BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9727
(257 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DUO|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN, CA2+-
Bound Form
pdb|2DUO|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN, CA2+-
Bound Form
pdb|2DUP|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
METAL-Free Form
pdb|2DUP|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
METAL-Free Form
pdb|2DUQ|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN-Bound Form
pdb|2DUQ|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN-Bound Form
pdb|2DUR|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
CA2+MAN2-Bound Form
pdb|2DUR|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
CA2+MAN2-Bound Form
pdb|2E6V|A Chain A, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|B Chain B, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|C Chain C, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|D Chain D, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
pdb|2E6V|E Chain E, Crystal Structure Of Vip36 ExoplasmicLUMENAL DOMAIN,
Ca2+MAN3GLCNAC-Bound Form
Length = 253
Score = 163 bits (413), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 121/232 (52%), Gaps = 48/232 (20%)
Query: 28 LKRHHSMVKPYLTSGLS-IPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWE 86
LKR HS++KPY G S +P WD G + +S YVRLT D +S+ G+IWN P ++ +WE
Sbjct: 6 LKREHSLIKPYQGVGSSSMPLWDFQGSTILTSQYVRLTPDERSKEGSIWNHQPCFLKDWE 65
Query: 87 VQITLKIHGKGKE-LFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNH 145
+ + K+HG GK+ L GDG+A WY RDR+ GPVFG+KD F GL + +DTY N +
Sbjct: 66 MHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPN-DETTER 124
Query: 146 NHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYD 205
PY+S MVNNGSL YDH DG T+L
Sbjct: 125 VFPYISVMVNNGSLSYDHSKDGRWTEL--------------------------------- 151
Query: 206 HDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSKGPFINL 257
AGC RN +HDT +A+RY LTV + DL K + N
Sbjct: 152 ----------AGCTADFRNRDHDTFLAVRYSRGRLTV--MTDLEDKNEWKNC 191
>pdb|3A4U|A Chain A, Crystal Structure Of Mcfd2 In Complex With Carbohydrate
Recognition Domain Of Ergic-53
Length = 255
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 31 HHSMVKPYLT-SGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQI 89
+S P+L S ++P+W G A+ SS+ +R+ L+S+ G++W NWEV++
Sbjct: 19 KYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEV 78
Query: 90 TLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPY 149
T ++ G+G+ + DG+A WY ++ GPVFG+ D ++G+G+ D++ N + N+P
Sbjct: 79 TFRVTGRGR-IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDN---DGKKNNPA 134
Query: 150 LSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNH----NGEHNHNHPYLSAMVNNG 200
+ + NNG +HYDH DG LA + N + + L+ M+NNG
Sbjct: 135 IVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNG 189
>pdb|3LCP|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
Of Complex With Mcfd2
pdb|3LCP|B Chain B, Crystal Structure Of The Carbohydrate Recognition Domain
Of Complex With Mcfd2
Length = 247
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 31 HHSMVKPYLT-SGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQI 89
+S P+L S ++P+W G A+ SS+ +R+ L+S+ G++W NWEV++
Sbjct: 19 KYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEV 78
Query: 90 TLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPY 149
T ++ G+G+ + DG+A WY ++ GPVFG+ D ++G+G+ D++ N + N+P
Sbjct: 79 TFRVTGRGR-IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDN---DGKKNNPA 134
Query: 150 LSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNH----NGEHNHNHPYLSAMVNNG 200
+ + NNG +HYDH DG LA + N + + L+ M+NNG
Sbjct: 135 IVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNG 189
>pdb|1GV9|A Chain A, P58ERGIC-53
Length = 260
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 31 HHSMVKPYLT-SGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQI 89
+S P+L S ++P+W G A+ S++ +R+ L+S+ G++W NWEV++
Sbjct: 33 KYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEV 92
Query: 90 TLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPY 149
T ++ G+G+ + DG+A WY ++ GPVFG+ D ++G+G+ D++ N + N+P
Sbjct: 93 TFRVTGRGR-IGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDN---DGKKNNPA 148
Query: 150 LSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNH----NGEHNHNHPYLSAMVNNG 200
+ + NNG ++YDH DG LA + N + + L+ M+NNG
Sbjct: 149 IVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNG 203
>pdb|1R1Z|A Chain A, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
pdb|1R1Z|B Chain B, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
pdb|1R1Z|C Chain C, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
pdb|1R1Z|D Chain D, The Crystal Structure Of The Carbohydrate Recognition
Domain Of The Glycoprotein Sorting Receptor P58ERGIC-53
Reveals A Novel Metal Binding Site And Conformational
Changes Associated With Calcium Ion Binding
Length = 263
