RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9727
(257 letters)
>gnl|CDD|173889 cd06901, lectin_VIP36_VIPL, VIP36 and VIPL type 1 transmembrane
proteins, lectin domain. The vesicular integral protein
of 36 kDa (VIP36) is a type 1 transmembrane protein of
the mammalian early secretory pathway that acts as a
cargo receptor transporting high mannose type
glycoproteins between the Golgi and the endoplasmic
reticulum (ER). Lectins of the early secretory pathway
are involved in the selective transport of newly
synthesized glycoproteins from the ER to the ER-Golgi
intermediate compartment (ERGIC). The most prominent
cycling lectin is the mannose-binding type1 membrane
protein ERGIC-53, which functions as a cargo receptor to
facilitate export of glycoproteins from the ER. L-type
lectins have a dome-shaped beta-barrel carbohydrate
recognition domain with a curved seven-stranded
beta-sheet referred to as the "front face" and a flat
six-stranded beta-sheet referred to as the "back face".
This domain homodimerizes so that adjacent back sheets
form a contiguous 12-stranded sheet and homotetramers
occur by a back-to-back association of these homodimers.
Though L-type lectins exhibit both sequence and
structural similarity to one another, their carbohydrate
binding specificities differ widely.
Length = 248
Score = 267 bits (684), Expect = 2e-90
Identities = 104/217 (47%), Positives = 127/217 (58%), Gaps = 43/217 (19%)
Query: 27 FLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWE 86
+LKR HS++KPY G S+P WD G + +S Y+RLT D QS+ G+IWN VP Y+ +WE
Sbjct: 1 YLKREHSLIKPYQGVGSSMPLWDFLGSTMVTSQYIRLTPDHQSKQGSIWNRVPCYLRDWE 60
Query: 87 VQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHN 146
+ + K+HG GK LFGDG A WY ++RM+ GPVFG+KD F GL
Sbjct: 61 MHVHFKVHGSGKNLFGDGFAIWYTKERMQPGPVFGSKDNFHGL----------------- 103
Query: 147 HPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDH 206
A+ DTYSN NGEH H HPY+SAMVNNGSL YDH
Sbjct: 104 --------------------------AIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDH 137
Query: 207 DMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVS 243
D DGTHT+LAGC RN +HDT +AIRY LTV
Sbjct: 138 DRDGTHTELAGCSAPFRNKDHDTFVAIRYSKGRLTVM 174
>gnl|CDD|217528 pfam03388, Lectin_leg-like, Legume-like lectin family. Lectins are
structurally diverse proteins that bind to specific
carbohydrates. This family includes the VIP36 and
ERGIC-53 lectins. These two proteins were the first
recognised members of a family of animal lectins similar
(19-24%) to the leguminous plant lectins. The alignment
for this family aligns residues lying towards the
N-terminus, where the similarity of VIP36 and ERGIC-53
is greatest. However, while Fiedler and Simons
identified these proteins as a new family of animal
lectins, our alignment also includes yeast sequences.
ERGIC-53 is a 53kD protein, localised to the
intermediate region between the endoplasmic reticulum
and the Golgi apparatus (ER-Golgi-Intermediate
Compartment, ERGIC). It was identified as a
calcium-dependent, mannose-specific lectin. Its
dysfunction has been associated with combined factors V
and VIII deficiency OMIM:227300 OMIM:601567, suggesting
an important and substrate-specific role for ERGIC-53 in
the glycoprotein- secreting pathway.
