE--EeeccCCcchhhhhccCchHHHHHHHHHHHHHhcCCCeEEEeCCCchh---HHHHHHHHHHHHHhcCCCC
Confidence 33444444 344444433333333345578889999999998865556666554221 3222223333334442 5
Q ss_pred eEEeEEe-HHHHHHHHHhCCCCcc-EEEcCCcchhHHHHhhhhhc-C-C---cccccccccCCCccccccCCcCcccccc
Q psy9726 267 IQFEQMI-VDNCTMQIVSNPHQFD-VMVMPNLYGNIVDNLASGLV-G-G---AGVVAGASWSPECVVFEPGARHTYSEAV 339 (381)
Q Consensus 267 I~~~~~~-vD~~~~~lv~~P~~fd-Vivt~Nl~GDILSDlaa~l~-G-s---lGl~psanig~~~a~FEp~H~GsApdia 339 (381)
+++.-|- ++++-..|=+=-.+-| +=||.|..-|+|+||.--|= | | |-+.|=-| +-+|||...-||||...
T Consensus 514 ldi~Im~p~~A~~~slerir~G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---GGGLFETGAGGSAPKHV 590 (741)
T TIGR00178 514 LDIQILSPVEATRFSLARIRRGEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GGGLFETGAGGSAPKHV 590 (741)
T ss_pred CceEeeCHHHHHHHHHHHHHcCCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---CCceecCCCCCCccHHH
Confidence 5666665 4666566645445556 66999999999999986542 2 1 11222222 34899995548999854
Q ss_pred ----CCC--ccChhHHHHHHHHHHhhcCch-------HHHHHHHHHHHHHHHcCC
Q psy9726 340 ----GKN--VANPTAMLLCSTKMLSHVNLQ-------YYGDMIRNAVNRVLKAGK 381 (381)
Q Consensus 340 ----Gk~--~ANP~a~Ils~ammL~hlg~~-------~~A~~i~~Av~~~l~~G~ 381 (381)
-+| .=+-+|-+|+.+-=|+||+.. --|+.|.+|+.+.|+++|
T Consensus 591 qQf~eEnhLRWDSLGEFlALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~k 645 (741)
T TIGR00178 591 QQFLEENHLRWDSLGEFLALAASLEHLGNATGNPKALVLADTLDAATGKLLDNNK 645 (741)
T ss_pred HHHHHcCcccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCCC
Confidence 233 667899999999999998753 237888899988888765
No 64
>PRK07362 isocitrate dehydrogenase; Validated
Probab=93.44 E-value=0.016 Score=60.02 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.5
Q ss_pred CCCceEEEeeCCCCCCcceeeeccccccCC
Q psy9726 40 PEGRTKCTLIPGDGVGPELVYSVQEHQSVP 69 (381)
Q Consensus 40 ~~~~~~vt~~pg~gigpe~~~~~~~vfsa~ 69 (381)
|...+ |++|||||||||++.++++|+.+.
T Consensus 26 p~~~~-I~vIpGDGIGpEI~~aa~kVL~a~ 54 (474)
T PRK07362 26 PDNPI-IPFIRGDGTGVDIWPATQKVLDAA 54 (474)
T ss_pred CCCcE-EEEeCCCcccHHHHHHHHHHHHHH
Confidence 34334 999999999999999999999854
No 65
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=92.09 E-value=0.1 Score=52.01 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=45.7
Q ss_pred ccEEEcCCcchhHHHHhhhhhcCCcccccccccCCC--ccccccCCcCccccccCCCccChhHHHHHHHHHH
Q psy9726 288 FDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 357 (381)
Q Consensus 288 fdVivt~Nl~GDILSDlaa~l~GslGl~psanig~~--~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL 357 (381)
+|.+||- | -|++---.--+|+--|.|+.-+ +---.|-| |||.||||||+|||.+++-|..+.-
T Consensus 259 ~DavlaM--Y----HDQgliplK~l~Fd~~VNvtlGLPfiRTS~DH-GTAfDiAgkGiA~~~S~~~Ai~lA~ 323 (332)
T COG1995 259 YDAVLAM--Y----HDQGLIPLKYLGFDRGVNVTLGLPFIRTSVDH-GTAFDIAGKGIADPGSLIAAIKLAA 323 (332)
T ss_pred CCEEEEe--e----ccccchhhhhhccccceEEecCCCeeeecCCc-cchhhhhcCCcCCchHHHHHHHHHH
Confidence 4877763 3 4566555666777778887532 33446788 9999999999999999988876643
No 66
>KOG0786|consensus
Probab=90.28 E-value=0.064 Score=51.61 Aligned_cols=29 Identities=34% Similarity=0.644 Sum_probs=24.7
Q ss_pred CceEEEeeCCCCCCcceeeeccccccCCC
Q psy9726 42 GRTKCTLIPGDGVGPELVYSVQEHQSVPE 70 (381)
Q Consensus 42 ~~~~vt~~pg~gigpe~~~~~~~vfsa~~ 70 (381)
.++++|++||||||||+..-.+.+..+.+
T Consensus 3 ~~~~i~llpgd~ig~ev~s~a~~vlq~~~ 31 (363)
T KOG0786|consen 3 KRYNITLLPGDGIGPEVISVAKNVLQKAG 31 (363)
T ss_pred CcceEEEcCCCCcCHHHHHHHHHHHHHhc
Confidence 47899999999999999887777776665
No 67
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=88.80 E-value=5.5 Score=42.03 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=100.4
Q ss_pred eeecHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhC--CCeEEeEEe-HHHHHHHHHhCCCC
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY--PKIQFEQMI-VDNCTMQIVSNPHQ 287 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~ey--pdI~~~~~~-vD~~~~~lv~~P~~ 287 (381)
+......+.-.++.|.+.||..+---|.-.|.. +..|.-...-++..-+++ .+..+.-+- +.+|-..|-+=-.+
T Consensus 461 cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~---Rahd~~li~kV~~yLkdhdt~GldI~Ilsp~ea~~~sl~rl~~G 537 (744)
T COG2838 461 CQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY---RAHDKELIKKVEAYLKDHDTNGLDIQILSPVEAMRYSLERLRRG 537 (744)
T ss_pred HhcccchHHHHHHHHHHHHhhcCCceEEEeCcC---ccchHHHHHHHHHHhhhcCCCCcceEEecHHHHHHHHHHHHHcC
Confidence 444556677888999999988754334444322 212333333333333333 233444333 45665566555556
Q ss_pred cc-EEEcCCcchhHHHHhhhhhc-C-C---cccccccccCCCccccccCCcCcccccc----CCC--ccChhHHHHHHHH
Q psy9726 288 FD-VMVMPNLYGNIVDNLASGLV-G-G---AGVVAGASWSPECVVFEPGARHTYSEAV----GKN--VANPTAMLLCSTK 355 (381)
Q Consensus 288 fd-Vivt~Nl~GDILSDlaa~l~-G-s---lGl~psanig~~~a~FEp~H~GsApdia----Gk~--~ANP~a~Ils~am 355 (381)
-| +-||.|..-|+|+||.--+- | | +.+.|=-| +-+|||...-||||.-. .+| .=+-+|-+|+.+-
T Consensus 538 ~DtIsvTGNvLRDYlTDLFPIlELGTSAKMLSiVPlma---GGgmfETGAGGSAPKhVqQ~~eENhLRWDSLGEFLALa~ 614 (744)
T COG2838 538 EDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---GGGMFETGAGGSAPKHVQQLVEENHLRWDSLGEFLALAA 614 (744)
T ss_pred CceeEecchHHHHHHhhhhhHhhcccccchheeeeecc---CCceeecCCCCCCcHHHHHHHHhcccchhhHHHHHHHHH
Confidence 66 55899999999999986542 2 1 11112222 34899996548999743 344 5678999999999
Q ss_pred HHhhcCch-------HHHHHHHHHHHHHHHcC
Q psy9726 356 MLSHVNLQ-------YYGDMIRNAVNRVLKAG 380 (381)
Q Consensus 356 mL~hlg~~-------~~A~~i~~Av~~~l~~G 380 (381)
-|+|+|.. --|++|..|..+.|+..
T Consensus 615 sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~ 646 (744)
T COG2838 615 SLEHLGNKTGNAKAKVLAKALDAATGKLLDNN 646 (744)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 99998743 34667777777776543
No 68
>PRK08299 isocitrate dehydrogenase; Validated
Probab=82.46 E-value=0.9 Score=46.77 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=38.8
Q ss_pred eEEEeeCCCCCCcceeeeccccccCCCCceEEEEec-CCCc----hhHHHHHHHHHHHHc
Q psy9726 44 TKCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP-GDGV----GPELVYSVQEVFKAA 98 (381)
Q Consensus 44 ~~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip-GDGI----GpEV~~aa~~VL~a~ 98 (381)
..+++|||||||||++.++++++..+.-....-.++ |..- |.-+-+.+++.++..
T Consensus 8 ~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~ 67 (402)
T PRK08299 8 NPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKY 67 (402)
T ss_pred CceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHC
Confidence 478999999999999999999999998765554444 2210 223445666666653
No 69
>PRK12862 malic enzyme; Reviewed
Probab=71.04 E-value=29 Score=38.83 Aligned_cols=101 Identities=21% Similarity=0.254 Sum_probs=67.0
Q ss_pred eeecHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCcc---ccccHHHHHHHHHHHhhCCCeEEe-EEeHHHHHHHHHhC-
Q psy9726 211 KIVTAEKSRRIAKFAFDYATKNN-RKKVTAVHKANIM---KLGDGLFLNSCKEMAKLYPKIQFE-QMIVDNCTMQIVSN- 284 (381)
Q Consensus 211 ~~~Tr~~~eRiar~AFe~A~~r~-~k~Vt~v~KaNv~---~~tdglf~~~~~eva~eypdI~~~-~~~vD~~~~~lv~~- 284 (381)
.-.|.+...++++.+.++++.-| .-||-+.--+|.- ...-..-++.++.+.+++|++.++ .+-.|++...=++.
