RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9726
(381 letters)
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Salmonella typhimurium [TaxId: 90371]}
Length = 363
Score = 235 bits (599), Expect = 5e-75
Identities = 78/331 (23%), Positives = 150/331 (45%), Gaps = 25/331 (7%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSEV--NPTMSAPLETVADSI 127
++PGDG+GPE++ +V A ++ + + + + + +
Sbjct: 6 HIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGC 65
Query: 128 ARNGICLKGVLSTPDYSHTGE----LQTLNMKLRKALDLYANVVHVKSLPGVK------- 176
+ L G + P + + + + LRK L++N+ K G++
Sbjct: 66 EQADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRA 125
Query: 177 -VRHSNVDCVIIREQTEGEYSALEHECVPG----VVECLKIVTAEKSRRIAKFAFDYATK 231
+ + D + +RE T G Y ++ + RIA+ AF+ A +
Sbjct: 126 DIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIAFESA-R 184
Query: 232 NNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVM 291
R+KVT++ KAN+++ L+ ++AK YP ++ M +DN TMQ++ +P QFDV+
Sbjct: 185 KRRRKVTSIDKANVLQ-SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVL 243
Query: 292 VMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLL 351
+ NL+G+I+ + + + G G++ AS + + A + + GKN+ANP A +L
Sbjct: 244 LCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQIL 303
Query: 352 CSTKMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
+L + ++ I A+NR L+ G
Sbjct: 304 SLALLLRYSLDANDAATAIEQAINRALEEGV 334
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 232 bits (592), Expect = 3e-73
Identities = 97/376 (25%), Positives = 159/376 (42%), Gaps = 74/376 (19%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSEV--NPTMSAPLETVADS 126
I GDG GP++ + +V +AA + ++ + E N T D
Sbjct: 23 PFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDV 82
Query: 127 IARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVK---VRHSNVD 183
I I +KG L+TP G +++LN+ LR+ LDL+ + V+ GV R + D
Sbjct: 83 IREYFIAIKGPLTTPVG---GGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTD 139
Query: 184 CVIIREQTEGEYSALEHECVPGVVECL-----------------------KIVTAEKSRR 220
VI RE TE Y+ +E+ V+ L K V+ E + R
Sbjct: 140 MVIFRENTEDIYAGIEYAKGSEEVQKLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSR 199
Query: 221 IAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEM-------------------- 260
+ + A DYA ++ RK VT VHK NIMK +G F N E+
Sbjct: 200 LVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAE 259
Query: 261 -------------AKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASG 307
A+ KI + I D QI++ P++FDV+ NL G+ + + +
Sbjct: 260 EQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAA 319
Query: 308 LVGGAGVVAGASWSPE--CVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYY 365
VGG G+ GA+ + E +FE T + G + NP++++L +L H+
Sbjct: 320 QVGGIGIAPGANINYETGHAIFEA-THGTAPKYAGLDKVNPSSVILSGVLLLEHLGWNEA 378
Query: 366 GDMIRNAVNRVLKAGK 381
D++ ++ + + +
Sbjct: 379 ADLVIKSMEKTIASKV 394
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 226 bits (576), Expect = 5e-71
Identities = 89/363 (24%), Positives = 151/363 (41%), Gaps = 61/363 (16%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAA-------NVPVDFEPFFFSE----VNPTMSAPLETVA 124
I GDG+G ++ ++ +V AA + + + E V
Sbjct: 30 PYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETL 89
Query: 125 DSIARNGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSN--- 181
D I + +KG L+TP G +++LN+ LR+ LDLY + V+ G +
Sbjct: 90 DLIREYRVAIKGPLTTPVG---GGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPEL 146
Query: 182 VDCVIIREQTEGEYSALEHECVPGVVE-----------------------CLKIVTAEKS 218