Length = 226
Score = 197 bits (503), Expect = 2e-63
Identities = 82/219 (37%), Positives = 112/219 (51%), Gaps = 48/219 (21%)
Query: 26 DFLKRHHSMVKPYLTSGL-SIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNN 84
D K HS+ PYL G SIP+W+ G A+ SS Y+RLT DLQS+ G++WN P+ +++
Sbjct: 1 DRFKYKHSLKAPYLGQGDGSIPFWEYGGSAILSSGYIRLTPDLQSQKGSLWNKQPLDLDS 60
Query: 85 WEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHN 144
WEV++T ++HG G L GDG+A WY +R GPVFG+KD + GL + +DTY N N
Sbjct: 61 WEVEVTFRVHGSG-RLGGDGLAIWYTSERGVPGPVFGSKDNWDGLAIFLDTYDNDNQ--- 116
Query: 145 HNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHY 204
+PY+S M+N+GS Y
Sbjct: 117 -------------------------------------------TLNPYISGMLNDGSKPY 133
Query: 205 DHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVS 243
DH DGT +LA C RN ++ T I I Y+ LTV
Sbjct: 134 DHTKDGTDQELASCTADFRNKDYPTRIRITYDKNTLTVM 172
>gnl|CDD|173892 cd07308, lectin_leg-like, legume-like lectins: ERGIC-53, ERGL,
VIP36, VIPL, EMP46, and EMP47. The legume-like
(leg-like) lectins are eukaryotic intracellular sugar
transport proteins with a carbohydrate recognition
domain similar to that of the legume lectins. This
domain binds high-mannose-type oligosaccharides for
transport from the endoplasmic reticulum to the Golgi
complex. These leg-like lectins include ERGIC-53, ERGL,
VIP36, VIPL, EMP46, EMP47, and the UIP5
(ULP1-interacting protein 5) precursor protein.
Leg-like lectins have different intracellular
distributions and dynamics in the endoplasmic
reticulum-Golgi system of the secretory pathway and
interact with N-glycans of glycoproteins in a
calcium-dependent manner, suggesting a role in
glycoprotein sorting and trafficking. L-type lectins
have a dome-shaped beta-barrel carbohydrate recognition
domain with a curved seven-stranded beta-sheet referred
to as the "front face" and a flat six-stranded
beta-sheet referred to as the "back face". This domain
homodimerizes so that adjacent back sheets form a
contiguous 12-stranded sheet and homotetramers occur by
a back-to-back association of these homodimers. Though
L-type lectins exhibit both sequence and structural
similarity to one another, their carbohydrate binding
specificities differ widely.
Length = 218
Score = 139 bits (352), Expect = 9e-41
Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 6/156 (3%)
Query: 29 KRHHSMVKPYL-TSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEV 87
HS+ P+L + I W V G + + NY+RLT D+ S+ G++W+ VP+ ++E+
Sbjct: 2 ISEHSLSPPFLDDNDGEIGNWTVGGSTVITKNYIRLTPDVPSQSGSLWSRVPIPAKDFEI 61
Query: 88 QITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNH 147
++ IHG G L GDG AFWY + GP+FG D F GL + DTY N
Sbjct: 62 EVEFSIHG-GSGLGGDGFAFWYTEEPGSDGPLFGGPDKFKGLAIFFDTYDNDGK----GF 116
Query: 148 PYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHN 183
P +S +N+G+ YD++ DG +LA + N N
Sbjct: 117 PSISVFLNDGTKSYDYETDGEKLELASCSLKFRNSN 152
>gnl|CDD|173890 cd06902, lectin_ERGIC-53_ERGL, ERGIC-53 and ERGL type 1
transmembrane proteins, N-terminal lectin domain.
ERGIC-53 and ERGL, N-terminal carbohydrate recognition
domain. ERGIC-53 and ERGL are eukaryotic mannose-binding
type 1 transmembrane proteins of the early secretory
pathway that transport newly synthesized glycoproteins
from the endoplasmic reticulum (ER) to the ER-Golgi
intermediate compartment (ERGIC). ERGIC-53 and ERGL
have an N-terminal lectin-like carbohydrate recognition
domain (represented by this alignment model) as well as
a C-terminal transmembrane domain. ERGIC-53 functions
as a 'cargo receptor' to facilitate the export of
glycoproteins with different characteristics from the
ER, while the ERGIC-53-like protein (ERGL) which may act
as a regulator of ERGIC-53. In mammals, ERGIC-53 forms
a complex with MCFD2 (multi-coagulation factor
deficiency 2) which then recruits blood coagulation
factors V and VIII. Mutations in either MCFD2 or
ERGIC-53 cause a mild form of inherited hemophilia known
as combined deficiency of factors V and VIII (F5F8D). In
addition to the lectin and transmembrane domains,
ERGIC-53 and ERGL have a short N-terminal cytoplasmic
region of about 12 amino acids. ERGIC-53 forms
disulphide-linked homodimers and homohexamers. ERGIC-53
and ERGL are sequence-similar to the lectins of
leguminous plants. L-type lectins have a dome-shaped
beta-barrel carbohydrate recognition domain with a
curved seven-stranded beta-sheet referred to as the
"front face" and a flat six-stranded beta-sheet referred
to as the "back face". This domain homodimerizes so
that adjacent back sheets form a contiguous 12-stranded
sheet and homotetramers occur by a back-to-back
association of these homodimers. Though L-type lectins
exhibit both sequence and structural similarity to one
another, their carbohydrate binding specificities differ
widely.