T Consensus 607 ~~pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiellr~~~~g~~VdGPl~aDtAf~~~~~~~ 686 (763)
T PRK12862 607 EDPTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEILRERAPDLEVDGEMHGDAALDEELRDR 686 (763)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHHHhcCCCcEEEcCCCHHHHcCHHHHhh
Confidence 34578888999999999998654 2356666222332 222234455566566788998776 44578886553332
Q ss_pred --C-----CCccEEEcCCcc-hhHHHHhhhhhcCC
Q psy9726 285 --P-----HQFDVMVMPNLY-GNIVDNLASGLVGG 311 (381)
Q Consensus 285 --P-----~~fdVivt~Nl~-GDILSDlaa~l~Gs 311 (381)
| +.+||+|++|+. |+|.--+..-+.|+
T Consensus 687 K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~gv 721 (763)
T PRK12862 687 IFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAGN 721 (763)
T ss_pred cCCCCccCCCCCEEEecChhHhhHHHHHHHHhccC
Confidence 2 459999999999 99988877766543
No 70
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=59.34 E-value=12 Score=38.86 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=19.9
Q ss_pred CccEEEeccCCCceeecccceee
Q psy9726 181 NVDCVIIREQTEGEYSALEHECV 203 (381)
Q Consensus 181 ~iDivIvREnteG~Y~g~e~~~~ 203 (381)
+.+++++||||||.|.+.++...
T Consensus 127 ~~~i~i~Ren~e~~y~~id~vi~ 149 (413)
T PTZ00435 127 KKPIVIGRHAFGDQYKATDFVVD 149 (413)
T ss_pred CCCeeeeccccCCCcCceEEEEe
Confidence 47899999999999999886554
No 71
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=59.26 E-value=7 Score=40.47 Aligned_cols=54 Identities=11% Similarity=0.040 Sum_probs=39.2
Q ss_pred EEEeeCCCCCCcceeeeccccccCCCCceEEEEec-CCC----chhHHHHHHHHHHHHc
Q psy9726 45 KCTLIPGDGVGPELVYSVQEHQSVPEGRTKCTLIP-GDG----VGPELVYSVQEVFKAA 98 (381)
Q Consensus 45 ~vt~~pg~gigpe~~~~~~~vfsa~~~~~~Iavip-GDG----IGpEV~~aa~~VL~a~ 98 (381)
.+++|||||||+|++.++++++..+.-....-.++ |.. .|.-+.+++++.++..
T Consensus 11 p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~ 69 (410)
T PLN00103 11 PIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKY 69 (410)
T ss_pred CeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHC
Confidence 57899999999999999999999888766555554 221 1334556676666654
No 72
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=57.79 E-value=78 Score=31.41 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHHHHHhCC--CCcEEEEE---cCCccccccHHHHHHHHHHHhhCCCeEEeE-EeHHHHHHHH------
Q psy9726 214 TAEKSRRIAKFAFDYATKNN--RKKVTAVH---KANIMKLGDGLFLNSCKEMAKLYPKIQFEQ-MIVDNCTMQI------ 281 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~--~k~Vt~v~---KaNv~~~tdglf~~~~~eva~eypdI~~~~-~~vD~~~~~l------ 281 (381)
|.+....|+..|-++|+.-+ .-||-++. |.|.--.+-..-++.++-+.+++|++.++= +.+|++.-.=
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~~~~~~~~~vdG~l~~D~Al~~~~a~~K~ 236 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIAKEKRPDLTIDGELQFDAAFVEKVAEKKA 236 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHHhccCCCeEEEecCchhhhCCHHHHHhhC
Confidence 55566678888899998654 33555543 223211122344555544445789987764 4467665331
Q ss_pred HhCC--CCccEEEcCCcc-hhHHHHhhhhhcCC
Q psy9726 282 VSNP--HQFDVMVMPNLY-GNIVDNLASGLVGG 311 (381)
Q Consensus 282 v~~P--~~fdVivt~Nl~-GDILSDlaa~l~Gs 311 (381)
..+| +.-||+|++|++ |+|+--+.-.+.|+
T Consensus 237 ~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 237 PNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred CCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 2222 578999999999 99988877766554
No 73
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=45.97 E-value=1.6e+02 Score=27.24 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEe-----HH---HHHHHHHhCCC
Q psy9726 215 AEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMI-----VD---NCTMQIVSNPH 286 (381)
Q Consensus 215 r~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~lv~~P~ 286 (381)
....+..+++..+.. +|.++|-++. .+....+.....+-+++..+++|++++.... .+ ..+.+++++..
T Consensus 105 ~~~g~~~~~~l~~~~--~g~~~i~~l~-~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (270)
T cd06308 105 YEIGRQAGEYIANLL--PGKGNILEIW-GLEGSSPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANP 181 (270)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEE-CCCCCchHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCC
Confidence 344444555554433 2556777774 1111122233445566666788877643321 12 34556665545
Q ss_pred CccEEEcCCc
Q psy9726 287 QFDVMVMPNL 296 (381)
Q Consensus 287 ~fdVivt~Nl 296 (381)
.+|.|++.|-
T Consensus 182 ~~~aI~~~~d 191 (270)
T cd06308 182 DIDLVYAHND 191 (270)
T ss_pred CCcEEEeCCc
Confidence 7998888653
No 74
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=44.33 E-value=73 Score=26.50 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=36.8
Q ss_pred eEEEEecCCCchhHHHH-HHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEec
Q psy9726 73 TKCTLIPGDGVGPELVY-SVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGV 137 (381)
Q Consensus 73 ~~IavipGDGIGpEV~~-aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~ 137 (381)
.+|.++.|-|+|-.++- ...+..+..+.+++.+-+..+... +...++|++|.||
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~-----------~~~~~~DviLl~P 58 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAG-----------EKGQNADVVLLGP 58 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhh-----------ccccCCCEEEECH
Confidence 48999999999999998 666666666766666543322211 1233578998877
No 75
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=42.59 E-value=2e+02 Score=32.36 Aligned_cols=98 Identities=23% Similarity=0.245 Sum_probs=64.4
Q ss_pred cHHHHHHHHHHHHHHHHhCC-CCcEEEE---EcCCccccccHHHHHHHHHHHhhCCCeEEeE-EeHHHHHHHHH------
Q psy9726 214 TAEKSRRIAKFAFDYATKNN-RKKVTAV---HKANIMKLGDGLFLNSCKEMAKLYPKIQFEQ-MIVDNCTMQIV------ 282 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~-~k~Vt~v---~KaNv~~~tdglf~~~~~eva~eypdI~~~~-~~vD~~~~~lv------ 282 (381)
|-+....|+..|-++|+.-| .-||-++ ++.|.--.+...-++..+-+.+++|++.++= +.+|++.-.-+
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~llk~~~~~l~~dGemq~D~Al~~~va~~K~p 681 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELLRERAPDLEVDGEMHGDAALNEEIRKDLYP 681 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHHHhhCCCcEEEEechHHHhCCHHHHHhhCC
Confidence 56666778888888998654 2367777 5555332222344555554556789887765 44676643222
Q ss_pred hCC--CCccEEEcCCcc-hhHHHHhhhhhcCC
Q psy9726 283 SNP--HQFDVMVMPNLY-GNIVDNLASGLVGG 311 (381)
Q Consensus 283 ~~P--~~fdVivt~Nl~-GDILSDlaa~l~Gs 311 (381)
.+| +.-||+|.||+- |+|+--+.-.+.|+
T Consensus 682 ~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~ 713 (752)
T PRK07232 682 FSRLKGPANVLVMPNLEAANISYNLLKELGGG 713 (752)
T ss_pred CCccCCcCCEEEeCCchhhHHHHHHHHHhcCC
Confidence 233 467899999998 99999988877665
No 76
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=42.15 E-value=73 Score=29.04 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=42.4
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHHHHHHHHhCCCCccEEEcCCcchhH--HH
Q psy9726 225 AFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNI--VD 302 (381)
Q Consensus 225 AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~~~~~lv~~P~~fdVivt~Nl~GDI--LS 302 (381)
++| |..||-++|++|+|..-. -...++-.+.+..+- .+++-..-+-....++......||+|...==|..- +.
T Consensus 57 GlE-ALSRGA~~v~fVE~~~~a---~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~ 131 (183)
T PF03602_consen 57 GLE-ALSRGAKSVVFVEKNRKA---IKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYE 131 (183)
T ss_dssp HHH-HHHTT-SEEEEEES-HHH---HHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHH
T ss_pred HHH-HHhcCCCeEEEEECCHHH---HHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHH
Confidence 566 667888999999987543 234555444443221 23444444444556667788999988775444322 24
Q ss_pred Hhhhhhc
Q psy9726 303 NLASGLV 309 (381)
Q Consensus 303 Dlaa~l~ 309 (381)
.+...+.