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 31 HHSMVKPYLT-SGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQI 89
+S P+L S ++P+W G A+ S++ +R+ L+S+ G++W NWEV++
Sbjct: 36 KYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEV 95
Query: 90 TLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPY 149
T ++ G+G+ + DG+A WY ++ GPVFG+ D ++G+G+ D++ N + N+P
Sbjct: 96 TFRVTGRGR-IGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDN---DGKKNNPA 151
Query: 150 LSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNH----NGEHNHNHPYLSAMVNNG 200
+ + NNG ++YDH DG LA + N + + L+ M+NNG
Sbjct: 152 IVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNG 206
>pdb|3OJW|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
Length = 622
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 159 LHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGC 218
+H D D+ +T + +Y N + +P+L+A+ N L+ + H +L
Sbjct: 193 VHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDIS 252
Query: 219 ECKLRNLNHDTHIAIRYEDENLTVSGVNDLL 249
+ K+R + D H+A+ +++ V+ + ++L
Sbjct: 253 DSKIRYESGD-HVAVYPANDSALVNQIGEIL 282
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 159 LHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGC 218
+H D D+ +T + +Y N + +P+L+A+ N L+ + H +L
Sbjct: 193 VHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDIS 252
Query: 219 ECKLRNLNHDTHIAIRYEDENLTVSGVNDLL 249
+ K+R + D H+A+ +++ V+ + ++L
Sbjct: 253 DSKIRYESGD-HVAVYPANDSALVNQIGEIL 282
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 159 LHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGC 218
+H D D+ +T + +Y N + +P+L+A+ N L+ + H +L
Sbjct: 189 VHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDIS 248
Query: 219 ECKLRNLNHDTHIAIRYEDENLTVSGVNDLL 249
+ K+R + D H+A+ +++ V+ + ++L
Sbjct: 249 DSKIRYESGD-HVAVYPANDSALVNQIGEIL 278
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 159 LHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGC 218
+H D D+ +T + +Y N + +P+L+A+ N L+ + H +L
Sbjct: 193 VHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDIS 252
Query: 219 ECKLRNLNHDTHIAIRYEDENLTVSGVNDLL 249
+ K+R + D H+A+ +++ V+ + ++L
Sbjct: 253 DSKIRYESGD-HVAVYPANDSALVNQIGEIL 282
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 159 LHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGC 218
+H D D+ +T + +Y N + +P+L+A+ N L+ + H +L
Sbjct: 186 VHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDIS 245
Query: 219 ECKLRNLNHDTHIAIRYEDENLTVSGVNDLL 249
+ K+R + D H+A+ +++ V+ + ++L
Sbjct: 246 DSKIRYESGD-HVAVYPANDSALVNQIGEIL 275
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 159 LHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAGC 218
+H D D+ +T + +Y N + +P+L+A+ N L+ + H +L
Sbjct: 193 VHEDMDVAKVYTGEMGRLKSYENQKPPFDAKNPFLAAVTANRKLNQGTERHLMHLELDIS 252
Query: 219 ECKLRNLNHDTHIAIRYEDENLTVSGVNDLL 249
+ K+R + D H+A+ +++ V+ + ++L
Sbjct: 253 DSKIRYESGD-HVAVYPANDSALVNQIGEIL 282
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 127 SGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEH 186
+G+ VIID NH E NH P LS + + +Y D L ++
Sbjct: 279 AGIEVIIDVVYNHTAEGNHLGPTLSFRGIDNTAYYMLQPDNKRYYL-----DFTGTGNTL 333
Query: 187 NHNHPYLSAMVNNGSLHYDHDM--DGTHTQLAGCECK 221
N +HP + MV + ++ +M DG LA +
Sbjct: 334 NLSHPRVIQMVLDSLRYWVTEMHVDGFRFDLAAALAR 370
>pdb|1BJQ|A Chain A, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|B Chain B, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|C Chain C, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|D Chain D, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|E Chain E, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|F Chain F, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|G Chain G, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1BJQ|H Chain H, The Dolichos Biflorus Seed Lectin In Complex With Adenine
pdb|1LU2|A Chain A, Dolichos Biflorus Seed Lectin In Complex With The Blood
Group A Trisaccharide
pdb|1LU2|B Chain B, Dolichos Biflorus Seed Lectin In Complex With The Blood
Group A Trisaccharide
pdb|1LU1|A Chain A, The Structure Of The Dolichos Biflorus Seed Lectin In
Complex With The Forssman Disaccharide
Length = 253
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 46 PYWDVHGFALASSNYVRLTA------DLQSRYGAIWNTVPVYM--------NNWEVQITL 91
P + + G A SS ++LT S G + + P+ + +W T+
Sbjct: 14 PSFILQGDATVSSGKLQLTKVKENGIPTPSSLGRAFYSSPIQIYDKSTGAVASWATSFTV 73
Query: 92 KIHGKGKELFGDGMAFWYV----RDRMEGG 117
KI K F DG+AF V R GG
Sbjct: 74 KISAPSKASFADGIAFALVPVGSEPRRNGG 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,170,101
Number of Sequences: 62578
Number of extensions: 413636
Number of successful extensions: 1158
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 48
length of query: 257
length of database: 14,973,337
effective HSP length: 97
effective length of query: 160
effective length of database: 8,903,271
effective search space: 1424523360
effective search space used: 1424523360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)