Query psy9730
Match_columns 140
No_of_seqs 103 out of 704
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 18:07:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9730.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9730hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0a_B Protein WNT-8, XWNT-8; 100.0 4.2E-63 1.4E-67 412.7 6.4 139 1-140 157-316 (316)
2 2oq9_A Minicollagen-5; disulfi 31.2 17 0.00058 18.9 0.9 12 92-103 14-25 (26)
3 2lfw_B NEPR anti sigma factor; 30.2 13 0.00044 23.7 0.4 16 26-41 26-41 (62)
4 3nm9_A HMG-D, high mobility gr 28.9 22 0.00074 22.0 1.3 23 17-40 41-66 (73)
5 2fcg_F Cationic, antibacterial 28.9 30 0.001 18.3 1.6 15 24-38 4-18 (26)
6 3fgh_A Transcription factor A, 26.1 26 0.0009 21.1 1.3 24 17-40 36-63 (67)
7 4a1x_C CP5-46-A peptide; hydro 25.0 34 0.0011 17.7 1.3 12 57-68 4-15 (26)
8 2cto_A Novel protein; high mob 24.3 33 0.0011 22.9 1.6 25 18-42 50-78 (93)
9 1ckt_A High mobility group 1 p 22.3 36 0.0012 20.6 1.4 15 25-39 53-67 (71)
10 4a3n_A Transcription factor SO 20.6 53 0.0018 19.6 1.9 23 17-39 40-66 (71)
No 1
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=100.00 E-value=4.2e-63 Score=412.70 Aligned_cols=139 Identities=36% Similarity=0.887 Sum_probs=128.7
Q ss_pred CcceecCccCCccchhhhccCChhHHHHHHHHHHhhccceeeec-------Cc-------ccCccCCCCCCceEEEcCCC
Q psy9730 1 MHCKCHGVSGTCNIRTCWKSLPSKFIEVGKKLVNEYSRAIEIKA-------GV-------RTGSLRYSSTNDLVYVTKSP 66 (140)
Q Consensus 1 ~~CkChGvSGSC~~ktCw~~lp~~f~~ig~~Lk~kY~~A~~v~~-------g~-------~~~~~~~~~~~dLVYl~~SP 66 (140)
++||||||||||++||||++||+ |++||+.||+||++|++|.. |+ ....+++|+.+||||||+||
T Consensus 157 ~~CKCHGvSGSCt~KTCW~~lp~-Fr~VG~~LK~kyd~A~~V~~~~~~~~~~~~~~~~~~~~~~~k~p~~~dLVYle~SP 235 (316)
T 4f0a_B 157 RTCKCHGISGSCSIQTCWLQLAE-FRDIGNHLKIKHDQALKLEMDKRKMRSGNSADNRGAIADAFSSVAGSELIFLEDSP 235 (316)
T ss_dssp EEEEECSGGGCTTSEEEEEECCC-HHHHHHHHHHHHHTCEECCC-------------CHHHHHHHHTSCSSSCEECSCCC
T ss_pred eeeecCCccccccceehcccCCC-HHHHHHHHHHHhhhheEeeecccccccccccccccccccccCCCCCCCeEEeCCCC
Confidence 37999999999999999999999 99999999999999999972 11 01124678899999999999
Q ss_pred CCcccCCCCcCCCCCCCeecCCCCCc-----CCCcccc--cCCCeeEEEEEEEEeeCcEEEeeeEEECccceeEEEEEEe
Q psy9730 67 DYCNFDAKLGSYGTSGRACNKSLTGY-----AGCESMC--CGRGYSTKLIEKIERCQCKYHYCCYVKCKICHTWIERQYC 139 (140)
Q Consensus 67 dyC~~d~~~g~~GT~GR~C~~~s~~~-----~~C~~lC--CGrGy~~~~~~~~~~CnCkF~WCC~V~C~~C~~~~~~~~C 139 (140)
|||++|+.+||+||+||+||++|.+. |+|++|| |||||+|++++++|+|||||||||+|+|++|.+++++|+|
T Consensus 236 dfC~~n~~~Gs~GT~GR~Cn~tS~g~s~~~~dgCdlLC~~CGRGy~t~~~~~~erC~CkF~WCC~V~C~~C~~~~~~~~C 315 (316)
T 4f0a_B 236 DYCLKNISLGLQGTEGRECLQSGKNLSQWERRSCKRLCTDCGLRVEEKKTEIISSCNCKFHWCCTVKCEQCKQVVIKHFC 315 (316)
T ss_dssp CTTSEETTTTEECSTTCEECCCCTTCCHHHHTHHHHHTGGGTCCEEEEEEEEEEECSCBCCSSSCCBCCEEEEEEEEEEE
T ss_pred cccccCCCCCCCCCCCcccCCCCCCCcCCCCCCHHHHHHhcCCceeEEEEEEEEeeCCEEEeeeEEECCcCCeEEEEEEe
Confidence 99999999999999999999999998 9999999 9999999999999999999999999999999999999999
Q ss_pred C
Q psy9730 140 N 140 (140)
Q Consensus 140 ~ 140 (140)
.