Length = 225
Score = 137 bits (347), Expect = 7e-40
Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 48/213 (22%)
Query: 32 HSMVKPYLT-SGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYMNNWEVQIT 90
+S P+L ++P+W G A+AS VRLT L+S+ G++W P NWEV++T
Sbjct: 7 YSFKGPHLAQKDGTVPFWSHGGDAIASLEQVRLTPSLRSKKGSVWTKNPFSFENWEVEVT 66
Query: 91 LKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYL 150
++ G+G+ + DG+A WY ++R E GPVFG+ D ++G+G+ D++ N
Sbjct: 67 FRVTGRGR-IGADGLAIWYTKERGEEGPVFGSSDKWNGVGIFFDSFDN------------ 113
Query: 151 SAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDG 210
+ N+P + + N+G+ YDH DG
Sbjct: 114 ----------------------------------DGKKNNPAILVVGNDGTKSYDHQNDG 139
Query: 211 THTQLAGCECKLRNLNHDTHIAIRYEDENLTVS 243
L C RN + I Y LTVS
Sbjct: 140 LTQALGSCLRDFRNKPYPVRAKITYYQNVLTVS 172
>gnl|CDD|173886 cd01951, lectin_L-type, legume lectins. The L-type (legume-type)
lectins are a highly diverse family of carbohydrate
binding proteins that generally display no enzymatic
activity toward the sugars they bind. This family
includes arcelin, concanavalinA, the lectin-like
receptor kinases, the ERGIC-53/VIP36/EMP46 type1
transmembrane proteins, and an alpha-amylase inhibitor.
L-type lectins have a dome-shaped beta-barrel
carbohydrate recognition domain with a curved
seven-stranded beta-sheet referred to as the "front
face" and a flat six-stranded beta-sheet referred to as
the "back face". This domain homodimerizes so that
adjacent back sheets form a contiguous 12-stranded sheet
and homotetramers occur by a back-to-back association of
these homodimers. Though L-type lectins exhibit both
sequence and structural similarity to one another, their
carbohydrate binding specificities differ widely.
Length = 223
Score = 49.0 bits (117), Expect = 5e-07
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 57 SSNYVRLTADLQSRYGAIWNTVPVYMN-NWEVQITLKIHGKGKELFGDGMAFWYVRDRM- 114
S +RLT D ++ G+ W P+ ++ ++ + KG DG+AF D
Sbjct: 27 DSGVLRLTPDTGNQAGSAWYKTPIDLSKDFTTTFKFYLGTKGT-NGADGIAFVLQNDPAG 85
Query: 115 -----EGGPVFGNKDFFSGLGVIIDTYSN-HNGEHNHNHPYLSAMVNNGSLHYDH 163
GG G + + V DTY N N + N NH S VN +
Sbjct: 86 ALGGGGGGGGLGYGGIGNSVAVEFDTYKNDDNNDPNGNHI--SIDVNGNGNNTAL 138
>gnl|CDD|173891 cd06903, lectin_EMP46_EMP47, EMP46 and EMP47 type 1 transmembrane
proteins, N-terminal lectin domain. EMP46 and EMP47,
N-terminal carbohydrate recognition domain. EMP46 and
EMP47 are fungal type-I transmembrane proteins that
cycle between the endoplasmic reticulum and the golgi
apparatus and are thought to function as cargo receptors
that transport newly synthesized glycoproteins. EMP47
is a receptor for EMP46 responsible for the selective
transport of EMP46 by forming hetero-oligomerization
between the two proteins. EMP46 and EMP47 have an
N-terminal lectin-like carbohydrate recognition domain
(represented by this alignment model) as well as a
C-terminal transmembrane domain. EMP46 and EMP47 are 45%
sequence-identical to one another and have sequence
homology to a class of intracellular lectins defined by
ERGIC-53 and VIP36. L-type lectins have a dome-shaped
beta-barrel carbohydrate recognition domain with a
curved seven-stranded beta-sheet referred to as the
"front face" and a flat six-stranded beta-sheet referred
to as the "back face". This domain homodimerizes so
that adjacent back sheets form a contiguous 12-stranded
sheet and homotetramers occur by a back-to-back
association of these homodimers. Though L-type lectins
exhibit both sequence and structural similarity to one
another, their carbohydrate binding specificities differ
widely.
