RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9727
(257 letters)
>2dur_A VIP36;, vesicular integral-membrane protein VIP36; beta sandwich,
carbohydrate binding protein, cargo receptor, transport;
HET: MAN; 1.65A {Canis lupus familiaris} PDB: 2dup_A
2duq_A* 2duo_A* 2e6v_A*
Length = 253
Score = 150 bits (380), Expect = 6e-45
Identities = 89/222 (40%), Positives = 117/222 (52%), Gaps = 46/222 (20%)
Query: 24 TEDFLKRHHSMVKPYLTSGL-SIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYM 82
+ + LKR HS++KPY G S+P WD G + +S YVRLT D +S+ G+IWN P ++
Sbjct: 2 SSEHLKREHSLIKPYQGVGSSSMPLWDFQGSTILTSQYVRLTPDERSKEGSIWNHQPCFL 61
Query: 83 NNWEVQITLKIHGKGKE-LFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNG 141
+WE+ + K+HG GK+ L GDG+A WY RDR+ GPVFG+KD F GL + +DTY N
Sbjct: 62 KDWEMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPN--- 118
Query: 142 EHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGS 201
+ PY+S MVNNGS
Sbjct: 119 -----------------------------------------DETTERVFPYISVMVNNGS 137
Query: 202 LHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVS 243
L YDH DG T+LAGC RN +HDT +A+RY LTV
Sbjct: 138 LSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVM 179
>1gv9_A P58/ergic-53; lectin, carbohydrate binding; 1.46A {Rattus
norvegicus} SCOP: b.29.1.13 PDB: 1r1z_A 3a4u_A 3lcp_A
Length = 260
Score = 143 bits (360), Expect = 6e-42
Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 48/228 (21%)
Query: 16 VAQEAQWNTEDFLKRHHSMVKPYL-TSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAI 74
A + +S P+L S ++P+W G A+ S++ +R+ L+S+ G++
Sbjct: 18 AAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSV 77
Query: 75 WNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIID 134
W NWEV++T ++ G+G+ + DG+A WY ++ GPVFG+ D ++G+G+ D
Sbjct: 78 WTKTKAAFENWEVEVTFRVTGRGR-IGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFD 136
Query: 135 TYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLS 194
++ N N+P +
Sbjct: 137 SFDNDGK----------------------------------------------KNNPAIV 150
Query: 195 AMVNNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTV 242
+ NNG ++YDH DG LA C+ RN + I Y + LTV
Sbjct: 151 VVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTV 198
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.00A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A
2a71_A
Length = 222
Score = 140 bits (354), Expect = 3e-41
Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 59/227 (25%)
Query: 23 NTEDFLKRHHSMVKPYLTSGLSIP-YWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVY 81
+ L +S+ P L + +P W A + LT++ S+ G++W
Sbjct: 2 SDASKLSSDYSL--PDLINTRKVPNNWQTGEQASLEEGRIVLTSNQNSK-GSLWLKQGFD 58
Query: 82 M-NNWEVQITLKIHGKGKELFGDGMAFWYVRDRM--EGGPVFGNKDFFSGLGVIIDTYSN 138
+ +++ ++ T + G G++FW+V+D ++ + GL +++D
Sbjct: 59 LKDSFTMEWTFRSVGYS-GQTDGGISFWFVQDSNIPRDKQLYNGPVNYDGLQLLVDN--- 114
Query: 139 HNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVN 198
+ P L +N+G D +
Sbjct: 115 ----NGPLGPTLRGQLNDGQKPVDKTKIYDQS---------------------------- 142
Query: 199 NGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGV 245
A C ++ + + I + Y+ E+ + V
Sbjct: 143 ----------------FASCLMGYQDSSVPSTIRVTYDLEDDNLLKV 173
>2a6y_A EMP47P (FORM1); beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.42A
{Saccharomyces cerevisiae} SCOP: b.29.1.13
