Query psy973
Match_columns 167
No_of_seqs 33 out of 35
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 18:05:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy973.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/973hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efva1 a.43.1.12 (A:6-87) Unc 33.3 6.1 0.00044 27.0 0.8 19 93-111 15-33 (82)
2 d1ftpa_ b.60.1.2 (A:) Fatty ac 20.7 30 0.0022 23.2 2.6 44 114-157 16-59 (133)
3 d2f1la1 b.41.1.4 (A:101-175) 1 18.0 17 0.0012 22.3 0.7 8 148-155 68-75 (75)
4 d1b0na1 a.34.1.1 (A:74-108) Si 17.6 27 0.002 20.4 1.5 19 102-120 8-27 (35)
5 d1s9ua_ a.184.1.1 (A:) Putativ 17.1 44 0.0032 23.3 2.9 29 100-128 135-163 (207)
6 d2bwba1 a.5.2.1 (A:328-371) DS 16.3 37 0.0027 20.1 2.0 22 4-25 15-36 (44)
7 d1qasa1 a.39.1.7 (A:205-298) P 15.4 57 0.0042 20.0 2.9 24 98-121 9-35 (94)
8 d1w25a3 d.58.29.2 (A:294-455) 15.1 84 0.0061 19.5 3.7 34 106-144 1-34 (162)
9 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 14.6 40 0.0029 20.5 1.8 22 4-25 18-39 (50)
10 d2ik8b1 a.91.1.1 (B:65-180) Re 14.1 38 0.0028 20.8 1.7 16 106-121 6-21 (116)
No 1
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=33.32 E-value=6.1 Score=26.95 Aligned_cols=19 Identities=32% Similarity=0.179 Sum_probs=16.7
Q ss_pred ceeecchHHHHHHhhccch
Q psy973 93 MTRVAYLGGLLHELSNEGA 111 (167)
Q Consensus 93 TVkCqNLr~LLHELSNeGA 111 (167)
.|.+..+|++||+|-|.+.
T Consensus 15 ~id~r~lRy~LHklenl~~ 33 (82)
T d2efva1 15 NIDGRKLRYLLHKLENVEN 33 (82)
T ss_dssp CCCHHHHHHHHHHGGGCCC
T ss_pred cCCHHHHHHHHHHHhccCC
Confidence 4778899999999999875
No 2
>d1ftpa_ b.60.1.2 (A:) Fatty acid-binding protein {Desert locust (Schistocerca gregaria) [TaxId: 7010]}
Probab=20.65 E-value=30 Score=23.21 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCceeEEEEecCCCccccCCCCCC
Q psy973 114 QFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEAYPP 157 (167)
Q Consensus 114 QFe~FLEelILPlMV~~AqrGeRECHIVVL~DdD~VDWDEeyPP 157 (167)
-|+.||+++=+|.+..-+..--+....|...|.|.+.|--.-|.
T Consensus 16 Nfe~~Lk~lGv~~~~rk~~~~~~p~~~i~~~dGd~~tikt~t~~ 59 (133)
T d1ftpa_ 16 NFEEYMKAIGVGAIERKAGLALSPVIELEILDGDKFKLTSKTAI 59 (133)
T ss_dssp SHHHHHHHTTCCHHHHHHHTTCCCEEEEEECSSSEEEEEEECSS
T ss_pred CHHHHHHHhCCCHHHHHHHhccCCcEEEEEeCCCEEEEEEecCC
Confidence 48999999988888877777666666665667788777654443
No 3
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.00 E-value=17 Score=22.34 Aligned_cols=8 Identities=50% Similarity=1.315 Sum_probs=5.0
Q ss_pred ccccCCCC
Q psy973 148 TVDWDEAY 155 (167)
Q Consensus 148 ~VDWDEey 155 (167)
+|||+++|
T Consensus 68 ~Vdw~~d~ 75 (75)
T d2f1la1 68 RVDWDADF 75 (75)
T ss_dssp EECCCTTC
T ss_pred EEeCCCCC
Confidence 35777665
No 4
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=17.58 E-value=27 Score=20.45 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=12.3
Q ss_pred HHHHhhccc-hHHHHHHHHH
Q psy973 102 LLHELSNEG-ARCQFEVFLE 120 (167)
Q Consensus 102 LLHELSNeG-Ar~QFe~FLE 120 (167)
|..|--+-| .+.||..||+
T Consensus 8 lVkeAM~SGvSK~QFrEfle 27 (35)
T d1b0na1 8 LVRDAMTSGVSKKQFREFLD 27 (35)
T ss_dssp HHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 334433444 5789999997
No 5
>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic dehydrogenases YnfI {Salmonella typhimurium [TaxId: 90371]}
Probab=17.12 E-value=44 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=23.3
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHH
Q psy973 100 GGLLHELSNEGARCQFEVFLEDLILPLMV 128 (167)
Q Consensus 100 r~LLHELSNeGAr~QFe~FLEelILPlMV 128 (167)
-.||+.|....+...-..||+++++|-.=
T Consensus 135 Lefma~L~~~~~~~~~~~fl~~hl~~W~~ 163 (207)
T d1s9ua_ 135 LLLAAWLAENDRHHECEQLLAWHLFPWSS 163 (207)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 35778888888888889999999987543
No 6
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.30 E-value=37 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.0
Q ss_pred CCCcchhhHHHHHHhhCcCcch
Q psy973 4 LSYDDRDLCLHKLLESGADVKQ 25 (167)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (167)
+-|.|++.|+..|..+|-||..
