RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9726
(381 letters)
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 461 bits (1188), Expect = e-163
Identities = 163/312 (52%), Positives = 212/312 (67%), Gaps = 5/312 (1%)
Query: 71 GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARN 130
GR TLIPGDGVG E+ SV+ +F+A N+P+D+E + + E V +S+ RN
Sbjct: 16 GRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQTDHK-EGVYEAV-ESLKRN 73
Query: 131 GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQ 190
I LKG+ TP + +LN+ LRK LD+YANV KSL GVK R ++D ++IRE
Sbjct: 74 KIGLKGLWHTP--ADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIREN 131
Query: 191 TEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGD 250
TEGE+S LEHE VPGVVE LK++T K+ RIA+FAFD+A K NRK VTAVHKANIMKLGD
Sbjct: 132 TEGEFSGLEHESVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGD 191
Query: 251 GLFLNSCKEMA-KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLV 309
GLF N E+ K YP I +IVDN +MQ V+ PHQFDV+V P++YG I+ N+ + L+
Sbjct: 192 GLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALI 251
Query: 310 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMI 369
GG G+VAGA++ + VFEPG+RH + G+NVANPTAM+L ST ML+H+ L Y I
Sbjct: 252 GGPGLVAGANFGRDYAVFEPGSRHVGLDIKGQNVANPTAMILSSTLMLNHLGLNEYATRI 311
Query: 370 RNAVNRVLKAGK 381
AV+ + GK
Sbjct: 312 SKAVHETIAEGK 323
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 458 bits (1180), Expect = e-162
Identities = 126/315 (40%), Positives = 191/315 (60%), Gaps = 8/315 (2%)
Query: 71 GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPL-ETVADSIAR 129
G+ + I GDG+GPE+ SV+++F AANVP+++E S + + + SI +
Sbjct: 20 GKYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITK 79
Query: 130 NGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIRE 189
N + LKG L+TP ++LN+ LRK L+ANV KS+ G K + NVD V+IRE
Sbjct: 80 NLVALKGPLATP---IGKGHRSLNLTLRKTFGLFANVRPAKSIEGFKTTYENVDLVLIRE 136
Query: 190 QTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLG 249
TEGEYS +EH PGVV+ +K++T + S R+ ++AF+YA R +V VHK+ I +L
Sbjct: 137 NTEGEYSGIEHIVCPGVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLA 196
Query: 250 DGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD--VMVMPNLYGNIVDNLASG 307
DGLF+N KE++K YP + E ++DN +++V+NP + V V PNLYG+I+ +L SG
Sbjct: 197 DGLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSG 256
Query: 308 L-VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYG 366
L G G+ A+ + +FE + + G++ ANPTA+LL S ML+H+ L +
Sbjct: 257 LSAGSLGLTPSANIGHKISIFEA-VHGSAPDIAGQDKANPTALLLSSVMMLNHMGLTNHA 315
Query: 367 DMIRNAVNRVLKAGK 381
D I+NAV + +G
Sbjct: 316 DQIQNAVLSTIASGP 330
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 454 bits (1169), Expect = e-158
Identities = 113/317 (35%), Positives = 174/317 (54%), Gaps = 9/317 (2%)
Query: 70 EGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEV---NPTMSAPLETVADS 126
+GR T+IPGDG+GPE V + +V +AA P+ +E S + +S
Sbjct: 17 DGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIES 76
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHS--NVDC 184
I + + LKG L TP ++ N+ LRK + YANV V+ P V ++ +D
Sbjct: 77 IRKTRVVLKGPLETP---VGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDL 133
Query: 185 VIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKAN 244
V++RE E Y+ +EH P V + LK+++ + S +I +FAF+ A RKKV K+N
Sbjct: 134 VVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSN 193
Query: 245 IMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNL 304
IMKL +G + +++A+ YP I+ +IVDN Q+V P QF+V+V N+ G+I+ +L
Sbjct: 194 IMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDL 253
Query: 305 ASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQY 364
SGL+GG G A+ E +FE + + GKNV NPTA+LL + ML ++
Sbjct: 254 TSGLIGGLGFAPSANIGNEVAIFEA-VHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFA 312
Query: 365 YGDMIRNAVNRVLKAGK 381
D+I NA+ L+ G+
Sbjct: 313 TADLIENALLYTLEEGR 329
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 404 bits (1040), Expect = e-141
Identities = 105/322 (32%), Positives = 161/322 (50%), Gaps = 26/322 (8%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFS-EVNPTMSAPL--ETVADS 126
LI GDG+GPE+V + + ++P+++ L +++
Sbjct: 3 TVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSL-KI 61
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVI 186
I + I LKG + + +KLR+ D+YAN+ KS+PG+ ++ NVD +I
Sbjct: 62 IDKADIILKGPVGESAAD-------VVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILI 114
Query: 187 IREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIM 246
+RE TE Y EH GV +KI+T S RIAK ++A RKKVT VHKAN+M
Sbjct: 115 VRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA-LRRRKKVTCVHKANVM 173
Query: 247 KLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 306
++ DGLF +C+ + K K+++ +M VD +V NP FDV+V N+YG+I+ + AS
Sbjct: 174 RITDGLFAEACRSVLK--GKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEAS 231
Query: 307 GLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYG 366
+ G G+ A+ + +FEP + GKN+ NPTA LL + M +
Sbjct: 232 QIAGSLGIAPSANIGDKKALFEP-VHGAAFDIAGKNIGNPTAFLLSVSMMYERMYELSND 290
Query: 367 D-------MIRNAVNRVLKAGK 381
D + NA+ V K K
Sbjct: 291 DRYIKASRALENAIYLVYKERK 312
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 387 bits (996), Expect = e-134
Identities = 110/313 (35%), Positives = 162/313 (51%), Gaps = 12/313 (3%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPF-----FFSEVNPTMSAPLETVADSIA 128
+ LI GDG+G E++ + + V +A +P++F F ++ P ETV + I
Sbjct: 3 RICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSV--PEETV-EKIL 59
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIR 188
L G ++P G LR+ LDLYANV KS P VD VI+R
Sbjct: 60 SCHATLFGAATSPTRKVPG-FFGAIRYLRRRLDLYANVRPAKSRPV-PGSRPGVDLVIVR 117
Query: 189 EQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKL 248
E TEG Y E V +++ + S RI + A A RK + HKAN++ L
Sbjct: 118 ENTEGLYVEQERR-YLDVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPL 176
Query: 249 GDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGL 308
GLFL++ KE+AK +P + + +IVDNC MQ+V P +FDV+V NL G+I+ +LA+GL
Sbjct: 177 TQGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGL 236
Query: 309 VGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDM 368
VGG G+ + VFEP + + GK +ANPTA +L + ML ++ +
Sbjct: 237 VGGLGLAPSGNIGDTTAVFEP-VHGSAPDIAGKGIANPTAAILSAAMMLDYLGEKEAAKR 295
Query: 369 IRNAVNRVLKAGK 381
+ AV+ VL+ G