Length = 256
Score = 138 bits (348), Expect = 4e-40
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 57/228 (25%)
Query: 22 WNTEDFLKRHHSMVKPYLTSGLSIP-YWDVHGFALASSNYVRLTADLQSRYGAIWNTVPV 80
+T D K P L + +P W A + LT++ S+ G++W
Sbjct: 6 GDTSDASKLSSDYSLPDLINTRKVPNNWQTGEQASLEEGRIVLTSNQNSK-GSLWLKQGF 64
Query: 81 YM-NNWEVQITLKIHGKGKELFGDGMAFWYVRDRM--EGGPVFGNKDFFSGLGVIIDTYS 137
+ +++ ++ T + G G++FW+V+D ++ + GL +++D
Sbjct: 65 DLKDSFTMEWTFRSVGYS-GQTDGGISFWFVQDSNIPRDKQLYNGPVNYDGLQLLVDN-- 121
Query: 138 NHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMV 197
+ P L +N+G D +
Sbjct: 122 -----NGPLGPTLRGQLNDGQKPVDKTKIYDQS--------------------------- 149
Query: 198 NNGSLHYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGV 245
A C ++ + + I + Y+ E+ + V
Sbjct: 150 -----------------FASCLMGYQDSSVPSTIRVTYDLEDDNLLKV 180
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo
receptor, structural genomics, NPPSFA; 1.52A
{Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A
2a6x_A
Length = 226
Score = 135 bits (342), Expect = 2e-39
Identities = 23/223 (10%), Positives = 60/223 (26%), Gaps = 60/223 (26%)
Query: 28 LKRHHSM--VKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQSRYGAIWNTVPVYM-NN 84
+ +S+ + + W + LT ++ G++W + +
Sbjct: 7 WNKGYSLPNLLEVTDQQKELSQWTLGDKVKLEEGRFVLTPG-KNTKGSLWLKPEYSIKDA 65
Query: 85 WEVQITLKIHGKGKELFGDGMAFWYVRDRM--EGGPVFGNKDFFSGLGVIIDTYSNHNGE 142
++ T + G G+AFW + G+ F+GL +++
Sbjct: 66 MTIEWTFRSFGFRGST-KGGLAFWLKQGNEGDSTELFGGSSKKFNGLMILLRLDD----- 119
Query: 143 HNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSL 202
++A +N+G+ D +
Sbjct: 120 --KLGESVTAYLNDGTKDLDIESS------------------------------------ 141
Query: 203 HYDHDMDGTHTQLAGCECKLRNLNHDTHIAIRYEDENLTVSGV 245
A C + ++ + + + Y + + +
Sbjct: 142 ----------PYFASCLFQYQDSMVPSTLRLTYNPLDNHLLKL 174
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO
(hydrolase-inhibitor), complex (hydrolase-inhibitor)
comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP:
b.29.1.1 PDB: 1viw_B*
Length = 223
Score = 50.5 bits (120), Expect = 1e-07
Identities = 15/141 (10%), Positives = 44/141 (31%), Gaps = 21/141 (14%)
Query: 54 ALASSNYVRLTADLQSRYG--------AIWNTVPVYMNNWEVQITLKIHGKGKELFGDGM 105
++S+ ++L+ + I ++ + +++ T+ I + G+
Sbjct: 23 TVSSNGNLQLSYNSYDSMSRAFYSAPIQIRDSTTGNVASFDTNFTMNIRTHRQANSAVGL 82
Query: 106 AFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNH-----NGEHNHNHPYLSAMVNNGSLH 160
F V + + + V DT+ + N + P+ + +
Sbjct: 83 DFVLVPVQ--------PESKGDTVTVEFDTFLSRISIDVNNNDIKSVPWDVHDYDGQNAE 134
Query: 161 YDHDMDGTHTQLAVIIDTYSN 181
+ + +V + S
Sbjct: 135 VRITYNSSTKVFSVSLSNPST 155
>2bqp_A Protein (PEA lectin); D-glucopyranose complex, sugar binding
protein; HET: GLC; 1.90A {Pisum sativum} SCOP: b.29.1.1
Length = 234
Score = 47.5 bits (112), Expect = 9e-07
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 32/178 (17%)
Query: 52 GFALASSNYVRLTADLQSRYGAIWNTVPV--------YMNNWEVQITLKIHGKGKELFGD 103
G + + LT +++ G + P+ + N+ T I+ D
Sbjct: 22 GDGYTTKEKLTLTKAVKNTVGRALYSSPIHIWDRETGNVANFVTSFTFVINAPNSYNVAD 81
Query: 104 GMAFWYVRDRMEGGPVFGNKDFFSG---------LGVIIDTYSNHNGEHNHNHPYLSAMV 154
G F+ + G F+ + V DT+ N + ++ ++ V
Sbjct: 82 GFTFFIAPVDTKPQTGGGYLGVFNSAEYDKTTQTVAVEFDTFYNAAWDPSNRDRHIGIDV 141
Query: 155 N-------------NGSLHYDH-DMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVN 198