T Consensus 15 MGF~d~~~Ni~AL~~t~GdV~~ 36 (44)
T d2bwba1 15 MGFFDFDRNVAALRRSGGSVQG 36 (44)
T ss_dssp TTCCCHHHHHHHHHHHTTCHHH
T ss_pred cCCCcHHHHHHHHHHcCCCHHH
Confidence 4688999999999999999853
No 7
>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.43 E-value=57 Score=20.03 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=14.2
Q ss_pred chHHHHHHhhccc---hHHHHHHHHHH
Q psy973 98 YLGGLLHELSNEG---ARCQFEVFLED 121 (167)
Q Consensus 98 NLr~LLHELSNeG---Ar~QFe~FLEe 121 (167)
++..+..+.|+.+ ...+|..||++
T Consensus 9 ei~~if~~ys~~~~~mt~~~f~~FL~~ 35 (94)
T d1qasa1 9 EIDRAFEEAAGSAETLSVERLVTFLQH 35 (94)
T ss_dssp HHHHHHHHHHTTSSSCBHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 4555666666654 34666666654
No 8
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=15.11 E-value=84 Score=19.46 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.7
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhhhccCCceeEEEEec
Q psy973 106 LSNEGARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLL 144 (167)
Q Consensus 106 LSNeGAr~QFe~FLEelILPlMV~~AqrGeRECHIVVL~ 144 (167)
|....+|..|+..|+..| .-+++..+.+-|+++.
T Consensus 1 LTGL~Nr~~f~~~l~~~l-----~~~~~~~~~~~l~~i~ 34 (162)
T d1w25a3 1 LTGLHNRRYMTGQLDSLV-----KRATLGGDPVSALLID 34 (162)
T ss_dssp TTCCBCHHHHHHHHHHHH-----HHHHTSSCCCEEEEEE
T ss_pred CCCchHHHHHHHHHHHHH-----HHHHhcCCCEEEEEec
Confidence 566788999999998875 3455666777777663
No 9
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.63 E-value=40 Score=20.50 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=18.6
Q ss_pred CCCcchhhHHHHHHhhCcCcch
Q psy973 4 LSYDDRDLCLHKLLESGADVKQ 25 (167)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (167)
+-|.|++.|+..|..+|-||..
T Consensus 18 MGF~d~~~Ni~AL~~t~GdV~~ 39 (50)
T d2dnaa1 18 MGFVNYNANLQALIATDGDTNA 39 (50)
T ss_dssp HTCCCHHHHHHHHHHTTSCHHH
T ss_pred cCCCCHHHHHHHHHHcCCCHHH
Confidence 3578999999999999999853
No 10
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.12 E-value=38 Score=20.77 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=12.8
Q ss_pred hhccchHHHHHHHHHH
Q psy973 106 LSNEGARCQFEVFLED 121 (167)
Q Consensus 106 LSNeGAr~QFe~FLEe 121 (167)
|+|..++..|..||+.
T Consensus 6 L~d~~~~~~F~~FL~~ 21 (116)
T d2ik8b1 6 LSSKNGVAAFHAFLKT 21 (116)
T ss_dssp HHSHHHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHhH
Confidence 5677788888888876
Done!