T Consensus 132 ~~l~~l~ 138 (183)
T PF03602_consen 132 ELLELLA 138 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 77
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=41.96 E-value=1.8e+02 Score=28.97 Aligned_cols=97 Identities=24% Similarity=0.242 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CcEEEE---EcCC-ccccccHHHHHHHHHHHhhCCCeEEeE-EeHHHHHHH-H-----
Q psy9726 214 TAEKSRRIAKFAFDYATKNNR-KKVTAV---HKAN-IMKLGDGLFLNSCKEMAKLYPKIQFEQ-MIVDNCTMQ-I----- 281 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~~-k~Vt~v---~KaN-v~~~tdglf~~~~~eva~eypdI~~~~-~~vD~~~~~-l----- 281 (381)
|.+....|+..|-++|+.-|. -||-++ +|.| -++. ...-++.++-+.+++|+..++= +.+|++.-. +
T Consensus 173 ~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~~-~~~~~ea~~ll~~~~~~~~vdGel~~D~A~~~~~~~~k~ 251 (324)
T PRK09653 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGPE-VDKVQEATEIAKELAPDLKIDGELQFDAAFVPEVAAKKA 251 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCc-HHHHHHHHHHHHhhCCCCeEEecchHHHhCCHHHHHhhC
Confidence 566677788888999986542 245444 2233 2332 2345555554556789988764 447877422 1
Q ss_pred HhCC--CCccEEEcCCcc-hhHHHHhhhhhcCC
Q psy9726 282 VSNP--HQFDVMVMPNLY-GNIVDNLASGLVGG 311 (381)
Q Consensus 282 v~~P--~~fdVivt~Nl~-GDILSDlaa~l~Gs 311 (381)
..+| +.-||+|.||+. |+|+--+.-.+.|+
T Consensus 252 ~~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~ 284 (324)
T PRK09653 252 PGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGF 284 (324)
T ss_pred CCCccCCcCCEEEcCChHHhHHHHHHHHHhcCC
Confidence 1222 467899999999 99988887776654
No 78
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.76 E-value=91 Score=25.35 Aligned_cols=55 Identities=15% Similarity=0.259 Sum_probs=35.5
Q ss_pred ceEEEEecCCCchhHHHH-HHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEec
Q psy9726 72 RTKCTLIPGDGVGPELVY-SVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGV 137 (381)
Q Consensus 72 ~~~IavipGDGIGpEV~~-aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~ 137 (381)
..+|.++-|.|++-.++. ...+.++.-+.+++++...++. .-+...++|++|.+|
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~-----------~~~~~~~~Dvill~p 58 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGA-----------AGEKLDDADVVLLAP 58 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHH-----------HHhhcCCCCEEEECc
Confidence 468999999999987643 3334444457776666544433 222345689998876
No 79
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=40.76 E-value=1e+02 Score=24.46 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHH-hh--CCCeEEeEEeHHHHHHHHHhCCCCccEEEcCC
Q psy9726 223 KFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA-KL--YPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPN 295 (381)
Q Consensus 223 r~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva-~e--ypdI~~~~~~vD~~~~~lv~~P~~fdVivt~N 295 (381)
+.++.+|+.+...+|+.++.+ .-+.+.+++-+ +. -+.|.+.+.-+ ......+++||+|++.+
T Consensus 14 ~~~~~l~~~~~~~~v~gvD~s-------~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 14 RLSIALARLFPGARVVGVDIS-------PEMLEIARERAAEEGLSDRITFVQGDA----EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEEeCC-------HHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcccCCCCCEEEECC
Confidence 346667774445779999853 33344444443 22 24566555333 45566788899999999
No 80
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=39.84 E-value=1.7e+02 Score=26.78 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=52.3
Q ss_pred EEEEecC-CCchhHHHHHHHHHHHHcCCCcceEEEe-c---cccc----CCCC------CChHHHHHHHHhcCcEEEecc
Q psy9726 74 KCTLIPG-DGVGPELVYSVQEVFKAANVPVDFEPFF-F---SEVN----PTMS------APLETVADSIARNGICLKGVL 138 (381)
Q Consensus 74 ~IavipG-DGIGpEV~~aa~~VL~a~~~~i~~~~~~-~---g~~~----~~~~------~~~~etl~~i~~~daiL~G~v 138 (381)
.|...|= +|---.+.+++++-++..|.+++...+. . +... +... +.+++.++.+.++|++++|
T Consensus 5 ~I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~g-- 82 (207)
T COG0655 5 GINGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFG-- 82 (207)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEe--
Confidence 3444444 7888899999999999988766665433 1 1111 1101 1256777889999999985
Q ss_pred cCCCCCCCcccchhhHHHHHhhcc
Q psy9726 139 STPDYSHTGELQTLNMKLRKALDL 162 (381)
Q Consensus 139 ~~p~~~~~~~~~s~~~~LR~~ldl 162 (381)
+|.+ +.....+|+.-+|-
T Consensus 83 -sPvy-----~g~vsa~~K~fiDR 100 (207)
T COG0655 83 -SPVY-----FGNVSAQMKAFIDR 100 (207)
T ss_pred -CCee-----cCCchHHHHHHHhh
Confidence 4653 23445678888884
No 81
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=39.28 E-value=3.1e+02 Score=25.16 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=34.7
Q ss_pred HHHHHHhCCCCcEEEEEcCCccccccHHHHH---------------HHHHHHhhCCCeEEeEE--eHHHH-HHHHHhCCC
Q psy9726 225 AFDYATKNNRKKVTAVHKANIMKLGDGLFLN---------------SCKEMAKLYPKIQFEQM--IVDNC-TMQIVSNPH 286 (381)
Q Consensus 225 AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~---------------~~~eva~eypdI~~~~~--~vD~~-~~~lv~~P~ 286 (381)
|-.+|+. |-+++|++|...+-. + -|-|+ ..+++.+-+|+++++.. .++.. ...++ .
T Consensus 37 a~~La~~-Gv~~i~lvD~d~ve~-s-NL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~---~ 110 (202)
T TIGR02356 37 ALYLAGA-GVGTIVIVDDDHVDL-S-NLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLI---N 110 (202)
T ss_pred HHHHHHc-CCCeEEEecCCEEcc-c-chhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHH---h
Confidence 4444544 678899999874432 1 23333 23344556788776644 34322 12233 4
Q ss_pred CccEEEcC
Q psy9726 287 QFDVMVMP 294 (381)
Q Consensus 287 ~fdVivt~ 294 (381)
.||+||..
T Consensus 111 ~~D~Vi~~ 118 (202)
T TIGR02356 111 NVDLVLDC 118 (202)
T ss_pred CCCEEEEC
Confidence 68977654
No 82
>PRK05805 phosphate butyryltransferase; Validated
Probab=38.64 E-value=3.2e+02 Score=26.93 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=64.2
Q ss_pred EeeeeeecHHHHHHHHHHHHHHHHhCCC--CcEEEE---EcCCccccccHHHHHHHHHHHh-----hCCCeEEe-EEeHH
Q psy9726 207 VECLKIVTAEKSRRIAKFAFDYATKNNR--KKVTAV---HKANIMKLGDGLFLNSCKEMAK-----LYPKIQFE-QMIVD 275 (381)
Q Consensus 207 a~~~~~~Tr~~~eRiar~AFe~A~~r~~--k~Vt~v---~KaNv~~~tdglf~~~~~eva~-----eypdI~~~-~~~vD 275 (381)
++...+ |-+....|++.|-+.|++-|. -||-+. +|.|-- ..-.++ +.++++ ++|+..+| ++.+|
T Consensus 143 ~vn~~P-~~~q~~~I~~~a~~~~~~lG~e~PkVA~LS~s~~~~~~---~~~t~~-a~~l~~~~~~~~~~~~~vdG~l~~D 217 (301)
T PRK05805 143 AFNIAP-DLKEKIDIINNAVTVAHAIGIENPKVAPICAVEVVNPK---MPATLD-AALLSKMSDRGQIKGCIVDGPLALD 217 (301)
T ss_pred EeccCc-CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCC---ChHHHH-HHHHHHHHhhCcCCCeEEEechHHH
Confidence 333333 556666788888899987654 244443 332211 112222 222322 46998775 44578
Q ss_pred HHHHH------HHhCC--CCccEEEcCCcc-hhHHHHhhhhhcCCcccccccccCCCc
Q psy9726 276 NCTMQ------IVSNP--HQFDVMVMPNLY-GNIVDNLASGLVGGAGVVAGASWSPEC 324 (381)
Q Consensus 276 ~~~~~------lv~~P--~~fdVivt~Nl~-GDILSDlaa~l~GslGl~psanig~~~ 324 (381)
++.-. -..+| +..||+|.||+. |+|+--+..-+.| .- +.+.-+|-..
T Consensus 218 ~A~~~~~a~~k~~~s~v~G~Anvli~Pnl~agNi~yK~l~~~~~-~~-~~gil~G~~~ 273 (301)
T PRK05805 218 NALSEEAAKHKGIDGPVAGNADILLVPNIEAGNVMYKTLTYFAD-CK-NGGLLVGTSA 273 (301)
T ss_pred HhcCHHHHHHhCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcC-Ce-EEeeeecCCC
Confidence 77622 22233 578999999988 9998887766644 22 3446666543
No 83
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=36.63 E-value=9.7 Score=38.96 Aligned_cols=117 Identities=18% Similarity=0.210 Sum_probs=66.6
Q ss_pred eEEEeeCCCCCCcceeeeccccc-----cCCCCceEEEE---ecCC----CchhHHHHHHHHHHHHcCCCcceE-EEecc
Q psy9726 44 TKCTLIPGDGVGPELVYSVQEHQ-----SVPEGRTKCTL---IPGD----GVGPELVYSVQEVFKAANVPVDFE-PFFFS 110 (381)
Q Consensus 44 ~~vt~~pg~gigpe~~~~~~~vf-----sa~~~~~~Iav---ipGD----GIGpEV~~aa~~VL~a~~~~i~~~-~~~~g 110 (381)
-.+..+.|||||||+..+..++. .+|++..+|.. ..|+ -.|.-+..+++.+++..++.|.-- .-++|
T Consensus 19 piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg 98 (407)
T COG0538 19 PIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVG 98 (407)
T ss_pred cccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCccc
Confidence 46778999999999999988776 56777777764 3443 356677788888888754333211 12243
Q ss_pred cccCCCCCChHHHHHHHHhcCcEEEeccc----CCCCCCCcc-cchhhHHHHHhh-cceeecE
Q psy9726 111 EVNPTMSAPLETVADSIARNGICLKGVLS----TPDYSHTGE-LQTLNMKLRKAL-DLYANVV 167 (381)
Q Consensus 111 ~~~~~~~~~~~etl~~i~~~daiL~G~v~----~p~~~~~~~-~~s~~~~LR~~l-dlyanvR 167 (381)
..-. .+.-|+..+...-+ ..=|+- .|+. .+. ++-+.+-.|... |+|+-++
T Consensus 99 ~g~r----SlNvtlRq~Ldly~-~~rPv~y~~gvPsp--vk~pe~~dmVIfRenteDiYagiE 154 (407)
T COG0538 99 KGWR----SLNVTLRQILDLYV-FRRPVRYFPGVPSP--VKRPEKVDMVIFRENTEDIYAGIE 154 (407)
T ss_pred cccc----CchHHHHHHcCceE-eeeeEEecCCCCCC--CCCcccCCeEEEeccccchhheee
Confidence 3211 24556555554333 334542 2321 112 223344455555 3777665
No 84
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.10 E-value=3.2e+02 Score=24.92 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEe----HHH---HHHHHHhCCCCc
Q psy9726 216 EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMI----VDN---CTMQIVSNPHQF 288 (381)
Q Consensus 216 ~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~----vD~---~~~~lv~~P~~f 288 (381)
.+....+++..+.. .|.+++.++.-. -.. +.....+-+++..+++|++++.... .+. .+..++.....+
T Consensus 105 ~~g~~~~~~l~~~~--~g~~~i~~i~~~-~~~-~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (267)
T cd06322 105 AGGVLAGELAAKVL--NGKGQVAIIDYP-TVQ-SVVDRVRGFKEALADYPNIKIVAVQPGITRAEALTAAQNILQANPDL 180 (267)
T ss_pred HHHHHHHHHHHHHh--CCCceEEEEecC-CCc-cHHHHHHHHHHHHHhCCCcEEEEecCCCChHHHHHHHHHHHHhCCCC
Confidence 33344444444332 245677777532 222 2234445666666777877653321 122 234556554478
Q ss_pred cEEEcCCcc
Q psy9726 289 DVMVMPNLY 297 (381)
Q Consensus 289 dVivt~Nl~ 297 (381)
++|++.|-.