Sbjct: 296 VEKAVDLVLERGP 308
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 346 bits (889), Expect = e-118
Identities = 105/342 (30%), Positives = 156/342 (45%), Gaps = 46/342 (13%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPF-----FFSEVNPTMSAPLETVA 124
LIP DG+G E+V + + + + + DF F + P TV
Sbjct: 12 VLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKAL--PERTV- 68
Query: 125 DSIARN-GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVD 183
+ + L G + +P + G + + LRK + LYANV VKSL G K + VD
Sbjct: 69 ERLKTECNAALFGAVQSPTHKVAGY-SSPIVALRKKMGLYANVRPVKSLDGAKGK--PVD 125
Query: 184 CVIIREQTEGEYSALEHECV----PGVVECLKIVTAEKSRRIAKFAFDYATKNN------ 233
VI+RE TE Y E V E ++ ++ E S +I K AF+ A
Sbjct: 126 LVIVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESG 185
Query: 234 ------RKKVTAVHKANIMKLGDGLFLNSCK---EMAKLYPKIQFEQMIVDNCTMQIVSN 284
+ VT +HK+N+M + DGLF SC+ + Y I ++ IVD+ ++
Sbjct: 186 TYSIHKKPLVTIIHKSNVMSVTDGLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFRE 245
Query: 285 PHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEP--GARHTYSEA---V 339
P FDV+V PNLYG+I+ + A+ L+G G+V A+ V+ EP G+ A
Sbjct: 246 PECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNFVMSEPVHGS------APDIA 299
Query: 340 GKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381
G+ +ANP A ML + Q I AV++VL GK
Sbjct: 300 GRGIANPVATFRSVALMLEFMGHQDAAADIYTAVDKVLTEGK 341
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 328 bits (842), Expect = e-110
Identities = 103/368 (27%), Positives = 163/368 (44%), Gaps = 61/368 (16%)
Query: 67 SVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFE--PFFFSEVNPTMSA------ 118
VP + I GDG+GPE+ + +V A + EV A
Sbjct: 20 IVPN-KPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVND 78
Query: 119 --PLETVADSIARNGICLKGVLSTPDYSHTGE-LQTLNMKLRKALDLYANVVHVKSLPGV 175
P ET + + + + LKG L TP G+ +++N+ +R LDLYAN+ VK + G+
Sbjct: 79 RFPKETQ-EMLLKYRVVLKGPLETP----IGKGWKSVNVAIRLMLDLYANIRPVKYIEGL 133
Query: 176 KVRHS---NVDCVIIREQTEGEYSALEHEC--------------------VPGVVECLKI 212
+ VD +I RE T+ Y +E+ +K+
Sbjct: 134 ESPLKHPEKVDMIIFRENTDDLYRGIEYPFNSEEAKKIRDFLRKELKVEIEDDTGIGIKV 193
Query: 213 VTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAK---------- 262
++ K++RI + A YA ++ RKKVT +HK N+MK +G F E+A
Sbjct: 194 MSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEYRDFIVTE 253
Query: 263 --------LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGV 314
KI I DN QI+ P ++D+++ PN+ G+ + + A L+G G+
Sbjct: 254 EEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNIGM 313
Query: 315 VAGASWSPECVVFEPGARH-TYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAV 373
+ GA+ E +FE A H T + GKNVANPT ++ ML + D+I A+
Sbjct: 314 LGGANIGDEGGMFE--AIHGTAPKYAGKNVANPTGIIKAGELMLRWMGWNEAADLIEKAI 371
Query: 374 NRVLKAGK 381
N ++ K
Sbjct: 372 NMAIRDKK 379
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 326 bits (839), Expect = e-110
Identities = 105/361 (29%), Positives = 163/361 (45%), Gaps = 64/361 (17%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVADSI 127
GDG+G ++V + V AA + E + +V A P +T+ ++I
Sbjct: 31 PYFEGDGIGKDVVPAAIRVLDAAADKIGKE-VVWFQVYAGEDAYKLYGNYLPDDTL-NAI 88
Query: 128 ARNGICLKGVLSTPDYSHTGE-LQTLNMKLRKALDLYANVVHVKSLPGVKV---RHSNVD 183
+ LKG L+TP G ++LN+ +R+ LDLYANV V L GV V+
Sbjct: 89 KEFRVALKGPLTTP----VGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVN 144
Query: 184 CVIIREQTEGEYSALEHEC--------------------VPGVVECLKIVTAEKSRRIAK 223
VI RE TE Y+ +E +K ++ ++R+ +
Sbjct: 145 FVIFRENTEDVYAGIEWPRGSEEALKLIRFLKNEFGVTIREDSGIGIKPISEFATKRLVR 204
Query: 224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY------------------- 264
A YA +NNRK VT VHK NIMK +G F + E+AK
Sbjct: 205 MAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQ 264
Query: 265 --PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSP 322
KI + I DN QI++ ++DV+ +PNL G+ + + A+ L+GG G+ G++
Sbjct: 265 PEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIGD 324
Query: 323 ECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380
VFEP G+ Y+ G+N NPTA +L M ++ + +MI+ AV + +G
Sbjct: 325 GIGVFEPVHGSAPKYA---GQNKVNPTAEILTGALMFEYIGWKDASEMIKKAVEMTISSG 381
Query: 381 K 381
Sbjct: 382 I 382
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 326 bits (837), Expect = e-109
Identities = 93/376 (24%), Positives = 157/376 (41%), Gaps = 70/376 (18%)
Query: 67 SVPEGRTKCTLIPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFF-----FSEVNP 114
+V + + I GDG G ++ + +V AA + + + P
Sbjct: 32 NVSD-QPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGP 90
Query: 115 TMSAPLETVADSIARNGICLKGVLSTPDYSHTGE-LQTLNMKLRKALDLYANVVHVKSLP 173
+ P ET+ + + +KG L+TP G +++LN+ LR+ LDLY + ++
Sbjct: 91 DVWLPEETL-QVLKEYVVSIKGPLTTP----VGGGIRSLNVALRQELDLYVCLRPIQYFK 145
Query: 174 GVKV---RHSNVDCVIIREQTEGEYSALEHECVPGVVE---------------------- 208
GV + VI RE +E Y+ +E +
Sbjct: 146 GVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQAKKVIKFLQEEMGVKKIRFPQTSG 205
Query: 209 -CLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA------ 261
+K V+ E + R+ + A YA N+RK VT VHK NIMK +G F ++ +A
Sbjct: 206 IGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGYALAQKEFGA 265
Query: 262 --------------KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASG 307
K +I + I D QI+ P ++DV+ NL G+ + + +
Sbjct: 266 ELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAA 325
Query: 308 LVGGAGVVAGASWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYY 365
VGG G+ GA+ S +FE G Y+ GK+ NP + +L + ML H+
Sbjct: 326 QVGGIGIAPGANLSDSVAMFEATHGTAPKYA---GKDYVNPGSEILSAEMMLRHLGWTEA 382
Query: 366 GDMIRNAVNRVLKAGK 381
D+I +A+ + +K +
Sbjct: 383 ADVIISAMEKSIKQKR 398
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 320 bits (822), Expect = e-107
Identities = 104/372 (27%), Positives = 161/372 (43%), Gaps = 66/372 (17%)
Query: 67 SVPEGRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFE--PFFFSEVNPTMSA------ 118
VP+ I GDGVGPE+V S +V AA V + E+ A
Sbjct: 31 RVPD-NPVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGE 89
Query: 119 --PLETVADSIARNGICLKGVLSTPDYSHTGE-LQTLNMKLRKALDLYANVVHVKSL--P 173
P T+ + I + LKG L TP G ++LN+ +R+ALDLYAN+ V+ P
Sbjct: 90 LLPKATL-EGIRLARVALKGPLETP----VGTGYRSLNVAIRQALDLYANIRPVRYYGQP 144
Query: 174 GVKVRHSNVDCVIIREQTEGEYSALEHEC--------------------VPGVVECLKIV 213
VD VI RE TE Y+ +E +K +
Sbjct: 145 APHKYADRVDMVIFRENTEDVYAGIEWPHDSPEAARIRRFLAEEFGISIREDAGIGVKPI 204