D VI RE +E Y+ +E + E +K + E +
Sbjct: 147 TDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGT 206
Query: 219 RRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLY-------------- 264
+R+ + A +YA N+R VT VHK NIMK +G F + ++A+
Sbjct: 207 KRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKV 266
Query: 265 ------PKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGA 318
+I + +I D QI+ P ++DV+ NL G+ + + + VGG G+ GA
Sbjct: 267 KNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGA 326
Query: 319 SWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHVNLQYYGDMIRNAVNRVLK 378
+ EC +FE T + G++ NP +++L + ML H+ D+I + +
Sbjct: 327 NIGDECALFEA-THGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAIN 385
Query: 379 AGK 381
A
Sbjct: 386 AKT 388
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 217 bits (553), Expect = 4e-68
Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 25/328 (7%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSAPLET-------VADS 126
K ++PGDG+GPE+V +V + F + A
Sbjct: 10 KIAVLPGDGIGPEVVREALKVLEVVEKKTGKT-FEKVFGHIGGDAIDRFGEPLPEETKKI 68
Query: 127 IARNGICLKGVLSTPDYSHTGELQT----LNMKLRKALDLYANVVHVKSLPGVKVRHS-- 180
G + P + + + LRK L+LYAN+ +K +
Sbjct: 69 CLEADAIFLGSVGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLK 128
Query: 181 ------NVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNR 234
VD V +RE + G Y I + RIA+ AF+ KN R
Sbjct: 129 EKVIGSGVDLVTVRELSYGVYYGQPRGLDEEKGFDTMIYDRKTVERIARTAFEI-AKNRR 187
Query: 235 KKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMP 294
KKVT+V KAN++ L+ E+A+ YP ++ + VDN MQ++ P QFDV++
Sbjct: 188 KKVTSVDKANVLY-SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILTT 246
Query: 295 NLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCST 354
N++G+I+ + ++ L G G++ AS+ + + G + + GKN+ANP A +L
Sbjct: 247 NMFGDILSDESAALPGSLGLLPSASFGDKNLYEPAG--GSAPDIAGKNIANPIAQILSLA 304
Query: 355 KMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
ML H + I AV V++ G
Sbjct: 305 MMLEHSFGMVEEARKIERAVELVIEEGY 332
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermus thermophilus [TaxId: 274]}
Length = 345
Score = 214 bits (546), Expect = 3e-67
Identities = 92/325 (28%), Positives = 153/325 (47%), Gaps = 20/325 (6%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAAN----VPVDFEPFFFSE--VNPTMSAPLETVADSI 127
K ++PGDG+GPE+ + +V +A + + + +E F F ++ E +
Sbjct: 2 KVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGV 61
Query: 128 ARNGICLKGVLSTPDYSH---TGELQTLNMKLRKALDLYANVVHVKSLPGVKVR------ 178
L G + P + +T + LRK+ DL+AN+ K PG++
Sbjct: 62 EEAEAVLLGSVGGPKWDGLPRKIRPETGLLSLRKSQDLFANLRPAKVFPGLERLSPLKEE 121
Query: 179 -HSNVDCVIIREQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKV 237
VD +I+RE T G Y + + + R+A+ AF+ A + RK V
Sbjct: 122 IARGVDVLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEVA-RKRRKHV 180
Query: 238 TAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY 297
+V KAN++++G+ + +E+ + YP + E VD M +V +P +FDV+V N++
Sbjct: 181 VSVDKANVLEVGEFWR-KTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIF 239
Query: 298 GNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKML 357
G+I+ +LAS L G G++ AS VFEP + GK +ANPTA +L + ML
Sbjct: 240 GDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGS-APDIAGKGIANPTAAILSAAMML 298
Query: 358 SHV-NLQYYGDMIRNAVNRVLKAGK 381
H L + +AV + L
Sbjct: 299 EHAFGLVELARKVEDAVAKALLETP 323
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thiobacillus ferrooxidans [TaxId: 920]}
Length = 357
Score = 214 bits (546), Expect = 3e-67