T Consensus 181 ~ai~~~~d~ 189 (267)
T cd06322 181 DGIFAFGDD 189 (267)
T ss_pred CEEEEcCCc
Confidence 999998743
No 85
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=34.55 E-value=36 Score=34.55 Aligned_cols=18 Identities=33% Similarity=0.844 Sum_probs=10.8
Q ss_pred EEEEecCC--CchhHHHHHH
Q psy9726 74 KCTLIPGD--GVGPELVYSV 91 (381)
Q Consensus 74 ~IavipGD--GIGpEV~~aa 91 (381)
+|++--|| ||||||+-.+
T Consensus 11 ~IaIT~GDpaGIGPEii~ka 30 (345)
T PRK02746 11 RLAITLGDPAGIGPEVILKA 30 (345)
T ss_pred cEEEeCCCCcchHHHHHHHH
Confidence 56666665 5666665544
No 86
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=34.43 E-value=51 Score=27.13 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCC
Q psy9726 214 TAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYP 265 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eyp 265 (381)
-....|||.|.|.+-=+.. |..+|.-|+.+|++++++|-
T Consensus 22 e~keaERigr~AlKaGL~e-------------ieI~d~eL~~~FeeIa~RFr 60 (92)
T PF07820_consen 22 ETKEAERIGRIALKAGLGE-------------IEISDAELQAAFEEIAARFR 60 (92)
T ss_pred HHHHHHHHHHHHHHccccc-------------ccCCHHHHHHHHHHHHHHHh
Confidence 3566899999885533221 45678999999999998874
No 87
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=34.06 E-value=3.1e+02 Score=25.24 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCCcEEEEE-cCCccccccHHHHHHHHHHHhhCCCeEEeEEe-----H---HHHHHHHHhCCCCccEEEcCCc
Q psy9726 233 NRKKVTAVH-KANIMKLGDGLFLNSCKEMAKLYPKIQFEQMI-----V---DNCTMQIVSNPHQFDVMVMPNL 296 (381)
Q Consensus 233 ~~k~Vt~v~-KaNv~~~tdglf~~~~~eva~eypdI~~~~~~-----v---D~~~~~lv~~P~~fdVivt~Nl 296 (381)
+++++.++. ..+.. .+ ....+-+.+..+++|++++.... . -..+.++++++..+|.|++.|=
T Consensus 121 g~~~i~~l~~~~~~~-~~-~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 191 (275)
T cd06320 121 EGGKVAIIEGKAGAF-AA-EQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNND 191 (275)
T ss_pred CCceEEEEeCCCCCc-cH-HHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCc
Confidence 556777653 22322 11 23334556665666776543211 1 1244566766667899998863
No 88
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=33.98 E-value=23 Score=36.80 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.2
Q ss_pred CccEEEeccCCCceeeccccee
Q psy9726 181 NVDCVIIREQTEGEYSALEHEC 202 (381)
Q Consensus 181 ~iDivIvREnteG~Y~g~e~~~ 202 (381)
..+++|+||||||.|.+.+...
T Consensus 124 ~~~i~i~R~~~~~~y~~iD~vi 145 (409)
T TIGR00127 124 EKPIIIGRHAFGDQYRATDFVV 145 (409)
T ss_pred CCCeeeeccccCCCcCceEEEE
Confidence 3899999999999999987654
No 89
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=33.70 E-value=4.3e+02 Score=26.52 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHhCCCCcEEEEEcC-----CccccccHHHHH------------HHHHHHhhCCCeEEeEEeHHH---HHHHHHhC
Q psy9726 225 AFDYATKNNRKKVTAVHKA-----NIMKLGDGLFLN------------SCKEMAKLYPKIQFEQMIVDN---CTMQIVSN 284 (381)
Q Consensus 225 AFe~A~~r~~k~Vt~v~Ka-----Nv~~~tdglf~~------------~~~eva~eypdI~~~~~~vD~---~~~~lv~~ 284 (381)
|-.+|+. |-+++|++|.. |+-+. -||.+ ..+++.+-+|+++++....|. -...++
T Consensus 40 a~~La~a-Gvg~i~lvD~D~ve~sNL~RQ--~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~-- 114 (338)
T PRK12475 40 AEALVRA-GIGKLTIADRDYVEWSNLQRQ--QLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELV-- 114 (338)
T ss_pred HHHHHHc-CCCEEEEEcCCcccccccCcc--ccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHh--
Confidence 4445554 66789998875 44332 13321 123445567999887765432 223343
Q ss_pred CCCccEEEc--CCcchh-HHHHhh
Q psy9726 285 PHQFDVMVM--PNLYGN-IVDNLA 305 (381)
Q Consensus 285 P~~fdVivt--~Nl~GD-ILSDla 305 (381)
..+|+||. .|.--. +++|++
T Consensus 115 -~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 115 -KEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred -cCCCEEEEcCCCHHHHHHHHHHH
Confidence 46895543 343332 355555
No 90
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=33.56 E-value=34 Score=34.46 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=17.2
Q ss_pred ceEEEEecCC--CchhHHHHHHH
Q psy9726 72 RTKCTLIPGD--GVGPELVYSVQ 92 (381)
Q Consensus 72 ~~~IavipGD--GIGpEV~~aa~ 92 (381)
+.+|++--|| ||||||+-.++
T Consensus 5 ~p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 5 PLQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 3478999998 89999987774
No 91
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.38 E-value=1.3e+02 Score=24.35 Aligned_cols=54 Identities=15% Similarity=0.235 Sum_probs=38.6
Q ss_pred eEEEEecCCCchhHHH--HHHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEec
Q psy9726 73 TKCTLIPGDGVGPELV--YSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGV 137 (381)
Q Consensus 73 ~~IavipGDGIGpEV~--~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~ 137 (381)
++|.+..|-|+|-..+ ....++++.-|.+++.+..+++.. -..+.++|+++.++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~-----------~~~~~~~D~iv~t~ 58 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI-----------ETYMDGVHLICTTA 58 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH-----------hhhcCCCCEEEECC
Confidence 5799999999998888 455588888888888776555431 11234678887654
No 92
>PRK07742 phosphate butyryltransferase; Validated
Probab=33.18 E-value=4.7e+02 Score=25.69 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEEEcCCccccccHHHHHHHHHHH---h--hCCCeEEeE-EeHHHHHHHH----
Q psy9726 214 TAEKSRRIAKFAFDYATKNNR--KKVTAVHKANIMKLGDGLFLNSCKEMA---K--LYPKIQFEQ-MIVDNCTMQI---- 281 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~~--k~Vt~v~KaNv~~~tdglf~~~~~eva---~--eypdI~~~~-~~vD~~~~~l---- 281 (381)
|-+....|+..|-++|+.-|. -||-+..=.+.-......-++. .+++ + ++|+..+|= +..|++.-.=
T Consensus 148 ~~e~l~~ia~~a~~~a~~lGie~PkVAlLs~gee~~k~~~~~~eA-~~l~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~ 226 (299)
T PRK07742 148 DLEQKAAIIQNAVEVARAIGIDLPKVAPLAAVEVVNPAMQATIDA-AALTQMNRRGQIKNCVVDGPLALDNAVSQIAAEH 226 (299)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEecccCCCCCCHHHHHH-HHHHHHHhhCCCCCeEEeechHHHHhcCHHHHHH
Confidence 566667788888999986543 3455553222111122233332 2232 2 469988754 4467665331
Q ss_pred --HhCC--CCccEEEcCCcc-hhHHHHhhhhhcCCcccccccccCCCccccccCC
Q psy9726 282 --VSNP--HQFDVMVMPNLY-GNIVDNLASGLVGGAGVVAGASWSPECVVFEPGA 331 (381)
Q Consensus 282 --v~~P--~~fdVivt~Nl~-GDILSDlaa~l~GslGl~psanig~~~a~FEp~H 331 (381)
..+| +.-||+|.||+. |+|+--+...+.|+ . ..+.-+|. --|+|
T Consensus 227 k~~~s~v~G~Anvli~Pnl~agNi~~K~l~~~~~~-~-~g~il~G~----~~Pv~ 275 (299)
T PRK07742 227 KGIVSDVAGKADILLVPTIEAGNVLYKSLVYFADA-K-VGAMIAGA----KAPIV 275 (299)
T ss_pred hCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-c-Eeceeecc----CCCEE
Confidence 1233 467899999998 99988877776655 4 34444453 34555
No 93
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=33.07 E-value=36 Score=34.37 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=16.2
Q ss_pred eEEEEecCC--CchhHHHHHHH
Q psy9726 73 TKCTLIPGD--GVGPELVYSVQ 92 (381)
Q Consensus 73 ~~IavipGD--GIGpEV~~aa~ 92 (381)
.+|++--|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 478888898 89999987663
No 94
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.85 E-value=98 Score=25.08 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=33.2
Q ss_pred EEEEecCCCchhHHHHH-HHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEec
Q psy9726 74 KCTLIPGDGVGPELVYS-VQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGV 137 (381)
Q Consensus 74 ~IavipGDGIGpEV~~a-a~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~ 137 (381)
+|.++-|-|++..++.. ..+.++.-+.+++.+...++.. -+...++|++|.+|
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~Diil~~P 54 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESEL-----------EEYIDDADVVLLGP 54 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHH-----------HHhcCCCCEEEECh
Confidence 48899999999987633 2333444477766665554432 22345678888766
No 95
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.05 E-value=1.7e+02 Score=24.91 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=50.2
Q ss_pred EEEEecC----CCchhHHHHHHHHHHHHcCCCcceEEEecccccC---C-------CC-CChHHHHHHHHhcCcEEEecc
Q psy9726 74 KCTLIPG----DGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNP---T-------MS-APLETVADSIARNGICLKGVL 138 (381)
Q Consensus 74 ~IavipG----DGIGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~~---~-------~~-~~~~etl~~i~~~daiL~G~v 138 (381)
+|.+|-| +|....+++++.+.++..+ ++.+.+++..... + .. +.+++..+.++++|+++++.
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s- 78 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS- 78 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE-
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee-
Confidence 4555554 4788889999999998875 4444455544210 0 11 12578899999999999854
Q ss_pred cCCCCCCCcccchhhHHHHHhhcce
Q psy9726 139 STPDYSHTGELQTLNMKLRKALDLY 163 (381)
Q Consensus 139 ~~p~~~~~~~~~s~~~~LR~~ldly 163 (381)
|.+ +.+....|..-||..