Query: 214 TAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY--------- 264
+ +RR+ + A ++A +N VT +HK NIMK +G F+ E+A
Sbjct: 205 SRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKFREHVVTEQ 264
Query: 265 ------------PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGA 312
KI I DN QI++ P + V+V PNL G+ + + AS LVGG
Sbjct: 265 EVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGI 324
Query: 313 GVVAGASWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLS-HVNLQYYGDMI 369
G+ AG + V EP G Y+ GK++ NP+A +L ++ ++ + + ++
Sbjct: 325 GMAAGMNMGDGIAVAEPVHGTAPKYA---GKDLINPSAEILSASLLIGEFMGWREVKSIV 381
Query: 370 RNAVNRVLKAGK 381
A+ + +++ K
Sbjct: 382 EYAIRKAVQSKK 393
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 303 bits (778), Expect = e-100
Identities = 97/379 (25%), Positives = 164/379 (43%), Gaps = 80/379 (21%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFF-----FSEVNPTMSAPLETV 123
I GDG GP++ + +V +AA + ++ + +++ + P ET+
Sbjct: 23 PFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWL--PAETL 80
Query: 124 ADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK---VRHS 180
D I I +KG L+TP G +++LN+ LR+ LDL+ + V+ GV R
Sbjct: 81 -DVIREYFIAIKGPLTTPV--GGG-IRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPE 136
Query: 181 NVDCVIIREQTEGEYSALEHECVPGVVECL-----------------------KIVTAEK 217
+ D VI RE TE Y+ +E+ V+ L K V+ E
Sbjct: 137 DTDMVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEG 196
Query: 218 SRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY------------- 264
+ R+ + A DYA ++ RK VT VHK NIMK +G F N E+A+
Sbjct: 197 TSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDR 256
Query: 265 --------------------PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNL 304
KI + I D QI++ P++FDV+ NL G+ + +
Sbjct: 257 IAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDA 316
Query: 305 ASGLVGGAGVVAGASWSPEC--VVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNL 362
+ VGG G+ GA+ + E +FE T + G + NP++++L +L H+
Sbjct: 317 LAAQVGGIGIAPGANINYETGHAIFEA-THGTAPKYAGLDKVNPSSVILSGVLLLEHLGW 375
Query: 363 QYYGDMIRNAVNRVLKAGK 381
D++ ++ + + +
Sbjct: 376 NEAADLVIKSMEKTIASKV 394
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 290 bits (744), Expect = 2e-95
Identities = 92/379 (24%), Positives = 148/379 (39%), Gaps = 80/379 (21%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS--EVNPTMSA----------PLETV 123
I GDG+G ++ +++ V AA V + E+ A P ET+
Sbjct: 30 PFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETM 89
Query: 124 ADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK---VRHS 180
+I + +KG L TP G +++LN+ +R+ LDLY + V+ G
Sbjct: 90 -AAIREYKVAIKGPLETPV--GGG-IRSLNVAMRQDLDLYVCLRPVRYFEGTPSPMRHPE 145
Query: 181 NVDCVIIREQTEGEYSALEHECV-----------------------PGVVECLKIVTAEK 217
VD VI RE +E Y+ +E +K V+ E
Sbjct: 146 KVDMVIFRENSEDIYAGIEWPAGSPEAEKIIRFLREEMGVTKIRFPDSSAIGIKPVSTEG 205
Query: 218 SRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMA---------------- 261
S R+ + YA ++ + V+ VHK NIMK +G F + +A
Sbjct: 206 SERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAA 265
Query: 262 -----------------KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNL 304
K+ + +I DN QI+ P + V+ NL G+ V +
Sbjct: 266 ISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDA 325
Query: 305 ASGLVGGAGVVAGASWSPECVVFEP--GARHTYSEAVGKNVANPTAMLLCSTKMLSHVNL 362
+ VGG G+ GA+ S +FE G G+ ANP++++L + ML H+
Sbjct: 326 LAAEVGGIGMAPGANLSDTHAIFEATHGTAPDI---AGQGKANPSSLILSAVMMLEHLGW 382
Query: 363 QYYGDMIRNAVNRVLKAGK 381
I A+N + AG+
Sbjct: 383 GEAAQAIVAAMNATIAAGE 401
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 232 bits (594), Expect = 1e-73
Identities = 101/346 (29%), Positives = 156/346 (45%), Gaps = 52/346 (15%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPF------FFSEVNPTMSAPLETV 123
+ IPGDG+G E++ V +AA + ++F+ F ++ + M P +
Sbjct: 7 RIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMM--PDDWA 64
Query: 124 -----ADSIARNGICLKGVLSTPDYSHTGE-LQTLNMKLRKALDLYANVVHVKSLPGVK- 176
D+I G + PD L +K R+ D Y N+ V+ PGV
Sbjct: 65 EQLKQYDAI------YFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPC 118
Query: 177 ----VRHSNVDCVIIREQTEGEYSALEHECVPG----VVECLKIVTAEKSRRIAKFAFDY 228
+ ++D V++RE TEGEYS+L +V I T RI K+AFD
Sbjct: 119 ALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDL 178
Query: 229 ATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQF 288
A K RK VT+ K+N M + + + MA YP + +++ +D + V P +F
Sbjct: 179 AEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERF 238
Query: 289 DVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECV---VFEP--GARHTYSEA---VG 340
DV+V NL+G+I+ +L G G+ A+ +PE +FEP G+ A G
Sbjct: 239 DVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGS------APDIFG 292
Query: 341 KNVANPTAMLLCSTKMLSHV-----NLQYYGDMIRNAVNRVLKAGK 381
KN+ANP AM+ ML + Q D + NA+ RV+ G
Sbjct: 293 KNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGS 338
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 204 bits (522), Expect = 3e-63
Identities = 92/338 (27%), Positives = 148/338 (43%), Gaps = 52/338 (15%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFS-----EVNPTMSAPLETV----- 123
K +I GDG+GPE+ +V A V + + P V
Sbjct: 3 KLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVL--PDSVVAELRN 60
Query: 124 ADSIARNGICLKGVLSTPDY-SHTGELQTLNMKLRKALDLYANVVHVKSLPGVK---VRH 179
D+I L G + P S E L ++LR LD + N+ + PGV +
Sbjct: 61 HDAI------LLGAIGDPSVPSGVLERGLL-LRLRFELDHHINLRPARLYPGVASPLSGN 113
Query: 180 SNVDCVIIREQTEGEYSALEHECVPGVVECLK---------IVTAEKSRRIAKFAFDYAT 230
+D V++RE TEG Y+ G + + TA RR+ AF+ A
Sbjct: 114 PGIDFVVVREGTEGPYTG-----NGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERAR 168
Query: 231 KNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDV 290
+ RK +T VHK N++ GL+L + E+ + YP ++ VD T+ ++++P +FDV
Sbjct: 169 RR-RKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDV 227
Query: 291 MVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVV---FEP--GARHTYSEA---VGKN 342
+V NL+G+I+ +LA+ + GG G+ A + FEP G+ A G+
Sbjct: 228 IVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGS------APDIAGQG 281
Query: 343 VANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380
+A+PTA ++ +LSH+ + AV L
Sbjct: 282 IADPTAAIMSVALLLSHLGEHDAAARVDRAVEAHLATR 319
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI,
protein structure initiative, joint center for structu
genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Length = 366
