BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9730
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 316
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 15/114 (13%)
Query: 3 CKCHGVSGTCNIRTCWKSLPSKFIEVGKKLVNEYSRAIEIKAGVRTGSLRYSSTN----- 57
CKCHG+SG+C+I+TCW L ++F ++G L ++ +A++++ R S+ N
Sbjct: 159 CKCHGISGSCSIQTCWLQL-AEFRDIGNHLKIKHDQALKLEMDKRKMRSGNSADNRGAIA 217
Query: 58 ---------DLVYVTKSPDYCNFDAKLGSYGTSGRACNKSLTGYAGCESMCCGR 102
+L+++ SPDYC + LG GT GR C +S + E C R
Sbjct: 218 DAFSSVAGSELIFLEDSPDYCLKNISLGLQGTEGRECLQSGKNLSQWERRSCKR 271
>pdb|3QFX|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
pdb|3QFX|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
Length = 241
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 15 RTCWKSLPSKFIEVGKKLVNEYSRAI---EIKAGVRTGSLRYSSTNDLVYV 62
R W SLP KF + +L SR+ ++ AG+ R + ND+V V
Sbjct: 84 RKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAV 134
>pdb|3RG9|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
pdb|3RG9|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
Length = 240
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 15 RTCWKSLPSKFIEVGKKLVNEYSRAI---EIKAGVRTGSLRYSSTNDLVYV 62
R W SLP KF + +L SR+ ++ AG+ R + ND+V V
Sbjct: 84 RKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAV 134
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 15 RTCWKSLPSKFIEVGKKLVNEYSRAIEIKAGVRTGSLRYSSTNDLVYVTKSPDYCNFDAK 74
R CW P +V R ++ AG+ R+SST D++Y K+ + +
Sbjct: 211 RVCWDRFPGADYSEVSDVVMPCGRVLQ-TAGIHNLGQRFSSTFDILYANKANESVHPYLT 269
Query: 75 LGSYGTSGRACNKSLTGYAG 94
T AC S+ G +G
Sbjct: 270 CAGISTRVLACALSIHGDSG 289
>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From
Escherichia Coli K12 At 2.20 A Resolution
Length = 269
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 25 FIEVGKKLVNEYSRAIEIKAGVRTGSLRYSSTN 57
F+EVG+ L +R + ++G++ +LRY ++
Sbjct: 172 FVEVGETLEQAVAREVXEESGIKVKNLRYVTSQ 204
>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
pdb|2GB5|B Chain B, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
Length = 269
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 25 FIEVGKKLVNEYSRAIEIKAGVRTGSLRYSSTN 57
F+EVG+ L +R + ++G++ +LRY ++
Sbjct: 172 FVEVGETLEQAVAREVXEESGIKVKNLRYVTSQ 204
>pdb|1X9D|A Chain A, Crystal Structure Of Human Class I Alpha-1,2-Mannosidase
In Complex With Thio-Disaccharide Substrate Analogue
Length = 538
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 18 WKSLPSKFIEVGKK---LVNEYSRAIEIKAGVRTGSLRYSSTNDLVYV 62
++ L ++I+ GK+ L+ +Y AIE GVRT LR+S + L +V
Sbjct: 305 YEYLLKQWIQGGKQETQLLEDYVEAIE---GVRTHLLRHSEPSKLTFV 349
>pdb|1FMI|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase
Length = 458
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 18 WKSLPSKFIEVGKK---LVNEYSRAIEIKAGVRTGSLRYSSTNDLVYV 62
++ L ++I+ GK+ L+ +Y AIE GVRT LR+S + L +V
Sbjct: 227 YEYLLKQWIQGGKQETQLLEDYVEAIE---GVRTHLLRHSEPSKLTFV 271
>pdb|1FO2|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With 1-Deoxymannojirimycin
pdb|1FO3|A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase In
Complex With Kifunensine
Length = 460
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 18 WKSLPSKFIEVGKK---LVNEYSRAIEIKAGVRTGSLRYSSTNDLVYV 62
++ L ++I+ GK+ L+ +Y AIE GVRT LR+S + L +V
Sbjct: 227 YEYLLKQWIQGGKQETQLLEDYVEAIE---GVRTHLLRHSEPSKLTFV 271
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 11 TCNIRTCWKSLPSKFIEVGKKLVNEYSRAIEIKAG--VRTGSLRYSSTNDLVYVTKSPDY 68
T +++ + +LP + E + + EY++ +++ + + +R S TN L + P
Sbjct: 156 TVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVV 215
Query: 69 C 69
C
Sbjct: 216 C 216
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 11 TCNIRTCWKSLPSKFIEVGKKLVNEYSRAIEIKAG--VRTGSLRYSSTNDLVYVTKSPDY 68
T +++ + +LP + E + + EY++ +++ + + +R S TN L + P
Sbjct: 156 TVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVV 215
Query: 69 C 69
C
Sbjct: 216 C 216
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 11 TCNIRTCWKSLPSKFIEVGKKLVNEYSRAIEIKAG--VRTGSLRYSSTNDLVYVTKSPDY 68
T +++ + +LP + E + + EY++ +++ + + +R S TN L + P
Sbjct: 156 TVSVQQLFSTLPVRHKEFQRNIKKEYAKXVQVLHAYCIISAGIRVSCTNQLGQGKRQPVV 215
Query: 69 C 69
C
Sbjct: 216 C 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,846,637
Number of Sequences: 62578
Number of extensions: 133255
Number of successful extensions: 247
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 12
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)