T Consensus 79 --P~y-----~~~~s~~lK~~lD~~ 96 (152)
T PF03358_consen 79 --PVY-----NGSVSGQLKNFLDRL 96 (152)
T ss_dssp --EEB-----TTBE-HHHHHHHHTH
T ss_pred --cEE-----cCcCChhhhHHHHHh
Confidence 543 123445667777743
No 96
>PRK12861 malic enzyme; Reviewed
Probab=31.26 E-value=3.2e+02 Score=30.86 Aligned_cols=98 Identities=20% Similarity=0.191 Sum_probs=60.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCC-CcEEEEEcCCc---cccccHHHHHHHHHHHhhCCCeEEe-EEeHHHHHHHHH------
Q psy9726 214 TAEKSRRIAKFAFDYATKNNR-KKVTAVHKANI---MKLGDGLFLNSCKEMAKLYPKIQFE-QMIVDNCTMQIV------ 282 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~~-k~Vt~v~KaNv---~~~tdglf~~~~~eva~eypdI~~~-~~~vD~~~~~lv------ 282 (381)
|-+....|+..|.++|+.-|- -||-+..=+|. --.+....++..+-+.+++|++.++ ++..|++.-.-+
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~~~~~pd~~vdGemq~DaAl~~e~a~~K~p 690 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIVREQAPDLEADGEMHGDCALDEGLRARLLP 690 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHHHhhCCCcEEEecCcHHHhCCHHHHHhcCC
Confidence 445555667777888876542 34655542232 1112234555555445678998776 455786643322
Q ss_pred hCC--CCccEEEcCCc-chhHHHHhhhhhcCC
Q psy9726 283 SNP--HQFDVMVMPNL-YGNIVDNLASGLVGG 311 (381)
Q Consensus 283 ~~P--~~fdVivt~Nl-~GDILSDlaa~l~Gs 311 (381)
.+| +.-||+|+||+ =|+|+-.+.-.+.|+
T Consensus 691 ~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 691 MSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred CCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 122 57789999999 699999988887764
No 97
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=30.61 E-value=35 Score=34.05 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=14.2
Q ss_pred eEEEEecCC--CchhHHHHHH
Q psy9726 73 TKCTLIPGD--GVGPELVYSV 91 (381)
Q Consensus 73 ~~IavipGD--GIGpEV~~aa 91 (381)
.+|++--|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 367777777 7888887766
No 98
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=30.51 E-value=3.2e+02 Score=24.72 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeE-----EeHH---HHHHHHHhCCC
Q psy9726 215 AEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQ-----MIVD---NCTMQIVSNPH 286 (381)
Q Consensus 215 r~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~-----~~vD---~~~~~lv~~P~ 286 (381)
....+.++++..+... +.+++.++.=.+-.. +...+.+-+.+..++|+++++.. ...+ ..+.++.+.+.
T Consensus 104 ~~~~~~~~~~l~~~~~--g~~~i~~l~~~~~~~-~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (268)
T cd06323 104 VAGGKMAAEYLVKLLG--GKGKVVELQGIPGAS-AARERGKGFHEVVDKYPGLKVVASQPADFDRAKGLNVMENILQAHP 180 (268)
T ss_pred HHHHHHHHHHHHHHhC--CCceEEEEeCCCCCc-cHHHHHHHHHHHHHhCCCcEEEecccCCCCHHHHHHHHHHHHHHCC
Confidence 4445556665554431 456777764222121 22344455666666677665432 1112 23456666666
Q ss_pred CccEEEcCCc
Q psy9726 287 QFDVMVMPNL 296 (381)
Q Consensus 287 ~fdVivt~Nl 296 (381)
.+|.|+|.|-
T Consensus 181 ~~~ai~~~~d 190 (268)
T cd06323 181 DIKGVFAQND 190 (268)
T ss_pred CcCEEEEcCC
Confidence 7898888774
No 99
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=29.70 E-value=42 Score=33.90 Aligned_cols=20 Identities=45% Similarity=0.939 Sum_probs=16.6
Q ss_pred eEEEEecCC--CchhHHHHHHH
Q psy9726 73 TKCTLIPGD--GVGPELVYSVQ 92 (381)
Q Consensus 73 ~~IavipGD--GIGpEV~~aa~ 92 (381)
.+|++--|| ||||||+-.++
T Consensus 5 p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 5 PRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CcEEEeCCCCcccHHHHHHHHH
Confidence 478899998 89999987664
No 100
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.24 E-value=2e+02 Score=31.28 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=70.3
Q ss_pred eEeeeeeecHHHHHH-HHHHHHHHHHhC--CCC--------cEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEe-
Q psy9726 206 VVECLKIVTAEKSRR-IAKFAFDYATKN--NRK--------KVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMI- 273 (381)
Q Consensus 206 va~~~~~~Tr~~~eR-iar~AFe~A~~r--~~k--------~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~- 273 (381)
++..+.-.+-.|+|| +.|.|.+.|+.. ++| +|+++-.+=--+....+|.+..++ ..-|..+++.+-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 241 (578)
T PRK15490 164 LALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLE--EQVEVLEIAKITG 241 (578)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHh--cCCceEEeeccch
Confidence 555555666777764 778898888652 334 688888776666666788887776 233333333222
Q ss_pred --HHHH---------------------HHHH--HhCCCCccEEEcCCcchhHHHHhhhhhcCCcccc
Q psy9726 274 --VDNC---------------------TMQI--VSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVV 315 (381)
Q Consensus 274 --vD~~---------------------~~~l--v~~P~~fdVivt~Nl~GDILSDlaa~l~GslGl~ 315 (381)
.|.+ .+.| +-.-.++|||-|.|+...+++-++|-++|-.-+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv 308 (578)
T PRK15490 242 NLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQ 308 (578)
T ss_pred hhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEE
Confidence 2332 1111 2245788999999998889999999888765543
No 101
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=29.17 E-value=41 Score=33.88 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=16.1
Q ss_pred eEEEEecCC--CchhHHHHHHH
Q psy9726 73 TKCTLIPGD--GVGPELVYSVQ 92 (381)
Q Consensus 73 ~~IavipGD--GIGpEV~~aa~ 92 (381)
++|++--|| ||||||+-.++
T Consensus 3 ~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 3 KIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CcEEEeCCCCcchHHHHHHHHh
Confidence 468888888 89999986664
No 102
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=29.05 E-value=2.1e+02 Score=27.01 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeE-------EeHH---HHHHHHHhCCCCccEEE
Q psy9726 223 KFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQ-------MIVD---NCTMQIVSNPHQFDVMV 292 (381)
Q Consensus 223 r~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~-------~~vD---~~~~~lv~~P~~fdViv 292 (381)
+.|.++..++|.+++-++.-.+-.. +...+.+-|++..+++ +++++. .-.| .++.++++.+..+|.|+
T Consensus 141 ~~a~~~l~~~G~~~I~~l~~~~~~~-~~~~R~~Gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 218 (309)
T PRK11041 141 FEAVNYLHELGHKRIACIAGPEEMP-LCHYRLQGYVQALRRC-GITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVF 218 (309)
T ss_pred HHHHHHHHHcCCceEEEEeCCcccc-chHHHHHHHHHHHHHc-CCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEE
Confidence 3455555556777888775332222 2223444555554443 222111 1112 34456776666799999
Q ss_pred cCC
Q psy9726 293 MPN 295 (381)
Q Consensus 293 t~N 295 (381)
|.|
T Consensus 219 ~~~ 221 (309)
T PRK11041 219 CHS 221 (309)
T ss_pred EcC
Confidence 875
No 103
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=28.92 E-value=5.6e+02 Score=25.11 Aligned_cols=130 Identities=17% Similarity=0.098 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEEE---cCCc-cccccHHHHHHHHHHHhhCCCeEEeEEe-HHHHHHH------
Q psy9726 214 TAEKSRRIAKFAFDYATKNNR--KKVTAVH---KANI-MKLGDGLFLNSCKEMAKLYPKIQFEQMI-VDNCTMQ------ 280 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~~--k~Vt~v~---KaNv-~~~tdglf~~~~~eva~eypdI~~~~~~-vD~~~~~------ 280 (381)
|-+.-..|++.|-+.|++-|- -||-++. |.|- ++.| +=-+...++.++-|+..++-.+ +|++.-.
T Consensus 125 ~~eqk~~I~~nA~~~ar~lGie~PkVAlLS~se~~s~~~~st--~~a~~l~~~~~~~~~~~vdGpl~~D~Al~~e~a~~K 202 (271)
T TIGR02709 125 TQATLIEIVENAKEVAQKLGLHHPKIALLSAAENFNPKMPSS--VLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHK 202 (271)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCeEEEEecccCCCCCCchH--HHHHHHHHHHHhCCCCEEEecCchhhhcCHHHHHhh
Confidence 566677789999999987653 3454443 3332 1122 1122233344333887776443 6765422
Q ss_pred HHhCC--CCccEEEcCCcc-hhHHHHhhhhhcCCcccccccccCCCccccccCCcCccccccCCCccChhHHHHHHHHHH
Q psy9726 281 IVSNP--HQFDVMVMPNLY-GNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 357 (381)
Q Consensus 281 lv~~P--~~fdVivt~Nl~-GDILSDlaa~l~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ANP~a~Ils~ammL 357 (381)
-+.+| +.-||+|.||+. |+|+--+.-.+. +. -..+.-+|- --|+| =+.. -.++-.-+.|.++.+
T Consensus 203 ~~~s~vaG~AniLI~PnleaGNi~yK~l~~~~-~~-~~ggil~G~----~~PV~-~~SR------~~s~~~~~~siala~ 269 (271)
T TIGR02709 203 RYSGPIMGDADILVVPTIDVGNCLYKSLTLFG-HA-KVGGTIVGT----KVPVV-LTSR------SDSTESKFHSLRFAM 269 (271)
T ss_pred CCCCCCCCcCCEEEcCChHHHHHHHHHHHHhc-CC-eEEcccccC----CCCEE-ECCC------CCCHHHHHHHHHHHh
Confidence 22344 677999999998 999888776654 42 233334443 34655 2111 123344556666655
Q ss_pred h
Q psy9726 358 S 358 (381)
Q Consensus 358 ~ 358 (381)
+
T Consensus 270 ~ 270 (271)
T TIGR02709 270 R 270 (271)
T ss_pred c
Confidence 3
No 104
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=28.43 E-value=2.6e+02 Score=27.95 Aligned_cols=97 Identities=24% Similarity=0.272 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCcEEEEEcCCccccccH---HHHHHHHHHHhhCCCeEEe-EEeHHHHHHHHHh-----
Q psy9726 215 AEKSRRIAKFAFDYATKNN--RKKVTAVHKANIMKLGDG---LFLNSCKEMAKLYPKIQFE-QMIVDNCTMQIVS----- 283 (381)
Q Consensus 215 r~~~eRiar~AFe~A~~r~--~k~Vt~v~KaNv~~~tdg---lf~~~~~eva~eypdI~~~-~~~vD~~~~~lv~----- 283 (381)
.+....|+..|-+.|+.-| .-||-++.=+|--..... --++..+-+.+.+|+..+| ++.+|++.-.=+.
