RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy973
         (167 letters)



>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
           coli [TaxId: 562]}
          Length = 328

 Score = 25.2 bits (55), Expect = 4.1
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)

Query: 18  ESGADVKQLEICLDDYCSGGST--SATGIGDGDY 49
             G +  ++ + L D     +   SATGI  GD 
Sbjct: 260 AMGIEAGKV-LRLGDMARSDNVIFSATGITKGDL 292


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 623,532
Number of extensions: 26793
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.9 bits)