Score = 171 bits (435), Expect = 5e-50
Identities = 95/330 (28%), Positives = 150/330 (45%), Gaps = 31/330 (9%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
K ++PGDG+GPE+V +V + F + A P ET
Sbjct: 14 KIAVLPGDGIGPEVVREALKVLEVVEKKTGKT-FEKVFGHIGGDAIDRFGEPLPEETKKI 72
Query: 126 SIARNGICLKGVLSTPDYSHTG-----ELQTLNMKLRKALDLYANVVHVKSLPGVK---- 176
+ + I G + P + E+ L + LRK L+LYAN+ +K +
Sbjct: 73 CLEADAI-FLGSVGGPKWDDLPPEKRPEIGGL-LALRKMLNLYANIRPIKVYRSLVHVSP 130
Query: 177 ----VRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKN 232
V S VD V +RE + G Y I + RIA+ AF+ A
Sbjct: 131 LKEKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEIAKNR 190
Query: 233 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMV 292
RKKVT+V KAN++ L+ E+A+ YP ++ + VDN MQ++ P QFDV++
Sbjct: 191 -RKKVTSVDKANVLYSSM-LWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVIL 248
Query: 293 MPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARH-TYSEAVGKNVANPTAMLL 351
N++G+I+ + ++ L G G++ AS+ + ++EP + + GKN+ANP A +L
Sbjct: 249 TTNMFGDILSDESAALPGSLGLLPSASFG-DKNLYEPA--GGSAPDIAGKNIANPIAQIL 305
Query: 352 CSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
ML H + I AV V++ G
Sbjct: 306 SLAMMLEHSFGMVEEARKIERAVELVIEEG 335
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 169 bits (431), Expect = 2e-49
Identities = 86/334 (25%), Positives = 143/334 (42%), Gaps = 38/334 (11%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
K ++ GDG+GP ++ ++ +F F +E ++ ET+
Sbjct: 8 KVAVLAGDGIGPLVMKEALKILTFIAQKYNFS-FELNEAKIGGASIDAYGVALSDETLKL 66
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVK- 176
+ I L G + P + + L + LRK +L+AN+ K +
Sbjct: 67 CEQSDAI-LFGSVGGPKWDNLPIDQRPERASL----LPLRKHFNLFANLRPCKIYESLTH 121
Query: 177 -------VRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYA 229
+ VD + +RE T G Y + + E RIA+ AF+ A
Sbjct: 122 ASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEIYTKKE-IERIARIAFESA 180
Query: 230 TKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 289
+KKV + KAN++ L+ +AK Y I E M VDN MQIV NP FD
Sbjct: 181 RIR-KKKVHLIDKANVLASSI-LWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFD 238
Query: 290 VMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECV-VFEPGARH-TYSEAVGKNVANPT 347
VM+ NL+G+I+ + + + G G+++ AS + + ++EP + + N+ANP
Sbjct: 239 VMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEPA--GGSAPDIAHLNIANPI 296
Query: 348 AMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
A +L + ML + + I NA++ L G
Sbjct: 297 AQILSAALMLKYSFKEEQAAQDIENAISLALAQG 330
Score = 29.4 bits (67), Expect = 2.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 45 KCTLIPGDGVGPELV 59
K ++ GDG+GP ++
Sbjct: 8 KVAVLAGDGIGPLVM 22
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 168 bits (427), Expect = 6e-49
Identities = 89/340 (26%), Positives = 154/340 (45%), Gaps = 45/340 (13%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
++PGDG+GPE++ +V A D S + A P TV
Sbjct: 6 HIAVLPGDGIGPEVMAQALKVMDAVRSRFDMR-ITTSHYDVGGIAIDNHGHPLPKATVEG 64
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVK- 176
+ I L G + P + + G L + LRK L++N+ K G++
Sbjct: 65 CEQADAI-LFGSVGGPKWENLPPESQPERGAL----LPLRKHFKLFSNLRPAKLYQGLEA 119
Query: 177 -------VRHSNVDCVIIREQTEGEY------SALEHECVPGVVECLKIVTAEKSRRIAK 223
+ + D + +RE T G Y + + + RIA+
Sbjct: 120 FCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTE--VYHRFEIERIAR 177
Query: 224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVS 283
AF+ A K R+KVT++ KAN+++ L+ ++AK YP ++ M +DN TMQ++
Sbjct: 178 IAFESARKR-RRKVTSIDKANVLQSSI-LWREIVNDVAKTYPDVELAHMYIDNATMQLIK 235
Query: 284 NPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECV-VFEPGARH-TYSEAVGK 341
+P QFDV++ NL+G+I+ + + + G G++ AS + + ++EP + + GK
Sbjct: 236 DPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPA--GGSAPDIAGK 293
Query: 342 NVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
N+ANP A +L +L + ++ I A+NR L+ G
Sbjct: 294 NIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEG 333
Score = 29.1 bits (66), Expect = 2.3
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 45 KCTLIPGDGVGPELV 59
++PGDG+GPE++
Sbjct: 6 HIAVLPGDGIGPEVM 20
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 168 bits (427), Expect = 6e-49
Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 40/336 (11%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
K + GDG+GPE+V + ++V A + +E +A P ++
Sbjct: 3 KIAIFAGDGIGPEIVAAARQVLDAVDQAAHLG-LRCTEGLVGGAALDASDDPLPAASLQL 61
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
++A + + + G + P + G L +LRK LDLYAN+ + P +
Sbjct: 62 AMAADAV-ILGAVGGPRWDAYPPAKRPEQGLL-----RLRKGLDLYANLRPAQIFPQLLD 115
Query: 178 -------RHSNVDCVIIREQTEGEY----SALEHECVPGVVECLKIVTAEKSRRIAKFAF 226
+VD +++RE T Y LE + ++ RRIA AF
Sbjct: 116 ASPLRPELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAF 175
Query: 227 DYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPH 286
A RK++ +V KAN+++ L+ E+A+ YP ++ M VDN MQ++ P
Sbjct: 176 RAAQGR-RKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPA 233
Query: 287 QFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARH-TYSEAVGKNVAN 345
QFDV++ N++G+I+ + AS L G G++ AS ++EP H + + G++ AN
Sbjct: 234 QFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEPI--HGSAPDIAGQDKAN 291
Query: 346 PTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
P A +L ML H +N + + + AV RVL G
Sbjct: 292 PLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQG 327
Score = 29.4 bits (67), Expect = 2.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 45 KCTLIPGDGVGPELV 59
K + GDG+GPE+V
Sbjct: 3 KIAIFAGDGIGPEIV 17
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase; HET: IPM; 1.48A {Shewanella benthica}
PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A*
3vl3_A*
Length = 375
Score = 167 bits (426), Expect = 1e-48
Identities = 96/340 (28%), Positives = 161/340 (47%), Gaps = 45/340 (13%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
+ ++ GDG+GPE++ ++V A D +SE + +A P T+
Sbjct: 15 QIAVLAGDGIGPEVMAEARKVLAAVEKRFDLS-IEYSEYDVGGAAIDNHGCPLPEATLKG 73
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVK- 176
A + + L G + P + H G L + LR +L+ N+ K PG++
Sbjct: 74 CEAADAV-LFGSVGGPKWEHLPPNDQPERGAL----LPLRGHFELFCNMRPAKLHPGLEH 128
Query: 177 -------VRHSNVDCVIIREQTEGEY------SALEHECVPGVVECLKIVTAEKSRRIAK 223
+ D + +RE T G Y E E + ++ RRIAK