T Consensus 316 ~ 316 (316)
T 4f0a_B 316 A 316 (316)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>2oq9_A Minicollagen-5; disulfide, CIS-proline, nematocyst, non-canonical CRD, cysteine-rich domain, structural protein; NMR {Synthetic}
Probab=31.24 E-value=17 Score=18.86 Aligned_cols=12 Identities=50% Similarity=1.304 Sum_probs=9.6
Q ss_pred cCCCcccccCCC
Q psy9730 92 YAGCESMCCGRG 103 (140)
Q Consensus 92 ~~~C~~lCCGrG 103 (140)
..+|..-||||.
T Consensus 14 mascapqccgr~ 25 (26)
T 2oq9_A 14 MASCAPQCCGRX 25 (26)
T ss_dssp CTTTTTTTTCC-
T ss_pred HHhccHHhhcCC
Confidence 468999999995
No 3
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=30.16 E-value=13 Score=23.65 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhcccee
Q psy9730 26 IEVGKKLVNEYSRAIE 41 (140)
Q Consensus 26 ~~ig~~Lk~kY~~A~~ 41 (140)
++||..|+..|+.++.
T Consensus 26 ~~Ig~~LR~~Yd~vv~ 41 (62)
T 2lfw_B 26 RDMGAALRSAYQKTIE 41 (62)
T ss_dssp TTHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6899999999998764
No 4
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=28.90 E-value=22 Score=21.98 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=16.9
Q ss_pred hhccCC---hhHHHHHHHHHHhhccce
Q psy9730 17 CWKSLP---SKFIEVGKKLVNEYSRAI 40 (140)
Q Consensus 17 Cw~~lp---~~f~~ig~~Lk~kY~~A~ 40 (140)
-|+.|+ . |.+.+..++++|...+
T Consensus 41 ~Wk~ls~K~~-y~~~A~~~k~~y~~~~ 66 (73)
T 3nm9_A 41 LWRAMKDKSE-WEAKAAKAKDDYDRAV 66 (73)
T ss_dssp HHHHCSCCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHcCCchHH-HHHHHHHHHHHHHHHH
Confidence 477777 5 7778888888887654
No 5
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=28.87 E-value=30 Score=18.29 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhhcc
Q psy9730 24 KFIEVGKKLVNEYSR 38 (140)
Q Consensus 24 ~f~~ig~~Lk~kY~~ 38 (140)
+|+.||+.||+-|.+
T Consensus 4 ~~kkIgQkIkdFf~~ 18 (26)
T 2fcg_F 4 EFKRIVQRIKDFLRN 18 (26)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 489999999986654
No 6
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=26.12 E-value=26 Score=21.11 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=17.8
Q ss_pred hhccCCh----hHHHHHHHHHHhhccce
Q psy9730 17 CWKSLPS----KFIEVGKKLVNEYSRAI 40 (140)
Q Consensus 17 Cw~~lp~----~f~~ig~~Lk~kY~~A~ 40 (140)
-|+.|++ .|.+.+..++++|...+
T Consensus 36 ~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~ 63 (67)
T 3fgh_A 36 NWKNLSDSEKELYIQHAKEDETRYHNEM 63 (67)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888875 26678888888887654
No 7
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=25.05 E-value=34 Score=17.69 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=10.3
Q ss_pred CceEEEcCCCCC
Q psy9730 57 NDLVYVTKSPDY 68 (140)
Q Consensus 57 ~dLVYl~~SPdy 68 (140)
..|||+-+.|.|
T Consensus 4 grlvylldgpgy 15 (26)
T 4a1x_C 4 GRLVYLLDGPGY 15 (26)
T ss_pred ceEEEEecCCCC
Confidence 479999999977
No 8
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.35 E-value=33 Score=22.86 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=19.9
Q ss_pred hccCCh----hHHHHHHHHHHhhccceee
Q psy9730 18 WKSLPS----KFIEVGKKLVNEYSRAIEI 42 (140)
Q Consensus 18 w~~lp~----~f~~ig~~Lk~kY~~A~~v 42 (140)
|+.|++ +|.+.+..|+++|...+..
T Consensus 50 Wk~ls~eEK~pYe~~A~~~K~~y~kd~~~ 78 (93)
T 2cto_A 50 WALLREEEKEKYAEMAREWRAAQGKDPGP 78 (93)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhccccc
Confidence 888873 2788999999999977644
No 9
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=22.33 E-value=36 Score=20.59 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhccc
Q psy9730 25 FIEVGKKLVNEYSRA 39 (140)
Q Consensus 25 f~~ig~~Lk~kY~~A 39 (140)
|.+.+..++++|...
T Consensus 53 y~~~A~~~k~~y~~e 67 (71)
T 1ckt_A 53 FEDMAKADKARYERE 67 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 10
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=20.56 E-value=53 Score=19.64 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=14.7
Q ss_pred hhccCChh----HHHHHHHHHHhhccc
Q psy9730 17 CWKSLPSK----FIEVGKKLVNEYSRA 39 (140)
Q Consensus 17 Cw~~lp~~----f~~ig~~Lk~kY~~A 39 (140)
-|+.|++. |.+.+..++++|..+
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 66 (71)
T 4a3n_A 40 SWKALTLAEKRPFVEEAERLRVQHMQD 66 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 47777652 556677777777654
Done!