N NG + L V + TY N++ E LS +V+
Sbjct: 142 NSIKSVNTKSWKLQNGEEANVVIAFNAATNVLTVSL-TYPNNSLEEEVTSYTLSDVVS 198
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.073
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 20/50 (40%)
Query: 19 EAQWNTEDFLKRHHSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQ 68
E Q LK+ + +K Y S P ALA + A ++
Sbjct: 18 EKQ---A--LKKLQASLKLYADD--SAP-------ALA------IKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.10
Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 59/238 (24%)
Query: 3 KILFTVIALIW-QVVAQEAQWNTEDFLKRHHSMVKPYLTSG-LSIPYWDVH-GFALASSN 59
I +++LIW V+ + K S+V+ +SIP ++ + N
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISIP--SIYLELKVKLEN 441
Query: 60 YVRLTADLQSRYGAI-----WNTVPVYMNNWEVQITLKI--HGKGKELFGDGMAF--WYV 110
L + Y + +P Y++ + I H K E F ++
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 111 RD--------RMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYD 162
D R + + + L + Y + + N P +VN
Sbjct: 499 -DFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICD---NDPKYERLVNA------ 547
Query: 163 HDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLS----AMVNNGSLHYDHDMDGTHTQLA 216
I+D E+ Y A++ ++ H Q+
Sbjct: 548 ------------ILDFLPKI-EENLICSKYTDLLRIALMAEDEAIFEE----AHKQVQ 588
Score = 30.2 bits (67), Expect = 0.76
Identities = 39/267 (14%), Positives = 78/267 (29%), Gaps = 60/267 (22%)
Query: 27 FLKRHHSMVKPYLTSGLSIPY-WDVHGFALASSNYVRLTADLQSRYGAIWNTVPVY--MN 83
L + MV+ ++ L I Y + + +T + ++N V+ N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 84 NWEVQITLKIHGKGKEL------FGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYS 137
+Q LK+ EL DG+ G G K + + +D
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGV----------LG--SG-K---TWV--ALDVCL 172
Query: 138 NHNGEHNHNHP--YLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSA 195
++ + + +L+ + + + +L ID +H+ N
Sbjct: 173 SYKVQCKMDFKIFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 196 MVNNGSLHY-------------DHDMDGTHTQLAGCECKL----RNLN--------HDTH 230
+ + + CK+ R TH
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 231 IAIRYEDENLTVSGVNDLLSKGPFINL 257
I++ + LT V LL K +++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLK--YLDC 313
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly
roll, sugar binding protein; 1.81A {Robinia
pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A*
Length = 237
Score = 30.5 bits (68), Expect = 0.37
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 19/142 (13%)
Query: 74 IWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRM------EGGPVFGNKDFFS 127
IW++ + ++ T I DG+AF+ +F + F
Sbjct: 58 IWDSTTGNVASFVTSFTFIIQAPNPATTADGLAFFLAPVDTQPLDLGGMLGIFKDGYFNK 117
Query: 128 G---LGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHN- 183
+ V DT+SN + + H + VN+ + T+ ++A + +Y
Sbjct: 118 SNQIVAVEFDTFSNGDWDPKGRHLGI--NVNSIESIKTVPWNWTNGEVANVFISYEASTK 175
Query: 184 -------GEHNHNHPYLSAMVN 198
+ A+V+
Sbjct: 176 SLTASLVYPSLETSFIIDAIVD 197
>1g7y_A Stem/LEAF lectin DB58; jelly roll fold, sugar binding protein; HET:
NAG FUC FUL; 2.50A {Vigna unguiculata subsp} SCOP:
b.29.1.1 PDB: 1lul_A 1lu1_A* 1bjq_A* 1lu2_A*
Length = 253
Score = 30.9 bits (69), Expect = 0.37
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 23/119 (19%)
Query: 52 GFALASSNYVRLTADLQSRYGA--------------IWNTVPVYMNNWEVQITLKIHGKG 97