Sbjct: 129 MSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQGEGENEEAFDTM--RYSRKEIRRIAK 186
Query: 224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVS 283
AF+ A RKKVT+V KAN++ L+ +E+AK YP ++ E + +DN TMQ++
Sbjct: 187 IAFESAQGR-RKKVTSVDKANVLACSV-LWREVVEEVAKDYPDVELEHIYIDNATMQLLR 244
Query: 284 NPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECV-VFEPGARH-TYSEAVGK 341
P++FDVM+ NL+G+IV + + L G G++A S + + ++EP + + G+
Sbjct: 245 RPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQGFGMYEPA--GGSAPDIAGQ 302
Query: 342 NVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+ANP A +L + +L H + L+ I AV++ L G
Sbjct: 303 GIANPVAQILSAALLLRHSLKLEDAALAIEAAVSKALSDG 342
Score = 29.5 bits (67), Expect = 2.2
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 45 KCTLIPGDGVGPELV 59
+ ++ GDG+GPE++
Sbjct: 15 QIAVLAGDGIGPEVM 29
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 166 bits (423), Expect = 4e-48
Identities = 109/338 (32%), Positives = 163/338 (48%), Gaps = 44/338 (13%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
K ++PGDG+GPE++ + EV KA E F F +A P ET+
Sbjct: 25 KIAVLPGDGIGPEVMEAAIEVLKAVAERFGHE-FEFEYGLIGGAAIDEAGTPLPEETLDV 83
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
+ I L G + P + G L +RK LDL+AN+ VK +
Sbjct: 84 CRGSDAI-LLGAVGGPKWDQNPSELRPEKGLL-----GIRKGLDLFANLRPVKVYDSLAD 137
Query: 178 -------RHSNVDCVIIREQTEGEY-----SALEHECVPGVVECLKIVTAEKSRRIAKFA 225
VD VI+RE T G Y E V + T E+ RI + A
Sbjct: 138 ASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEGEEAAVDTL--LYTREEIERIIRKA 195
Query: 226 FDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNP 285
F+ A +KKVT+V KAN+++ L+ +E+AK YP ++ E M+VDN MQ++ NP
Sbjct: 196 FELALT-RKKKVTSVDKANVLESSR-LWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNP 253
Query: 286 HQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECV-VFEPGARH-TYSEAVGKNV 343
QFDV+V N++G+I+ + AS + G G++ AS S + + ++EP H + + GK +
Sbjct: 254 RQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPV--HGSAPDIAGKGI 311
Query: 344 ANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
ANP A +L + ML + L+ I AV +VL G
Sbjct: 312 ANPLATILSAAMMLRYSFGLEEEAKAIEKAVEKVLAEG 349
Score = 29.5 bits (67), Expect = 2.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 45 KCTLIPGDGVGPELV 59
K ++PGDG+GPE++
Sbjct: 25 KIAVLPGDGIGPEVM 39
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 165 bits (421), Expect = 4e-48
Identities = 95/337 (28%), Positives = 152/337 (45%), Gaps = 44/337 (13%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
K ++PGDG+GPE+ + +V +A + + +A P T
Sbjct: 5 KVAVLPGDGIGPEVTEAALKVLRALDEAEGLG-LAYEVFPFGGAAIDAFGEPFPEPTRKG 63
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
+ L G + P + TG L LRK+ DL+AN+ K PG++
Sbjct: 64 VEEAEAV-LLGSVGGPKWDGLPRKIRPETGLL-----SLRKSQDLFANLRPAKVFPGLER 117
Query: 178 -------RHSNVDCVIIREQTEGEY----SALEHECVPGVVECLKIVTAEKSRRIAKFAF 226
VD +I+RE T G Y + + + R+A+ AF
Sbjct: 118 LSPLKEEIARGVDVLIVRELTGGIYFGEPRGMSEAE--AWNTE--RYSKPEVERVARVAF 173
Query: 227 DYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPH 286
+ A K RK V +V KAN++++G+ + + +E+ + YP + E VD M +V +P
Sbjct: 174 EAARKR-RKHVVSVDKANVLEVGE-FWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPA 231
Query: 287 QFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARH-TYSEAVGKNVAN 345
+FDV+V N++G+I+ +LAS L G G++ AS VFEP H + + GK +AN
Sbjct: 232 RFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPV--HGSAPDIAGKGIAN 289
Query: 346 PTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
PTA +L + ML H L + +AV + L
Sbjct: 290 PTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETP 326
Score = 29.0 bits (66), Expect = 2.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 45 KCTLIPGDGVGPELV 59
K ++PGDG+GPE+
Sbjct: 5 KVAVLPGDGIGPEVT 19
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate
and isopropylmalate dehydrogenases family, biosynthesis;
2.25A {Arabidopsis thaliana}
Length = 405
Score = 165 bits (420), Expect = 2e-47
Identities = 96/340 (28%), Positives = 157/340 (46%), Gaps = 46/340 (13%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
TL+PGDG+GPE+V + V + A E F F E+ +A P ET++
Sbjct: 44 TITLLPGDGIGPEVVSIAKNVLQQAGSLEGVE-FNFREMPIGGAALDLVGVPLPEETISA 102
Query: 126 SIARNGICLKGVLSTPDYSH--------TGELQTLNMKLRKALDLYANVVHVKSLPGVKV 177
+ + + L G + + + G L ++R AL ++AN+ LP +
Sbjct: 103 AKESDAV-LLGAIGGYKWDNNEKHLRPEKGLL-----QIRAALKVFANLRPATVLPQLVD 156
Query: 178 -------RHSNVDCVIIREQTEGEY-------SALEHECVPGVVECLKIVTAEKSRRIAK 223
VD +++RE T G Y E+ G + A + RIA+
Sbjct: 157 ASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTE--VYAAHEIDRIAR 214
Query: 224 FAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVS 283
AF+ A K R K+ +V KAN+++ L+ +A YP ++ M VDN MQ+V
Sbjct: 215 VAFETARKR-RGKLCSVDKANVLEASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVR 272
Query: 284 NPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECV-VFEPGARH-TYSEAVGK 341
+P QFD +V N++G+I+ + AS + G G++ AS S +FEP H + + G+
Sbjct: 273 DPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPI--HGSAPDIAGQ 330
Query: 342 NVANPTAMLLCSTKMLSH-VNLQYYGDMIRNAVNRVLKAG 380
+ ANP A +L + +L + + + I +AV L G
Sbjct: 331 DKANPLATILSAAMLLKYGLGEEKAAKRIEDAVLVALNNG 370
Score = 29.1 bits (66), Expect = 2.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 45 KCTLIPGDGVGPELV 59
TL+PGDG+GPE+V
Sbjct: 44 TITLLPGDGIGPEVV 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 61/395 (15%), Positives = 111/395 (28%), Gaps = 128/395 (32%)
Query: 71 GRTKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLE----TVADS 126
G + L+ V P + + + E F PT + T A+
Sbjct: 14 GSLEHVLL----V-PTASFFIASQLQ--------EQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALD------LYANVVH--VKSLPG---- 174
+ + L V S + S G+ + L L L N +H L
Sbjct: 61 VGK---FLGYVSSLVEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 175 -VKVRHSNVDC------VIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFA-- 225
+ + + R + SAL + V ++ +A F
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSAL-----------FRAVGEGNAQLVAIFGGQ 163
Query: 226 ------FD-----YAT-KNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPK-IQFEQM 272
F+ Y T + + +L + + + K++ + + +
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL-----IRTTLDAEKVFTQGLNILEW 218
Query: 273 I-----------VDNCTMQIVSNP----HQF-DVMVMPNLYG----NIVDNLASGLVGGA 312
+ + + +S P Q +V L G + L
