Query psy973
Match_columns 167
No_of_seqs 33 out of 35
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 18:05:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k35_A Hydramacin-1; antimicro 42.7 3.2 0.00011 28.8 -1.0 21 25-45 1-23 (60)
2 2cov_D Beta-1,3-xylanase; carb 34.7 4.9 0.00017 30.3 -1.2 13 27-39 38-50 (104)
3 1wxm_A A-RAF proto-oncogene se 32.9 27 0.00091 25.3 2.4 27 137-163 47-75 (86)
4 2efv_A Hypothetical protein MJ 25.9 21 0.00071 26.3 0.8 20 92-111 19-38 (92)
5 2ln8_A Theromacin; antimicrobi 24.0 26 0.00088 25.1 1.0 13 33-45 8-20 (75)
6 2d9i_A NEDD4-binding protein 2 18.7 68 0.0023 21.4 2.2 36 103-141 13-48 (96)
7 2l05_A Serine/threonine-protei 18.5 40 0.0014 24.8 1.1 27 137-163 57-85 (95)
8 2yb5_A FUSC, putative fusidic 18.3 70 0.0024 26.0 2.6 55 100-154 57-118 (215)
9 2pxg_A Outer membrane protein; 16.1 72 0.0025 22.9 2.0 32 135-166 68-99 (118)
10 3ny5_A Serine/threonine-protei 15.4 45 0.0015 24.5 0.7 27 137-163 53-81 (96)
No 1
>2k35_A Hydramacin-1; antimicrobial protein; NMR {Hydra}
Probab=42.66 E-value=3.2 Score=28.78 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.5
Q ss_pred hhhhhhccc--cCCCCccccccC
Q psy973 25 QLEICLDDY--CSGGSTSATGIG 45 (167)
Q Consensus 25 ~~~~~~~~~--~~~~~~~~~~~~ 45 (167)
||+-|+++. ||+++...|||=
T Consensus 1 ~l~~C~e~wsRCs~~ss~~Tgil 23 (60)
T 2k35_A 1 QIVDCWETWSRCTKWSQGGTGTL 23 (60)
T ss_dssp CCSCCBSSHHHHHHCCTTTTCSC
T ss_pred CccchhhhhhhcChhhhcccccc
Confidence 677788875 999999999983
No 2
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=34.68 E-value=4.9 Score=30.34 Aligned_cols=13 Identities=46% Similarity=1.178 Sum_probs=10.2
Q ss_pred hhhhccccCCCCc
Q psy973 27 EICLDDYCSGGST 39 (167)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (167)
-+||||||-.|.-
T Consensus 38 Y~CLd~yCl~g~k 50 (104)
T 2cov_D 38 YVCLNDYCLPGNK 50 (104)
T ss_dssp EEEETTEEEECEE
T ss_pred EEEecCeeccccc
Confidence 4799999977643
No 3
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.89 E-value=27 Score=25.26 Aligned_cols=27 Identities=37% Similarity=0.636 Sum_probs=22.5
Q ss_pred eeEEEEecCC--CccccCCCCCCCCcchh
Q psy973 137 ECHVVVLLDD--DTVDWDEAYPPQMGEEY 163 (167)
Q Consensus 137 ECHIVVL~Dd--D~VDWDEeyPPqmGEE~ 163 (167)
-|.|-++.+. ..|+||.+--+-.|||.
T Consensus 47 ~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL 75 (86)
T 1wxm_A 47 CCVVYRLIKGRKTVTAWDTAIAPLDGEEL 75 (86)
T ss_dssp SEEEEEESSSCEEEECSSSBSTTCSSCEE
T ss_pred HeEEEEcCCCCccccchhHhhhhccCcEE
Confidence 4888888766 88999999988888875
No 4
>2efv_A Hypothetical protein MJ0366; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Methanocaldococcus jannaschii DSM2661} SCOP: a.43.1.12
Probab=25.87 E-value=21 Score=26.30 Aligned_cols=20 Identities=30% Similarity=0.160 Sum_probs=16.8
Q ss_pred CceeecchHHHHHHhhccch
Q psy973 92 PMTRVAYLGGLLHELSNEGA 111 (167)
Q Consensus 92 ~TVkCqNLr~LLHELSNeGA 111 (167)
..|.+..||++||+|-|.+.