T Consensus 174 ~e~la~Ia~~aa~~~~~~g~~~PkvA~LS~s~~gs~~~~s~~~~~~a~~~~~~~~~~~~vdGe~q~D~Al~~~~~~~k~~ 253 (319)
T PF01515_consen 174 AEQLAEIAENAAETARRFGIEEPKVALLSYSEFGSPKGPSTDKVREAVEIAREKQPDLIVDGEMQFDAALSPEVAAKKYP 253 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSS-EEEEE-SSSTTSSTSHHHHHHHHHHHHHHHHCTTSEEEEEE-HHHHH-HHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCeEEEEeCccCCCCCCchHHHHHHHHHHHHhhCCCceecCccccchhcCHHHHHHhCC
Confidence 3444556677777887765 235666655544432111 1222332234678997776 5668887743322
Q ss_pred -CC--CCccEEEcCCcc-hhHHHHhhhhhcCC
Q psy9726 284 -NP--HQFDVMVMPNLY-GNIVDNLASGLVGG 311 (381)
Q Consensus 284 -~P--~~fdVivt~Nl~-GDILSDlaa~l~Gs 311 (381)
+| +.-||+|.||+. |+|+--+...+.|+
T Consensus 254 ~s~v~G~AnvLIfPnl~agNi~~K~l~~~~~~ 285 (319)
T PF01515_consen 254 FSPVAGDANVLIFPNLEAGNIAYKLLQRLGGA 285 (319)
T ss_dssp TSSTTTC-SEEE-SSHHHHHHHHHHHHHTTTE
T ss_pred CCccCCcCCEEEeCChhHhHHHHHHHHHhhCc
Confidence 22 578899999999 99999888877764
No 105
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=28.21 E-value=4.3e+02 Score=24.26 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=37.8
Q ss_pred HHHHHHHHHhC--CCCcEEEEEcC-CccccccHHHHHHHHHHHhhCCCeEEeEE-----eHH---HHHHHHHh-CCCCcc
Q psy9726 222 AKFAFDYATKN--NRKKVTAVHKA-NIMKLGDGLFLNSCKEMAKLYPKIQFEQM-----IVD---NCTMQIVS-NPHQFD 289 (381)
Q Consensus 222 ar~AFe~A~~r--~~k~Vt~v~Ka-Nv~~~tdglf~~~~~eva~eypdI~~~~~-----~vD---~~~~~lv~-~P~~fd 289 (381)
.+.|.++..++ +.+++-++.-. +.. ......+-+++..+++|+++.... ..+ .++.++++ +|..+|
T Consensus 110 g~~~~~~l~~~~~g~~~i~~i~~~~~~~--~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (273)
T cd06309 110 GRRAADWLAKATGGKGNIVELQGTVGSS--VAIDRKKGFAEVIKKYPNMKIVASQTGDFTRAKGKEVMEALLKAHGDDID 187 (273)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCCCCc--hHHHHHHHHHHHHHHCCCCEEeeccCCcccHHHHHHHHHHHHHhCCCCcc
Confidence 34444444443 56677777522 221 122344455555556765543221 112 23455664 565799
Q ss_pred EEEcCCcc
Q psy9726 290 VMVMPNLY 297 (381)
Q Consensus 290 Vivt~Nl~ 297 (381)
.|++.|-.
T Consensus 188 aI~~~~d~ 195 (273)
T cd06309 188 AVYAHNDE 195 (273)
T ss_pred EEEECCcH
Confidence 99998754
No 106
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=28.04 E-value=62 Score=32.63 Aligned_cols=11 Identities=0% Similarity=0.024 Sum_probs=7.0
Q ss_pred hcCcEEEeccc
Q psy9726 129 RNGICLKGVLS 139 (381)
Q Consensus 129 ~~daiL~G~v~ 139 (381)
+.|+++.+|+.
T Consensus 113 ~~~aivT~PI~ 123 (332)
T COG1995 113 EVDAIVTAPIN 123 (332)
T ss_pred cccEEEecccC
Confidence 46677777664
No 107
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=27.84 E-value=2.7e+02 Score=25.45 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEe-------EEeHH---HHHHHHHhCCCCccEEE
Q psy9726 223 KFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFE-------QMIVD---NCTMQIVSNPHQFDVMV 292 (381)
Q Consensus 223 r~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~-------~~~vD---~~~~~lv~~P~~fdViv 292 (381)
+.+.++..+.|.+++.++.-..- ......+.+-|.+..+++ ++.++ ....+ .++..+++....+|+|+
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~-~~~~~~R~~gf~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 182 (268)
T cd06270 105 YLATEHLIELGHRKIACITGPLT-KEDARLRLQGYRDALAEA-GIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVF 182 (268)
T ss_pred HHHHHHHHHCCCceEEEEeCCcc-cccHHHHHHHHHHHHHHc-CCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEE
Confidence 34444444556677777642211 112233444455544443 12111 11111 13345555555789999
Q ss_pred cCC
Q psy9726 293 MPN 295 (381)
Q Consensus 293 t~N 295 (381)
+.|
T Consensus 183 ~~~ 185 (268)
T cd06270 183 CAN 185 (268)
T ss_pred EcC
Confidence 998
No 108
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=27.67 E-value=2.5e+02 Score=26.88 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=40.7
Q ss_pred CceEEEEecCCCchh-HHHHHHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEec
Q psy9726 71 GRTKCTLIPGDGVGP-ELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGV 137 (381)
Q Consensus 71 ~~~~IavipGDGIGp-EV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~ 137 (381)
...+|++||=.+-.| +..+...+.++.+|+. +...+++.... ....++.++.++++|+++++-
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~-~v~~l~i~~r~---~a~~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVK-EVKILDVRERE---DASDENAIALLSNATGIFFTG 90 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCc-eeEEEecCChH---HccCHHHHHHHhhCCEEEEeC
Confidence 356999999655444 6677888888888863 22334442211 111356778899999999853
No 109
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=27.65 E-value=48 Score=33.55 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=16.2
Q ss_pred eEEEEecCC--CchhHHHHHHH
Q psy9726 73 TKCTLIPGD--GVGPELVYSVQ 92 (381)
Q Consensus 73 ~~IavipGD--GIGpEV~~aa~ 92 (381)
.+|++-.|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 4 RPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 378888898 89999987663
No 110
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.22 E-value=3.9e+02 Score=24.30 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCC---Ce-EEeEEe--HH---HHHHHHHhCCCCccEEE
Q psy9726 222 AKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYP---KI-QFEQMI--VD---NCTMQIVSNPHQFDVMV 292 (381)
Q Consensus 222 ar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eyp---dI-~~~~~~--vD---~~~~~lv~~P~~fdViv 292 (381)
.+.|.++..++|.++|.++.= +....+.....+-|++..+++. .. ...... .+ .+..++++....+|+|+
T Consensus 110 g~~~~~~l~~~g~~~i~~i~~-~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 188 (270)
T cd06294 110 GYDATEYLIKLGHKKIAFVGG-DLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIV 188 (270)
T ss_pred HHHHHHHHHHcCCccEEEecC-CcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEE
Confidence 344555555556678888752 2111122334455666555542 11 111111 11 23445666556899999
Q ss_pred cCC
Q psy9726 293 MPN 295 (381)
Q Consensus 293 t~N 295 (381)
|.|
T Consensus 189 ~~~ 191 (270)
T cd06294 189 ATD 191 (270)
T ss_pred ECC
Confidence 987
No 111
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=27.21 E-value=3e+02 Score=21.41 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCcccc--------ccHHHHHHHHHHHhh--CCCeEEeEEeHHHH-HHHHH-
Q psy9726 215 AEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKL--------GDGLFLNSCKEMAKL--YPKIQFEQMIVDNC-TMQIV- 282 (381)
Q Consensus 215 r~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~--------tdglf~~~~~eva~e--ypdI~~~~~~vD~~-~~~lv- 282 (381)
.....+++++|.+.|..+ ..++|++|=..-... ...-.++..++..+. ++++.+...+++.- ...|+
T Consensus 9 ~~~~~~~l~~a~~~a~~~-~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 87 (130)
T cd00293 9 SEESERALRWAARLARRL-GAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDPAEAILE 87 (130)
T ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHHHHH
Confidence 456788999999999986 467887763221110 112233444444332 46777666654321 22332
Q ss_pred -hCCCCccEEEcCC
Q psy9726 283 -SNPHQFDVMVMPN 295 (381)
Q Consensus 283 -~~P~~fdVivt~N 295 (381)
.+-.++|++|...
T Consensus 88 ~~~~~~~dlvvig~ 101 (130)
T cd00293 88 AAEELGADLIVMGS 101 (130)
T ss_pred HHHHcCCCEEEEcC
Confidence 3456788777754
No 112
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=25.43 E-value=6.5e+02 Score=24.65 Aligned_cols=111 Identities=13% Similarity=0.151 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--CcEEEEEcCCccccccHHHHHHHHHHH-----hhCCCeEEe-EEeHHHHHHH-----
Q psy9726 214 TAEKSRRIAKFAFDYATKNNR--KKVTAVHKANIMKLGDGLFLNSCKEMA-----KLYPKIQFE-QMIVDNCTMQ----- 280 (381)
Q Consensus 214 Tr~~~eRiar~AFe~A~~r~~--k~Vt~v~KaNv~~~tdglf~~~~~eva-----~eypdI~~~-~~~vD~~~~~----- 280 (381)
|.+....|+..|-+||+.-|. -||-+..=.+--......-++.++ +. .+|||..+| ++..|++.-.
