Query psy9730
Match_columns 140
No_of_seqs 103 out of 704
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 18:07:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9730.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9730hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tv0a_ g.9.1.1 (A:) Defensin- 56.6 0.38 2.8E-05 25.0 -1.8 27 98-124 3-30 (32)
2 d1gl1i_ g.4.1.1 (I:) Protease 54.4 1.3 9.4E-05 23.4 0.1 16 2-17 15-32 (34)
3 d2et1a1 b.82.1.2 (A:1-201) Ger 21.1 30 0.0022 24.2 2.9 26 63-88 2-29 (201)
4 d1nbja_ g.3.3.2 (A:) Cycloviol 15.5 15 0.0011 18.5 -0.1 13 10-22 18-30 (30)
5 d2lefa_ a.21.1.1 (A:) Lymphoid 14.4 42 0.0031 19.9 2.0 23 17-39 40-66 (86)
6 d1i11a_ a.21.1.1 (A:) Sox-5 {M 14.1 51 0.0037 18.6 2.2 22 17-38 40-65 (70)
7 d1nekb2 d.15.4.2 (B:1-106) Suc 13.2 24 0.0017 22.5 0.5 18 6-23 57-81 (106)
8 d1ckta_ a.21.1.1 (A:) High mob 12.2 42 0.003 18.9 1.4 23 17-39 41-67 (71)
9 d1o9aa1 g.27.1.1 (A:17-60) Fib 11.8 32 0.0024 18.8 0.7 9 2-10 28-36 (44)
10 d1x6oa2 b.40.4.5 (A:87-165) C- 11.3 45 0.0033 20.4 1.3 18 20-38 37-54 (79)
No 1
>d1tv0a_ g.9.1.1 (A:) Defensin-related cryptdin 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.59 E-value=0.38 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.814 Sum_probs=19.1
Q ss_pred cc-cCCCeeEEEEEEEEeeCcEEEeeeE
Q psy9730 98 MC-CGRGYSTKLIEKIERCQCKYHYCCY 124 (140)
Q Consensus 98 lC-CGrGy~~~~~~~~~~CnCkF~WCC~ 124 (140)
|| |-.|+-..-+.+.-.|.=+|.+||+
T Consensus 3 lcycrkghckrgervrgtcgirflyccp 30 (32)
T d1tv0a_ 3 LCYCRKGHCKRGERVRGTCGIRFLYCCP 30 (32)
T ss_dssp CCEEEESCCSSCEECSSCSSSSEEEECC
T ss_pred eEEEccCcccCCcEeeeecceeEEEEcC
Confidence 44 5555555556667788889999986
No 2
>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=54.38 E-value=1.3 Score=23.43 Aligned_cols=16 Identities=38% Similarity=1.323 Sum_probs=13.2
Q ss_pred ccee--cCccCCccchhh
Q psy9730 2 HCKC--HGVSGTCNIRTC 17 (140)
Q Consensus 2 ~CkC--hGvSGSC~~ktC 17 (140)
.|+| .|-|++|+.|.|
T Consensus 15 tcrc~s~gksaactlkac 32 (34)
T d1gl1i_ 15 TCRCGADGKSAACTLKAC 32 (34)
T ss_dssp EEEECTTSSCEEEECCCC
T ss_pred eeeecCCCcccceeeccC
Confidence 4666 799999999877
No 3
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=21.12 E-value=30 Score=24.22 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=18.9
Q ss_pred cCCC--CCcccCCCCcCCCCCCCeecCC
Q psy9730 63 TKSP--DYCNFDAKLGSYGTSGRACNKS 88 (140)
Q Consensus 63 ~~SP--dyC~~d~~~g~~GT~GR~C~~~ 88 (140)
+++| |||..|.......+.|-.|.+.