Length = 215
Score = 48.1 bits (115), Expect = 1e-06
Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 14/131 (10%)
Query: 44 SIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYM-NNWEVQITLKIHGKGKELFG 102
IP W G S + LT R G++W P+ + + W ++ T + G E
Sbjct: 19 LIPNWQTSGNPKLESGRIILTPPGNQR-GSLWLKKPLSLKDEWTIEWTFR--STGPEGRS 75
Query: 103 DG-MAFWYVRDRMEGGPV--FGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSL 159
G + FW V+D F GL ++ID L +N+GS
Sbjct: 76 GGGLNFWLVKDGNADVGTSSIYGPSKFDGLQLLIDNNGGSG-------GSLRGFLNDGSK 128
Query: 160 HYDHDMDGTHT 170
Y ++ +
Sbjct: 129 DYKNEDVDSLA 139
>gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional
4-alpha-glucanotransferase/glycogen debranching enzyme;
Provisional.
Length = 1221
Score = 33.7 bits (77), Expect = 0.088
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 128 GLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTH 169
G+ VI+D NH GE NH P LSA ++ S +Y +
Sbjct: 260 GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPK 301
Score = 32.9 bits (75), Expect = 0.16
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 172 LAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTH 212
+AVI+D NH GE NH P LSA ++ S +Y +
Sbjct: 261 IAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPK 301
>gnl|CDD|233849 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 825
Score = 33.1 bits (76), Expect = 0.13
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 128 GLGVIIDTYSNHNGEHNHNHPYLSAMVNNG--SLHYDH-DMD 166
GLG+I+D NH H +P+ ++ NG S + ++ D+D
Sbjct: 78 GLGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDID 119
Score = 27.8 bits (62), Expect = 6.9
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 172 LAVIIDTYSNHNGEHNHNHPYLSAMVNNG--SLHYDH-DMD 209
L +I+D NH H +P+ ++ NG S + ++ D+D
Sbjct: 79 LGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDID 119
>gnl|CDD|225819 COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate
transport and metabolism].
Length = 889
Score = 31.7 bits (72), Expect = 0.37
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 128 GLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSL-----HYDHD 164
GLG+I+D NH H +P+ ++ NG ++D D
Sbjct: 81 GLGLIVDIVPNHMAVGGHENPWWWDVLENGRDSAYANYFDID 122
>gnl|CDD|176569 cd08632, PI-PLCc_eta1, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-eta1. This
subfamily corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PI-PLC-eta represents a
class of neuron-speific PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, a C2 domain, and a unique
C-terminal tail that terminates with a PDZ-binding
motif, a potential interaction site for other signaling
proteins. The PLC catalytic core domain is a TIM barrel
with two highly conserved regions (X and Y) split by a
highly degenerate linker sequence. PI-PLC-eta1 is a
neuron-specific enzyme and expressed in only nerve
tissues such as the brain and spinal cord. It may
perform a fundamental role in the brain.