Sbjct: 219 LENPSNTPDKDYLLSIP---ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 313 GVVAGA------SW------SPECV--VFEPGAR--HTY------SEAVGKNVAN----P 346
G+V SW + + +F G R Y + ++ N P
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 347 TAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381
+ ML S L+ +Q D + N L AGK
Sbjct: 336 SPMLSISN--LTQEQVQ---DYVN-KTNSHLPAGK 364
Score = 47.7 bits (113), Expect = 5e-06
Identities = 47/254 (18%), Positives = 82/254 (32%), Gaps = 82/254 (32%)
Query: 82 GVGPELVY----SVQEVFKAANVPVD---FEPFFFS--EV---NPT-------------- 115
G+G +L Y + Q+V+ A D + + FS ++ NP
Sbjct: 1630 GMGMDL-YKTSKAAQDVWNRA----DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 116 ----MSAPLETVADSIARNGICLKGV-LSTPDYSHTGELQTLNMKLRK------ALDL-- 162
+ ET+ D + K + + Y+ E L+ AL L
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS----ATQFTQPALTLME 1740
Query: 163 YANVVHVKS---LPGVKVR--HSNVDCVIIREQTEGEYSALEHECVPGVV---ECLKIVT 214
A +KS +P HS + GEY+AL + V+ +++V
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHS----L-------GEYAAL--ASLADVMSIESLVEVV- 1786
Query: 215 AEKSR-RIAKFAF--DYATKNNRKKVTAVHKANI-MKLGDGLFLNSCKEMAKLYPKIQFE 270
R + A D ++N + A++ + + + K + E
Sbjct: 1787 --FYRGMTMQVAVPRDELGRSNY-GMIAINPGRVAASFSQEALQYVVERVGKRTGWL-VE 1842
Query: 271 QMIV-DNC-TMQIV 282
IV N Q V
Sbjct: 1843 --IVNYNVENQQYV 1854
Score = 41.2 bits (96), Expect = 5e-04
Identities = 68/360 (18%), Positives = 112/360 (31%), Gaps = 103/360 (28%)
Query: 11 DQILRQS-KNYGQNIVK-NSIHSTAV---IHQSVPEGRTK-----------CTLIPGDGV 54
DQ+L + ++ N IH+ A +TK P D
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 55 GPELVYSVQEHQSVPEGRTKCTLIPGDGVG------PELVYSVQEVFKAANVPVDFEPF- 107
++ ++V EG + I G G G EL +++++ +
Sbjct: 141 SNSALF-----RAVGEGNAQLVAIFG-GQGNTDDYFEEL----RDLYQ------TYHVLV 184
Query: 108 --FFSEVNPTMSAPLETVAD--SIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLY 163
T+S + T D + G+ + L P +T + L L
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS--NTPDKDYL---------LS 233
Query: 164 ANVVHVKSLPGVKVR---HSNVDCVIIREQTEGEYSALEHECVPGVVECLK-IVTAEKSR 219
+ S P + V H V ++ T GE + G + +VTA
Sbjct: 234 IPI----SCPLIGVIQLAHYVVTAKLL-GFTPGEL----RSYLKGATGHSQGLVTA---- 280
Query: 220 RIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFL--NSCKEMAKLYPKIQFEQMIVDNC 277
A T + +V KA + + LF C E YP I+++
Sbjct: 281 --VAIA---ETDSWESFFVSVRKA--ITV---LFFIGVRCYE---AYPNTSLPPSILEDS 327
Query: 278 T---------MQIVSNPHQFDV---MVMPNLYGNIVDNLASGLVGGAG--VVAGASWSPE 323
M +SN Q V + N + + LV GA VV+G P+
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG---PPQ 384
Score = 39.6 bits (92), Expect = 0.002
Identities = 44/261 (16%), Positives = 82/261 (31%), Gaps = 114/261 (43%)
Query: 10 CDQILRQSKNYG---QNIVKN-----SIHST------------AVIHQSVPEGRTKCTLI 49
D + YG +IV N +IH A+I +++ +G+ K I
Sbjct: 1649 ADNHFKD--TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 50 PGDGVGPELVYSVQEHQSVPEG---RTKCT-------------------LIPGD----G- 82
+ + +G T+ T LIP D G
Sbjct: 1707 FKE-INEHSTSYTFRS---EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 83 -VGPELVYS--------------VQEVFK-----AANVPVD---FEPFFFSEVNP-TMSA 118
+G E Y+ V+ VF VP D + +NP ++A
Sbjct: 1763 SLG-E--YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 119 P-----LETVADSIAR--NGIC------LKG---VLSTPDYSHTGELQTLNMKLRKALDL 162
L+ V + + + + ++ V + G+L +ALD
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA-------GDL--------RALDT 1864
Query: 163 YANV---VHVKSLPGVKVRHS 180
NV + ++ + ++++ S
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKS 1885
Score = 37.3 bits (86), Expect = 0.010
Identities = 61/353 (17%), Positives = 100/353 (28%), Gaps = 132/353 (37%)
Query: 79 PGD---------GVGPELVYSVQEVFKAANVPVDFEPF-----------FF-----SEVN 113
PG+ G LV +V + +E F FF E
Sbjct: 260 PGELRSYLKGATGHSQGLVTAV--AIAETD---SWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 114 PTMSAPLETVADSIARNGICLKGV----LSTPDYSHTGELQT----LNMKLRKALDLYA- 164
P S P + DS+ N +GV LS + + ++Q N L +
Sbjct: 315 PNTSLPPSILEDSLE-NN---EGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEIS 369
Query: 165 --N-----VV--HVKSLPGVKVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTA 215
N VV +SL G+ + +Q+ +P
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR----------IPF---------- 409
Query: 216 EKSRRIAKFAFDYATKNNRKKVTA-VHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIV 274
S R KF+ + V + H L + + + +
Sbjct: 410 --SERKLKFSNRFLP------VASPFHSH---------LLVPASD--LINKDLVKNNVSF 450
Query: 275 DNCTMQIVSNP--HQFDVMVMPNLYGNIVDNLASGLVGG-----AGVVAGASWSPECVVF 327
+ +QI P FD + L G+I + + ++ A+ + F
Sbjct: 451 NAKDIQI---PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH---ILDF 504
Query: 328 EPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLKAG 380
PG + +G L+H N G V RV+ AG
Sbjct: 505 GPGG----ASGLGV---------------LTHRNKDGTG------V-RVIVAG 531
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
thermostable, oxidoreductase; 2.24A {Thermotoga
maritima}
Length = 399
Score = 45.5 bits (107), Expect = 2e-05
Identities = 57/308 (18%), Positives = 108/308 (35%), Gaps = 53/308 (17%)
Query: 124 ADSIARNGICLKGVLSTPDYSHTGEL------QTLNMKLRKALD--LYANVVHVKSLPGV 175
A +I + G+ +K TPD E ++ N +R LD ++ + VK++P +
Sbjct: 61 AKAIKKYGVGVKCATITPDAERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPL 120
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRI-------------- 221
R I R Y+A+E + L + E +
Sbjct: 121 VKRWKKPII-IGRHAYGDIYNAVEAKVEGPAEVELVVRNKENKTLLVHKFEGNGVVMAMH 179
Query: 222 ---------AKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPK------ 266
A+ +YA + + + K I K+ F + +E +
Sbjct: 180 NLEKSIRSFAQSCINYA-ISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEELEKAG 238
Query: 267 IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVV 326
+ + M++D+ QI+ + + N G+I+ ++ + G G++ SP+ V
Sbjct: 239 VNYRYMLIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDGVY 297
Query: 327 FEPGA-----RHTY-SEAVGKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAV 373
A RH Y K NPTA + T + + + D + AV
Sbjct: 298 EFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCEFADKLEKAV 357
Query: 374 NRVLKAGK 381
+++G
Sbjct: 358 INTIESGV 365
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 41.3 bits (96), Expect = 3e-04
Identities = 47/311 (15%), Positives = 98/311 (31%), Gaps = 56/311 (18%)
Query: 124 ADSIARNGICLKGVLSTPDYSHTGEL------QTLNMKLRKALD--LYANVVHVKSLPGV 175
A++I + G+ +K TP+ E ++ N +R LD ++ + VK++
Sbjct: 60 AEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPS 119
