RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy973
         (167 letters)



>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor;
           Provisional.
          Length = 526

 Score = 30.1 bits (67), Expect = 0.48
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 58  CESDFDSKEE-GSEGIREEGEKGGRKREGKEGEKKPMTRVAYLGGLLHELSNEGARCQFE 116
           C  DFD   + G  G   + E+ G  R G +GE+         G LL  +S + +R    
Sbjct: 110 CFEDFDKLPDCGDAGESRKAEEEGCVRIGGDGEQ---------GELLESMSLDCSRNSEN 160

Query: 117 VFLEDL 122
           + L DL
Sbjct: 161 LELGDL 166


>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
           hyaluronan.  Hyaluronan synthases (HASs) are
           bi-functional glycosyltransferases that catalyze
           polymerization of hyaluronan. HASs transfer both GlcUA
           and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
           respectively to the hyaluronan chain using UDP-GlcNAc
           and UDP-GlcUA as substrates. HA is made as a free
           glycan, not attached to a protein or lipid. HASs do not
           need a primer for HA synthesis; they initiate HA
           biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
           and Mg2+. Hyaluronan (HA) is a linear
           heteropolysaccharide composed of (1-3)-linked
           beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
           be found in vertebrates and a few microbes and is
           typically on the cell surface or in the extracellular
           space, but is also found inside mammalian cells.
           Hyaluronan has several physiochemical and biological
           functions such as space filling, lubrication, and
           providing a hydrated matrix through which cells can
           migrate.
          Length = 235

 Score = 27.2 bits (61), Expect = 4.3
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 140 VVVLLDDDTVDWDEAYPPQM 159
           +VVLLD DTV W     P+M
Sbjct: 80  IVVLLDSDTV-WPPNALPEM 98


>gnl|CDD|133431 cd05295, MDH_like, Malate dehydrogenase-like.  These MDH-like
           proteins are related to other groups in the MDH family
           but do not have conserved substrate and cofactor binding
           residues. MDH is one of the key enzymes in the citric
           acid cycle, facilitating both the conversion of malate
           to oxaloacetate and replenishing levels of oxalacetate
           by reductive carboxylation of pyruvate. Members of this
           subgroup are uncharacterized MDH-like proteins from
           animals. They are part of the NAD(P)-binding Rossmann
           fold superfamily, which includes a wide variety of
           protein families including the NAD(P)-binding domains of
           alcohol dehydrogenases, tyrosine-dependent
           oxidoreductases, glyceraldehyde-3-phosphate
           dehydrogenases, formate/glycerate dehydrogenases,
           siroheme synthases, 6-phosphogluconate dehydrogenases,
           aminoacid dehydrogenases, repressor rex, and NAD-binding
           potassium channel domains, among others.
          Length = 452

 Score = 27.0 bits (60), Expect = 5.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 119 LEDLILPLMVNSAQRGD-----RECHVVVLLDDDTVDWDE 153
           +EDL  PL+   +   D     ++ HV+VLLDD  +   E
Sbjct: 176 VEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGE 215


>gnl|CDD|221434 pfam12131, DUF3586, Protein of unknown function (DUF3586).  This
          domain is found in eukaryotes. This domain is about 80
          amino acids in length and is found associated with
          pfam08246, and pfam00112.
          Length = 78

 Score = 25.1 bits (55), Expect = 7.1
 Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 1/20 (5%)

Query: 23 VKQLEICLDDYCSGGSTSAT 42
          V Q   C D  C  G T  T
Sbjct: 23 VVQ-MTCTDAGCRKGCTKTT 41


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,407,171
Number of extensions: 758636
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 11
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)