T Consensus 145 ~~e~l~~ia~~a~~~ar~lGie~PrVAlLs~g~e~~kg~~~~~eA~~-L~~~~~~~~~~~~~vdG~l~~D~A~~~~~a~~ 223 (294)
T TIGR02706 145 ELKDKVQIINNAVKVAHAIGIDVPKVAPLAAVEVVNPKMPATVDAAA-LAKMSDRGQIKGCIVDGPLALDNAISEEAAKH 223 (294)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCcccCCCCChHHHHHHH-HHHHHhcCCCCCeEEEechHHHHhcCHHHHHH
Confidence 556667788888899986543 345555212111111123333322 32 245787775 3456877322
Q ss_pred -HHhCC--CCccEEEcCCcc-hhHHHHhhhhhcCCcccccccccCCCccccccCC
Q psy9726 281 -IVSNP--HQFDVMVMPNLY-GNIVDNLASGLVGGAGVVAGASWSPECVVFEPGA 331 (381)
Q Consensus 281 -lv~~P--~~fdVivt~Nl~-GDILSDlaa~l~GslGl~psanig~~~a~FEp~H 331 (381)
-..+| ++.||+|.||+. |+|+--+...+.|+ . ..+.-+| +--|+|
T Consensus 224 k~~~s~v~g~Anvli~P~l~agNi~~K~~~~~~~~-~-~g~il~G----~~~Pv~ 272 (294)
T TIGR02706 224 KGIEGEVAGKADILLVPDIEAGNVLYKTLTYFAKS-K-NGGILVG----TKAPVV 272 (294)
T ss_pred hCCCCCCCCcCCEEEeCChHHHHHHHHHHHHhcCC-c-Eeceeec----CCCCeE
Confidence 12232 577999999998 99988877666543 2 3333344 334555
No 113
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.10 E-value=4.3e+02 Score=24.12 Aligned_cols=77 Identities=12% Similarity=-0.011 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeH-------H---HHHHHHHhC
Q psy9726 215 AEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIV-------D---NCTMQIVSN 284 (381)
Q Consensus 215 r~~~eRiar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~v-------D---~~~~~lv~~ 284 (381)
....+..+++..+... ++++|-+++=.+. . +...-.+-+++..++||++.+...+. + ..+.++++.
T Consensus 103 ~~~g~~~~~~l~~~~~--g~~~i~~i~~~~~-~-~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 178 (273)
T cd06305 103 YSLARLSLDQLVKDLG--GKGNVGYVNVAGF-P-PLDRRYDVWQAVLKAYPGIKEVAELGDVSNNTAQDAAAQVEAVLKK 178 (273)
T ss_pred HHHHHHHHHHHHHHhC--CCCCEEEEEccCC-c-hHHHHHHHHHHHHHHCCCcEEecccccccccchhHHHHHHHHHHHH
Confidence 4445555666655443 4567776652211 1 11222234555556787554433221 1 234455544
Q ss_pred CCCc--cEEEcCC
Q psy9726 285 PHQF--DVMVMPN 295 (381)
Q Consensus 285 P~~f--dVivt~N 295 (381)
.... +.|++.|
T Consensus 179 ~~~~~~~ai~~~~ 191 (273)
T cd06305 179 YPKGGIDAIWAAW 191 (273)
T ss_pred CCCcccCeEEEcC
Confidence 4456 8888875
No 114
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=24.84 E-value=3.1e+02 Score=22.48 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEE-EcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHHH
Q psy9726 218 SRRIAKFAFDYATKNNRKKVTAV-HKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDN 276 (381)
Q Consensus 218 ~eRiar~AFe~A~~r~~k~Vt~v-~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD~ 276 (381)
..+-.+-.|.-+.+++ +.|.+. +..+-- .......++++++++|+.|++....+|.
T Consensus 7 ~~~~~~~~~~~~l~~~-~~vvv~f~a~wC~--~C~~~~~~l~~la~~~~~i~~~~vd~d~ 63 (113)
T cd02975 7 DRKALKEEFFKEMKNP-VDLVVFSSKEGCQ--YCEVTKQLLEELSELSDKLKLEIYDFDE 63 (113)
T ss_pred HHHHHHHHHHHHhCCC-eEEEEEeCCCCCC--ChHHHHHHHHHHHHhcCceEEEEEeCCc
Confidence 4445566566666653 334333 444332 2467778888998888888888877774
No 115
>KOG1014|consensus
Probab=24.67 E-value=1.3e+02 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEEeHH
Q psy9726 223 KFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVD 275 (381)
Q Consensus 223 r~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~~vD 275 (381)
.||+|+|+ ||- +|.++- | |..-..++.+|+.++|+ +++.-..+|
T Consensus 64 ayA~eLAk-rG~-nvvLIs-----R-t~~KL~~v~kEI~~~~~-vev~~i~~D 107 (312)
T KOG1014|consen 64 AYARELAK-RGF-NVVLIS-----R-TQEKLEAVAKEIEEKYK-VEVRIIAID 107 (312)
T ss_pred HHHHHHHH-cCC-EEEEEe-----C-CHHHHHHHHHHHHHHhC-cEEEEEEEe
Confidence 57999998 454 477763 4 45566778888988888 777777766
No 116
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.46 E-value=4.5e+02 Score=24.86 Aligned_cols=84 Identities=8% Similarity=0.037 Sum_probs=53.4
Q ss_pred CCceEEEEecCCC----chhHHHHHHHHHHHHcCCCcceEEEeccccc-CCCC--CCh--HHHHHHHHhcCcEEEecccC
Q psy9726 70 EGRTKCTLIPGDG----VGPELVYSVQEVFKAANVPVDFEPFFFSEVN-PTMS--APL--ETVADSIARNGICLKGVLST 140 (381)
Q Consensus 70 ~~~~~IavipGDG----IGpEV~~aa~~VL~a~~~~i~~~~~~~g~~~-~~~~--~~~--~etl~~i~~~daiL~G~v~~ 140 (381)
-+..+|.+|.|-- .+..+.+.+.+.+...+ ++++.+++..-. ++.. ..+ .+..+.++++|++++ .|
T Consensus 24 ~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g--~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii---~T 98 (219)
T TIGR02690 24 PHIPRILLLYGSLRERSYSRLLAEEAARLLGCEG--RETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVW---CS 98 (219)
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcC--CEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEE---eC
Confidence 3457899998854 66777777777777554 455555554211 2211 122 445678889999997 56
Q ss_pred CCCCCCcccchhhHHHHHhhcce
Q psy9726 141 PDYSHTGELQTLNMKLRKALDLY 163 (381)
Q Consensus 141 p~~~~~~~~~s~~~~LR~~ldly 163 (381)
|.+. .|.-..|.+.+|..
T Consensus 99 PEYn-----~sipg~LKNaiDwl 116 (219)
T TIGR02690 99 PERH-----GAITGSQKDQIDWI 116 (219)
T ss_pred Cccc-----cCcCHHHHHHHHhc
Confidence 7652 35567888899964
No 117
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=24.46 E-value=4.2e+02 Score=24.05 Aligned_cols=73 Identities=5% Similarity=0.032 Sum_probs=34.4
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhC-CCe-----EEeEEeHH---HHHHHHHhCCCCccEEE
Q psy9726 222 AKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY-PKI-----QFEQMIVD---NCTMQIVSNPHQFDVMV 292 (381)
Q Consensus 222 ar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~ey-pdI-----~~~~~~vD---~~~~~lv~~P~~fdViv 292 (381)
.+.|.++..++|.+++-++.-..-. .+.....+-|.+..+++ ..+ .......| ..+.+++.....+|+|+
T Consensus 106 g~~a~~~l~~~g~~~i~~i~~~~~~-~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 184 (270)
T cd01545 106 AREMTRHLIDLGHRRIAFIAGPPDH-RASAERLEGYRDALAEAGLPLDPELVAQGDFTFESGLEAAEALLALPDRPTAIF 184 (270)
T ss_pred HHHHHHHHHHCCCceEEEEeCCCCc-hhHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHhCCCCCCEEE
Confidence 3455565655677788887622211 11111112344443332 111 11111122 34456666545789999
Q ss_pred cCC
Q psy9726 293 MPN 295 (381)
Q Consensus 293 t~N 295 (381)
+.|
T Consensus 185 ~~~ 187 (270)
T cd01545 185 ASN 187 (270)
T ss_pred EcC
Confidence 876
No 118
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.69 E-value=2e+02 Score=27.48 Aligned_cols=70 Identities=10% Similarity=0.223 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCCc-EEEEEcC-CccccccHHHHHHHHHHHhhCCCeEEeEEeH-------H---HHHHHHHhCCCCccE
Q psy9726 223 KFAFDYATKNNRKK-VTAVHKA-NIMKLGDGLFLNSCKEMAKLYPKIQFEQMIV-------D---NCTMQIVSNPHQFDV 290 (381)
Q Consensus 223 r~AFe~A~~r~~k~-Vt~v~Ka-Nv~~~tdglf~~~~~eva~eypdI~~~~~~v-------D---~~~~~lv~~P~~fdV 290 (381)
+.|.+|-.++|.++ +.++.-. +.....+.+ +=+++..+++ ++.++..++ . .++.+|+.++..||.
T Consensus 107 ~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~--~Gy~~Al~~~-Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~ida 183 (279)
T PF00532_consen 107 YEATEYLIKKGHRRPIAFIGGPEDSSTSRERL--QGYRDALKEA-GLPIDEEWIFEGDFDYESGYEAARELLESHPDIDA 183 (279)
T ss_dssp HHHHHHHHHTTCCSTEEEEEESTTTHHHHHHH--HHHHHHHHHT-TSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SE
T ss_pred HHHHHHHHhcccCCeEEEEecCcchHHHHHHH--HHHHHHHHHc-CCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEE
Confidence 45666667777788 6555432 222111111 2233333444 222222221 1 456788888888999
Q ss_pred EEcCC
Q psy9726 291 MVMPN 295 (381)
Q Consensus 291 ivt~N 295 (381)
|+|.|
T Consensus 184 i~~~n 188 (279)
T PF00532_consen 184 IFCAN 188 (279)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 99988
No 119
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.65 E-value=4.8e+02 Score=24.31 Aligned_cols=73 Identities=10% Similarity=0.119 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEE-cCCccccccHHHHHHHHHHHhhC---CCeE-EeE-EeHH---HHHHHHHhCCCCccEE
Q psy9726 221 IAKFAFDYATKNNRKKVTAVH-KANIMKLGDGLFLNSCKEMAKLY---PKIQ-FEQ-MIVD---NCTMQIVSNPHQFDVM 291 (381)
Q Consensus 221 iar~AFe~A~~r~~k~Vt~v~-KaNv~~~tdglf~~~~~eva~ey---pdI~-~~~-~~vD---~~~~~lv~~P~~fdVi 291 (381)
.++.|.++-.++|.+++-++. ..+... . .-+.+-+++..+++ +.+. ... .-.+ .++.+++.....+|.|
T Consensus 105 ~~~~a~~~L~~~G~~~I~~i~~~~~~~~-~-~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 182 (269)
T cd06287 105 TARMLLEHLRAQGARQIALIVGSARRNS-Y-LEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDAL 182 (269)
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCccccc-H-HHHHHHHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCCCEE
Confidence 345566666666777777773 333221 1 12223344433333 1111 111 1112 2334555554578999
Q ss_pred EcCC
Q psy9726 292 VMPN 295 (381)
Q Consensus 292 vt~N 295 (381)
+|.|
T Consensus 183 ~~~~ 186 (269)
T cd06287 183 CVPV 186 (269)
T ss_pred EEcC
Confidence 9886
No 120
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.50 E-value=5.9e+02 Score=23.53 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEE-cCCccccccHHHHHHHHHHHhhCCCeEEeEEe-----HH---HHHHHHHhCC
Q psy9726 215 AEKSRRIAKFAFDYATKNNRKKVTAVH-KANIMKLGDGLFLNSCKEMAKLYPKIQFEQMI-----VD---NCTMQIVSNP 285 (381)
Q Consensus 215 r~~~eRiar~AFe~A~~r~~k~Vt~v~-KaNv~~~tdglf~~~~~eva~eypdI~~~~~~-----vD---~~~~~lv~~P 285 (381)
+.+.+..+++-.+.. .+.++|-++. ..+.. +.....+-|++..++++++++.... .+ ....++++..