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIV---------------------- 213
VR V+ R Y E G + +
Sbjct: 120 -VRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGKETRQTIMEVDEPAIVQG 178
Query: 214 ---TAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY------ 264
T A+ F+Y+ + + K I K D F +E+
Sbjct: 179 IHNTVASIGHFARACFEYS-LDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFA 237
Query: 265 -PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE 323
I++ ++D+ +++ + N G+++ ++ + G +++ SP
Sbjct: 238 AAGIEYFYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPY 296
Query: 324 CVVFEPGARHTYS------EAVGKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIR 370
A T + NP A++ T L +L + D +
Sbjct: 297 GYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCAFCDSLE 356
Query: 371 NAVNRVLKAGK 381
+++G
Sbjct: 357 AITIECIESGY 367
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 40.5 bits (94), Expect = 6e-04
Identities = 46/286 (16%), Positives = 99/286 (34%), Gaps = 53/286 (18%)
Query: 124 ADSIARNGICLKGVLSTPDYSHTGEL------QTLNMKLRKALD--LYANVVHVKSLPGV 175
A++I + G+ +K TPD + E ++ N +R L ++ + + +P +
Sbjct: 76 AEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRL 135
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKS----------------- 218
V +I R +Y A + L ++ +
Sbjct: 136 -VPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKGSGV 194
Query: 219 -----------RRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY--- 264
A +F A + + + K I+K DG F + +E+ +
Sbjct: 195 AMAMYNTDESIEGFAHSSFKLA-IDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKS 253
Query: 265 ----PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASW 320
I +E ++D+ Q++ + F +M + N G++ ++ + G G++
Sbjct: 254 KFEQLGIHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGSLGLMTSILV 312
Query: 321 SPECVVFEPGARHTY-------SEAVGKNVANPTAMLLCSTKMLSH 359
+P+ FE A H + + N A + ++ L
Sbjct: 313 TPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLK 358
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.004
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 148 ELQTLNMKLRKALDLYANVVHVKSLPGVKVRHS 180
E Q L KL+ +L LYA+ S P + ++ +
Sbjct: 18 EKQALK-KLQASLKLYAD----DSAPALAIKAT 45
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
adaptation, thermophilic, psychr NADP+ selectivity,
domain movements; 2.35A {Clostridium thermocellum} PDB:
4aou_A
Length = 402
Score = 37.4 bits (86), Expect = 0.006
Identities = 54/311 (17%), Positives = 103/311 (33%), Gaps = 56/311 (18%)
Query: 124 ADSIARNGICLKGVLSTPDYSHTGEL------QTLNMKLRKALD--LYANVVHVKSLPGV 175
A +I + G+ +K TP+ E ++ N +R LD ++ + V S+
Sbjct: 61 ARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPF 120
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTA-------------------- 215
V+ I R Y +E+ L +
Sbjct: 121 -VKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSENGEVSRQTIHEFDGPGVIMG 179
Query: 216 -----EKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFE 270
+ R A+ F+YA + + + K I K D F + +E+ + K +FE
Sbjct: 180 MHNTDKSIRSFARACFNYA-LDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFE 238
Query: 271 Q-------MIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPE 323
++D+ +I+ + V N G+++ ++ + G ++ SP+
Sbjct: 239 AKNLQYFYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPD 297
Query: 324 -CVVFEPG----ARHTYSEAVGK-NVANPTAMLLCSTKMLSHV-------NLQYYGDMIR 370
FE RH Y G+ N A + T L L + +
Sbjct: 298 GKYEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVDFATKLE 357
Query: 371 NAVNRVLKAGK 381
A + ++ G
Sbjct: 358 QASVQTIENGV 368
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 31.2 bits (71), Expect = 0.47
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 219 RRIAKFAFDYATKNNRKKVTAVHKANIMKLGDG 251
R++ A +YA K ++ +M L
Sbjct: 197 RKVNMLAIEYANDRGLKIPISLSHHMLMSLSGP 229
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA
decay, PRE-mRNA splicing, LSM proteins, RNA BI protein;
2.20A {Schizosaccharomyces pombe}
Length = 105
Score = 28.9 bits (65), Expect = 1.0
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 90 SVQEVFKAANVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGEL 149
S + + P+ + + L +NG G L D
Sbjct: 4 SHHHHHHSQD-PMLPLTLLNATQGRPILVEL--------KNGETFNGHLENCD------- 47
Query: 150 QTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVII 187
+N+ LR+ + + LP +R +N+ + I
Sbjct: 48 NYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRI 85
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A
{Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Length = 162
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 52 DGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQE----VFKAANVPVDFEPF 107
+ +G +V ++++ +P+ ++ G G EL+ + + A V P
Sbjct: 16 EAIGVRIVEALEQRYILPDY---VEILDGGTAGMELLGDMANRDHLIIADAIVSKKNAPG 72
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 123
Score = 28.8 bits (64), Expect = 1.3
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 147 GELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALE 199
E TL L L V+ G KV H I+R QT + S +
Sbjct: 36 KEDHTLANMLANQLLSDERVLFA----GYKVPHPLNHNFILRVQTVEDCSPKQ 84
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin
resistance, center for STR genomics of infectious
diseases (csgid); HET: MSE; 2.02A {Enterococcus
faecalis}
Length = 374
Score = 29.4 bits (67), Expect = 2.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP 173
R G+ L GV S T + L + LR L L A VV ++ +
Sbjct: 219 RVGVALYGV-----LSSTNDKTKLELDLRPVLSLKAKVVLIRKIK 258
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding
motif, platform for RNA polymer assembly, transferase;
1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L
2waq_L 2wb1_L 2y0s_L
Length = 92
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 146 TGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALE 199
GE TL + L + V H D +I++ T+G + +
Sbjct: 18 EGEDHTLGNLIAGTLRRISGVSFA----SYYQPHPLSDKIIVKILTDGSITPKD 67
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A
{Pyrococcus horikoshii} SCOP: a.22.1.2
Length = 70
Score = 27.0 bits (60), Expect = 2.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 207 VECLKIVTAEKSRRIAKFAFDYATKNNRKKVTA 239
+ L E + IAK A ++A RK V
Sbjct: 29 AKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKV 61
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB:
1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K
