BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy973
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
           Pyrococcus Horikoshii Complexed With
           Asparaginyl-adenylate
 pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
           Pyrococcus Horikoshii Complexed With
           Asparaginyl-Adenylate Analogue
 pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
           Pyrococcus Horikoshii
          Length = 434

 Score = 27.3 bits (59), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 7   DDRDLCLHKLLESGADVKQLEICLDDYCSGGSTSATGIGDG-----DYTTALDNLDCESD 61
           DD D  L+++LE G D K  E  L D    GS   +G G G      +   LD++   + 
Sbjct: 366 DDYDKLLNRILEEGMDPKDYEWYL-DLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAAL 424

Query: 62  F 62
           F
Sbjct: 425 F 425


>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
           Sti1 From Homo Sapiens, Northeast Structural Genomics
           Consortium Target Hr4403e
          Length = 133

 Score = 26.9 bits (58), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 6   YDDRDLCLHKLLESGADVKQLEICLD---DYCSGGSTSATGI-GDGDYTTALDNLDCESD 61
           Y +R  C  KLLE    +K  E C+     +  G +  A  +    DYT A+D      D
Sbjct: 53  YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112

Query: 62  FDS 64
            DS
Sbjct: 113 LDS 115


>pdb|4AT0|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
           Dehydrogenase From Rhodococcus Jostii Rha1
 pdb|4AT2|A Chain A, The Crystal Structure Of 3-Ketosteroid-Delta4-(5alpha)-
           Dehydrogenase From Rhodococcus Jostii Rha1 In Complex
           With 4-Androstene-3,17- Dione
          Length = 510

 Score = 26.6 bits (57), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 29  CLDDYCSGGSTSATGIGDGDY 49
           C    C+GG  S T +GDG +
Sbjct: 477 CTSGVCAGGYASGTSLGDGSF 497


>pdb|2VSV|A Chain A, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
 pdb|2VSV|B Chain B, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
          Length = 109

 Score = 26.2 bits (56), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 30 LDDYCSGGSTSATGIGDGDYTTALDNLDCE 59
          LD YCS    S  G  +GDY  ++  +DC+
Sbjct: 51 LDPYCSA---SVAGAREGDYIVSIQLVDCK 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,991,897
Number of Sequences: 62578
Number of extensions: 119940
Number of successful extensions: 222
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 7
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)