RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy973
         (167 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 0.12
 Identities = 31/154 (20%), Positives = 45/154 (29%), Gaps = 47/154 (30%)

Query: 24  KQLEICL----DDY-CSGGSTSATGIGDGDYTTALDNLDCESDFD-SKEEGSEGIREEGE 77
           KQ+EI L     +   SG   S  G+        L      S  D S+   SE       
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGL-----NLTLRKAKAPSGLDQSRIPFSE------- 411

Query: 78  KGGRKREGKEGEKKPMTR---VA------YLGGLLHELSNEGARCQFEVFLEDLILPLMV 128
              RK        K   R   VA       L      ++ +  +       +D+ +P  V
Sbjct: 412 ---RK-------LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--V 459

Query: 129 NSAQRG-D-RECH------VVVLLDDDTVDWDEA 154
                G D R         +V  +    V W+  
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493



 Score = 28.5 bits (63), Expect = 1.3
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 26/68 (38%)

Query: 84  EGKEGEKKPMTRVAYLGGLLHELSNEGARCQFEVFLEDL--ILPL-------MVNSAQRG 134
           E  EG   PM  ++    L         + Q + ++      LP        +VN A+  
Sbjct: 329 ENNEGVPSPMLSIS---NL--------TQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-- 375

Query: 135 DRECHVVV 142
               ++VV
Sbjct: 376 ----NLVV 379


>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
           protein Y, stress RES stationary phase, ribosome
           hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
           1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H
           2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H
           2wrj_H 2wrl_H 2wro_H 2wrr_H ...
          Length = 180

 Score = 27.1 bits (61), Expect = 2.4
 Identities = 10/21 (47%), Positives = 10/21 (47%), Gaps = 1/21 (4%)

Query: 71  GIREEGEKGGRKREGKEGEKK 91
           GI   GE    K  GK G KK
Sbjct: 161 GIYYAGEPVRLK-PGKAGAKK 180


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 3.2
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 23 VKQLEICLDDYCSGGSTSATGI 44
          +K+L+  L  Y +  S  A  I
Sbjct: 22 LKKLQASLKLY-ADDSAPALAI 42


>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
           genomics, PSI, protein struc initiative; 3.20A
           {Agrobacterium tumefaciens str} SCOP: c.37.1.25
          Length = 191

 Score = 26.2 bits (57), Expect = 4.4
 Identities = 8/53 (15%), Positives = 21/53 (39%)

Query: 102 LLHELSNEGARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWDEA 154
           +  +++   A+  + V L+ ++ P  + +     R  H +VL        +  
Sbjct: 71  IAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERC 123


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 26.3 bits (57), Expect = 5.1
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 3/36 (8%)

Query: 63  DSKEEGSEGI---REEGEKGGRKREGKEGEKKPMTR 95
           D   +  E I   REE  K  ++ +      +   R
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWR 113


>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
           flavoprotein, oxidoreductase; HET: FAD; 2.20A
           {Rhodopseudomonas palustris}
          Length = 404

 Score = 26.0 bits (58), Expect = 7.4
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 97  AYLGGLLHELSNEGARCQFEVFLEDLILPLMVNSAQRGDRECHVVVLLDDDTVDWD 152
           AYL              + E F +D  + L+ +     DRE   ++L     +++ 
Sbjct: 48  AYLKS---GGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYG 100


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
           transcription factor, DNA-binding, DNA-directed RNA
           polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 25.8 bits (56), Expect = 8.0
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 9/34 (26%)

Query: 125 PLMVNSAQRGD---RECHVVVLLDDDTVD----W 151
           P +V     GD     C +V  L D  VD    W
Sbjct: 32  PKIVERFSEGDVVCALCGLV--LSDKLVDTRSEW 63


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0843    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,585,934
Number of extensions: 147559
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 13
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.4 bits)