G A SS+ +RLT + I++ + +W T I
Sbjct: 20 GDATVSSSKLRLTKVKGNGLPTLSSLGRAFYSSPIQIYDKSTGAVASWATSFTANIFAPN 79
Query: 98 KELFGDGMAFWYVRDRME-----GGPVFGNKDFFSG----LGVIIDTYSNHNGEHNHNH 147
K DG+AF V E G + D + + V DT+SN + + H
Sbjct: 80 KSSSADGIAFALVPVGSEPKSNSGFLGVFDSDVYDNSAQTVAVEFDTFSNTDWDPTSRH 138
>1fat_A Phytohemagglutinin-L; glycoprotein, plant defense protein, lectin;
HET: NAG; 2.80A {Phaseolus vulgaris} SCOP: b.29.1.1 PDB:
1g8w_A*
Length = 252
Score = 30.5 bits (68), Expect = 0.40
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 19/145 (13%)
Query: 74 IWNTVPVYMNNWEVQITLKIHGKGKELFGDGMAFWYVRDRMEG-------GPVFGNKDFF 126
IW+ + ++ T I DG+AF V + G G+ F
Sbjct: 57 IWDNTTGTVASFATSFTFNIQVPNNAGPADGLAFALVPVGSQPKDKGGFLGLFDGSNSNF 116
Query: 127 SGLGVIIDTYSNHNGEHNHNH-----------PYLSAMVNNGSLHYDH-DMDGTHTQLAV 174
+ V DT N + + H NG D + L
Sbjct: 117 HTVAVEFDTLYNKDWDPTERHIGIDVNSIRSIKTTRWDFVNGENAEVLITYDSSTNLLVA 176
Query: 175 IIDTYSNHNGEHNHNHPYLSAMVNN 199
+ S + L +++
Sbjct: 177 SLVYPSQKTSFIVSDTVDLKSVLPE 201
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 29.8 bits (67), Expect = 0.85
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 118 PVFGNKDFFS---------GLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHDMDGT 168
P +G+ + F G+G+I D +H G +H ++ + ++Y T
Sbjct: 193 PRYGSNEDFVRLSTEARKRGMGLIQDVVLSHIG---KHHWWMKDLPTPDWINYGGKFVPT 249
Query: 169 HTQLAVIIDTYSNHNGEHNHN 189
+ D Y+ N
Sbjct: 250 QHHRVAVQDPYAAQADSENFT 270
>1ioa_A Arcelin-5A, ARC5A; lectin-like proteins, plant defense proteins,
lectin; HET: NAG FUC; 2.70A {Phaseolus vulgaris} SCOP:
b.29.1.1
Length = 240
Score = 28.2 bits (62), Expect = 2.6
Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 52/177 (29%)
Query: 57 SSNYVRLTADLQ------SRYGAIWNTVPVYM------NNWEVQITLKIHGKGKELFGDG 104
S ++LT G + + P+ + ++ T I K + + G
Sbjct: 27 SKGQLQLTGVGSNELPRVDSLGRAFYSDPIQIKDSNNVASFNTNFTFIIRAKNQSISAYG 86
Query: 105 MAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHYDHD 164
+AF V F+ ++
Sbjct: 87 LAFALVPVNSPPQKKQEFLGIFNT----------------------------------NN 112
Query: 165 MDGTHTQLAVIIDTYSNHNG-EHNHNHPYLSAMVN----NGSLHYDH-DMDGTHTQL 215
+ +AV+ +T+ N + N PY++ + NG D ++ L
Sbjct: 113 PEPNARTVAVVFNTFKNRIDFDKNFIKPYVNENCDFHKYNGEKTDVQITYDSSNNDL 169
>1l7l_A PA-I galactophilic lectin; agglutinin, single wavelength anomalous
scattering phasing, structural genomics, PSI; 1.50A
{Pseudomonas aeruginosa} SCOP: b.18.1.16 PDB: 1oko_A*
1uoj_A 2vxj_A* 2wyf_A* 3zyh_A* 3zyb_A* 3zyf_A*
Length = 121
Score = 26.8 bits (58), Expect = 3.8
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 18/108 (16%)
Query: 48 WDVHGFALASSNYVRLTADLQSRYGAIWNTVP-----------VYMNNWEVQITLKIHGK 96
V + + + A + YG P + + + + +KI
Sbjct: 13 GQVTSIIYNPGDVITIVAAGWASYGPTQKWGPQGDREHPDQGLICHDAFCGALVMKIGNS 72
Query: 97 GKELFGDGMAFWYVRDRMEGGPVFGNKDFFSGLGVIIDTYSNHNGEHN 144
G G+ W + ++G D + TY N++G +
Sbjct: 73 GTIPVNTGLFRWVAPNNVQGAITLIYND-------VPGTYGNNSGSFS 113
>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase,
glycosidase, ISO-amylase glycosyl hydrolase, glycogen
metabolism; 2.25A {Escherichia coli k-12}
Length = 657
Score = 27.6 bits (62), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 128 GLGVIIDTYSNHNGEHNHNHPYLS 151
G+ VI+D NH+ E + + P S
Sbjct: 255 GIEVILDIVLNHSAELDLDGPLFS 278