Identities = 89/331 (26%), Positives = 154/331 (46%), Gaps = 28/331 (8%)
Query: 74 KCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVNPTMSA--------PLETVAD 125
K + GDG+GPE+V + ++V A + +E +A P ++
Sbjct: 3 KIAIFAGDGIGPEIVAAARQVLDAVDQAAHL-GLRCTEGLVGGAALDASDDPLPAASLQL 61
Query: 126 SIARNGICLKGVLSTPDYSHTGELQT---LNMKLRKALDLYANVVHVKSLPGVKVRHS-- 180
++A + + + G + P + + ++LRK LDLYAN+ + P +
Sbjct: 62 AMAADAV-ILGAVGGPRWDAYPPAKRPEQGLLRLRKGLDLYANLRPAQIFPQLLDASPLR 120
Query: 181 -----NVDCVIIREQTEGEYSALEHECVPG----VVECLKIVTAEKSRRIAKFAFDYATK 231
+VD +++RE T Y + ++ RRIA AF A +
Sbjct: 121 PELVRDVDILVVRELTGDIYFGQPRGLEVIDGKRRGFNTMVYDEDEIRRIAHVAF-RAAQ 179
Query: 232 NNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVM 291
RK++ +V KAN+++ L+ E+A+ YP ++ M VDN MQ++ P QFDV+
Sbjct: 180 GRRKQLCSVDKANVLETTR-LWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVL 238
Query: 292 VMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLL 351
+ N++G+I+ + AS L G G++ AS ++EP + + G++ ANP A +L
Sbjct: 239 LTGNMFGDILSDEASQLTGSIGMLPSASLGEGRAMYEP-IHGSAPDIAGQDKANPLATIL 297
Query: 352 CSTKMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
ML H +N + + + AV RVL G
Sbjct: 298 SVAMMLRHSLNAEPWAQRVEAAVQRVLDQGL 328
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 337
Score = 211 bits (539), Expect = 2e-66
Identities = 84/321 (26%), Positives = 146/321 (45%), Gaps = 14/321 (4%)
Query: 73 TKCTLIPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEV--NPTMSAPLETVADSIARN 130
+K +I GDG+GPE+ +V A V + + T ++V + +
Sbjct: 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNH 61
Query: 131 GICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLP---GVKVRHSNVDCVII 187
L G + P + L ++LR LD + N+ + P + +D V++
Sbjct: 62 DAILLGAIGDPSVPSGVLERGLLLRLRFELDHHINLRPARLYPGVASPLSGNPGIDFVVV 121
Query: 188 REQTEGEYSALEHECVPG----VVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKA 243
RE TEG Y+ G V + + TA RR+ AF+ + RK +T VHK
Sbjct: 122 REGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFER-ARRRRKHLTLVHKT 180
Query: 244 NIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDN 303
N++ GL+L + E+ + YP ++ VD T+ ++++P +FDV+V NL+G+I+ +
Sbjct: 181 NVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITD 240
Query: 304 LASGLVGGAGVVAGAS---WSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV 360
LA+ + GG G+ A + +FEP + G+ +A+PTA ++ +LSH+
Sbjct: 241 LAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAP-DIAGQGIADPTAAIMSVALLLSHL 299
Query: 361 NLQYYGDMIRNAVNRVLKAGK 381
+ AV L
Sbjct: 300 GEHDAAARVDRAVEAHLATRG 320
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
{Bacillus coagulans [TaxId: 1398]}
Length = 356
Score = 211 bits (538), Expect = 4e-66
Identities = 93/330 (28%), Positives = 151/330 (45%), Gaps = 22/330 (6%)
Query: 72 RTKCTLIPGDGVGPELVYSVQEVFKAA----NVPVDFEPFFFSE--VNPTMSAPLETVAD 125
+ K ++PGDG+GPE++ + V K FE ++ + E D
Sbjct: 2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLD 61
Query: 126 SIARNGICLKGVLSTPDYSHTGE---LQTLNMKLRKALDLYANVVHVKSL-------PGV 175
R+ L G + P + H + + LRK + L+AN+ VK+ P
Sbjct: 62 ICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLK 121
Query: 176 KVRHSNVDCVIIREQTEGEYSALEHECVPGVVEC---LKIVTAEKSRRIAKFAFDYATKN 232
+ R NVD VI+RE T G Y E T E+ RI + AF A
Sbjct: 122 RERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTREEIERIIEKAFQLAQIR 181
Query: 233 NRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMV 292
KK+ +V KAN+++ ++ +E AK YP ++ M+VD+ +MQ+++NP QFDV+V
Sbjct: 182 R-KKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIV 239