T Consensus 106 ~~~g~~~~~~l~~~~--~g~~~i~~l~g~~~~~--~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (272)
T cd06313 106 YFMGASVAQALCNAM--GGKGKIAMLQGALGHT--GAQGRAQGFNDVIKKYPDIEVVDEQPANWDVSKAARIWETWLTKY 181 (272)
T ss_pred HHHHHHHHHHHHHHc--CCCceEEEEECCCCCc--chhHHHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHHHHHhC
Confidence 444454555544432 1455676664 22222 2234455566665667655432211 11 2334444433
Q ss_pred CCccEEEcCCc
Q psy9726 286 HQFDVMVMPNL 296 (381)
Q Consensus 286 ~~fdVivt~Nl 296 (381)
..+|+|+|.|=
T Consensus 182 ~~~~ai~~~nd 192 (272)
T cd06313 182 PQLDGAFCHND 192 (272)
T ss_pred CCCCEEEECCC
Confidence 35899999874
No 121
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=22.16 E-value=2.4e+02 Score=26.07 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHH-HHHHhhCCCeEEeEEeH--HHHHH----HHHhCCCCccEEEc
Q psy9726 252 LFLNSC-KEMAKLYPKIQFEQMIV--DNCTM----QIVSNPHQFDVMVM 293 (381)
Q Consensus 252 lf~~~~-~eva~eypdI~~~~~~v--D~~~~----~lv~~P~~fdVivt 293 (381)
-|.+.+ ++..+++|+|+++...+ ++... .+...-..+||+.+
T Consensus 9 ~~~~~~~~~f~k~~~~i~V~~~~~~~~~~~~~~~~~~~sg~~p~Dv~~~ 57 (315)
T PF01547_consen 9 ALQELIIEEFEKEHPGIKVEIEFIPWDDYQQKLNTALASGDAPYDVIFI 57 (315)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEETHHHHHHHHHHHHHTTGSSESEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCCccHHHHHHHHHHcCCChhheEEe
Confidence 566666 77777799999999887 44433 33333334499988
No 122
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=22.13 E-value=1.9e+02 Score=24.01 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=34.2
Q ss_pred eEEEEecCCCchhHHHHH-HHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEec
Q psy9726 73 TKCTLIPGDGVGPELVYS-VQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGV 137 (381)
Q Consensus 73 ~~IavipGDGIGpEV~~a-a~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~ 137 (381)
.+|.++.|.|++-.++.. ..++++.-|.+++.....++... + ......+|++|.||
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~--------~-~~~~~~~DvIll~P 58 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGE--------K-AIAAAEYDLYLVSP 58 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHH--------H-hhccCCCCEEEECh
Confidence 379999999998876544 34455556777776655544311 0 00112478888876
No 123
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=21.96 E-value=63 Score=32.45 Aligned_cols=19 Identities=32% Similarity=0.796 Sum_probs=14.3
Q ss_pred EEEEecCC--CchhHHHHHHH
Q psy9726 74 KCTLIPGD--GVGPELVYSVQ 92 (381)
Q Consensus 74 ~IavipGD--GIGpEV~~aa~ 92 (381)
+|++--|| ||||||+-.++
T Consensus 1 ~iaIT~GDp~GIGpEii~ka~ 21 (320)
T TIGR00557 1 RIAITLGDPAGIGPEIILKAL 21 (320)
T ss_pred CEEEecCCCcchHHHHHHHHH
Confidence 36677777 89999987664
No 124
>KOG1671|consensus
Probab=21.13 E-value=53 Score=30.83 Aligned_cols=36 Identities=19% Similarity=0.116 Sum_probs=29.9
Q ss_pred hhcCCcccccccccCCCccccccCCcCccccccCCCc
Q psy9726 307 GLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNV 343 (381)
Q Consensus 307 ~l~GslGl~psanig~~~a~FEp~H~GsApdiaGk~~ 343 (381)
++.=-||..|-+|-||.-+.|-|.| ||--|+.|+-.
T Consensus 151 gVCThLGCVp~~~AGd~gg~~CPCH-GSHYdasGRIr 186 (210)
T KOG1671|consen 151 GVCTHLGCVPIANAGDYGGYYCPCH-GSHYDASGRIR 186 (210)
T ss_pred eeeccccccccccccccCceecccc-cccccccCcee
Confidence 4444678899999999889999999 99999988543
No 125
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=20.94 E-value=3.6e+02 Score=26.98 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=55.2
Q ss_pred hHHHHHHHHhcCcEEEecccCCC---CCCCcccchhhHHHHHhhcceeecEEee---ecCC----------CCC------
Q psy9726 120 LETVADSIARNGICLKGVLSTPD---YSHTGELQTLNMKLRKALDLYANVVHVK---SLPG----------VKV------ 177 (381)
Q Consensus 120 ~~etl~~i~~~daiL~G~v~~p~---~~~~~~~~s~~~~LR~~ldlyanvRPv~---~~pg----------~~~------ 177 (381)
.++++++|+++|.+++||- +|. .+. -......-+||+.=---+.|-|+- .+.| ++.
T Consensus 174 ~p~vl~AI~~AD~IVlGPg-sp~TSI~P~-LlVpgI~eAL~~s~A~vV~Vspiig~~~v~Gpa~~~m~a~G~~~s~~gva 251 (303)
T cd07186 174 APEVLEAIEDADLVIIGPS-NPVTSIGPI-LALPGIREALRDKKAPVVAVSPIIGGKAVSGPAAKLMAALGFEPSAAGVA 251 (303)
T ss_pred CHHHHHHHHhCCEEEECCC-ccHHHhhhh-ccchhHHHHHHhCCCCEEEEcCCCCCCCCCchHHHHHHHcCCCCcHHHHH
Confidence 3899999999999999994 332 110 112233445665533334444441 1112 111
Q ss_pred -CCCC-ccEEEeccCCCceeecccceeeCCeEeeeeeecHHHHHHHHHHHH
Q psy9726 178 -RHSN-VDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAF 226 (381)
Q Consensus 178 -~~~~-iDivIvREnteG~Y~g~e~~~~~~va~~~~~~Tr~~~eRiar~AF 226 (381)
.|++ +|..|+-+--.+.=..++.....=.+.++..-+.+..+|++|.+.
T Consensus 252 ~~Y~~~~d~~vid~~D~~~~~~~~~~g~~v~~~~t~m~~~~~~~~la~~~l 302 (303)
T cd07186 252 EIYGDLLDGFVIDEADRALADAIEALGIEVSRTDTLMTDEEDKIRLAREVL 302 (303)
T ss_pred HHhhccccEEEEcccccccchhcccCCceeEecCccCCCHHHHHHHHHHHh
Confidence 2454 488777553332211111110111345666778888899998875
No 126
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=20.57 E-value=5.4e+02 Score=22.78 Aligned_cols=75 Identities=7% Similarity=0.001 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCccccccHHHHHHHHHHHhhCCCeEEeEE-----eHH---HHHHHHHhCCCCccEEE
Q psy9726 221 IAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQM-----IVD---NCTMQIVSNPHQFDVMV 292 (381)
Q Consensus 221 iar~AFe~A~~r~~k~Vt~v~KaNv~~~tdglf~~~~~eva~eypdI~~~~~-----~vD---~~~~~lv~~P~~fdViv 292 (381)
..+.+.+++.+.+.++|.+++-.+-... ...+.+-+++..+++++++.... -.+ ..+.+++..-...|+++
T Consensus 105 ~~~~~~~~l~~~g~~~i~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 183 (264)
T cd01537 105 AGYLAGEHLAEKGHRRIALLAGPLGSST-ARERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIF 183 (264)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCCCc-HHHHHHHHHHHHHHcCCcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 4455666666666778888865443222 23444455554444432221111 122 23345555433788888
Q ss_pred cCCc
Q psy9726 293 MPNL 296 (381)
Q Consensus 293 t~Nl 296 (381)
+.|-
T Consensus 184 ~~~~ 187 (264)
T cd01537 184 AAND 187 (264)
T ss_pred EcCc
Confidence 8864
No 127
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.29 E-value=4e+02 Score=20.40 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=33.9
Q ss_pred EEEEecCCCchhHHHH--HHHHHHHHcCCCcceEEEecccccCCCCCChHHHHHHHHhcCcEEEecc
Q psy9726 74 KCTLIPGDGVGPELVY--SVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVL 138 (381)
Q Consensus 74 ~IavipGDGIGpEV~~--aa~~VL~a~~~~i~~~~~~~g~~~~~~~~~~~etl~~i~~~daiL~G~v 138 (381)
+|.++.|-|+|--.+- ...+.++..+++++....... +.-+...++|++|.+|-
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~-----------~~~~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSIL-----------EVEEIADDADLILLTPQ 56 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETT-----------THHHHHTT-SEEEEEES
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEeccc-----------ccccccCCCcEEEEcCc
Confidence 6889999999988765 455677777744444433311 12233456899998774
No 128
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=20.03 E-value=56 Score=27.66 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=40.8
Q ss_pred ceEEEEecCCCch-hHHHHHHHHHHHHcCCCcceEEEecccccCCCCC--------C--hHHHHHHHHhcCcEEE
Q psy9726 72 RTKCTLIPGDGVG-PELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------P--LETVADSIARNGICLK 135 (381)
Q Consensus 72 ~~~IavipGDGIG-pEV~~aa~~VL~a~~~~i~~~~~~~g~~~~~~~~--------~--~~etl~~i~~~daiL~ 135 (381)
..+..+|-|.|+. .+..++..++.+..+.++ + +...+......+. . .+...+.++++|++|.
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv-~-~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~ 83 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPV-A-TTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLA 83 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEE-E-EEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCE-E-ecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEE
Confidence 4567888888865 567888889889888777 3 3334444333211 1 3677888899998875
Done!