>1njk_A Hypothetical protein YBAW; structural genomics, thioesterase, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.90A {Escherichia coli}
SCOP: d.38.1.1
Length = 156
Score = 26.9 bits (60), Expect = 5.2
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 212 HTQLAGCECKLRNLNHDTHIAIRYED 237
H +G E + T I +R
Sbjct: 8 HHHSSGRENLYFQGHMQTQIKVRGYH 33
>1vhx_A Putative holliday junction resolvase; structural genomics,
hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Length = 150
Score = 26.4 bits (59), Expect = 6.0
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 207 DMDGTHTQLA-GCECKLRNLNHDTHIAIRYEDENLTVSGVNDLLSK 251
+M+GT + + L ++ + DE LT +L
Sbjct: 66 NMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKMLIA 111
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 27.3 bits (61), Expect = 6.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 128 GLGVIIDTYSNHNGEHNHNHPYLS 151
G+ VIID NH E NH P LS
Sbjct: 280 GIEVIIDVVYNHTAEGNHLGPTLS 303
>2b5g_A Diamine acetyltransferase 1; structural genomics, PSI, protein
structure initiative, NEW research center for structural
genomics, nysgxrc; HET: ALY; 1.70A {Homo sapiens} SCOP:
d.108.1.1 PDB: 2b4d_A* 2jev_A* 2g3t_A 2f5i_A 2b3u_A
2b3v_A* 2b4b_A* 2b58_A* 2fxf_A* 3bj7_A* 3bj8_A*
Length = 171
Score = 26.4 bits (58), Expect = 7.9
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 20/93 (21%)
Query: 17 AQEAQWNTEDFLKRH--------HSMVKPYLTSGLSIPYWDVHGFALASSNYVRLTADLQ 68
+E TE L H +V + + GFA+ Y
Sbjct: 30 MEEQVILTEKDLLEDGFGEHPFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTY-------- 81
Query: 69 SRYGAIWNTVPVYMNNWEVQITLKIHGKGKELF 101
W +Y+ ++ V + G G E+
Sbjct: 82 ----DPWIGKLLYLEDFFVMSDYRGFGIGSEIL 110
>1gzc_A Erythrina crista-galli lectin; carbohydrate, sugar binding protein,
saccharide, protein-carbohydrate interactions, lactose,
glycoprotein; HET: LAT; 1.58A {Erythrina crista-galli}
SCOP: b.29.1.1 PDB: 1gz9_A* 1fyu_A* 1ax0_A* 1ax1_A*
1ax2_A* 1axy_A* 1axz_A* 1lte_A* 1sfy_A* 1v00_A* 1uzz_A
1uzy_A* 3n35_A* 3n36_A* 3n3h_A*
Length = 239
Score = 26.7 bits (58), Expect = 8.2
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 156 NGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNH 190
+ + D ++ LAV DT+SN H
Sbjct: 108 YLGVFNNSKQDNSYQTLAVEFDTFSNPWDPPQVPH 142
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP:
b.42.5.2 PDB: 1hce_A
Length = 118
Score = 25.8 bits (56), Expect = 8.6
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 145 HNHPYLSAMVNNGSLHYDHDMDGTHTQLAVIIDTYSNHNGEHNHNHPYLSAMVNNGSLHY 204
H+ +LSA H+ H TH ++ + H YLS ++ ++
Sbjct: 9 HHGHFLSAEGEAVKTHHGHHDHHTH----FHVENHGGKVALKTHCGKYLSI-GDHKQVYL 63
Query: 205 DHDMDGTH 212
H + G H
Sbjct: 64 SHHLHGDH 71
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris
CGA009} PDB: 3lag_A*
Length = 98
Score = 25.2 bits (55), Expect = 10.0
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 7/58 (12%)
Query: 141 GEHNHNHPYLSAMVNNGSLHYDHDMDGTHTQL------AVIIDTYSNHNGEHNHNHPY 192
G H H Y+ + +G + DGT + + H+ +
Sbjct: 31 GHHTHGMDYVVVPMADGEMTIVAP-DGTRSLAQLKTGRSYARKAGVQHDVRNESTAEI 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.437
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,293,129
Number of extensions: 259159
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 588
Number of HSP's successfully gapped: 50
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)