Query: 293 MPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLC 352
N++G+I+ + AS + G G++ AS + + + G+ ANP +L
Sbjct: 240 TENMFGDILSDEASVITGSLGMLPSASLRSDRFGMYEPVHGSAPDIAGQGKANPLGTVLS 299
Query: 353 STKMLSH-VNLQYYGDMIRNAVNRVLKAGK 381
+ ML + L+ I AV+ VL+ G
Sbjct: 300 AALMLRYSFGLEKEAAAIEKAVDDVLQDGY 329
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 413
Score = 185 bits (470), Expect = 2e-55
Identities = 51/360 (14%), Positives = 104/360 (28%), Gaps = 58/360 (16%)
Query: 78 IPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVN--PTMSAPLETVADSIARNGICLK 135
+ GD + + ++E +V V + F N T A + + + +K
Sbjct: 14 MDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVK 73
Query: 136 GVLSTPDYSH------TGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHS-NVDCVIIR 188
TPD + ++ N +R L + ++ I R
Sbjct: 74 CATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGR 133
Query: 189 EQTEGEYSALEHECVPGVVECLKIVTAE--------------------------KSRRIA 222
+Y A + + + A
Sbjct: 134 HAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFA 193
Query: 223 KFAFDYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPK-------IQFEQMIVD 275
F + + K I+K DG F + +E+ + + K I +E ++D
Sbjct: 194 HSCF-QYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLID 252
Query: 276 NCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTY 335
+ Q++ V N G++ ++ + G G++ P+ E A H
Sbjct: 253 DMVAQVL-KSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 311
Query: 336 -------SEAVGKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGK 381
+ NP A + T+ L H +L + + +++G
Sbjct: 312 VTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGA 371
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 178 bits (453), Expect = 1e-53
Identities = 105/319 (32%), Positives = 159/319 (49%), Gaps = 24/319 (7%)
Query: 76 TLIPGDGVGPELVYSVQEVFKAAN----VPVDFEPFFFSE--VNPTMSAPLETVADSIAR 129
LI GDG+GPE+V + + N +P+++ + + A + I +
Sbjct: 5 ALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDK 64
Query: 130 NGICLKGVLSTPDYSHTGELQTLNMKLRKALDLYANVVHVKSLPGVKVRHSNVDCVIIRE 189
I LKG + +KLR+ D+YAN+ KS+PG+ ++ NVD +I+RE
Sbjct: 65 ADIILKGPVGESAADV-------VVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRE 117
Query: 190 QTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLG 249
TE Y EH GV +KI+T S RIAK ++A RKKVT VHKAN+M++
Sbjct: 118 NTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFA-LRRRKKVTCVHKANVMRIT 176
Query: 250 DGLFLNSCKEMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLV 309
DGLF +C+ + K+++ +M VD +V NP FDV+V N+YG+I+ + AS +
Sbjct: 177 DGLFAEACRSVL--KGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIA 234
Query: 310 GGAGVVAGASWSPECVVFEPGARHTYSEAVGKNVANPTAMLLCSTKMLSHV-------NL 362
G G+ A+ + +FEP + A GKN+ NPTA LL + M +
Sbjct: 235 GSLGIAPSANIGDKKALFEPVHGAAFDIA-GKNIGNPTAFLLSVSMMYERMYELSNDDRY 293
Query: 363 QYYGDMIRNAVNRVLKAGK 381
+ NA+ V K K
Sbjct: 294 IKASRALENAIYLVYKERK 312
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 414
Score = 177 bits (449), Expect = 3e-52
Identities = 51/360 (14%), Positives = 110/360 (30%), Gaps = 57/360 (15%)
Query: 78 IPGDGVGPELVYSVQEVFKAANVPVDFEPFFFSEVN--PTMSAPLETVADSIARNGICLK 135
+ GD + + ++E V +D + N T + A++I ++ + +K
Sbjct: 13 MQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVK 72
Query: 136 GVLSTPDYSHTGEL------QTLNMKLRKALDLYANVVHVKSLPGVKVRHS-NVDCVIIR 188
TPD E ++ N +R L + ++ +I R
Sbjct: 73 CATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGR 132
Query: 189 EQTEGEYSALEHECVPGVVECLKIVTAEKSRRIAKFAF---------------------- 226
+Y A + + ++ ++++