Length = 253
Score = 30.0 bits (67), Expect = 0.97
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 51 HGFALASSNYVRLTADLQSRYGAIWNTVPVYM---NNWEVQITLKIHGKGKELFGDGM 105
HG+ L S R + ++Y + N PV + N+ +Q KI KE+FGD +
Sbjct: 62 HGYTLTSKITFRDVIETINKYAFVKNEFPVILSIENHCSIQQQKKIAQYLKEIFGDKL 119
>gnl|CDD|107314 cd06319, PBP1_ABC_sugar_binding_like_10, Periplasmic
sugar-binding domain of uncharacterized ABC-type
transport systems. Periplasmic sugar-binding domain of
uncharacterized ABC-type transport systems that share
homology with a family of pentose/hexose sugar-binding
proteins of the type I periplasmic binding protein
superfamily, which consists of two domains connected by
a three-stranded hinge. The substrate specificity of
this group is not known, but it is predicted to be
involved in the transport of sugar-containing molecules
and chemotaxis.
Length = 277
Score = 30.1 bits (68), Expect = 1.1
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 15/64 (23%)
Query: 38 YLTSGLSIPYWDVHGFALASS------NYVRLTADLQSRYGAIWNTVPVYMNNWEVQITL 91
Y+ S L IP+W + G + S + V L+A+ N+ + N I
Sbjct: 4 YIVSDLRIPFWQIMGRGVKSKAKALGYDAVELSAE---------NSAKKELENLRTAIDK 54
Query: 92 KIHG 95
+ G
Sbjct: 55 GVSG 58
>gnl|CDD|131155 TIGR02100, glgX_debranch, glycogen debranching enzyme GlgX. This
family consists of the GlgX protein from the E. coli
glycogen operon and probable equivalogs from other
prokaryotic species. GlgX is not required for glycogen
biosynthesis, but instead acts as a debranching enzyme
for glycogen catabolism. This model distinguishes GlgX
from pullanases and other related proteins that also
operate on alpha-1,6-glycosidic linkages. In the wide
band between the trusted and noise cutoffs are
functionally similar enzymes, mostly from plants, that
act similarly but usually are termed isoamylase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 688
Score = 28.9 bits (65), Expect = 3.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 128 GLGVIIDTYSNHNGEHNHNHPYLS 151
G+ VI+D NH E N P LS
Sbjct: 258 GIEVILDVVYNHTAEGNELGPTLS 281
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 27.9 bits (62), Expect = 5.8
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 10 ALIWQVVAQEA---QWNTEDFLKRHHSMVKPYLTSGLSIP 46
A IW +V + Q F HHS KP L G IP
Sbjct: 247 ARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIP 286
>gnl|CDD|191168 pfam05026, DCP2, Dcp2, box A domain. This domain is always found
to the amino terminal side of pfam00293. This domain is
specific to mRNA decapping protein 2 and this region
has been termed Box A. Removal of the cap structure is
catalyzed by the Dcp1-Dcp2 complex.
Length = 85
Score = 26.1 bits (58), Expect = 6.2
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 5 LFTVIALIWQVVAQEAQWNTEDFLK 29
L +V + +Q+ +EA W EDF +
Sbjct: 20 LSSVERVCFQI--EEAHWFYEDFYR 42
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 27.1 bits (61), Expect = 9.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 17/44 (38%)
Query: 109 YVRDRMEGGPVFGNK--DFFSGLGVIIDTYSNHNGEHNHNHPYL 150
Y+ D V GN+ DF SG+GV+ HNHP +
Sbjct: 29 YLYD------VDGNRYLDFLSGIGVLN---------LGHNHPEV 57
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase activity
and may play a role in the transcription of the virus
genome, the unwinding or reannealing of double-stranded
RNA during RNA synthesis. The RTPase activity constitutes
the first step in the capping of RNA, resulting in a
5'-diphosphorylated RNA plus-strand. lambda1 is an
Orthoreovirus core protein, VP3 is the homologous core
protein in Aquareoviruses.
Length = 1166
Score = 27.4 bits (61), Expect = 9.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 162 DHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMV 197
D QL ID Y++ +N +P L+AMV
Sbjct: 1132 DPAYRPGTNQLPARIDLYNSLR-RYNFEYPPLTAMV 1166
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.437
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,313,347
Number of extensions: 1243027
Number of successful extensions: 978
Number of sequences better than 10.0: 1
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 33
Length of query: 257
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 162
Effective length of database: 6,723,972
Effective search space: 1089283464
Effective search space used: 1089283464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)