1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K*
1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Length = 120
Score = 28.0 bits (62), Expect = 2.7
Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 17/101 (16%)
Query: 99 NVPVDFEPFFFSEVNPTMSAPLETVADSIARNGICLKGVLSTPDYSHTGELQTLNMKLRK 158
N P FE F E + +T A + + E TL +R
Sbjct: 2 NAPDRFELFLLGEGESKLKIDPDTKAPNAVV-------------ITFEKEDHTLGNLIRA 48
Query: 159 ALDLYANVVHVKSLPGVKVRHSNVDCVIIREQTEGEYSALE 199
L V+ KV H +R QT Y +
Sbjct: 49 ELLNDRKVLFA----AYKVEHPFFARFKLRIQTTEGYDPKD 85
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.50A
{Oenococcus oeni psu-1}
Length = 395
Score = 29.0 bits (66), Expect = 3.0
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP 173
R G + GV + N+ L + + + + V+ +
Sbjct: 224 RPGQLISGVNVSNGELKMPP----NLHLERIFSVCSEIADVRFVK 264
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus
fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A
1bfm_A
Length = 68
Score = 26.5 bits (59), Expect = 3.0
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 207 VECLKIVTAEKSRRIAKFAFDYATKNNRKKVTA 239
L V E IA A A RK + A
Sbjct: 25 RIALAKVLEEMGEEIASEAVKLAKHAGRKTIKA 57
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 28.4 bits (63), Expect = 3.1
Identities = 15/90 (16%), Positives = 30/90 (33%)
Query: 292 VMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLL 351
V PNL + L + L+ AG + + P + GA + P ++
Sbjct: 33 VAPNLKALVGAKLGARLISLAGGLKELAMLPSSTIQVLGAEKALFRHLRTGAKPPKHGVI 92
Query: 352 CSTKMLSHVNLQYYGDMIRNAVNRVLKAGK 381
++ G + R ++ A +
Sbjct: 93 YQYPAINRSPWWQRGKIARALAGKLAIAAR 122
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus}
PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Length = 376
Score = 28.6 bits (63), Expect = 3.5
Identities = 15/80 (18%), Positives = 27/80 (33%)
Query: 291 MVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAML 350
V PNL + LA+ L+ AG + + P + GA + P +
Sbjct: 261 DVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGV 320
Query: 351 LCSTKMLSHVNLQYYGDMIR 370
+ ++ G + R
Sbjct: 321 IYQYPAINRSPWWQRGKIAR 340
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM
barrel, structural genomics, NEW YORK SGX center for
structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Length = 380
Score = 28.6 bits (65), Expect = 3.5
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP-GVKV 177
R G + GV P + KL+ +L + + VK +P G +
Sbjct: 222 RVGTVVYGV--EPS----EGVLGPIDKLKPVFELKSALTFVKKIPAGEGI 265
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP;
2.15A {Staphylococcus aureus} PDB: 3oo2_A
Length = 382
Score = 28.6 bits (65), Expect = 3.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP-GVKV 177
R GI L G + + + L+ ++ L ANVV K+L G V
Sbjct: 219 RPGISLYGYYPSEYVQQK-----VKVHLKPSVQLIANVVQTKTLQAGESV 263
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
phosphonate; HET: IN5; 1.60A {Geobacillus
stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A*
2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A*
1ftx_A* 3uw6_A
Length = 388
Score = 28.6 bits (65), Expect = 4.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP-GVKV 177
R GI + G+ +P L L++A L++ +VHVK L G KV
Sbjct: 219 RFGIAMYGLAPSPGIKPL-----LPYPLKEAFSLHSRLVHVKKLQPGEKV 263
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 27.5 bits (61), Expect = 4.3
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 258 KEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDNL 304
+A+ +P+ +F + IV++C + +P ++ G I
Sbjct: 53 SVLARKFPETKFVKAIVNSC-------IEHYHDNCLPTIFVYKNGQIEGKF 96
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 27.0 bits (60), Expect = 4.5
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 258 KEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDNL 304
+A+ +P+ +F + IV++C + +P ++ G I
Sbjct: 46 SLLARKFPETKFVKAIVNSC-------IQHYHDNCLPTIFVYKNGQIEAKF 89
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET:
PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Length = 371
Score = 28.2 bits (64), Expect = 4.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP-GVKV 177
R G+ + G+ P G + L+ AL L + ++HVK L G +
Sbjct: 222 RYGVAMYGL--NPS----GNKLAPSYALKPALRLTSELIHVKRLAAGEGI 265
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain,
pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP
KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Length = 367
Score = 28.2 bits (64), Expect = 4.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP 173
R G + G+ P G + L L AL L + +VHVK++P
Sbjct: 218 RMGDAMYGL--NPS----GAVLDLPYDLIPALTLESALVHVKTVP 256
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 27.7 bits (61), Expect = 5.0
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 254 LNSC-KEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNL--Y--GNIVDNL 304
LNS + +A YP ++F ++ N +F V+P L Y G ++ N
Sbjct: 138 LNSSLECLAAEYPMVKFCKIRASNTGA-----GDRFSSDVLPTLLVYKGGELISNF 188
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 26.1 bits (58), Expect = 8.0
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 258 KEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVD 302
+ +AK P+++F ++ VD + + ++ V MP G VD
Sbjct: 42 EALAKEIPEVEFAKVDVDQN--EEAA--AKYSVTAMPTFVFIKDGKEVD 86
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX
DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2
c.1.6.1 PDB: 1vfh_A* 1vft_A*
Length = 386
Score = 27.5 bits (62), Expect = 8.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 129 RNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP-GVKV 177
R G+ + GV +P+ +L LR A+ L A++ VK++P G V
Sbjct: 224 RTGLAVYGVSPSPELGTPAQL-----GLRPAMTLRASLALVKTVPAGHGV 268
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 27.3 bits (60), Expect = 9.1
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 195 YSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATK 231
AL C PG+ A K A+ A A
Sbjct: 201 LGALVDSCAPGLCPDWDSWDASKPVTNAREAMQQADD 237
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 26.1 bits (58), Expect = 9.4
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 259 EMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDNL 304
+ ++ YP+ F ++ VD + +V MP L G V +
Sbjct: 48 KFSEQYPQADFYKLDVDELG----DVAQKNEVSAMPTLLLFKNGKEVAKV 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,705,435
Number of extensions: 340607
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 107
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)