Sbjct: 133 HAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDF 192
Query: 227 ----DYATKNNRKKVTAVHKANIMKLGDGLFLNSCKEMAKLYPKIQF-------EQMIVD 275
+ + K I+K DG F + +E+ K QF E ++D
Sbjct: 193 AHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLID 252
Query: 276 NCTMQIVSNPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTY 335
+ Q + + + N G++ + + G G++ P+ E A H
Sbjct: 253 DMVAQAMKSE-GGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGT 311
Query: 336 SEAV-------GKNVANPTAMLLCSTKMLSHV-------NLQYYGDMIRNAVNRVLKAGK 381
+ NP A + T+ L+H L ++ + + ++AG
Sbjct: 312 VTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGF 371
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 29.4 bits (66), Expect = 0.72
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 6/77 (7%)
Query: 284 NPHQFDVMVMPNLYGNIVDNLASGLVGGAGVVAGASWSPECVVFEPGARHTYSEAVGKNV 343
D+ V P + G A G V+A + + VG
Sbjct: 78 RGDAVDIAVDP-IEGT--RMTAMGQANALAVLA---VGDKGCFLNAPDMYMEKLIVGPGA 131
Query: 344 ANPTAMLLCSTKMLSHV 360
+ L L +V
Sbjct: 132 KGTIDLNLPLADNLRNV 148
>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 28.3 bits (63), Expect = 1.0
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 52 DGVGPELVYSVQEHQSVPEGRTKCTLIPGDGVGPELVYSVQEV 94
+ +G +V ++++ +P+ ++ G G EL+ +
Sbjct: 16 EAIGVRIVEALEQRYILPDY---VEILDGGTAGMELLGDMANR 55
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP
oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 201
Score = 27.0 bits (59), Expect = 3.3
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 335 YSEAVGKNVANPTAMLLCSTK----MLSHVNLQYYGD 367
++A V+ P AM+L + + V + +
Sbjct: 26 LNDAQRAGVSEPNAMVLATVADGKPVTRSVLCKILDE 62
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 25.1 bits (55), Expect = 4.3
Identities = 11/42 (26%), Positives = 12/42 (28%)
Query: 206 VVECLKIVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMK 247
L V E IA A A RK + A K
Sbjct: 25 ARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 66
>d1of8a_ c.1.10.4 (A:) 3-deoxy-D-arabino-heptulosonate-7-phosphate
synthase (DAHP synthase, AroG) {Baker's yeast
(Saccharomyces cerevisiae), tyrosine-regulated isozyme
[TaxId: 4932]}
Length = 346
Score = 26.4 bits (58), Expect = 6.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 350 LLCSTKMLSHVNLQYYGDMIR 370
L ++ML ++ QY D++
Sbjct: 131 LPIGSEMLDTISPQYLADLVS 151
>d1xuba1 d.21.1.2 (A:1-128) Phenazine biosynthesis protein PhzF
{Pseudomonas fluorescens [TaxId: 294]}
Length = 128
Score = 25.7 bits (56), Expect = 6.1
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 293 MPNLYGNIVDNLASGLVGG--AGVVAGASWSPECVVFEPGARHTYSEAV 339
M N I+D AS + G V A P + SE+
Sbjct: 1 MHNYV--IIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSEST 47
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 26.4 bits (58), Expect = 6.3
Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 18/161 (11%)
Query: 109 FSEVNPTMSAPLETVADSIARNGI-----CLKGVLSTPDY-----SHTGE-LQTLNMKLR 157
E + + + + + L+ + P+Y H + + TL L+
Sbjct: 159 LVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQ 218
Query: 158 KALDLYANVVHVKSLP---GVKVRHSNVDCVII---REQTEGEYSALEHECVPGVVECLK 211
+A D V + G+++++ ++ + + E +++ +K
Sbjct: 219 RATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVK 278
Query: 212 IVTAEKSRRIAKFAFDYATKNNRKKVTAVHKANIMKLGDGL 252
I EK R+ K+ V ++ LG+ L
Sbjct: 279 ITIKEKVSRLCISIILQCCSTRVKQHKKVI-KQLLLLGNAL 318
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,370,046
Number of extensions: 61942
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 28
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)