T Consensus 19 k~Id~r~lRY~LHKLen~~~ 38 (92)
T 2efv_A 19 KNIDGRKLRYLLHKLENVEN 38 (92)
T ss_dssp SCCCHHHHHHHHHHGGGCCC
T ss_pred ecCcHHHHHHHHHHHccCCC
Confidence 35778899999999999874
No 5
>2ln8_A Theromacin; antimicrobial peptide, antimicrobial protein; NMR {Hirudo medicinalis}
Probab=24.00 E-value=26 Score=25.12 Aligned_cols=13 Identities=46% Similarity=0.646 Sum_probs=11.4
Q ss_pred ccCCCCccccccC
Q psy973 33 YCSGGSTSATGIG 45 (167)
Q Consensus 33 ~~~~~~~~~~~~~ 45 (167)
-|+++|.++|||=
T Consensus 8 RCt~wss~~TGvL 20 (75)
T 2ln8_A 8 RCSPSTASATGVL 20 (75)
T ss_dssp TSSCSCCCCCTTT
T ss_pred hcCCcccccceee
Confidence 4999999999984
No 6
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=18.71 E-value=68 Score=21.45 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHhhhccCCceeEEE
Q psy973 103 LHELSNEGARCQFEVFLEDLILPLMVNSAQRGDRECHVV 141 (167)
Q Consensus 103 LHELSNeGAr~QFe~FLEelILPlMV~~AqrGeRECHIV 141 (167)
||-|.-+-|+...+.||.+.+...+ .+.|-|...||
T Consensus 13 LHGl~v~eA~~~L~~~L~~~~~~~~---~~~g~~~v~II 48 (96)
T 2d9i_A 13 LHGLHVDEALEHLMRVLEKKTEEFK---QNGGKPYLSVI 48 (96)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH---HTTCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH---hhCCCeEEEEE
Confidence 5777888999999999998764322 23566665555
No 7
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=18.46 E-value=40 Score=24.81 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=21.6
Q ss_pred eeEEEEecC--CCccccCCCCCCCCcchh
Q psy973 137 ECHVVVLLD--DDTVDWDEAYPPQMGEEY 163 (167)
Q Consensus 137 ECHIVVL~D--dD~VDWDEeyPPqmGEE~ 163 (167)
-|-|-++.+ +..||||.+--+-.|||.
T Consensus 57 ~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL 85 (95)
T 2l05_A 57 CCAVYRIQDGEKKPIGWDTDISWLTGEEL 85 (95)
T ss_dssp GEEEEEEETTEEEEECTTSBGGGGTTCEE
T ss_pred HcEEEEcCCCCccccchhHhhhhccCcEE
Confidence 477888866 489999999888777775
No 8
>2yb5_A FUSC, putative fusidic acid resistance protein; translation, antibiotic resistance, zinc finger; 2.10A {Staphylococcus aureus}
Probab=18.34 E-value=70 Score=25.98 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHHHhhccc-hHHHHHHHHHHHHHHHH--HhhhccCC----ceeEEEEecCCCccccCCC
Q psy973 100 GGLLHELSNEG-ARCQFEVFLEDLILPLM--VNSAQRGD----RECHVVVLLDDDTVDWDEA 154 (167)
Q Consensus 100 r~LLHELSNeG-Ar~QFe~FLEelILPlM--V~~AqrGe----RECHIVVL~DdD~VDWDEe 154 (167)
..||+++.+.- -+.||+.||+++--+.. -...+..- +...=+-++|-+.+||++-
T Consensus 57 ~~lL~~i~~~~l~~~~~e~~L~~Lk~yV~pm~~lTe~qIrk~F~KaKkLklPdl~~~dw~~l 118 (215)
T 2yb5_A 57 SDFITSIDDVKLTKKKAEHLLNELKVYIQDFEIPSSSQLEKIFRKVKKLKRPDINLIDTKEI 118 (215)
T ss_dssp TTHHHHHCCTTCCHHHHHHHHHHHGGGBCCCCCCCHHHHHHHTTTCSSCCCCCGGGCCTTSC
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhccCCCCCHHHHHHHhhhHHhcCCCCcccCCcccC
Confidence 46889999998 99999999998743211 10000000 0133356777778999864
No 9
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=16.08 E-value=72 Score=22.91 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=24.1
Q ss_pred CceeEEEEecCCCccccCCCCCCCCcchhccC
Q psy973 135 DRECHVVVLLDDDTVDWDEAYPPQMGEEYSQS 166 (167)
Q Consensus 135 eRECHIVVL~DdD~VDWDEeyPPqmGEE~sQi 166 (167)
++.+-+|...++-++.|..+|.|...|+.+++
T Consensus 68 ~~~~l~V~Fd~g~V~~i~~~~~~~~~~~~~~~ 99 (118)
T 2pxg_A 68 EIKNFTVFFENEQVVRWEGDYFPSQDEQLAKA 99 (118)
T ss_dssp EEEEEEEEESSSSEEEEEECSSSCCCCCSSCS
T ss_pred eEEEEEEEEeCCEEEEEEcCcCCCchHHHHhh
Confidence 55666666677778899999999877776654
No 10
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=15.40 E-value=45 Score=24.52 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=21.0
Q ss_pred eeEEEEecC--CCccccCCCCCCCCcchh
Q psy973 137 ECHVVVLLD--DDTVDWDEAYPPQMGEEY 163 (167)
Q Consensus 137 ECHIVVL~D--dD~VDWDEeyPPqmGEE~ 163 (167)
-|-|.++.+ ...|+||.+--.-.|||.
T Consensus 53 ~C~Vy~~~~~~~~~I~WdtDi~~L~geEL 81 (96)
T 3ny5_A 53 CCAVYRIQDGEKKPIGWDTDISWLTGEEL 81 (96)
T ss_dssp GEEEEECC---CEEECTTBBGGGGTTCEE
T ss_pred HeEEEEccCCCcCcccccccchhcccceE
Confidence 477777865 788999999888778875
Done!