T Consensus 2 dp~~lqdfcvad~~~~~~~~~g~~ck~~ 29 (201)
T d2et1a1 2 DPDPLQDFCVADLDGKAVSVNGHTCKPM 29 (201)
T ss_dssp CCCCSSSCCCBCCCTTSCCCSSCCBCCG
T ss_pred CCcccceeEeecCCCCccccCCcccCCh
Confidence 4566 9999987654456789999653
No 4
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=15.53 E-value=15 Score=18.49 Aligned_cols=13 Identities=31% Similarity=1.050 Sum_probs=10.8
Q ss_pred CCccchhhhccCC
Q psy9730 10 GTCNIRTCWKSLP 22 (140)
Q Consensus 10 GSC~~ktCw~~lp 22 (140)
-||.-|.|+.+||
T Consensus 18 c~c~~kvcyn~~p 30 (30)
T d1nbja_ 18 CSCSNRVCYNGIP 30 (30)
T ss_dssp CEEETTEEESSCC
T ss_pred ccccCceeecCCC
Confidence 4688899999887
No 5
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.41 E-value=42 Score=19.88 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=15.4
Q ss_pred hhccCCh----hHHHHHHHHHHhhccc
Q psy9730 17 CWKSLPS----KFIEVGKKLVNEYSRA 39 (140)
Q Consensus 17 Cw~~lp~----~f~~ig~~Lk~kY~~A 39 (140)
=|+.||+ .|.+.+..++++|...
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~~~~~ 66 (86)
T d2lefa_ 40 RWHALSREEQAKYYELARKERQLHMQL 66 (86)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3788875 2556777777777643
No 6
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.06 E-value=51 Score=18.65 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=13.6
Q ss_pred hhccCCh----hHHHHHHHHHHhhcc
Q psy9730 17 CWKSLPS----KFIEVGKKLVNEYSR 38 (140)
Q Consensus 17 Cw~~lp~----~f~~ig~~Lk~kY~~ 38 (140)
-|++|++ .|.+.++.++++|..
T Consensus 40 ~Wk~ls~~eK~~y~~~A~~~k~~~~~ 65 (70)
T d1i11a_ 40 RWKAMTNLEKQPYYEEQARLSKQHLE 65 (70)
T ss_dssp HHTTSCSGGGHHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3777763 266667777766653
No 7
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.23 E-value=24 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=14.1
Q ss_pred cCccCCccchh-------hhccCCh
Q psy9730 6 HGVSGTCNIRT-------CWKSLPS 23 (140)
Q Consensus 6 hGvSGSC~~kt-------Cw~~lp~ 23 (140)
||+-|||+++. |...+.+
T Consensus 57 ~giCGsCam~ING~~~LAC~t~v~~ 81 (106)
T d1nekb2 57 EGVCGSDGLNMNGKNGLACITPISA 81 (106)
T ss_dssp SSCSCTTEEEETTEEEETTSCBTTT
T ss_pred CCCCCcceEEEcCccccchheehhH
Confidence 79999999986 7666555
No 8
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.22 E-value=42 Score=18.93 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=14.0
Q ss_pred hhccCCh----hHHHHHHHHHHhhccc
Q psy9730 17 CWKSLPS----KFIEVGKKLVNEYSRA 39 (140)
Q Consensus 17 Cw~~lp~----~f~~ig~~Lk~kY~~A 39 (140)
=|++||+ .|.+.+...+++|...
T Consensus 41 ~Wk~ls~~eK~~y~~~a~~~k~~y~~e 67 (71)
T d1ckta_ 41 RWKTMSAKEKGKFEDMAKADKARYERE 67 (71)
T ss_dssp HHHTCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3666664 2556666677766643
No 9
>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.80 E-value=32 Score=18.84 Aligned_cols=9 Identities=44% Similarity=0.866 Sum_probs=7.3
Q ss_pred cceecCccC
Q psy9730 2 HCKCHGVSG 10 (140)
Q Consensus 2 ~CkChGvSG 10 (140)
.|.|+|+|.
T Consensus 28 ~CTC~Gg~~ 36 (44)
T d1o9aa1 28 VCTCYGGSR 36 (44)
T ss_dssp EEEECSSTT
T ss_pred EEEEccCcc
Confidence 588999983
No 10
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=11.35 E-value=45 Score=20.41 Aligned_cols=18 Identities=6% Similarity=0.320 Sum_probs=15.6
Q ss_pred cCChhHHHHHHHHHHhhcc
Q psy9730 20 SLPSKFIEVGKKLVNEYSR 38 (140)
Q Consensus 20 ~lp~~f~~ig~~Lk~kY~~ 38 (140)
.||+ ..++|+.|++.|+.
T Consensus 37 kLP~-d~elg~~I~~~f~~ 54 (79)
T d1x6oa2 37 DMPP-DPALATQIKEQFDS 54 (79)
T ss_dssp BCCS-CHHHHHHHHHHHHT
T ss_pred CCCC-chHHHHHHHHHHhC
Confidence 4777 68999999999985
Done!